Citrus Sinensis ID: 024191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Secondary Structure (PSIPRED)
cccccccEEEEEcccHHHHHHHHHHHccccccHHHHHHHccccccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEEcEEEcccEEEccccEEccccccccccccccEEEEcEEEEEEEccccEEccccccccccccccEEccccEEcccEEEEcccEEccccEEEEcEEEEEcEEEcccEEEccEEEEcccEEEccccEEccccccccccccccEEEEcccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccEEEEccHHHHHHHHHHHHcccccccccccccccccccEEEccccEccccEEEcccEEEcccEEEcccEEEcccEEEccccEEccccEEcccEEEEEEEEccEEEEEccEEEccccccccccccccEEEEcccEEEEEcccEEEEcccEEccccccccEEcccEEEccEEEEEEEEEEcccEEEEEEEEEEEEEEEccEEEEEEEEEEcccEEEcccEEEEEEcccccccccccEEcccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAVKRFVHYYRLTKTYKqdfgrfcnlfstksDIESRQQFQKwhngggifhqsacidstvlIEVGAIVHSKAVLGanvcigsgtvvgpavtigqstnigfNVALSnciigdsciihngvcigqdgfgffvdehgnmlkkpqllnarignhveiganscidrgswrdtvigdhskidnlVQIGHNVAIGKSCmlcgqvgiagsatigdyvTLGGRVAVRDHVSIASKVRLAAnscvfkditepgdyggfpavpihEWRRQVANQIRSSKKRTS
Flexible Loop (DISEMBL)
mavkrfvhyyrltktykqdfgrFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Low Complexity Region (SEG)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Disordered region (IsUnstruct)
***KRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQV************
Disordered Region (DISOPRED)
***KRFVHYYRLTKTYKQDFGRFCNLFSTKSDIES***********GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQI*SSK****
Disordered Region (DISEMBL)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ*************
Disordered Region (DISPRO)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
F4JIP6	304	Probable UDP-3-O-acylgluc	yes	no	0.896	0.799	0.711	1e-99
F4JGP6	330	Probable UDP-3-O-acylgluc	no	no	0.881	0.724	0.633	4e-92
Q89KQ2	355	UDP-3-O-acylglucosamine N	yes	no	0.808	0.616	0.477	5e-48
A5EK46	355	UDP-3-O-acylglucosamine N	yes	no	0.926	0.707	0.434	6e-48
A4YVF7	355	UDP-3-O-acylglucosamine N	yes	no	0.852	0.650	0.449	2e-47
Q11IJ0	350	UDP-3-O-acylglucosamine N	yes	no	0.892	0.691	0.411	7e-47
Q2K8X9	354	UDP-3-O-acylglucosamine N	yes	no	0.800	0.612	0.464	8e-47
A7HY09	353	UDP-3-O-acylglucosamine N	yes	no	0.959	0.736	0.387	9e-47
Q2W4D3	339	UDP-3-O-acylglucosamine N	yes	no	0.929	0.743	0.397	4e-46
Q1MH46	354	UDP-3-O-acylglucosamine N	yes	no	0.800	0.612	0.455	1e-45

>sp|F4JIP6|LPXD2_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial OS=Arabidopsis thaliana GN=LPXD2 PE=3 SV=1

 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/243 (71%), Positives = 201/243 (82%)

Query: 27  FSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 86
             T   I  ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+G
Sbjct: 61  LKTGGGIIVKEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIG 120

Query: 87  PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARI 146
           P+V IG ST IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +I
Sbjct: 121 PSVDIGPSTRIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKI 180

Query: 147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGD 206
           GN VEIGAN+CIDRGSWR+TVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGD
Sbjct: 181 GNRVEIGANTCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGD 240

Query: 207 YVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSS 266
           YV LGGR AVRDHVSI SKVRLAANSCV ++ITEPGD+GGFPAVPIHEWR+Q+     ++
Sbjct: 241 YVALGGRAAVRDHVSIVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIAN 300

Query: 267 KKR 269
           K+ 
Sbjct: 301 KRE 303

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3-hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|F4JGP6|LPXD1_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial OS=Arabidopsis thaliana GN=LPXD1 PE=2 SV=1

 Score =  337 bits (865), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 171/270 (63%), Positives = 199/270 (73%), Gaps = 31/270 (11%)

Query: 25  NLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV 84
           +L  T S     + F +W NGGG++H+SA IDS+ L+E GA+VH +A+LGA V IGS TV
Sbjct: 66  DLLETSSGGNVEKGFLRWRNGGGMYHRSALIDSSALVEFGAVVHQEAILGAEVHIGSNTV 125

Query: 85  VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 144
           +G +V IG ST IG      NC IGD C+IHNGVCIGQDGFGF+VD++GNM+KKPQ LN 
Sbjct: 126 IGSSVKIGPSTKIG------NCSIGDLCVIHNGVCIGQDGFGFYVDDNGNMVKKPQTLNV 179

Query: 145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI 204
           +IGN VEIGAN+CIDRGSWRDTVIGD +KIDNLVQIGHNV IGK C+ CGQVGIAGSA I
Sbjct: 180 KIGNRVEIGANTCIDRGSWRDTVIGDDTKIDNLVQIGHNVIIGKCCLFCGQVGIAGSAEI 239

Query: 205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA--------------- 249
           GD+V LGGRVAVRDHVSI SKVRLAANSCV K+ITEPGDYGGFPA               
Sbjct: 240 GDFVALGGRVAVRDHVSIVSKVRLAANSCVTKNITEPGDYGGFPAYKKTEPDSAFASDKH 299

Query: 250 ----------VPIHEWRRQVANQIRSSKKR 269
                     VPIH+WRRQ+     SSK++
Sbjct: 300 CFILQKILIQVPIHQWRRQIVEAQISSKRK 329

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3-hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q89KQ2|LPXD_BRAJA UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=lpxD PE=3 SV=1

 Score =  191 bits (484), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 139/226 (61%), Gaps = 7/226 (3%)

Query: 40  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 93
           Q W    GI   SA ID T  +E G IV   AV+GA+V IGSGTVVG      P V IG+
Sbjct: 111 QSWVGNDGI-APSAIIDPTARLEDGVIVDPLAVIGADVEIGSGTVVGVGAVIGPGVKIGR 169

Query: 94  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 153
             N+G   A+   +IG+  +IH G  IGQDG+GF        LK PQ     I N+VE+G
Sbjct: 170 DCNVGARTAIQCALIGNDVLIHPGCSIGQDGYGFIFFGPEGHLKVPQTGRVLIQNNVEVG 229

Query: 154 ANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR 213
           A + IDRGS RDTVIG+ +KIDN VQIGHNV IG++C+L  Q+G+AGS TIGD V LG +
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIGHNVTIGRNCLLAAQIGLAGSLTIGDNVALGAK 289

Query: 214 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQV 259
           V + +H+ I    ++ A S V  DI   G +GGF A P  +W +++
Sbjct: 290 VGINNHLKIGDGAQVTAMSGVKDDIPPNGRWGGFFAKPTKQWFKEI 335

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A5EK46|LPXD_BRASB UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=lpxD PE=3 SV=1

 Score =  191 bits (484), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 149/260 (57%), Gaps = 9/260 (3%)

Query: 18  QDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANV 77
           Q F  F  L  T      R Q   W    GI  Q A ID +  +E G +V   AV+GA+V
Sbjct: 91  QPFRAFVQLARTMHADALRPQ--SWFGCDGISSQ-AIIDPSARLEDGVVVEPLAVIGAHV 147

Query: 78  CIGSGTVVG------PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131
            IG+GT+VG      P V IG+  N+G    +   +IG+  +IH    IGQDG+GF    
Sbjct: 148 EIGAGTIVGAGAVIGPHVKIGRDCNVGARTVIQCALIGNDVLIHPACAIGQDGYGFIFFG 207

Query: 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 191
            G  +K PQ     I NHVEIGA + IDRGS RDTVIG+ +KIDN VQIGHNV IG+ C+
Sbjct: 208 PGGHVKVPQTGRVIIQNHVEIGAGTTIDRGSLRDTVIGEGTKIDNQVQIGHNVTIGRHCL 267

Query: 192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251
           L  Q+G+AGS TIGD V LG +V + +H++I    ++ A S V  DI   G +GGF A P
Sbjct: 268 LAAQIGLAGSLTIGDNVALGAKVGINNHLTIGDGAQVTAMSGVKDDIPPNGRWGGFFAKP 327

Query: 252 IHEWRRQVANQIRSSKKRTS 271
             +W R++    R  + +T+
Sbjct: 328 TKQWFREIVAVERLVRDQTA 347

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A4YVF7|LPXD_BRASO UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=lpxD PE=3 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 142/238 (59%), Gaps = 7/238 (2%)

Query: 40  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 93
           Q W    GI  Q A ID T  +E G IV   AV+GA+V IG+GT+VG      P V +G+
Sbjct: 111 QPWFGDDGISPQ-AIIDPTARLEDGVIVEPLAVIGAHVEIGAGTIVGAGAVIGPHVKVGR 169

Query: 94  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 153
             N+G    +   +IG+  +IH G  IGQDG+GF         K PQ     I NHVE+G
Sbjct: 170 DCNVGARTVIQCSLIGNDVLIHPGCSIGQDGYGFIFFGANGHTKVPQTGRVIIQNHVEVG 229

Query: 154 ANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR 213
           A + IDRGS RDTVIG+ +KIDN VQIGHNV IG+ C+L  Q+G+AGS TIGD V LG +
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIGHNVTIGRHCLLAAQIGLAGSLTIGDNVALGAK 289

Query: 214 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS 271
           V + +H++I    ++ A S V  DI   G +GGF A P  +W R++    R  + +T+
Sbjct: 290 VGINNHLTIGDGAQVTAMSGVKDDIPPNGRWGGFFAKPTKQWFREIVAVERLVRDQTA 347

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q11IJ0|LPXD_MESSB UDP-3-O-acylglucosamine N-acyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=lpxD PE=3 SV=2

 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 13/255 (5%)

Query: 12  LTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKA 71
           ++   +Q F     L   +++   R Q      G       A I    ++E GAI+ + A
Sbjct: 88  VSPKPQQAFAMVARLLFPEAN---RPQPVTGETG---VSPRAVIAEGAVVEDGAIIEAGA 141

Query: 72  VLGANVCIGSGTVVGPAVTIGQSTNIG------FNVALSNCIIGDSCIIHNGVCIGQDGF 125
           V+G    +G GT+VGP   IG   +IG       NV L   +IGD  IIH G  IGQDGF
Sbjct: 142 VIGVGASVGRGTIVGPNTVIGARCSIGRDGYVGPNVMLQYAVIGDRVIIHPGAQIGQDGF 201

Query: 126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA 185
           GF    +G   K PQ+    I + VEIGAN+ IDRG+  DT+IG+ +KIDNLVQIGHNV 
Sbjct: 202 GFLPGPNG-FEKNPQIGRVIIQDDVEIGANTTIDRGALSDTIIGEGTKIDNLVQIGHNVH 260

Query: 186 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG 245
           IG+ C++ G  G++GS  +GDYV LGG+V + DH++I ++ +LAA+S V  D+ E   + 
Sbjct: 261 IGRRCVIAGLCGLSGSVKLGDYVMLGGQVGIADHITIGNRAQLAASSGVMDDVPEGERWA 320

Query: 246 GFPAVPIHEWRRQVA 260
           G PA P+ +  R++A
Sbjct: 321 GVPAKPMRQAFREIA 335

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2K8X9|LPXD_RHIEC UDP-3-O-acylglucosamine N-acyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=lpxD PE=3 SV=1

 Score =  187 bits (474), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 142/224 (63%), Gaps = 7/224 (3%)

Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGT------VVGPAVTIGQSTNIGFNVALSN 105
           SA ID +  +E G IV   AV+G +  IG GT      V+GP V IG+  +I    ++  
Sbjct: 122 SAVIDPSAKLEKGVIVEPLAVIGPHAEIGEGTRIGANSVIGPDVKIGRDCSIAAGASILC 181

Query: 106 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
            +IG+  +IHNGV IGQDGFG+     G M+K  Q+    I ++VEIGAN+ IDRG+  D
Sbjct: 182 ALIGNGVVIHNGVRIGQDGFGYAPGPRG-MIKIVQIGRVIIQDNVEIGANTTIDRGAMDD 240

Query: 166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 225
           TVIG+ +KIDN VQIGHNV IG+ C +  QVGIAGS  IG+ V +GG+V ++ HV+I   
Sbjct: 241 TVIGEGTKIDNQVQIGHNVQIGRHCAIVSQVGIAGSTKIGNGVQIGGQVGIKGHVTIGDG 300

Query: 226 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           V++AA S +  D+   G YGG PA P+ ++ R+ A Q+  SK R
Sbjct: 301 VQIAAKSGIMTDLAAGGQYGGIPARPLKDYLREAAQQVSKSKLR 344

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A7HY09|LPXD_PARL1 UDP-3-O-acylglucosamine N-acyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=lpxD PE=3 SV=1

 Score =  187 bits (474), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 151/271 (55%), Gaps = 11/271 (4%)

Query: 1   MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVL 60
           ++ + +  Y  + + +  D     + F  + +I  R             H +A + + V 
Sbjct: 88  LSDQPYRAYALVAQIFHPDEAHGADTFGARGEIHPR----------ATVHPTAKLGTGVT 137

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           +E G  + +   +G N  IG+ T VG   T+G+   IG NV LS+  +GD  ++H GV I
Sbjct: 138 LEPGVTIGAGVEIGNNTVIGTNTSVGKGCTVGKDCFIGPNVTLSHAHLGDRVMVHPGVRI 197

Query: 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI 180
           GQDGFGF +       K PQL    + + VEIGANS +DRG+  DTVIG+ +KIDNLVQI
Sbjct: 198 GQDGFGFAMGLP-RHEKVPQLGRVIVQDDVEIGANSTVDRGAGPDTVIGEGTKIDNLVQI 256

Query: 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE 240
           GHNV IG+ C++  Q GIAGS  +GD+V L  +V V  H++I S  ++AA   V  D+  
Sbjct: 257 GHNVEIGRGCIIVSQTGIAGSTKLGDFVVLAAQVGVTGHLTINSGAQIAARGAVVHDVPA 316

Query: 241 PGDYGGFPAVPIHEWRRQVANQIRSSKKRTS 271
              YGG PA PI EWRR+V    +  ++R S
Sbjct: 317 GQQYGGVPAKPIAEWRREVVELRKLGRRRRS 347

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2W4D3|LPXD_MAGSA UDP-3-O-acylglucosamine N-acyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=lpxD PE=3 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 146/259 (56%), Gaps = 7/259 (2%)

Query: 12  LTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKA 71
           L+    + + R    F      E       W         SA +     IE GA++ + A
Sbjct: 88  LSPDPYRAYARIAQAFYPNPAPEPWVAPTAW------VDASAAVGEGCRIEPGAVIGAGA 141

Query: 72  VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131
            +GA   IG+  V+G  V +G    IG N  +S+ ++G    I+ G  IGQDGFGF +  
Sbjct: 142 RIGARCRIGANVVIGQGVVLGDDCTIGANATVSHALVGSRVNIYPGARIGQDGFGFAMGP 201

Query: 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 191
            G+ LK PQL    IGN+VEIGAN+ IDRG+  DTVIGD S IDNLVQIGHNV +G+ C+
Sbjct: 202 QGH-LKVPQLGRVLIGNNVEIGANTTIDRGAGPDTVIGDGSMIDNLVQIGHNVQLGRGCV 260

Query: 192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251
           +  QVGI+GS  +GD+V  GG+  +  H+ I +  ++AA + V +DI      GG PAVP
Sbjct: 261 IVAQVGISGSTRMGDFVAAGGQAGITGHLKIGAGAKIAAQAGVMRDIAPGETVGGAPAVP 320

Query: 252 IHEWRRQVANQIRSSKKRT 270
           + +W RQ A   + ++K++
Sbjct: 321 MADWLRQSAILGKMARKKS 339

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q1MH46|LPXD_RHIL3 UDP-3-O-acylglucosamine N-acyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=lpxD PE=3 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 142/224 (63%), Gaps = 7/224 (3%)

Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGT------VVGPAVTIGQSTNIGFNVALSN 105
           SA ID +  +E G IV   AV+GA+  IG GT      ++GP V IG+  +I    ++  
Sbjct: 122 SAVIDPSARLEKGVIVEPMAVIGAHAEIGEGTRIGAHSIIGPNVKIGRDCSIAAGASIIC 181

Query: 106 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
            ++G+  IIHNG  IGQDGFG+     G M+K  Q+    I ++VEIGAN+ IDRG+  D
Sbjct: 182 ALLGNGVIIHNGARIGQDGFGYAPGPRG-MIKIVQIGRVIIQDNVEIGANTTIDRGAMDD 240

Query: 166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 225
           TVIG+ +KIDN VQIGHNV IG+ C +   VGIAGSA IG+ V +GG+V ++ HV+I   
Sbjct: 241 TVIGEGTKIDNQVQIGHNVQIGRHCAIVALVGIAGSAKIGNGVQIGGQVGIKGHVTIGDG 300

Query: 226 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           V++AA S +  D+   G YGG P  P++++ R VA Q+  +K R
Sbjct: 301 VQIAAQSGIMTDLAAGGQYGGTPGRPLNDYLRDVAQQMSKTKLR 344

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Rhizobium leguminosarum bv. viciae (strain 3841) (taxid: 216596)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
224078928	234	predicted protein [Populus trichocarpa]	0.856	0.991	0.831	1e-110
225444405	293	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.863	0.798	0.791	1e-108
302144058	289	unnamed protein product [Vitis vinifera]	0.863	0.809	0.791	1e-107
255555019	247	UDP-3-O-[3-hydroxymyristoyl] glucosamine	0.856	0.939	0.810	1e-106
356495807	312	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.892	0.775	0.745	1e-103
124359869	285	Trimeric LpxA-like [Medicago truncatula]	0.837	0.796	0.792	1e-101
297799948	303	bacterial transferase hexapeptide repeat	0.863	0.772	0.747	3e-99
42567003	304	trimeric LpxA-like protein [Arabidopsis	0.896	0.799	0.711	8e-98
449433924	285	PREDICTED: UDP-3-O-acylglucosamine N-acy	0.852	0.810	0.735	9e-98
357154632	288	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.959	0.902	0.664	1e-97

>gi|224078928|ref|XP_002305684.1| predicted protein [Populus trichocarpa] gi|222848648|gb|EEE86195.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/232 (83%), Positives = 213/232 (91%)

Query: 37  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
           +++ KW+NGGG FH+SACID TVLIE+GA+VHSKAVLG NV +GSGTVVGP VTIG ST 
Sbjct: 1   EEYSKWNNGGGTFHKSACIDPTVLIEIGAVVHSKAVLGTNVHVGSGTVVGPEVTIGHSTK 60

Query: 97  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           IG+NV LSNC IGDSC++H+GVCIGQDGFGFFVD+ GNM+KKPQLLNA IG+HVEIGAN+
Sbjct: 61  IGYNVGLSNCRIGDSCVVHHGVCIGQDGFGFFVDDKGNMMKKPQLLNAIIGDHVEIGANT 120

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 216
           CIDRGSWRDTVIGDHSK+DNLVQIGHNV IGK CMLCGQVGIAGS T+GDYVTLGGRVAV
Sbjct: 121 CIDRGSWRDTVIGDHSKLDNLVQIGHNVVIGKGCMLCGQVGIAGSVTMGDYVTLGGRVAV 180

Query: 217 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKK 268
           RDHVSIASKVRLAANSCV KDI EPGDYGGFPAVPIHEWRRQVA++ R SKK
Sbjct: 181 RDHVSIASKVRLAANSCVTKDIREPGDYGGFPAVPIHEWRRQVASRYRISKK 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444405|ref|XP_002265427.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/235 (79%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 35  SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQS 94
           + Q+FQKWHNGGG+FH++ACI+ST LIE+GA+VHS+ V+ ANV IGSGT+VGPAV IG+S
Sbjct: 58  NHQEFQKWHNGGGMFHKTACIESTTLIEIGAVVHSECVVAANVHIGSGTIVGPAVKIGES 117

Query: 95  TNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154
           T I +NV+++NC IGD+C IHNGVCIGQDGFGFFVDEHGNM+KK Q+L+ARIGNHVEIGA
Sbjct: 118 TKIEYNVSVTNCTIGDACFIHNGVCIGQDGFGFFVDEHGNMMKKAQMLSARIGNHVEIGA 177

Query: 155 NSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 214
           N+CIDRGSWRDTVIGDHSKIDNLVQIGHNV IGK+C+LCGQVGIAGS T+GDYVTL GRV
Sbjct: 178 NTCIDRGSWRDTVIGDHSKIDNLVQIGHNVVIGKNCILCGQVGIAGSVTMGDYVTLAGRV 237

Query: 215 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           AVRDHVSI SKVRLAANS V KDI EPGDYGGFPAVPIHEWR+QVA  +++ KKR
Sbjct: 238 AVRDHVSIVSKVRLAANSVVTKDIKEPGDYGGFPAVPIHEWRKQVA-ALQTLKKR 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|302144058|emb|CBI23163.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/235 (79%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 35  SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQS 94
           + Q+FQKWHNGGG+FH++ACI+ST LIE+GA+VHS+ V+ ANV IGSGT+VGPAV IG+S
Sbjct: 54  NHQEFQKWHNGGGMFHKTACIESTTLIEIGAVVHSECVVAANVHIGSGTIVGPAVKIGES 113

Query: 95  TNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154
           T I +NV+++NC IGD+C IHNGVCIGQDGFGFFVDEHGNM+KK Q+L+ARIGNHVEIGA
Sbjct: 114 TKIEYNVSVTNCTIGDACFIHNGVCIGQDGFGFFVDEHGNMMKKAQMLSARIGNHVEIGA 173

Query: 155 NSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 214
           N+CIDRGSWRDTVIGDHSKIDNLVQIGHNV IGK+C+LCGQVGIAGS T+GDYVTL GRV
Sbjct: 174 NTCIDRGSWRDTVIGDHSKIDNLVQIGHNVVIGKNCILCGQVGIAGSVTMGDYVTLAGRV 233

Query: 215 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           AVRDHVSI SKVRLAANS V KDI EPGDYGGFPAVPIHEWR+QVA  +++ KKR
Sbjct: 234 AVRDHVSIVSKVRLAANSVVTKDIKEPGDYGGFPAVPIHEWRKQVA-ALQTLKKR 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555019|ref|XP_002518547.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis] gi|223542392|gb|EEF43934.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/232 (81%), Positives = 206/232 (88%)

Query: 38  QFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 97
           +F KW NGGG+ H+S  ID T L+E+GA+VHSKA LGANV +GSG V+GP VT+GQST I
Sbjct: 14  EFSKWQNGGGVIHKSVHIDPTALVEIGAVVHSKAALGANVYVGSGAVIGPDVTVGQSTKI 73

Query: 98  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC 157
           G+NV+L NC IGDSC+IHNGV IGQDGFGFFVDE G+M+KKPQLLNARIGNHVEIGAN+C
Sbjct: 74  GYNVSLRNCTIGDSCVIHNGVSIGQDGFGFFVDEQGSMVKKPQLLNARIGNHVEIGANTC 133

Query: 158 IDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR 217
           IDRGSWRDTVIGDHSKIDNLVQIGHNV IGK+CMLCGQVGIAGS TIGDYVTLGGRVAVR
Sbjct: 134 IDRGSWRDTVIGDHSKIDNLVQIGHNVVIGKTCMLCGQVGIAGSVTIGDYVTLGGRVAVR 193

Query: 218 DHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           DHVSIAS+VRLAANSCV KDI EPGDYGGFPAVPI EWRRQVA     SKK+
Sbjct: 194 DHVSIASRVRLAANSCVTKDIREPGDYGGFPAVPIREWRRQVAYCCWISKKK 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

>gi|356495807|ref|XP_003516764.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Glycine max]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/244 (74%), Positives = 212/244 (86%), Gaps = 2/244 (0%)

Query: 22  RFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGS 81
           R  + FS    +  +  F KWHNGGG  H+SA IDST L+EVGA+VHS++++G NV IGS
Sbjct: 36  RHLSAFSEDGSVADK--FHKWHNGGGTLHESASIDSTALVEVGAVVHSESIVGPNVRIGS 93

Query: 82  GTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL 141
           GT+VGP+VTI  STNIG+NVALSNC IGDSC+IHNGVCIGQDGFGF+VD  GNM+KKPQ+
Sbjct: 94  GTIVGPSVTIAHSTNIGYNVALSNCCIGDSCVIHNGVCIGQDGFGFYVDGDGNMIKKPQM 153

Query: 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 201
           LN  IGN+VEIGAN+CIDRGSWRDTVIGD+SKIDNLVQIGHNV IGK+C+LCGQVGIAGS
Sbjct: 154 LNVIIGNNVEIGANTCIDRGSWRDTVIGDNSKIDNLVQIGHNVVIGKNCLLCGQVGIAGS 213

Query: 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVAN 261
           ATIGDYVT+GGRVA+RDHVSI SKVRLAA SCV KDI EPGDYGGFPA+ IH+WRRQVA+
Sbjct: 214 ATIGDYVTMGGRVAIRDHVSIISKVRLAAASCVTKDIKEPGDYGGFPAISIHQWRRQVAS 273

Query: 262 QIRS 265
           + ++
Sbjct: 274 RCQA 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|124359869|gb|ABN06168.1| Trimeric LpxA-like [Medicago truncatula]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 203/227 (89%)

Query: 36  RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 95
             +F+KW NGGGIFH+SACIDST  ++VGAIVHS++V+G+NV I SGTVVGP+V+I  ST
Sbjct: 53  EDKFKKWKNGGGIFHESACIDSTAFLDVGAIVHSESVVGSNVRIASGTVVGPSVSIAHST 112

Query: 96  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 155
            IGFNV+LSNC IGDSC+IHNGVCIGQDGFGF+VD  G+M+KKPQ LN  IGN VEIGAN
Sbjct: 113 IIGFNVSLSNCSIGDSCVIHNGVCIGQDGFGFYVDGDGHMIKKPQKLNVIIGNGVEIGAN 172

Query: 156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 215
           +CIDRGSWRDT IGD+SKIDNLVQIGHNV IGK+CMLCGQVGIAGSATIGDYVT+GGRVA
Sbjct: 173 TCIDRGSWRDTFIGDNSKIDNLVQIGHNVVIGKNCMLCGQVGIAGSATIGDYVTMGGRVA 232

Query: 216 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQ 262
           +RDHVSI SKVRLAA SCV KDITEPGDYGGFPAV IH+WRRQVA+ 
Sbjct: 233 IRDHVSITSKVRLAALSCVTKDITEPGDYGGFPAVSIHKWRRQVASS 279

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799948|ref|XP_002867858.1| bacterial transferase hexapeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313694|gb|EFH44117.1| bacterial transferase hexapeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/234 (74%), Positives = 199/234 (85%)

Query: 37  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
           + F +W NGGG  H SA IDS+ L+E GA+VH KAVLGA V +GSGTV+GP+V I  ST 
Sbjct: 70  EGFLRWRNGGGTCHSSALIDSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPSVQISPSTR 129

Query: 97  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           IG+NV+LSNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN VEIGAN+
Sbjct: 130 IGYNVSLSNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQKLNVKIGNRVEIGANT 189

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 216
           CIDRGSWRDTVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGDYV LGGR AV
Sbjct: 190 CIDRGSWRDTVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYVALGGRAAV 249

Query: 217 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRT 270
           RDHVSI SKVRLAANSCV K+ITEPGD+GGFPAVPIHEWR+Q+      +K++T
Sbjct: 250 RDHVSIVSKVRLAANSCVTKNITEPGDFGGFPAVPIHEWRKQIVRAQIVNKRKT 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567003|ref|NP_193854.2| trimeric LpxA-like protein [Arabidopsis thaliana] gi|332659029|gb|AEE84429.1| trimeric LpxA-like protein [Arabidopsis thaliana]

 Score =  362 bits (929), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 173/243 (71%), Positives = 201/243 (82%)

Query: 27  FSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 86
             T   I  ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+G
Sbjct: 61  LKTGGGIIVKEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIG 120

Query: 87  PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARI 146
           P+V IG ST IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +I
Sbjct: 121 PSVDIGPSTRIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKI 180

Query: 147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGD 206
           GN VEIGAN+CIDRGSWR+TVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGD
Sbjct: 181 GNRVEIGANTCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGD 240

Query: 207 YVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSS 266
           YV LGGR AVRDHVSI SKVRLAANSCV ++ITEPGD+GGFPAVPIHEWR+Q+     ++
Sbjct: 241 YVALGGRAAVRDHVSIVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIAN 300

Query: 267 KKR 269
           K+ 
Sbjct: 301 KRE 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433924|ref|XP_004134746.1| PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Cucumis sativus] gi|449530480|ref|XP_004172223.1| PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Cucumis sativus]

 Score =  362 bits (929), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 170/231 (73%), Positives = 200/231 (86%)

Query: 39  FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG 98
           F+ WHNGGG FH SA ID T ++E+GA+VHS +V+G +V IGSG+V+G AVTIGQST IG
Sbjct: 55  FRTWHNGGGTFHHSASIDPTAVVEIGAVVHSNSVVGPSVHIGSGSVIGHAVTIGQSTKIG 114

Query: 99  FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
           FNVALSNC +GD C+IHNGVC+GQDGFGFFVDE G M KKPQ+LN +IG +VEIG+N+CI
Sbjct: 115 FNVALSNCNVGDFCVIHNGVCVGQDGFGFFVDEQGTMKKKPQMLNVKIGMNVEIGSNTCI 174

Query: 159 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 218
           DRGSWRDT+IG+++KIDNLVQIGHNV IG  C+LCGQVGIAGS TIGDYVTLGGRVA+RD
Sbjct: 175 DRGSWRDTIIGNNTKIDNLVQIGHNVIIGDCCLLCGQVGIAGSVTIGDYVTLGGRVAIRD 234

Query: 219 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           HVS+ S VRLAA SCV KDI EPGDYGGFPA+PI  WRRQVA Q ++S+K+
Sbjct: 235 HVSVGSNVRLAALSCVTKDIKEPGDYGGFPAIPISAWRRQVAKQSQASRKK 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154632|ref|XP_003576848.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Brachypodium distachyon]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/265 (66%), Positives = 210/265 (79%), Gaps = 5/265 (1%)

Query: 12  LTKTYKQD-FGRFC----NLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAI 66
           L +T   D   RF     +  S  + I+S  +F  W NGGG+ H++A +D T ++E GA+
Sbjct: 22  LPRTRSADRLARFLGSGVSATSCDAGIDSAAEFVPWRNGGGVMHRAASVDPTAVVEAGAV 81

Query: 67  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG 126
           VHS AVLG  V +GSGTV+GP+V++G ST IG+NV LSNC +G+ C IHNG C+GQDGFG
Sbjct: 82  VHSGAVLGKEVVVGSGTVIGPSVSVGHSTRIGYNVVLSNCSVGEFCTIHNGACVGQDGFG 141

Query: 127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI 186
           FFVDE G + KKPQ+L ARIG++VEIGAN+CIDRGSWRDT+IGD +KIDNLVQIGHNV I
Sbjct: 142 FFVDEDGQIKKKPQVLYARIGDNVEIGANTCIDRGSWRDTLIGDDTKIDNLVQIGHNVVI 201

Query: 187 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG 246
           GK CM+CGQVGIAGSAT+GDYVTLGGRVA+RDHVSIASKVRLAANS V KDI +PGDYGG
Sbjct: 202 GKCCMICGQVGIAGSATLGDYVTLGGRVAIRDHVSIASKVRLAANSLVTKDIQKPGDYGG 261

Query: 247 FPAVPIHEWRRQVANQIRSSKKRTS 271
           FPAVPI+EWRRQ  N    SKK +S
Sbjct: 262 FPAVPINEWRRQTVNLRLFSKKHSS 286

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2127423	304	LpxD2 "lipid X D2" [Arabidopsi	0.885	0.789	0.721	5.3e-95
TIGR_CMR|SO_1639	341	SO_1639 "UDP-3-O-(3-hydroxymyr	0.756	0.601	0.423	4.4e-36
UNIPROTKB|Q9KPW2	351	lpxD "UDP-3-O-acylglucosamine	0.815	0.629	0.398	4.4e-36
TIGR_CMR|VC_2250	351	VC_2250 "UDP-3-O-3-hydroxymyri	0.815	0.629	0.398	4.4e-36
TIGR_CMR|CBU_0613	342	CBU_0613 "UDP-3-O-[3-hydroxymy	0.785	0.622	0.387	7.2e-36
UNIPROTKB|P21645	341	lpxD [Escherichia coli K-12 (t	0.782	0.621	0.4	1.5e-35
TIGR_CMR|GSU_2266	347	GSU_2266 "UDP-3-O-3-hydroxymyr	0.756	0.590	0.410	6.5e-35
TIGR_CMR|CPS_1563	349	CPS_1563 "UDP-3-O-[3-hydroxymy	0.819	0.636	0.388	3.3e-31
TIGR_CMR|CJE_0679	321	CJE_0679 "UDP-3-O-(R-3-hydroxy	0.730	0.616	0.356	7.3e-27
TIGR_CMR|SPO_1930	363	SPO_1930 "UDP-3-O-3-hydroxymyr	0.701	0.523	0.340	1.1e-23

TAIR|locus:2127423 LpxD2 "lipid X D2" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 174/241 (72%), Positives = 202/241 (83%)

Query:    29 TKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA 88
             T   I  ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+GP+
Sbjct:    63 TGGGIIVKEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPS 122

Query:    89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 148
             V IG ST IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN
Sbjct:   123 VDIGPSTRIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKIGN 182

Query:   149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV 208
              VEIGAN+CIDRGSWR+TVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGDYV
Sbjct:   183 RVEIGANTCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYV 242

Query:   209 TLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVAN-QIRSSK 267
              LGGR AVRDHVSI SKVRLAANSCV ++ITEPGD+GGFPAVPIHEWR+Q+   QI + +
Sbjct:   243 ALGGRAAVRDHVSIVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIANKR 302

Query:   268 K 268
             +
Sbjct:   303 E 303

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043764 "UDP-3-O-[3-hydroxymyristoyl

GO:2001289 "lipid X metabolic process" evidence=IMP

TIGR_CMR|SO_1639 SO_1639 "UDP-3-O-(3-hydroxymyristoyl) glucosamine n-acyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 88/208 (42%), Positives = 121/208 (58%)

Query:    52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD 110
             SA +   V I   A++ +  +LG NV IG+GTV+G    IG +T +  NV L  N  +G 
Sbjct:   109 SAQLGDGVAIGANAVIGANVILGENVQIGAGTVIGQDSIIGSNTRLWANVTLYHNVHLGQ 168

Query:   111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170
              CIIH+G  IG DGFG+  +E G  +K PQ    RIG+ VEIGANS IDRG+   T I +
Sbjct:   169 DCIIHSGAIIGSDGFGY-ANERGQWIKIPQTGGVRIGDRVEIGANSTIDRGALGHTEIHN 227

Query:   171 HSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230
                IDN VQ+ HN  IG++  + G   IAGS TIG +  +GG  A+  H++IA  V L+ 
Sbjct:   228 GVIIDNQVQVAHNDIIGENTAIAGSTTIAGSVTIGKHCIIGGNCAIAGHLTIADGVHLSG 287

Query:   231 NSCVFKDITEPGDYGGFP-AVPIHEWRR 257
              + V  ++ EPG Y     A+  + WR+
Sbjct:   288 ATNVTGNMREPGLYSSATVAMDNNLWRK 315

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPW2 lpxD "UDP-3-O-acylglucosamine N-acyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 90/226 (39%), Positives = 122/226 (53%)

Query:    48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +  + A +   V I   A++ S   LG NV IG+G  +G    +G +T +  NV + + +
Sbjct:   105 VIAEDAKLGHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKV 164

Query:   108 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
              IG  C+I +G  IG DGFG+  +E G  +K PQL + RIG+ VEIGA + IDRG+  DT
Sbjct:   165 EIGSDCLIQSGTVIGADGFGY-ANERGEWIKIPQLGSVRIGDRVEIGACTTIDRGALDDT 223

Query:   167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
             VI D+  IDN +QI HNV IG    L G   IAGS  IG Y  +GG   +  H+ IA  V
Sbjct:   224 VIEDNVIIDNQLQIAHNVHIGYGSALAGGTVIAGSTRIGKYCIIGGASVINGHIEIADGV 283

Query:   227 RLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVA--NQIRSSKKR 269
              +     V + I E G Y  G P     EWR+  A  ++I    KR
Sbjct:   284 TITGMGMVMRSIEEKGMYSSGIPLQTNKEWRKTAARVHRIDDMHKR 329

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|VC_2250 VC_2250 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 90/226 (39%), Positives = 122/226 (53%)

Query:    48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +  + A +   V I   A++ S   LG NV IG+G  +G    +G +T +  NV + + +
Sbjct:   105 VIAEDAKLGHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKV 164

Query:   108 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
              IG  C+I +G  IG DGFG+  +E G  +K PQL + RIG+ VEIGA + IDRG+  DT
Sbjct:   165 EIGSDCLIQSGTVIGADGFGY-ANERGEWIKIPQLGSVRIGDRVEIGACTTIDRGALDDT 223

Query:   167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
             VI D+  IDN +QI HNV IG    L G   IAGS  IG Y  +GG   +  H+ IA  V
Sbjct:   224 VIEDNVIIDNQLQIAHNVHIGYGSALAGGTVIAGSTRIGKYCIIGGASVINGHIEIADGV 283

Query:   227 RLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVA--NQIRSSKKR 269
              +     V + I E G Y  G P     EWR+  A  ++I    KR
Sbjct:   284 TITGMGMVMRSIEEKGMYSSGIPLQTNKEWRKTAARVHRIDDMHKR 329

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0613 CBU_0613 "UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 86/222 (38%), Positives = 124/222 (55%)

Query:    46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 105
             GGI H +A + +   I+  A + +  V+  +V IG  T++G   +IG+ + IG +  L +
Sbjct:   101 GGI-HPTAVVGANCQIDPSAHIGAHVVIEEDVVIGPRTLIGAGASIGRGSQIGSDCCLHS 159

Query:   106 CI-------IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
              +       IGD  IIH+G  IG DGFG   DE G  +K PQ+    IG+ VEIGAN+ I
Sbjct:   160 RVTLYSQTRIGDRSIIHSGAVIGADGFGLIQDEKGEWVKIPQVGRVIIGDDVEIGANATI 219

Query:   159 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 218
             DRG+  DTVIG+  KID+LV I HNV IG   ++ G  G+AGS T+G +  +G    +  
Sbjct:   220 DRGALDDTVIGNGVKIDDLVMIAHNVRIGDHTVIAGCAGVAGSTTVGRHCMIGASAGLNG 279

Query:   219 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH-EWRRQV 259
             H+ I   V +     + K IT+PG Y     +  + EWR+ V
Sbjct:   280 HIEICDNVIITGMGMIQKSITKPGIYSSGTGMQTNREWRKSV 321

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|P21645 lpxD [Escherichia coli K-12 (taxid:83333)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 86/215 (40%), Positives = 120/215 (55%)

Query:    48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +   +A + + V I   A++ S   LG NV IG+G  VG    IG  + +  NV + + I
Sbjct:   105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query:   108 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
              IG +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  DT
Sbjct:   165 QIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDT 223

Query:   167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
             +IG+   IDN  QI HNV IG +  + G V +AGS  IG Y  +GG   +  H+ I  KV
Sbjct:   224 IIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKV 283

Query:   227 RLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVA 260
              +     V + ITEPG Y  G P  P   WR+  A
Sbjct:   284 TVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAA 318

GO:0016410 "N-acyltransferase activity" evidence=IDA

GO:0009245 "lipid A biosynthetic process" evidence=IEA;IMP

GO:0046677 "response to antibiotic" evidence=IEA

TIGR_CMR|GSU_2266 GSU_2266 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 85/207 (41%), Positives = 111/207 (53%)

Query:    55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCI 113
             + S + I  GA+V     +G  V +  G V+   VT+G    +  NV +   C IG+   
Sbjct:   112 LGSEITIHPGAVVGDNVTIGDRVTLHPGVVLYEGVTVGDDVTLHANVTVYQGCRIGNRVT 171

Query:   114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
             IH G  IG DGFG+  D  G   K PQL N  I + VEIGAN+ IDR +   TVIG  +K
Sbjct:   172 IHGGTIIGSDGFGYAPDGDG-WYKIPQLGNVVIEDDVEIGANAAIDRAALASTVIGKGTK 230

Query:   174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
             +DNLV I HN  IG++CM+  QVGI+GS  +G  VTLGG+V V  H+ I     + A S 
Sbjct:   231 VDNLVMIAHNCVIGENCMIVSQVGISGSTKLGRRVTLGGQVGVAGHLEIGDNAMIGAKSG 290

Query:   234 VFKDITEPGDYGGFPAVPIHEWRRQVA 260
             V  ++       G PA    EW R  A
Sbjct:   291 VPGNVPSGTIMSGIPAFDHREWLRASA 317

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=ISS

TIGR_CMR|CPS_1563 CPS_1563 "UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 91/234 (38%), Positives = 125/234 (53%)

Query:    47 GIFHQSACIDSTVLI----EVGA--IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 100
             GI H +A I   VLI     VGA  ++ S   L  NV IG+G  +G    IG+ST +  N
Sbjct:   106 GI-HPNAVIADDVLIGENVSVGANTVIESGVQLADNVSIGAGCFIGHGAKIGESTILWAN 164

Query:   101 VALSNCI-IGDSCIIHNGVCIGQDGFGFF-VDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
             + + + + IG  C+I     IG DGFG+  V       K PQL +  IG+HVEIGA++ I
Sbjct:   165 ITIYHRVEIGHHCLIQASTVIGSDGFGYAPVKGQYKWHKIPQLGSVIIGDHVEIGASTTI 224

Query:   159 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 218
             DRG+  +T I D   +DN +QI HNV +G++  + G   IAGS  IG   T+ G V V  
Sbjct:   225 DRGALDNTEIRDGVILDNQIQIAHNVIVGENTAIAGCTVIAGSTVIGKNCTIAGLVGVNG 284

Query:   219 HVSIASKVRLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVAN--QIRSSKKR 269
             H++IA        S V K+I++ G Y  G P V   EW +  A   ++ S  KR
Sbjct:   285 HITIADNCVFTGMSMVTKNISQAGVYSSGMPVVQNKEWNKTNARVKRLDSLTKR 338

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0679 CJE_0679 "UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 71/199 (35%), Positives = 110/199 (55%)

Query:    73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIGQDGFGFFVDE 131
             +G NV I +G  +G  V+IG  + I  NV + N   IG  C +     IG DGFG+  ++
Sbjct:   121 IGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKKCHLLANCVIGSDGFGYAHNK 180

Query:   132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 191
             +G   K     N  + + VE+GA + IDR  +  T+I   +K+DNLVQIGHN  IG++C+
Sbjct:   181 NGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIKAGTKVDNLVQIGHNCNIGQNCI 240

Query:   192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251
             +  Q GI+GS+ +G  V +GG+ A   H+ I     +AA   V K++     YGGFP + 
Sbjct:   241 IVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFSTIAARGGVSKNLEGGRVYGGFPIML 300

Query:   252 IHEWRRQVANQIRSSKKRT 270
               +W +  A    + K+++
Sbjct:   301 QKDWLKLQAKIAINFKEKS 319

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016410 "N-acyltransferase activity" evidence=ISS

TIGR_CMR|SPO_1930 SPO_1930 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/197 (34%), Positives = 99/197 (50%)

Query:    61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN-VALSNCIIG-DSCIIHNGV 118
             I  G+++    V+G +  +G G  +   V+IG    IG   +A     IG D        
Sbjct:   131 IGAGSVIGPHCVIGMDAVLGEGAWLREMVSIGARATIGARFIAQPGARIGGDGFSFVTPE 190

Query:   119 CIGQDGFGFFVDEHGNMLKKP----QLLNA-RIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
               G +     + + G    +       L A  IG+ VE+GAN  +D G+ R+T IGD SK
Sbjct:   191 VSGAENARKTMGDQGEAKAQAWTRIHSLGAVEIGDDVEVGANCTVDNGTIRNTCIGDGSK 250

Query:   174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
             +DNLV +GHN  IG+ C+LCGQ G++GS  IG+ V LGG+  V D++ I   V     S 
Sbjct:   251 LDNLVHVGHNTRIGRDCLLCGQTGVSGSVEIGNNVVLGGQTGVVDNIYIGDGVIAGGGSK 310

Query:   234 VFKDITEPGDYGGFPAV 250
             +  ++       G+PAV
Sbjct:   311 ILSNVPAGRVIMGYPAV 327

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016410 "N-acyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JIP6	LPXD2_ARATH	2, ., 3, ., 1, ., -	0.7119	0.8966	0.7993	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.2364.1	hypothetical protein (234 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.6418.1	hypothetical protein (277 aa)	•		•			•	•		0.986
	eugene3.00030074	SubName- Full=Putative uncharacterized protein; (238 aa)	•			•		•	•		0.965
	gw1.I.9894.1	hypothetical protein (104 aa)	•			•			•		0.927
	estExt_fgenesh4_pg.C_LG_VI0968	hypothetical protein (365 aa)	•		•	•	•	•	•	•	0.912
	eugene3.00160899	hypothetical protein (446 aa)	•		•				•		0.898
	gw1.XIII.2878.1	hypothetical protein (392 aa)	•		•				•		0.885
	estExt_fgenesh4_pg.C_LG_V1151	3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase (EC-2.5.1.55) (290 aa)	•		•				•		0.788
	estExt_fgenesh4_pg.C_LG_II0575	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•				•		0.787
	fgenesh4_pm.C_LG_XIV000511	hypothetical protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to [...] (323 aa)	•			•			•		0.781
	eugene3.01070060	CMP-KDO synthetase (288 aa)	•		•				•		0.722

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	9e-92
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	5e-82
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	1e-78
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	5e-73
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	3e-23
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	1e-22
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	1e-20
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	2e-19
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	5e-15
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	2e-12
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	3e-11
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	4e-10
PRK10502	182	PRK10502, PRK10502, putative acyl transferase; Pro	2e-09
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	2e-09
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	3e-09
PRK09451	456	PRK09451, glmU, bifunctional N-acetylglucosamine-1	1e-08
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	5e-08
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	2e-07
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	4e-07
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	6e-07
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	8e-07
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	9e-07
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	1e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	2e-06
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	3e-06
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	4e-06
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	6e-06
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	6e-06
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	7e-06
COG2171	271	COG2171, DapD, Tetrahydrodipicolinate N-succinyltr	9e-06
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	1e-05
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	1e-05
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	2e-05
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	3e-05
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	3e-05
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	8e-05
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	8e-05
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	9e-05
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	1e-04
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	1e-04
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	2e-04
cd04646	164	cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p2	2e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	3e-04
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	3e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	4e-04
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	5e-04
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	6e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	7e-04
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	0.001
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	0.001
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	0.001
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.001
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	0.002
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	0.002
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	0.002
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	0.002
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	0.002
PRK14352	482	PRK14352, glmU, bifunctional N-acetylglucosamine-1	0.003
PLN02739	355	PLN02739, PLN02739, serine acetyltransferase	0.003
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	0.004
COG4801	277	COG4801, COG4801, Predicted acyltransferase [Gener	0.004

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score =  274 bits (703), Expect = 9e-92
 Identities = 100/213 (46%), Positives = 125/213 (58%), Gaps = 3/213 (1%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
             SA I   V I   A++ +  V+G  V IG+G V+G  V IG    +  NV +     I
Sbjct: 110 DPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRI 169

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G+  IIH+G  IG DGFGF  ++ G  +K PQL    IG+ VEIGAN+ IDRG+  DTVI
Sbjct: 170 GNRVIIHSGAVIGSDGFGF-ANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVI 228

Query: 169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228
           G+  KIDNLVQI HNV IG+   +  QVGIAGS  IG Y  +GG+V +  H+ I   V +
Sbjct: 229 GEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTI 288

Query: 229 AANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 260
            A S V K I EPG+Y  G PA P  EW R  A
Sbjct: 289 TAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAA 321

Length = 343

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score =  245 bits (627), Expect = 5e-82
 Identities = 100/206 (48%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD 110
           SA I   V I   A++    V+G  V IG G V+G  V IG    I  NV +   CIIGD
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170
             IIH+G  IG DGFGF   + G  +K PQL    IG+ VEIGAN+ IDRG+  DTVIGD
Sbjct: 61  RVIIHSGAVIGSDGFGF-APDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGD 119

Query: 171 HSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230
            +KIDNLVQI HNV IG++C++  QVGIAGS TIGD V +GG+V +  H++I   V + A
Sbjct: 120 GTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGA 179

Query: 231 NSCVFKDITEPGDYGGFPAVPIHEWR 256
            S V   +       G PA P  EW 
Sbjct: 180 GSGVTSIVPPGEYVSGTPAQPHREWL 205

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score =  240 bits (615), Expect = 1e-78
 Identities = 96/212 (45%), Positives = 125/212 (58%), Gaps = 1/212 (0%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
             SA I   V I    ++ +   +G NV IG G V+G  V IG  + I  NV +     +
Sbjct: 101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQL 160

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G + IIH+G  IG DGFG+    +G  +K PQ+    I + VEIGAN+ IDRG++ DT+I
Sbjct: 161 GKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTII 220

Query: 169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228
           G+ +KIDNLVQI HN  IG++C++  QVGIAGS  IG  V +GG+V V  H+ I   V +
Sbjct: 221 GEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTI 280

Query: 229 AANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 260
            A S V K I  PG YGG PA P  EW R  A
Sbjct: 281 GAKSGVTKSIPPPGVYGGIPARPNKEWLRIAA 312

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score =  226 bits (579), Expect = 5e-73
 Identities = 106/224 (47%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 47  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SN 105
            +   +A I   V I    ++ +  V+G NV IG+G V+G  V IG  T I  NV +  N
Sbjct: 106 AVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN 165

Query: 106 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
            +IG++ IIH+G  IG DGFG+     G  +K PQ+    IG+ VEIGAN+ IDRG+  D
Sbjct: 166 VVIGNNVIIHSGAVIGADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDD 224

Query: 166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 225
           TVIG+  KIDNLVQIGHNV IG+ C++ GQVGIAGS  IG YV +GG+V +  H+ I   
Sbjct: 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDG 284

Query: 226 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           V + A S V   ITEPG  GG PA PI EW +  A   R  + R
Sbjct: 285 VTIGARSGVMASITEPGYSGGIPAQPIKEWLKTAALIRRLPEMR 328

Length = 338

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 94.8 bits (237), Expect = 3e-23
 Identities = 55/185 (29%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 123
           AIV   A +G NV IG   V+GP V IG  T IG +V +     IG +  I     IG+ 
Sbjct: 6   AIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEA 65

Query: 124 GFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD---TVIGDHSK 173
                          PQ L  +       IG++  I     I RG+ +    T IG+++ 
Sbjct: 66  ---------------PQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNL 110

Query: 174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           +   V + H+  IG + +L     +AG   IGDY  +GG  AV     I     +   S 
Sbjct: 111 LMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSG 170

Query: 234 VFKDI 238
           V +D+
Sbjct: 171 VVQDV 175

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 93.2 bits (233), Expect = 1e-22
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 26/185 (14%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 123
           AIV   A +G NV IG   V+GP V IG  T IG +V +  +  IG +  I     IG+D
Sbjct: 9   AIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGED 68

Query: 124 GFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD---TVIGDHSK 173
                          PQ L  +       IG++  I     I+RG+ +    T IGD++ 
Sbjct: 69  ---------------PQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNL 113

Query: 174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           +   V + H+  +G   +L     +AG   +GDY  +GG  AV   V I +   +   S 
Sbjct: 114 LMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSG 173

Query: 234 VFKDI 238
           V +D+
Sbjct: 174 VSQDV 178

Length = 262

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 56  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCII 114
                I   AI+   A +G +V IG   ++GP V IG  T +  +V +  +  IG +  I
Sbjct: 1   MKMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRI 60

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD-- 165
                IG+D               PQ L  +       IG++  I     I RG+ +   
Sbjct: 61  FPFASIGED---------------PQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGG 105

Query: 166 -TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 224
            T IGD++ I     + H+  IG +C+L     +AG   +GDY  +GG  AV   V I +
Sbjct: 106 VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGA 165

Query: 225 KVRLAANSCVFKDITEPGDYGGFPAVP 251
              +   S V +D+       G  A  
Sbjct: 166 HAMIGGLSAVSQDVPPYVIASGNHARL 192

Length = 260

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 84.6 bits (210), Expect = 2e-19
 Identities = 55/199 (27%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 123
           AI+   A +G NV IG   +VGP V IG    +  +V +  +  IG+   I  G  IG  
Sbjct: 5   AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGV 64

Query: 124 GFGFFVDEHGNMLKKPQLLN-------ARIGNHVEIGANSCIDRGSWRD---TVIGDHSK 173
                          PQ L          IG++  I     I+RG+      T IG+++ 
Sbjct: 65  ---------------PQDLKYKGEKTRLIIGDNNTIREFVTINRGTASGGGVTRIGNNNL 109

Query: 174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           +     I H+  +G   +L     +AG   +GDY  +GG VAV   V I     +   S 
Sbjct: 110 LMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSA 169

Query: 234 VFKDITEPGDYGGFPAVPI 252
           V KD+       G  A   
Sbjct: 170 VSKDVPPYCLAEGNRARLR 188

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 33/197 (16%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG 109
           H +A ID +  +  G  +   AV+GANV IG GT +GP   I   T IG N         
Sbjct: 3   HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKN--------- 53

Query: 110 DSCIIHNGVCIGQD--GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
               IH G  +G +   F +          K +     IG+   I     I RG+    V
Sbjct: 54  --NKIHQGAVVGDEPQDFTY----------KGEESRLEIGDRNVIREGVTIHRGTKGGGV 101

Query: 168 --IGDHSKIDNL----VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 221
             IG+    DNL      + H+  IG + +L     +AG  T+GD   + G   V     
Sbjct: 102 TRIGN----DNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCR 157

Query: 222 IASKVRLAANSCVFKDI 238
           I +   +A  S + KD+
Sbjct: 158 IGALAMMAGGSRISKDV 174

Length = 255

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 144 ARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 201
           A +     IG    I  G+    D  IGD+  I+    IGH+  IG    +   V ++G 
Sbjct: 91  AVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG 150

Query: 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFP 248
            TIG+   +G    +   V+I +   + A + V KD+ +     G P
Sbjct: 151 VTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSA 202
           +A IG    I A + I+     D  IGD+  I+    + H+  IG    +   V ++G  
Sbjct: 90  SASIGEGTVIMAGAVINP----DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGV 145

Query: 203 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 249
            IG+ V +G    +   V+I +   + A + V KDI + G   G PA
Sbjct: 146 VIGEGVFIGAGATIIQGVTIGAGAVVGAGAVVTKDIPDGGVVVGVPA 192

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 37/190 (19%)

Query: 1   MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVL 60
            A    V+ Y   + Y  D G   +L      +          +  G   +   I  +  
Sbjct: 203 AAKGEDVYGYV-FEGYWLDIGTPEDLLEANELLLRG----DGKSPLGPIEEPVVIIRSAY 257

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           I    ++   A +G    IG  TV+G  VTIG    I       N II D+ +I +G  I
Sbjct: 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI------KNSIIMDNVVIGHGSYI 311

Query: 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI 180
           G                     ++ IG + +IGA+  I      D VIG +S+I   V +
Sbjct: 312 G---------------------DSIIGENCKIGASLII-----GDVVIGINSEILPGVVV 345

Query: 181 GHNVAIGKSC 190
           G    +    
Sbjct: 346 GPGSVVESGE 355

Length = 358

>gnl|CDD|236703 PRK10502, PRK10502, putative acyl transferase; Provisional

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 40/138 (28%), Positives = 51/138 (36%), Gaps = 33/138 (23%)

Query: 141 LLNARIGNHVEIGANSCIDRGS------WRDTV-----IGDHSKIDNL--VQIGHNVAIG 187
           L  A+IG  V I       R S      W+ T+     IGD   + NL  + IG +  I 
Sbjct: 49  LFGAKIGKGVVI-------RPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVIS 101

Query: 188 KSCMLCGQVG-----------IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 236
           +   LC   G                 IG+   L   V V   V+I S   + A S VFK
Sbjct: 102 QKSYLCT--GSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFK 159

Query: 237 DITEPGDYGGFPAVPIHE 254
            +       G PAVPI  
Sbjct: 160 SLPANTICRGNPAVPIRP 177

Length = 182

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 49/204 (24%), Positives = 72/204 (35%), Gaps = 54/204 (26%)

Query: 58  TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG 117
           T  I+ G ++     +   VCI   T +G   TI Q       V +  C IGD   +  G
Sbjct: 262 TTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQ------GVVIKGCRIGDDVTVKAG 315

Query: 118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 177
                                  L ++ +G+ V IG  + +  G    T +  H KI N 
Sbjct: 316 SV---------------------LEDSVVGDDVAIGPMAHLRPG----TELSAHVKIGNF 350

Query: 178 VQ----------------------IGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRV 214
           V+                      IG NV IG   + C   G+    T I D V +G  V
Sbjct: 351 VETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDV 410

Query: 215 AVRDHVSIASKVRLAANSCVFKDI 238
                V++     +AA + V KD+
Sbjct: 411 QFVAPVTVGRNSLIAAGTTVTKDV 434

Length = 459

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 55/196 (28%), Positives = 76/196 (38%), Gaps = 38/196 (19%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           I   V I+   I+  K  +G +V IG G V+  +V IG +  I     L    IG+ C +
Sbjct: 264 IGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSV-IGSNVVIKAYSVLEGSEIGEGCDV 322

Query: 115 HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 171
                      G F       G++L         IGN VE            ++  IG  
Sbjct: 323 -----------GPFA--RLRPGSVLGA----GVHIGNFVET-----------KNARIGKG 354

Query: 172 SKIDNL-----VQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASK 225
           SK  +L      +IG NV IG   + C   G     T IGD V +G    +   V +   
Sbjct: 355 SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDG 414

Query: 226 VRLAANSCVFKDITEP 241
             +AA S V KD+ E 
Sbjct: 415 ATIAAGSTVTKDVPEG 430

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 57/212 (26%), Positives = 80/212 (37%), Gaps = 41/212 (19%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIH--- 115
           V I+   I+     LG  V IG+G V                  L NC+IGD C I    
Sbjct: 272 VEIDTNVIIEGNVTLGNRVKIGAGCV------------------LKNCVIGDDCEISPYS 313

Query: 116 --NGVCIGQD-GFGFFVD-EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIG 169
                 +G     G F     G  L +     A +GN VE+   + + +GS     T +G
Sbjct: 314 VVEDANLGAACTIGPFARLRPGAELAE----GAHVGNFVEM-KKARLGKGSKAGHLTYLG 368

Query: 170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRL 228
           D        +IG NV IG   + C   G     T IGD V +G    +   V++     +
Sbjct: 369 D-------AEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421

Query: 229 AANSCVFKDITEPG-DYGGFPAVPIHEWRRQV 259
            A + V +D+ E        P   I  W+R V
Sbjct: 422 GAGTTVTRDVAENELVISRVPQRHIQGWQRPV 453

Length = 456

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 25/117 (21%)

Query: 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNL--VQIGHNVAIGKSCMLCGQVG--------- 197
           ++ IG NS I          G+   I NL  V IG +  I +   LC   G         
Sbjct: 3   NLTIGDNSWI----------GEGVWIYNLAPVTIGSDACISQGAYLCT--GSHDYRSPAF 50

Query: 198 --IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
             I     IGD   +     V   V+I     + A S V +D+     Y G PAVP+
Sbjct: 51  PLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 146 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA------ 199
           IG++  IG N  I+     D  IGD+ KI + V I   V I     +   V         
Sbjct: 1   IGDNCIIGTNVFIE----NDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR 56

Query: 200 ---------GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAV 250
                       T+    ++G    +   V+I     + A + V KD+       G PA 
Sbjct: 57  SKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPAR 116

Query: 251 PI 252
            I
Sbjct: 117 II 118

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 45/215 (20%)

Query: 40  QKWHNGGGIFHQ--SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 97
           +KW   G  F    S  I  TV +    I+  +  L  N  IGSG  +GP   I +++ I
Sbjct: 242 EKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLI-ENSQI 300

Query: 98  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL-LNARIGNHVEIGANS 156
           G NV +   ++ DS  I +GV IG          + ++  + Q+  N RIGN VEI    
Sbjct: 301 GENVTVLYSVVSDS-QIGDGVKIG---------PYAHLRPEAQIGSNCRIGNFVEI---- 346

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-AGSAT------------ 203
                  + + +G+ SK+++L  IG +  +G+      QV I AG+ T            
Sbjct: 347 -------KKSQLGEGSKVNHLSYIG-DATLGE------QVNIGAGTITANYDGVKKHRTV 392

Query: 204 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI 238
           IGD    G    +   +++   V +AA S + KD+
Sbjct: 393 IGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDV 427

Length = 450

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 48.2 bits (116), Expect = 6e-07
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 32/141 (22%)

Query: 32  DIESRQQFQKWHNGGG-----IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG------ 80
           D + R++  +     G     + H SA +  + +I  G ++ + AV+  +  IG      
Sbjct: 65  DNKLRRKLAEKLLAAGYRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIIN 124

Query: 81  SGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP 139
           +G V+G    IG   +I   V LS    IG+   I  G  I                   
Sbjct: 125 TGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI-----------------IQ 167

Query: 140 QLLNARIGNHVEIGANSCIDR 160
            +    IG    IGA + + +
Sbjct: 168 GV---TIGAGAIIGAGAVVTK 185

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 37/128 (28%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
           + H SA +  +  I  G ++ + AV+  +V IG   ++     +             +C+
Sbjct: 80  LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEH-----------DCV 128

Query: 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
           IGD   I  GV +   G                     IG  V IGA + I        V
Sbjct: 129 IGDYVHIAPGVTLS--G------------------GVVIGEGVFIGAGATI-----IQGV 163

Query: 168 -IGDHSKI 174
            IG  + +
Sbjct: 164 TIGAGAVV 171

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 50/200 (25%), Positives = 72/200 (36%), Gaps = 42/200 (21%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP-----AVTIGQSTNIGFNVALSNCIIG 109
           I   V I    ++    +L  N  IG   V+GP        IG +  I     +    +G
Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVG 324

Query: 110 DSCIIHNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
           +   +           G F       G +L      +  IGN VE+           +  
Sbjct: 325 EGATV-----------GPFA--RLRPGAVLGA----DVHIGNFVEV-----------KKA 356

Query: 167 VIGDHSKIDNL-----VQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHV 220
            IG  SK  +L      +IG NV IG   + C   G     T IGD V +G    +   V
Sbjct: 357 TIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPV 416

Query: 221 SIASKVRLAANSCVFKDITE 240
           +I     +AA S + KD+ E
Sbjct: 417 TIGDGATIAAGSTITKDVPE 436

Length = 460

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 19/96 (19%)

Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           I  G  +GP + I   T I   V     +IGD+C I+ GV +G  G G     H      
Sbjct: 5   IHPGAKIGPGLFIDHGTGI---VIGETAVIGDNCTIYQGVTLGGKGKG-GGKRH------ 54

Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                  IG++V IGA + I  G   +  IGD+ KI
Sbjct: 55  -----PTIGDNVVIGAGAKI-LG---NITIGDNVKI 81

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 51/200 (25%), Positives = 73/200 (36%), Gaps = 40/200 (20%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID  V I V  ++    +L     IG   V+GP   I             +  IGD  +I
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK------------DSTIGDGVVI 59

Query: 115 HNGVCIGQDGFGFFVD-------EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
                I     G             G +L +       IGN VEI           + + 
Sbjct: 60  KASSVIEGAVIGNGATVGPFAHLRPGTVLGE----GVHIGNFVEI-----------KKST 104

Query: 168 IGDHSKIDNL-----VQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVS 221
           IG+ SK ++L      +IG  V IG   + C   G+    T IGD V +G    +   V+
Sbjct: 105 IGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVT 164

Query: 222 IASKVRLAANSCVFKDITEP 241
           I     +AA S + KD+   
Sbjct: 165 IGDGATIAAGSTITKDVPPG 184

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           I  G  +G  + I   T +   V     +IGD   I++GV +G  G       H      
Sbjct: 70  IHPGAKIGRGLFIDHGTGV---VIGETAVIGDDVTIYHGVTLGGTG-KESGKRH------ 119

Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                  IGN V IGA + I      +  IGD++KI
Sbjct: 120 -----PTIGNGVYIGAGAKI----LGNIEIGDNAKI 146

Length = 194

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 48  IFHQSACIDSTVLIEVGAIVH----SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103
                A +  +++ E G I+     S +VLG  V IGSG+ V  +V +G    IG    +
Sbjct: 285 FVDSDAQVVDSLVSE-GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVG-IGRGAVI 342

Query: 104 SNCIIGDSCIIHNGVCIG 121
            N II  +  I  GV IG
Sbjct: 343 RNAIIDKNVRIGEGVVIG 360

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 46/205 (22%)

Query: 55  ID-STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCI 113
           ID  +  I+    + S  V+   V I   TV+G    IG  + I       +  IGD   
Sbjct: 255 IDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRI------VDSTIGDGVT 308

Query: 114 IHNGVCIGQDGFGFFVDEH-----------GNMLKKPQLLNARIGNHVEIGANSCIDRGS 162
           I N V          V ++           G+++ +      +IGN VEI          
Sbjct: 309 ITNSVIEESK-----VGDNVTVGPFAHLRPGSVIGE----EVKIGNFVEI---------- 349

Query: 163 WRDTVIGDHSKIDNLVQIGHNVAIGKSCML-CGQV-----GIAGSAT-IGDYVTLGGRVA 215
            + + IG+ +K+ +L  IG +  +G++  + CG +     G     T IGD   +G    
Sbjct: 350 -KKSTIGEGTKVSHLTYIG-DAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407

Query: 216 VRDHVSIASKVRLAANSCVFKDITE 240
           +   V++     +AA S + KD+ E
Sbjct: 408 LVAPVTVGDNAYIAAGSTITKDVPE 432

Length = 458

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 55  IDSTVLIEVGAIVHSKA----VLGANVCIGSGTVV-GPAVTIGQSTNIGFNVALSNCIIG 109
           I + V I+ G ++H+       +G NV I  G +V GPA  IG +  IGF   + N  +G
Sbjct: 45  IGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA-YIGDNCFIGFRSVVFNAKVG 103

Query: 110 DSCII-HNGVCIGQDGF-GFFV 129
           D+C+I HN V  G +   G +V
Sbjct: 104 DNCVIGHNAVVDGVEIPPGRYV 125

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 64  GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123
           G + +S  VL   V IG G+V+  +V I     IG    L   II  + +I  GV IG D
Sbjct: 307 GTVENS--VLFRGVRIGKGSVIENSV-IMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363

Length = 393

>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--------PAVTIGQSTNIGFN-VAL 103
           A      +++  A V S A +G N  IG G  +G          V IG +  IG N   +
Sbjct: 139 AGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVV 198

Query: 104 SNCIIGDSCIIHNGVCIGQD 123
              I+GD C++  GV I QD
Sbjct: 199 EGVIVGDGCVVAAGVFITQD 218

Length = 271

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           I  G + +S  VL   V +GSG+VV  +V I  +  IG N  +   II  + +I +GV I
Sbjct: 21  ISGGTVENS--VLFRGVRVGSGSVVEDSV-IMPNVGIGRNAVIRRAIIDKNVVIPDGVVI 77

Query: 121 G----QDGFGFFVDEHG 133
           G    +D   F+V E G
Sbjct: 78  GGDPEEDRARFYVTEDG 94

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 41/151 (27%), Positives = 56/151 (37%), Gaps = 39/151 (25%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVALSNCII 108
           I   V I  GAIV S A +   V IG G  +GP         +G    +G +V + N II
Sbjct: 14  IKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSII 73

Query: 109 ------------GDSCIIHNGVCIGQ---------DGFGFFVDEHGNM----LKKPQLLN 143
                       GDS ++   V +G          D     V   G       +K   L 
Sbjct: 74  MDGTKVPHLNYVGDS-VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRK---LG 129

Query: 144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
           A IG+ V+ G N  ++ G      IG  S +
Sbjct: 130 AIIGDGVKTGINVSLNPG----VKIGPGSWV 156

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 27/192 (14%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSC-- 112
           I   V I +  I++    +     IG    +GP   I     IG NV     II   C  
Sbjct: 252 IHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDC-EIGNNVK----IIRSECEK 306

Query: 113 -IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIG 169
            +I + V +G     F     G +LKK    + +IGN VEI   S I   +     T +G
Sbjct: 307 SVIEDDVSVGP----FSRLREGTVLKK----SVKIGNFVEI-KKSTIGENTKAQHLTYLG 357

Query: 170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRL 228
           D         +G NV IG   + C   G   + T I D   +G   ++   V I     +
Sbjct: 358 D-------ATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALI 410

Query: 229 AANSCVFKDITE 240
            A S + +D+  
Sbjct: 411 GAGSVITEDVPP 422

Length = 448

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 32/123 (26%), Positives = 43/123 (34%), Gaps = 27/123 (21%)

Query: 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCG-------- 194
           N  IG++V IG    I  G                + IG NV IG +  +          
Sbjct: 1   NISIGDNVYIGPGCVISAG--------------GGITIGDNVLIGPNVTIYDHNHDIDDP 46

Query: 195 -----QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 249
                Q   +    IGD V +G  V +   V+I     + A S V KD+       G PA
Sbjct: 47  ERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPA 106

Query: 250 VPI 252
             I
Sbjct: 107 KVI 109

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 31/127 (24%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVT---IGQSTNIGFNVALSNCII--- 108
           ID T  +   A V     +GA V I  G V+   V    IG  TNI         +I   
Sbjct: 14  IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNI-----QDGVVIHAD 68

Query: 109 -GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
            G    I + V IG          HG ++         IG++V IG  + +  G+    V
Sbjct: 69  PGYPVTIGDDVTIG----------HGAVVH-----GCTIGDNVLIGMGATVLDGA----V 109

Query: 168 IGDHSKI 174
           IGD S +
Sbjct: 110 IGDGSIV 116

Length = 176

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 64  GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123
           G + HS  VL   V +G G+VV  +V I     IG NV +   IIG++ +I +GV IG  
Sbjct: 304 GTVEHS--VLFQGVQVGEGSVVKDSV-IMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360

Query: 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 159
                V                IG +  IG  + I 
Sbjct: 361 KEVITV----------------IGENEVIGVGTVIG 380

Length = 380

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 27/103 (26%)

Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           IG G  + P   I               +IGD+  I  G  IG            N    
Sbjct: 3   IGEGVKIHPKAVIR-----------GPVVIGDNVNIGPGAVIGAAT-------GPNEKNP 44

Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG 181
                  IG++VEIGAN+ I  G      IGD++ I     + 
Sbjct: 45  TI-----IGDNVEIGANAVIHGG----VKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 96  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 155
           +  FNVA     +G          I     G  + E   +  +P +       ++ IG  
Sbjct: 22  DGAFNVAGKPVKLG------RYAEILGRLVGIKIGEVAVI--RPPVRIDLGEKNLTIGDL 73

Query: 156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLC-------GQVGIAGSATIGDYV 208
             I        ++G+   I + V +G NV I  +           G +  AG  TIG+ V
Sbjct: 74  CFIGVN--VVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDV 131

Query: 209 TLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 254
            +G    +   V+I     + A S V KD+   G   G PA  I +
Sbjct: 132 WIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRK 177

Length = 190

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 43/155 (27%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVALSNC 106
             I   V+I  GA++ S   +   V IG    +GP         IG + +IG  V + N 
Sbjct: 243 VTIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNS 302

Query: 107 II------------GDSCIIHNGVCIGQDGFGF--------FVDEHGNMLKKPQL----- 141
           II            GDS I  N  C     FG           D+   +  K +      
Sbjct: 303 IIMEGTKIPHLSYVGDSVIGEN--C----NFGAGTKVANLRHDDKPVKVTVKGKRVDTGR 356

Query: 142 --LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
             L A +G+ V+ G N  I+ G      IG  ++I
Sbjct: 357 RKLGAIVGDGVKTGINVSINPG----VKIGSGARI 387

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 26/100 (26%)

Query: 91  IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 150
           IG+ST IG N  + N +IGD+  I +GV I                      N+ + ++V
Sbjct: 2   IGESTVIGENAIIKNSVIGDNVRIGDGVTIT---------------------NSILMDNV 40

Query: 151 EIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 190
            IGANS I      D++IGD++ I   V++ +   IG   
Sbjct: 41  TIGANSVI-----VDSIIGDNAVIGENVRVVNLCIIGDDV 75

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 200
           L    I    +IG    ID G+    VIG+ + I + V I H V +G      G    +G
Sbjct: 65  LFGIEIHPGAKIGRGLFIDHGT--GVVIGETAVIGDDVTIYHGVTLG------GTGKESG 116

Query: 201 SA--TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
               TIG+ V +G    +  ++ I    ++ A S V KD+       G PA  I
Sbjct: 117 KRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVI 170

Length = 194

>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 33/140 (23%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTI-GQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           I  GA+V  ++ +  +V IG GTVV P  TI  ++  I         IIG++ II   V 
Sbjct: 2   IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPI---------IIGENNIIEEQVT 52

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV-IGD------HS 172
           I                KKP   +      + IG+N+  + G   + + IG+       S
Sbjct: 53  IVN--------------KKP--KDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKS 96

Query: 173 KIDNLVQIGHNVAIGKSCML 192
            +   V I     IG  C L
Sbjct: 97  FVGKNVIITDGCIIGAGCKL 116

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 164

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 75/199 (37%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVV-GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           +E    +    V+G    I SGT + GP   IG+           NC IG +  I     
Sbjct: 239 VEENVTIKGPVVIGEGAVIRSGTYIEGPVY-IGK-----------NCDIGPNAYIRPYTV 286

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQ 179
           IG                     N  IGN VEI           ++++I + +KI +L  
Sbjct: 287 IGN--------------------NVHIGNAVEI-----------KNSIIMEGTKIPHLSY 315

Query: 180 IGHNVAIGKSCML-CG-------------QVGIAGS----------ATIGDYVTLGGRVA 215
           +G +V IG++C    G             +V + G           A +GD V  G    
Sbjct: 316 VGDSV-IGENCNFGAGTKVANLRHDDKPVKVTVKGKRVDTGRRKLGAIVGDGVKTG---- 370

Query: 216 VRDHVSIASKVRLAANSCV 234
              +VSI   V++ + + +
Sbjct: 371 --INVSINPGVKIGSGARI 387

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 33/126 (26%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNIGFNVALSNCII-- 108
           ID +  I   A V     LG    +  G V    V P + IG+ TNI         ++  
Sbjct: 2   IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNP-IRIGERTNIQ-----DGSVLHV 55

Query: 109 --GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
             G   II + V +G          HG +L         IG++  IG  + I  G+    
Sbjct: 56  DPGYPTIIGDNVTVG----------HGAVLH-----GCTIGDNCLIGMGAIILDGA---- 96

Query: 167 VIGDHS 172
           VIG  S
Sbjct: 97  VIGKGS 102

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG--------QSTNIGFNVAL-SNCIIG 109
           V I  G  +H KAV+   V IG    +GP   IG          T IG NV + +N +I 
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60

Query: 110 DSCIIHNGVCIG 121
               I +   IG
Sbjct: 61  GGVKIGDNAVIG 72

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-C 106
           I  +   I          +      +G  V IG   VV  A  IG   +IG N  +   C
Sbjct: 50  ILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV-NAAQIGSYVHIGKNCVIGRRC 108

Query: 107 IIGDSCII 114
           II D   I
Sbjct: 109 IIKDCVKI 116

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 142 LNARIG------NHVEIGANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGKSCMLC 193
           +NARI       + V IG N+ I  G+  +    IG+ + ID    +G    +GK+  + 
Sbjct: 85  INARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIG 144

Query: 194 GQVGIAG-----SA---TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG 245
               +AG     SA    I D V +G    + + V +     +AA + V +D+       
Sbjct: 145 AGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVA 204

Query: 246 GFPAVPIHEWRRQVANQIRSSKK 268
           G PA  I    +QV  + +   +
Sbjct: 205 GVPAKVI----KQVDEKTKDKTE 223

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRD 218
            IG+  KI     I   V IG +  +     I             IGD V +G    +  
Sbjct: 2   FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61

Query: 219 HVSIASKVRLAANSCV 234
            V I     + A + V
Sbjct: 62  GVKIGDNAVIGAGAVV 77

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 36/128 (28%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV----GPAVTIGQSTNIGFNVAL-- 103
             SA +  T      A+V    ++G NV +G G  +    G  + IG + NI   V +  
Sbjct: 6   DPSAYVHPT------AVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA 59

Query: 104 ---------SNCIIGDSCIIHNGVCIGQD---GFGFFVDEHGNMLKKPQLLNARIGNHVE 151
                     N  I    I+H    IG +   GF   V             NA++G++  
Sbjct: 60  LEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVV------------FNAKVGDNCV 107

Query: 152 IGANSCID 159
           IG N+ +D
Sbjct: 108 IGHNAVVD 115

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           I  + +I   AI+   +V+G NV IG G  +  ++ +  +  IG N  + + IIGD+ +I
Sbjct: 2   IGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSI-LMDNVTIGANSVIVDSIIGDNAVI 59

Query: 115 HNGV 118
              V
Sbjct: 60  GENV 63

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 26/103 (25%)

Query: 72  VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131
           ++G +  IG   ++  +V IG +  IG  V ++N I+ D+  I                 
Sbjct: 1   LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANS------------- 46

Query: 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                    ++++ IG++  IG N  +        +IGD   +
Sbjct: 47  --------VIVDSIIGDNAVIGENVRVVNLC----IIGDDVVV 77

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 35.4 bits (83), Expect = 0.001
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 200
            TVIG++  I   V IG  V IG + ++   V I G
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 73  LGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF-GFFVD 130
           +G N  IG+   +   V IG +  I  NV++     I D   I   V    D +    + 
Sbjct: 1   IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60

Query: 131 EHGNMLKKPQLLNARIGNHVEIGANSCI 158
               +          +     IGAN+ I
Sbjct: 61  RKWELKG------TTVKRGASIGANATI 82

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 163 WRDTVIGDHSKIDNL--VQIGHNVAIGKSCMLCGQV--------GIAGSATIGDYVTLGG 212
                IG    ID+   + IG    IG +C +   V        G     TIGD V +G 
Sbjct: 6   HPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGA 65

Query: 213 RVAVRDHVSIASKVRLAANSCVFKDI 238
              +  +++I   V++ AN+ V KD+
Sbjct: 66  GAKILGNITIGDNVKIGANAVVTKDV 91

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 76  NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 135
           N+ IG    +GP   I     I          IGD+ +I   V I    +    D     
Sbjct: 1   NISIGDNVYIGPGCVISAGGGI---------TIGDNVLIGPNVTI----YDHNHDIDDPE 47

Query: 136 LKKPQLLNA---RIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
               Q + +    IG+ V IGAN  I  G      IGD + +
Sbjct: 48  RPIEQGVTSAPIVIGDDVWIGANVVILPG----VTIGDGAVV 85

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 33/163 (20%), Positives = 47/163 (28%), Gaps = 52/163 (31%)

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI------ 158
           N ++    II + V I            G+      L    IG +  +     I      
Sbjct: 21  NIVLNGKTIIQSDVII-----------RGD------LATVSIGRYCILSEGCVIRPPFKK 63

Query: 159 --DRGSWRDTVIGDHSKID-----NLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 211
                ++    IGD+  I      N  QIG  V IGK+C             IG    + 
Sbjct: 64  FSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNC------------VIGRRCIIK 111

Query: 212 GRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 254
             V + D   +     +   S             G PA  I E
Sbjct: 112 DCVKILDGTVVPPDTVIPPYS----------VVSGRPARFIGE 144

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           ++  + VH  AVL  +V IG    +GP  ++    + G  V      + D+C+IH     
Sbjct: 3   VDPSSFVHPTAVLIGDVIIGKNCYIGPHASL--RGDFGRIVIRDGANVQDNCVIH----- 55

Query: 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS 172
           G  G    ++E+G++     L    IG +  +G N+ +  G+    VIG+ S
Sbjct: 56  GFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGA----VIGEES 103

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 50/192 (26%), Positives = 67/192 (34%), Gaps = 49/192 (25%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI---------------GQSTNIGF 99
           ID  V I    ++H    L     IG   VVGP  T+               G  + IG 
Sbjct: 268 IDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIG- 326

Query: 100 NVALSNCIIGDSCIIHNGVCIGQDG-FGFFVD----EHGNMLKKPQLL---NARIGNHVE 151
               +   +G    +  G  +G++G  G FV+      G   K P L    +A IG H  
Sbjct: 327 ----AGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSN 382

Query: 152 IGANSCI---DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV 208
           IGA+S     D  +   T IG H            V  G   M    V      T+GD  
Sbjct: 383 IGASSVFVNYDGVNKHRTTIGSH------------VRTGSDTMFVAPV------TVGDGA 424

Query: 209 TLGGRVAVRDHV 220
             G    +R+ V
Sbjct: 425 YTGAGTVIREDV 436

Length = 482

>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 152 IGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 211
           IG    +D G+    VIG+ + I + V I H V +G +    G         IGD   LG
Sbjct: 214 IGKGILLDHGT--GVVIGETAVIGDRVSILHGVTLGGTGKETGD----RHPKIGDGALLG 267

Query: 212 GRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 249
             V +  ++SI +   +AA S V KD+       G PA
Sbjct: 268 ACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPA 305

Length = 355

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 36.6 bits (86), Expect = 0.004
 Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 33/128 (25%)

Query: 146 IGNHVEIGANSCIDRGSWRDTVI-GDHSKI---------DNLV---------QIGHNVAI 186
           IG+ V +G  S +    W   V+ GD + I         D  V          IG NV +
Sbjct: 15  IGD-VTLGEGSSV----WFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTV 69

Query: 187 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT-EPGD-Y 244
           G   +L G        TIGD   +G    + D   I     +AA S V       PG   
Sbjct: 70  GHGAVLHG-------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLV 122

Query: 245 GGFPAVPI 252
            G PA  +
Sbjct: 123 AGSPAKVV 130

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|227138 COG4801, COG4801, Predicted acyltransferase [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 143 NARIGNHVEIGANSCIDRGSWRDTVI-GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 201
              +   V IG NS +  G   + +I G+  +I   + +  ++ I   C + G V +   
Sbjct: 16  IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDI-VAKDIRIDMWCKVTGNVIVEND 74

Query: 202 ATIGDYVTLGGRVAVRDHVSIASKVRL 228
           A IG++ ++ G++ V   + I + V +
Sbjct: 75  AYIGEFSSIKGKLTVIGDLDIGADVII 101

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	100.0
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	100.0
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	100.0
COG1043	260	LpxA Acyl-[acyl carrier protein]	100.0
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	100.0
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	100.0
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.97
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.97
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.96
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.96
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.96
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.95
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.95
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.95
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.95
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.94
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.94
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.94
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.93
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.92
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.91
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.9
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.9
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.9
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.88
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.85
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.84
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.83
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.83
PRK13627	196	carnitine operon protein CaiE; Provisional	99.82
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.81
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.81
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.81
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.81
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.8
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.8
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.79
PLN02296	269	carbonate dehydratase	99.79
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.78
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.78
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.78
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.77
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.77
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.77
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.77
PLN02472	246	uncharacterized protein	99.76
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.76
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.76
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.75
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.75
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.73
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.73
PRK10502	182	putative acyl transferase; Provisional	99.73
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.73
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.7
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.7
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.69
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.68
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.68
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.68
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.67
PRK10092	183	maltose O-acetyltransferase; Provisional	99.67
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.67
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.67
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.66
PRK13627	196	carnitine operon protein CaiE; Provisional	99.65
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.65
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.64
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.63
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.62
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.62
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.62
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.62
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.61
PRK11132	273	cysE serine acetyltransferase; Provisional	99.6
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.58
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.58
PLN02694	294	serine O-acetyltransferase	99.58
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.58
PLN02739	355	serine acetyltransferase	99.57
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.57
PLN02296	269	carbonate dehydratase	99.56
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.55
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.55
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.55
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.55
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.55
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.54
PLN02472	246	uncharacterized protein	99.54
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.54
PRK10191	146	putative acyl transferase; Provisional	99.54
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.53
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.53
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.51
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.5
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.5
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.49
PLN02357	360	serine acetyltransferase	99.49
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.49
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.48
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.46
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.46
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.46
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.45
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.45
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.43
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.41
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.41
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.4
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.37
PRK10502	182	putative acyl transferase; Provisional	99.37
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.36
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.36
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.35
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.34
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.34
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.33
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.32
PRK10092	183	maltose O-acetyltransferase; Provisional	99.32
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.32
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.3
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.3
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.3
PRK11132	273	cysE serine acetyltransferase; Provisional	99.29
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.28
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.27
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.26
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.25
PLN02739	355	serine acetyltransferase	99.24
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.22
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.22
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.22
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.2
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.2
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.18
PLN02694	294	serine O-acetyltransferase	99.18
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.15
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.13
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.13
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.12
PRK10191	146	putative acyl transferase; Provisional	99.1
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.1
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.08
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.07
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.07
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.06
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.04
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.02
PLN02357	360	serine acetyltransferase	98.99
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.98
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.98
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.98
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.98
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.94
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.9
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.87
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.81
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.79
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.78
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.78
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.78
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.73
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.63
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.6
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.58
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.56
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.51
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.27
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.23
COG4801	277	Predicted acyltransferase [General function predic	98.17
COG4801	277	Predicted acyltransferase [General function predic	98.03
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.95
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.85
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.79
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	88.67
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	88.09
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	83.07

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=100.00  E-value=1.4e-37  Score=271.71  Aligned_cols=249  Identities=41%  Similarity=0.662  Sum_probs=214.3

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~   93 (271)
                      +.+...|.....+|......      ...+++++.+++++.|++++.|+++++|+++++||+++.|+++++|+++++||+
T Consensus        71 ~~p~~~~~~~~~~~~~~~~~------~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~  144 (324)
T TIGR01853        71 KDPYLAFAKVAELFDPPPKR------EAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD  144 (324)
T ss_pred             CCHHHHHHHHHHHhcccccc------cCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCC
Confidence            45555565555555322211      233566677777777888888888888888888888888888888888888888


Q ss_pred             CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191           94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (271)
Q Consensus        94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~  172 (271)
                      +|.|++++.| .+++||++|.|+++++|+.+.|.+.....+.....++.+.++||+++.|++++++..+++.++.||+++
T Consensus       145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~  224 (324)
T TIGR01853       145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGT  224 (324)
T ss_pred             CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCc
Confidence            8888888888 489999999999999999998888765545556666677899999999999999999888999999999


Q ss_pred             EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      ++++.+++++++.||++|.+.+++.+.++++||++|++|+++.|.++++||++++|++++.|++|+|+++++.|+||+.+
T Consensus       225 ~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~  304 (324)
T TIGR01853       225 KIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPGVYGGIPARPN  304 (324)
T ss_pred             EEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEeCCcCCCCcEEEccCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhccccc
Q 024191          253 HEWRRQVANQIRSSKK  268 (271)
Q Consensus       253 ~~~~~~~~~~~r~~~~  268 (271)
                      ++|.|.+..+.||.+.
T Consensus       305 ~~~~~~~~~~~~l~~~  320 (324)
T TIGR01853       305 KEWLRIAAKVKRLPEL  320 (324)
T ss_pred             HHHHHHHHHHhccHhH
Confidence            9999999999988643

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=100.00  E-value=2e-37  Score=262.99  Aligned_cols=247  Identities=44%  Similarity=0.711  Sum_probs=217.6

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~   93 (271)
                      +.+.+.|....++|.....      ...-+.+.+.|++++.+++++.|+++++|++++.||+++.|+++|+|++++.||+
T Consensus        79 ~~P~~~fA~~~~~f~~~~~------~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~  152 (338)
T COG1044          79 KDPYLAFAKVAQLFYRPFN------PAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGD  152 (338)
T ss_pred             CCchHHHHHHHHHhccCCc------cccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECC
Confidence            4466777777777763322      1233455677888888888888888888888888888899999999988899999


Q ss_pred             CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191           94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (271)
Q Consensus        94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~  172 (271)
                      ++.|..++.| .++.||++|.|+++++|+.+.|.+.--..+ +...++.+..+||++++||.|+.|..+.+.++.|++++
T Consensus       153 ~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g-~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~  231 (338)
T COG1044         153 GTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGV  231 (338)
T ss_pred             CcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCC-ceEcceeceEEECCceEEcccceeccccccCceecCCc
Confidence            9999999998 669999999999999999999998865555 77778889999999999999999999999999999999


Q ss_pred             EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      +|++.++|+|+|.||++|.|..++.|.+.+.||++|.||+.+-|..+..|+|++.|.+.+-|.+++|++..+.|.|+.++
T Consensus       232 kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~  311 (338)
T COG1044         232 KIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPI  311 (338)
T ss_pred             EEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccccCCCceeccCCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997788999999


Q ss_pred             hHHHHHHHHhhcccc
Q 024191          253 HEWRRQVANQIRSSK  267 (271)
Q Consensus       253 ~~~~~~~~~~~r~~~  267 (271)
                      ++|.|....+.++..
T Consensus       312 k~w~k~~a~~~~l~~  326 (338)
T COG1044         312 KEWLKTAALIRRLPE  326 (338)
T ss_pred             HHHHHHHHHHhhCHH
Confidence            999987777666544

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=100.00  E-value=2e-35  Score=261.38  Aligned_cols=225  Identities=44%  Similarity=0.677  Sum_probs=196.7

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCE
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC  119 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~  119 (271)
                      ..+.+++.+++++++++++.|+++++|++++.||+++.|+++|+|++++.||++|.|+.++.| .++.|+++|.|++++.
T Consensus       101 ~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~  180 (343)
T PRK00892        101 AGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAV  180 (343)
T ss_pred             CcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCE
Confidence            344556667777777777777777777777777777777777777777788888888888888 5677999999999999


Q ss_pred             ECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec
Q 024191          120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA  199 (271)
Q Consensus       120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~  199 (271)
                      |+.+.|++. ...+.....++.+.++||+++.|+++++|..+...++.||+++++++.++|++++.||+++.+++++.+.
T Consensus       181 Ig~~~f~~~-~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~  259 (343)
T PRK00892        181 IGSDGFGFA-NDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIA  259 (343)
T ss_pred             EeccCcCcc-cCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeec
Confidence            999888887 4455566666677999999999999999998888899999999999999999999999999999999999


Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCC-CCeEEcCCCchhhHHHHHHHHhhccc
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE-PGDYGGFPAVPIHEWRRQVANQIRSS  266 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~-~~~~~g~p~~~i~~~~~~~~~~~r~~  266 (271)
                      ++++||++|+|+.++.|.++++||++++|++++.|.+|+|+ +..+.|+||+++++|.|.+..+.||-
T Consensus       260 ~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~~~~~~~~~~l~  327 (343)
T PRK00892        260 GSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAARLRRLD  327 (343)
T ss_pred             CCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCCCCeEEEeecCchHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999 77889999999999999998888775

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=100.00  E-value=4.6e-33  Score=224.20  Aligned_cols=185  Identities=29%  Similarity=0.418  Sum_probs=159.0

Q ss_pred             cEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceec
Q 024191           59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (271)
Q Consensus        59 ~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  137 (271)
                      ++|.+.++|++++.|++++.||+.|+|++++.|+++++|+.++.| ..++||+++.|.+.+.|+..+        +...+
T Consensus         4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~p--------QdlKy   75 (260)
T COG1043           4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDP--------QDLKY   75 (260)
T ss_pred             cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCC--------ccccc
Confidence            344455555556666666777777777777777777777777777 678899999999999998654        44555


Q ss_pred             CCceeceEECCCcEECCccEEeCCCcC---CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEcccc
Q 024191          138 KPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV  214 (271)
Q Consensus       138 ~~~~~~~~Ig~~~~I~~~~~i~~~~~~---~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~  214 (271)
                      ..+....+||+++.|.+++++..++..   .+.||++..++.++++.|||.||++|.+.+++++.+++.|||++.||+-+
T Consensus        76 kge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s  155 (260)
T COG1043          76 KGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS  155 (260)
T ss_pred             CCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence            666779999999999999999998864   48999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191          215 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       215 ~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      -|.+.++||++++|++.|.|.+|+||+.++.|+|+..
T Consensus       156 aVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l  192 (260)
T COG1043         156 AVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARL  192 (260)
T ss_pred             eEEEEEEEcchheeccccccccCCCCeEEecCCcccc
Confidence            9999999999999999999999999999988888765

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=100.00  E-value=1.7e-31  Score=225.88  Aligned_cols=184  Identities=29%  Similarity=0.417  Sum_probs=141.7

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      |+|++.|+++++|++++.|+++++|++++.||++|.|++++.|..           ++.||+++.|++++.|+..+.++.
T Consensus         2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~-----------~~~IG~~~~I~~~a~Ig~~pq~~~   70 (255)
T PRK12461          2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILG-----------PTRIGKNNKIHQGAVVGDEPQDFT   70 (255)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeC-----------CCEECCCCEEccCcEeCCCCcccc
Confidence            455555555555555555555555555555555544444444433           455666666777777764432221


Q ss_pred             EccCCceecCCceeceEECCCcEECCccEEeCCCc--CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECC
Q 024191          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGD  206 (271)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~--~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~  206 (271)
                              +..+...+.||+++.|+++++|..++.  ..+.||+++.++.++++++++.||++|++++++.+.++++|||
T Consensus        71 --------~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd  142 (255)
T PRK12461         71 --------YKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGD  142 (255)
T ss_pred             --------ccCccceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECC
Confidence                    112223789999999999999987653  4689999999999999999999999999999999999999999


Q ss_pred             CcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191          207 YVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       207 ~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      +++|++++.|.++++||++++|++++.|.+|+||++++.|+||+.
T Consensus       143 ~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~  187 (255)
T PRK12461        143 RAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCMMAGHPTNV  187 (255)
T ss_pred             CeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeEEecCcceE
Confidence            999999999999999999999999999999999999999999984

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=100.00  E-value=1.8e-30  Score=214.28  Aligned_cols=200  Identities=50%  Similarity=0.793  Sum_probs=158.8

Q ss_pred             ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCC
Q 024191           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHG  133 (271)
Q Consensus        55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~  133 (271)
                      +++++.|++.+.|++++.|++++.|+++++|.+++.|++++.|+.++.| .+++|++++.|++++.|+...|++.... +
T Consensus         4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~-~   82 (205)
T cd03352           4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG-G   82 (205)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecC-C
Confidence            3444444444444444555555555555555555555566666666655 3477888888888888887666554433 3


Q ss_pred             ceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccc
Q 024191          134 NMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR  213 (271)
Q Consensus       134 ~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~  213 (271)
                      .....+..+.+.|++++.+++++.+......++.|++++.+++++.+++++.++++++++.++.+.+++.||++|+|+++
T Consensus        83 ~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~  162 (205)
T cd03352          83 GWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQ  162 (205)
T ss_pred             cEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCC
Confidence            33344455689999999999999998765678999999999999999999999999999999999999999999999999


Q ss_pred             cEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          214 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       214 ~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      ++|.++++|+++++|++++.|.+|+|++.+|.|+||+.+++|
T Consensus       163 ~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~~  204 (205)
T cd03352         163 VGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREW  204 (205)
T ss_pred             CEEeCCcEECCCCEEcCCCEEeeECCCCCEEEeecCchhhhc
Confidence            999999999999999999999999999999999999998776

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.97  E-value=3.3e-30  Score=219.72  Aligned_cols=186  Identities=28%  Similarity=0.393  Sum_probs=142.4

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      .|+++|.|++.++|++++.|+++++|++++.||++|.|.+++.|..           +++||++|.|++++.|+..+.+.
T Consensus         4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g-----------~~~IG~~~~I~~~a~Ig~~~q~~   72 (262)
T PRK05289          4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDG-----------HTTIGKNNRIFPFASIGEDPQDL   72 (262)
T ss_pred             ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcC-----------ccEECCCCEEcccceecCCceee
Confidence            3555555555555555555555555555555555555444444443           45566666666677765433221


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEE
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI  204 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~I  204 (271)
                      -        +......+.||+++.|+++++|..++.   ..+.||+++.++.++++++++.||+++.+++++.+.++++|
T Consensus        73 ~--------~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~I  144 (262)
T PRK05289         73 K--------YKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEV  144 (262)
T ss_pred             c--------ccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcccccccccc
Confidence            1        011123799999999999999987642   35899999999999999999999999999999999999999


Q ss_pred             CCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       205 g~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      ||+|+||+++.|.++++||++++|+++|+|.+|+||++++.|+|++.+
T Consensus       145 gd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~  192 (262)
T PRK05289        145 GDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLR  192 (262)
T ss_pred             CCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEEecccCeEe
Confidence            999999999999999999999999999999999999999999999864

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.97  E-value=1.9e-28  Score=208.43  Aligned_cols=184  Identities=28%  Similarity=0.382  Sum_probs=127.4

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      |++++.|++++.|+++++|++++.|++++.||++|.|.+++.|+.+           +.||++|.|++++.|+....+..
T Consensus         2 I~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~-----------v~IG~~~~I~~~a~I~~~~~~~~   70 (254)
T cd03351           2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGP-----------TTIGKNNRIFPFASIGEAPQDLK   70 (254)
T ss_pred             cCCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCC-----------eEECCCCEEecceeecCccccee
Confidence            4444555555555555444444444444444444444444444333           33444444555555543221110


Q ss_pred             EccCCceecCCceeceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEEC
Q 024191          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG  205 (271)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig  205 (271)
                      .        ......+.||+++.|+++++|..+..   ..+.||+++.++.++++++++.||++|++++++.+.++++||
T Consensus        71 ~--------~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Ig  142 (254)
T cd03351          71 Y--------KGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIG  142 (254)
T ss_pred             e--------cCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeC
Confidence            0        00012677888888888887765433   258999999999999999999999999999999999999999


Q ss_pred             CCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191          206 DYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       206 ~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      ++|+|++++.|.++++|+++++|++++.|.+++|+++++.|.|++.
T Consensus       143 d~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~  188 (254)
T cd03351         143 DYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARL  188 (254)
T ss_pred             CCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEEEccCCeE
Confidence            9999999999999999999999999999999999999988888864

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.96  E-value=3.4e-28  Score=206.91  Aligned_cols=109  Identities=29%  Similarity=0.419  Sum_probs=101.6

Q ss_pred             ceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCC
Q 024191          143 NARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH  219 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~  219 (271)
                      .+.||+++.|+++++|..+..   .++.||+++.+..++++.+++.||++++++.++.+.++++|||+|+|++++.|.++
T Consensus        76 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~  155 (254)
T TIGR01852        76 ELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF  155 (254)
T ss_pred             eEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC
Confidence            788888888888888876543   36899999999999999999999999999999999999999999999999999999


Q ss_pred             CEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191          220 VSIASKVRLAANSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       220 ~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      ++|+++++|++++.|.+++|+++++.|+|++.
T Consensus       156 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~  187 (254)
T TIGR01852       156 VRIGRYAMIGGLSAVSKDVPPYGLVEGNRARL  187 (254)
T ss_pred             cEECCCCEEeeeeeEeeecCCCcEEecCcCee
Confidence            99999999999999999999999999999987

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.96  E-value=5.6e-29  Score=228.57  Aligned_cols=224  Identities=22%  Similarity=0.248  Sum_probs=180.7

Q ss_pred             eeEEeeccccH--HHHHHHHhhhccCCCCCchhhhhhccc--------CCCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191            6 FVHYYRLTKTY--KQDFGRFCNLFSTKSDIESRQQFQKWH--------NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGA   75 (271)
Q Consensus         6 ~~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~   75 (271)
                      .++.|++ +++  |.++.+++++...+..+..... ..+.        .....+++++.|++++.|++++.|+++++||+
T Consensus       207 ~v~~~~~-~~~~~~~~i~t~~dl~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~  284 (451)
T TIGR01173       207 TVRAVQV-DDSDEVLGVNDRLQLAQLERILQRRIA-KKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGD  284 (451)
T ss_pred             eEEEEEc-CChhheecCCCHHHHHHHHHHHHHHHH-HHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECC
Confidence            4777777 777  5556666666554332222111 1111        12234677788888888888888888888999


Q ss_pred             CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191           76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN  155 (271)
Q Consensus        76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~  155 (271)
                      ++.|+++|.|. ++.|+++|.|++++.|.++.|+++|.|++++.|..                    .++|++++.|+.+
T Consensus       285 ~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~Ig~~  343 (451)
T TIGR01173       285 DVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRP--------------------GSVLGAGVHIGNF  343 (451)
T ss_pred             CCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECC--------------------CCEECCCcEEccc
Confidence            99999999887 67899999999999999999999999999999974                    7899999999999


Q ss_pred             cEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEE
Q 024191          156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRL  228 (271)
Q Consensus       156 ~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i  228 (271)
                      +.+.     ++.||+++.+++.+.+ .++.||+++.|+.++.+..       +++|||+++||.++.|.++++||++++|
T Consensus       344 ~~i~-----~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  417 (451)
T TIGR01173       344 VETK-----NARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI  417 (451)
T ss_pred             eeec-----CcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence            9884     6799999999888777 4688888888888877754       6999999999999999999999999999


Q ss_pred             cCCcEEeccCCCCCeEEcCCC-chhhHHHHH
Q 024191          229 AANSCVFKDITEPGDYGGFPA-VPIHEWRRQ  258 (271)
Q Consensus       229 ~~~s~v~~~~~~~~~~~g~p~-~~i~~~~~~  258 (271)
                      +++++|.+|+|+++++.|.|+ +.++.|.+.
T Consensus       418 ~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~  448 (451)
T TIGR01173       418 AAGSTVTKDVPEGALAISRARQRNIEGWVRP  448 (451)
T ss_pred             ccCCEECccCCCCcEEEccCceeeccccccc
Confidence            999999999999999987555 667777654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.96  E-value=6.4e-28  Score=221.96  Aligned_cols=224  Identities=18%  Similarity=0.243  Sum_probs=175.8

Q ss_pred             eeEEeeccccH--HHHHHHHhhhccCCCCCchhhhhh------cccCCC-cEEccCcEECCCcEECCCCEECcCcEECCC
Q 024191            6 FVHYYRLTKTY--KQDFGRFCNLFSTKSDIESRQQFQ------KWHNGG-GIFHQSACIDSTVLIEVGAIVHSKAVLGAN   76 (271)
Q Consensus         6 ~~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~   76 (271)
                      -++.|.+ .++  |.++++++++++++..+.......      ..+++. ..|++++.|++++.|+++|.|+++++||++
T Consensus       214 ~v~~~~~-~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~  292 (459)
T PRK14355        214 RCLAFPV-ADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEG  292 (459)
T ss_pred             eEEEEEc-CCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCC
Confidence            4778888 777  778899999999976444332111      123333 246666777777777777777777777777


Q ss_pred             cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191           77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus        77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                      +.|+++++|. ++.|+++|.|+.++.+.+++|++++.|++++.+..                    ++.|++++.|+.++
T Consensus       293 ~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~--------------------~~~i~~~~~ig~~~  351 (459)
T PRK14355        293 CTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRP--------------------GTELSAHVKIGNFV  351 (459)
T ss_pred             CEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECC--------------------CCEeCCCCEECCCc
Confidence            7777777776 57888888888888888999999999999999974                    78899999999988


Q ss_pred             EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee-------ccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      .+     +++.||+++.+.+.+.+ .++.|+++|.|+.++.+       ..++.||++|+||.++.|.++++||++++|+
T Consensus       352 ~~-----~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~  425 (459)
T PRK14355        352 ET-----KKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIA  425 (459)
T ss_pred             cc-----cCCEECCCceeeeeccc-cCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEEC
Confidence            66     46789999988777766 46777777777776654       2368999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCeEEc-CCCchhhHHHH
Q 024191          230 ANSCVFKDITEPGDYGG-FPAVPIHEWRR  257 (271)
Q Consensus       230 ~~s~v~~~~~~~~~~~g-~p~~~i~~~~~  257 (271)
                      ++|.|.+|+|+++++.| .|+...+.|++
T Consensus       426 a~s~v~~~v~~~~~~~~~~~~~~~~~~~~  454 (459)
T PRK14355        426 AGTTVTKDVPPDSLAIARSPQVNKEGWKL  454 (459)
T ss_pred             CCCEEcccCCCCcEEEeccceeccccccc
Confidence            99999999999999887 66666666643

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.95  E-value=2.9e-27  Score=217.51  Aligned_cols=214  Identities=19%  Similarity=0.310  Sum_probs=174.4

Q ss_pred             HHHHHHHhhhccCCC--CC-chhhhhhcccCCC-cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEEC
Q 024191           17 KQDFGRFCNLFSTKS--DI-ESRQQFQKWHNGG-GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG   92 (271)
Q Consensus        17 w~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig   92 (271)
                      |.++++++.++.++.  .+ ....   ....+. ..+...+.+++++.|+++|.|++++.||+++.|+++|.|. ++.|+
T Consensus       229 ~~di~~~~~y~~~~~~~~~l~~~~---~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig  304 (456)
T PRK09451        229 RLQLARLERVYQAEQAEKLLLAGV---MLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIG  304 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC---EEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEc
Confidence            788999998887652  11 1111   001111 1244566778888899999998889999999999999997 78899


Q ss_pred             CCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191           93 QSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (271)
Q Consensus        93 ~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~  172 (271)
                      ++|.|++++.|.+++|++++.|++++.|..                    .+.+++++.|++++.+.     ++.|++++
T Consensus       305 ~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~ig~~~~i~-----~~~i~~~~  359 (456)
T PRK09451        305 DDCEISPYSVVEDANLGAACTIGPFARLRP--------------------GAELAEGAHVGNFVEMK-----KARLGKGS  359 (456)
T ss_pred             CCCEEcCCEEEeCCccCCCcEecCceEEeC--------------------CCEECCCceeccceeee-----ceeeCCCC
Confidence            999999999999999999999999999974                    78899999999998884     57888888


Q ss_pred             EECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-  244 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~-  244 (271)
                      .+++.+.+ .++.||++|.|+.++.+..       +++|||+|+||.+++|.++++|+++++|+++++|.+|+|+++.+ 
T Consensus       360 ~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~  438 (456)
T PRK09451        360 KAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVI  438 (456)
T ss_pred             ccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEE
Confidence            88877666 4577777777777765532       48999999999999999999999999999999999999999987 


Q ss_pred             EcCCCchhhHHHHHHH
Q 024191          245 GGFPAVPIHEWRRQVA  260 (271)
Q Consensus       245 ~g~p~~~i~~~~~~~~  260 (271)
                      .|.|++.+++|.|..+
T Consensus       439 ~~~~~~~~~~~~~~~~  454 (456)
T PRK09451        439 SRVPQRHIQGWQRPVK  454 (456)
T ss_pred             eccCceeccccccccc
Confidence            5799999999987654

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.95  E-value=2.2e-26  Score=188.23  Aligned_cols=177  Identities=23%  Similarity=0.330  Sum_probs=156.3

Q ss_pred             CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCc
Q 024191           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF  125 (271)
Q Consensus        46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~  125 (271)
                      ...+.+.++|++++.|++++.|+++++|++++.|++++.|.+. .|++++.|++++.+.++.|++++.|++++.|..   
T Consensus         9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~---   84 (193)
T cd03353           9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP---   84 (193)
T ss_pred             eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcC---
Confidence            3457778888888888888888888999999999999999865 899999999999999999999999999999974   


Q ss_pred             eeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec------
Q 024191          126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA------  199 (271)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~------  199 (271)
                                       ++.|++++.|+.++.+.     ++.|++++.+.+...+ .++.|++++.|+.++.+.      
T Consensus        85 -----------------~~~Ig~~~~Ig~~~~i~-----~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~  141 (193)
T cd03353          85 -----------------GTVLGEGVHIGNFVEIK-----KSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVN  141 (193)
T ss_pred             -----------------ccEECCCCEECCcEEEe-----cceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCcc
Confidence                             78999999999998884     5788999999887777 578888888888877654      


Q ss_pred             -cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCC
Q 024191          200 -GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA  249 (271)
Q Consensus       200 -~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~  249 (271)
                       .+++|||+++++.++++.++++|+++++|+++++|.+|+|+++++.|.|.
T Consensus       142 ~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~~  192 (193)
T cd03353         142 KHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARAR  192 (193)
T ss_pred             ccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEeccC
Confidence             36899999999999999999999999999999999999999999998775

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.95  E-value=6.7e-27  Score=216.35  Aligned_cols=222  Identities=16%  Similarity=0.193  Sum_probs=165.6

Q ss_pred             eeEEeeccccHHHHHHHHhhh------ccCCCCCchhhhh-h-cccC-CCcEEccCcEECCCcEECCCCEECcCcEECCC
Q 024191            6 FVHYYRLTKTYKQDFGRFCNL------FSTKSDIESRQQF-Q-KWHN-GGGIFHQSACIDSTVLIEVGAIVHSKAVLGAN   76 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~------~~~~~~~~~~~~~-~-~~~~-~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~   76 (271)
                      -++.|++ +++|.+.+.++++      +..+..++..... . .... ..+.|++++.|++++.|++++.|.++++||++
T Consensus       217 ~V~~~~~-~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~  295 (482)
T PRK14352        217 RVGAHHA-DDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGED  295 (482)
T ss_pred             eEEEEec-CCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCC
Confidence            4788888 8999988766555      2233222221110 0 0111 13445566666666666666666666666666


Q ss_pred             cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191           77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus        77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                      |.|+++|+|. +++|+++|.|++ +.+.+++|++++.|++++.+..                    .++||+++.++.++
T Consensus       296 ~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~--------------------~~vIg~~~~ig~~~  353 (482)
T PRK14352        296 AVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGPFTYLRP--------------------GTVLGEEGKLGAFV  353 (482)
T ss_pred             CEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECCCeEecC--------------------CcEEcCCCEECCcE
Confidence            6666666665 456677777653 5668899999999999988864                    88999999999888


Q ss_pred             EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec-------cCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-------GSATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      .+     .++.|++++.+++...+ .++.||++|.|+.++.+.       .+++|||+++||.+++|.++++||++++|+
T Consensus       354 ~~-----~~~~I~~~~~i~~~~~i-~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~ig  427 (482)
T PRK14352        354 ET-----KNATIGRGTKVPHLTYV-GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTG  427 (482)
T ss_pred             EE-----cccEECCCcEEccCcee-cccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEEC
Confidence            76     35788888888887666 467788888888777665       359999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCeE-EcCCCchhhHHH
Q 024191          230 ANSCVFKDITEPGDY-GGFPAVPIHEWR  256 (271)
Q Consensus       230 ~~s~v~~~~~~~~~~-~g~p~~~i~~~~  256 (271)
                      ++++|.+|+|+++++ .|.|++.++.|.
T Consensus       428 ags~v~~~v~~~~~~~~~~p~~~~~~~~  455 (482)
T PRK14352        428 AGTVIREDVPPGALAVSEGPQRNIEGWV  455 (482)
T ss_pred             CCCEEcCCCCCCcEEEeccccccccccc
Confidence            999999999999975 599999999885

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.95  E-value=5.4e-26  Score=193.37  Aligned_cols=202  Identities=24%  Similarity=0.277  Sum_probs=175.6

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEECC
Q 024191           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGD  110 (271)
Q Consensus        44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig~  110 (271)
                      .+.+.|++++.|++++.|++++.|+++++||+++.|+++|+|.+++.||++|.|++++.|.             ++.||+
T Consensus         3 ~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   82 (254)
T cd03351           3 HPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD   82 (254)
T ss_pred             CCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence            4567899999999999999999999999999999999999999999999999999999994             689999


Q ss_pred             CcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCC
Q 024191          111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC  190 (271)
Q Consensus       111 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~  190 (271)
                      +|.|++++.|.....    .+         ...++||+++.|+++++|.    +++.||+++.+++++.+.+++.||++|
T Consensus        83 ~~~Ig~~~~I~~~~~----~~---------~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd~~  145 (254)
T cd03351          83 NNTIREFVTIHRGTA----QG---------GGVTRIGNNNLLMAYVHVA----HDCVIGNNVILANNATLAGHVEIGDYA  145 (254)
T ss_pred             CCEECCccEEecccc----CC---------CCceEECCCCEECCCCEEC----CCCEECCCcEECCCccccCCcEeCCCc
Confidence            999999999974210    00         0269999999999999997    679999999999999999999999999


Q ss_pred             EEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhc
Q 024191          191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIR  264 (271)
Q Consensus       191 ~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r  264 (271)
                      +|+.++.+.++++||+++.|+++++|.++  |++++++.+.+.....+....+ ..|.|+..+.++.++++.+.|
T Consensus       146 ~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~  218 (254)
T cd03351         146 IIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILYR  218 (254)
T ss_pred             EECCcceECCCcEECCCCEECcCCEEeee--cCCCeEEEccCCeEeccceeceeecCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999997  5889999887776666665554 358999888888888754433

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.94  E-value=1.3e-25  Score=189.92  Aligned_cols=204  Identities=22%  Similarity=0.281  Sum_probs=174.6

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEEC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG  109 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig  109 (271)
                      +++++.|++++.|++++.|+++|.|++++.||+++.|+++++|.+++.||+++.|++++.|.             .+.||
T Consensus         2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG   81 (255)
T PRK12461          2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG   81 (255)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence            45678899999999999999999999999999999999999999999999999999999984             47899


Q ss_pred             CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  189 (271)
Q Consensus       110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~  189 (271)
                      +++.|++++.|.....              ....+.||+++.+..++++.    +++.||+++.+.+++.+..++.||++
T Consensus        82 ~~~~I~e~vtI~~gt~--------------~g~~t~IG~~~~i~~~~~I~----hd~~IG~~v~i~~~~~i~g~v~Igd~  143 (255)
T PRK12461         82 DRNVIREGVTIHRGTK--------------GGGVTRIGNDNLLMAYSHVA----HDCQIGNNVILVNGALLAGHVTVGDR  143 (255)
T ss_pred             CceEECCccEEecCcc--------------cCCcEEEcccceeccCcEEC----CCCEECCCcEECCCCccCCceEECCC
Confidence            9999999999964210              01268899999999999887    68999999999999999999999999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhccc
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRSS  266 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r~~  266 (271)
                      ++++.++.+.++++||++++|+++++|.++  +++++++.+...-..-+..=.+ ..|++...++.++++++.++|..
T Consensus       144 a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~~  219 (255)
T PRK12461        144 AIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMAGHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRSG  219 (255)
T ss_pred             eEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEecCcceEeccchhhhhhcCCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999998  6888888765443333332222 46888899999999988887654

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=1.5e-26  Score=201.00  Aligned_cols=192  Identities=23%  Similarity=0.338  Sum_probs=152.8

Q ss_pred             hcccCCCcEEccC--cEECCCcEECCCCEECc------CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCC
Q 024191           40 QKWHNGGGIFHQS--ACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDS  111 (271)
Q Consensus        40 ~~~~~~~~~i~~~--~~i~~~~~I~~~~~I~~------~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~  111 (271)
                      .+|+..+..+..+  .+|+..+.|++++.|++      ++.||++|.||++|+|. ++.|++++.|..++.|+++.|+++
T Consensus       248 ~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~  326 (460)
T COG1207         248 EKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEG  326 (460)
T ss_pred             HHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCC
Confidence            3555555443332  24445555555555555      45555555555555555 466888888888888899999999


Q ss_pred             cEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCE
Q 024191          112 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM  191 (271)
Q Consensus       112 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~  191 (271)
                      +.||+.+.|.+                    .+.+++++.||..+.+     +++.||++++.++-+++ .++.||.++.
T Consensus       327 ~~VGPfA~LRP--------------------g~~L~~~~hIGNFVEv-----K~a~ig~gsKa~HLtYl-GDA~iG~~~N  380 (460)
T COG1207         327 ATVGPFARLRP--------------------GAVLGADVHIGNFVEV-----KKATIGKGSKAGHLTYL-GDAEIGENVN  380 (460)
T ss_pred             cccCCccccCC--------------------cCcccCCCeEeeeEEE-----ecccccCCccccceeee-ccceecCCce
Confidence            99999999986                    8999999999999988     68899999999998888 6778888888


Q ss_pred             Ecccceecc-------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-EcCCCchhhHHHHH
Q 024191          192 LCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQ  258 (271)
Q Consensus       192 i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~-~g~p~~~i~~~~~~  258 (271)
                      ||.++...+       .+.|||+++||+++.+...++||+++.|++||.+++|+|++++. +..+++.+..|.+.
T Consensus       381 iGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw~~~  455 (460)
T COG1207         381 IGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGWVRK  455 (460)
T ss_pred             eccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeeccccccc
Confidence            877776543       49999999999999999999999999999999999999999984 67888999999775

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=6.1e-26  Score=208.25  Aligned_cols=203  Identities=16%  Similarity=0.205  Sum_probs=116.0

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEcc-------CcEECCCcEECCCCEECcCcEECCCcE
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQ-------SACIDSTVLIEVGAIVHSKAVLGANVC   78 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~i~~~~~I~~~~~I~~~~~Ig~~v~   78 (271)
                      .++.+......|.++.+++++..++..+........+......+++       ++.|++++.|++++.|++++.|++++.
T Consensus       215 ~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~  294 (446)
T PRK14353        215 RVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAV  294 (446)
T ss_pred             eEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCE
Confidence            4667777345688999999998776544332211222221122333       333333333333333333333333333


Q ss_pred             ECCCCEECCCcEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccE
Q 024191           79 IGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC  157 (271)
Q Consensus        79 Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~  157 (271)
                      |++++.|. ++.||++|.|++++.|. ++.||++|.|++++.+.                     +++|++++.++    
T Consensus       295 I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~---------------------~~~i~~~~~i~----  348 (446)
T PRK14353        295 IHAFSHLE-GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVK---------------------NAKLGEGAKVN----  348 (446)
T ss_pred             ECCCeEEe-ccEECCCcEECCCeEEeccceecCCeEEcCceEEe---------------------ceEECCCCEEC----
Confidence            33333332 24444444444444442 44444444444444442                     44444444444    


Q ss_pred             EeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee-------ccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          158 IDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       158 i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                                        +++.+ .++.|+++|.|+.++.+       ..+++||++|+||++++|.++++||++++|++
T Consensus       349 ------------------~~~~i-~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~  409 (446)
T PRK14353        349 ------------------HLTYI-GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIAS  409 (446)
T ss_pred             ------------------CeeEE-cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECC
Confidence                              43333 23444444444444433       34699999999999999999999999999999


Q ss_pred             CcEEeccCCCCCeEEcCCCchhh
Q 024191          231 NSCVFKDITEPGDYGGFPAVPIH  253 (271)
Q Consensus       231 ~s~v~~~~~~~~~~~g~p~~~i~  253 (271)
                      ++.|.+|+|+++++.|.|....+
T Consensus       410 ~s~v~~~v~~~~~~~g~~~~~~~  432 (446)
T PRK14353        410 GSVITEDVPDDALALGRARQETK  432 (446)
T ss_pred             CCEECccCCCCCEEEecCceEec
Confidence            99999999999999999885533

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.94  E-value=2.7e-25  Score=189.47  Aligned_cols=205  Identities=24%  Similarity=0.309  Sum_probs=170.6

Q ss_pred             ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEE
Q 024191           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCII  108 (271)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~I  108 (271)
                      .+++++.|++++.|++++.|+++|.|+++++||+++.|+++++|.++++||++|.|++++.|.             .+.|
T Consensus         4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I   83 (262)
T PRK05289          4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI   83 (262)
T ss_pred             ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence            456788999999999999999999999999999999999999999999999999999999994             4889


Q ss_pred             CCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECC
Q 024191          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGK  188 (271)
Q Consensus       109 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~  188 (271)
                      |+++.|++++.|......             ....+.||+++.|+.++++.    +++.||+++.+.+++.+..++.|++
T Consensus        84 G~~~~I~e~~~I~~~~~~-------------~~~~t~IG~~~~I~~~~~I~----h~~~IG~~v~i~~~~~i~g~v~Igd  146 (262)
T PRK05289         84 GDNNTIREFVTINRGTVQ-------------GGGVTRIGDNNLLMAYVHVA----HDCVVGNHVILANNATLAGHVEVGD  146 (262)
T ss_pred             CCCCEECCCeEEeccccc-------------CCCeeEECCceEECCCCEEC----CeEEECCCeEECCccccccccccCC
Confidence            999999999999742100             01268999999999999997    6899999999999999999999999


Q ss_pred             CCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHHhhcc
Q 024191          189 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRS  265 (271)
Q Consensus       189 ~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~~~r~  265 (271)
                      +++++.++.+.++++||+++.|+++++|.++  +++++++.+...-...+..-. ...|.+...+..+.++++.+.+.
T Consensus       147 ~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~G~pa~~~~~n~~g~~~~~~~~~~~~~i~~a~~~~~~~  222 (262)
T PRK05289        147 YAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAEGNPARLRGLNLVGLKRRGFSREEIHALRRAYKLLYRS  222 (262)
T ss_pred             cEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEEecccCeEeccchhhhhhCCCCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999986  467777754433222222111 24567777777777777666553

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=1.8e-25  Score=205.18  Aligned_cols=179  Identities=20%  Similarity=0.282  Sum_probs=140.0

Q ss_pred             EccC-cEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-----cceEECCCcEECCCCEECC
Q 024191           49 FHQS-ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQ  122 (271)
Q Consensus        49 i~~~-~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-----~~~~Ig~~~~I~~~~~i~~  122 (271)
                      ++++ +.++++++|++++.|++++.|++++.||++|+|++++.|. ++.|+++|.|     .+++|++++.|++++.+..
T Consensus       245 ~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~  323 (448)
T PRK14357        245 LDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLRE  323 (448)
T ss_pred             eCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECC
Confidence            4443 3666666666666666666666666666666666666553 3555555554     6889999999999999863


Q ss_pred             CCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec---
Q 024191          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA---  199 (271)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---  199 (271)
                                          .++||+++.|++++.+.     ++.|++++.+.+.+.++ ++.||++|.|+.++.+.   
T Consensus       324 --------------------~~~ig~~~~Ig~~~~i~-----~~~ig~~~~~~~~~~~~-~~~Ig~~~~ig~~~~~~~~~  377 (448)
T PRK14357        324 --------------------GTVLKKSVKIGNFVEIK-----KSTIGENTKAQHLTYLG-DATVGKNVNIGAGTITCNYD  377 (448)
T ss_pred             --------------------cccccCCcEecCceeee-----ccEEcCCcCcccccccc-CcEECCCcEECCCccccccc
Confidence                                78999999999998874     47888888887776664 57777777777766543   


Q ss_pred             ----cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          200 ----GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       200 ----~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                          .+++|||+++||.+++|.++++||+++.|+++++|.+|+|+++++.|.|++.+..
T Consensus       378 ~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~  436 (448)
T PRK14357        378 GKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKE  436 (448)
T ss_pred             ccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEecc
Confidence                4699999999999999999999999999999999999999999999999987653

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=2.1e-25  Score=205.17  Aligned_cols=218  Identities=15%  Similarity=0.132  Sum_probs=175.1

Q ss_pred             eeEEeecccc--HHHHHHHHhhhccCCCCCchhhhhhcccC--------CCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191            6 FVHYYRLTKT--YKQDFGRFCNLFSTKSDIESRQQFQKWHN--------GGGIFHQSACIDSTVLIEVGAIVHSKAVLGA   75 (271)
Q Consensus         6 ~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~   75 (271)
                      .++.|.+ .+  .|.++.+++++..++..+..... ..++.        .+..+++++.+++++.|.+++.|++++.||+
T Consensus       215 ~v~~~~~-~~~~~~~~I~tp~dl~~a~~~l~~~~~-~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~  292 (456)
T PRK14356        215 NVLGVNC-GEDPNLLGVNTPAELVRSEELLRARIV-EKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIAR  292 (456)
T ss_pred             eEEEEEc-CCcCeEecCcCHHHHHHHHHHHHHHHH-HHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECC
Confidence            4667776 44  45788889888877654443322 22322        2345666677777777777777777788888


Q ss_pred             CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191           76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN  155 (271)
Q Consensus        76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~  155 (271)
                      ++.|+++|.|. +++|+++|.|++++.|.+++|++++.|++++.|..                    .+.||+++.|+.+
T Consensus       293 ~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~ig~~~~ig~~  351 (456)
T PRK14356        293 GAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP--------------------GAVLEEGARVGNF  351 (456)
T ss_pred             CCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECC--------------------CCEECCCCEecCC
Confidence            88888888886 67899999999999999999999999999999974                    7899999999999


Q ss_pred             cEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee-------ccCcEECCCcEEccccEECCCCEECCCcEE
Q 024191          156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVSIASKVRL  228 (271)
Q Consensus       156 ~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i  228 (271)
                      +.+.     ++.+++++.+.+.+.++ ++.||+++.|+.++.+       ..+++|||++++|.++.|.++++||++++|
T Consensus       352 ~~i~-----~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i  425 (456)
T PRK14356        352 VEMK-----KAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALV  425 (456)
T ss_pred             ceee-----eeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEE
Confidence            8884     57899999998888775 5888888888887654       235999999999999999999999999999


Q ss_pred             cCCcEEeccCCCCCeEEcCCCchh
Q 024191          229 AANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       229 ~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      +++++|.+|+|+++++.|-.....
T Consensus       426 ~~~~~v~~~~~~~~~~~~~~~~~~  449 (456)
T PRK14356        426 GAGSVITKDVPDGSLAIARGRQKN  449 (456)
T ss_pred             cCCCEEeccCCCCcEEEEecceee
Confidence            999999999999999877555443

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.93  E-value=1.5e-24  Score=184.57  Aligned_cols=204  Identities=26%  Similarity=0.308  Sum_probs=168.6

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEECC
Q 024191           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGD  110 (271)
Q Consensus        44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig~  110 (271)
                      .+++.|++++.|++++.|++++.|++++.|++++.|+++|.|.+++.||+++.|++++.|.             .+.||+
T Consensus         2 ~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   81 (254)
T TIGR01852         2 HPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD   81 (254)
T ss_pred             CCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence            4567788888888888999999998889999999999999999889999999999999995             588999


Q ss_pred             CcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCC
Q 024191          111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC  190 (271)
Q Consensus       111 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~  190 (271)
                      +|.|++++.|......             ....++||+++.|+.++++.    +++.||+++.+++++.+.+++.||+++
T Consensus        82 ~~~I~~~~~I~~~~~~-------------~~~~~~IG~~~~I~~~~~I~----~~~~Ig~~~~i~~~~~i~~~~~Igd~~  144 (254)
T TIGR01852        82 NNTIREFVTINRGTAS-------------GGGVTRIGNNNLLMAYSHIA----HDCVVGNHVILANNATLAGHVEVGDYA  144 (254)
T ss_pred             CCEECCCCEECCcccC-------------CCCcEEECCCCEECCCCEEc----cCCEECCCCEECCCCEECCCcEECCCc
Confidence            9999999999753200             00278999999999999997    679999999999999999999999999


Q ss_pred             EEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHHhhccc
Q 024191          191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRSS  266 (271)
Q Consensus       191 ~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~~~r~~  266 (271)
                      +|+.++.+.++++|+++++|+++++|.++  |++++++.+.+...+...... ...|.+...+.++.++++.+.+..
T Consensus       145 ~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  219 (254)
T TIGR01852       145 IIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFRSG  219 (254)
T ss_pred             EEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcEEecCcCeecccceeeeecCCCCHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999986  899999988765554332111 235666666666666665555544

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=4.3e-25  Score=203.29  Aligned_cols=187  Identities=21%  Similarity=0.340  Sum_probs=146.4

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      .|++++.|++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|+ ++.+.++.|+++|.|++++.|..     
T Consensus       261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~-----  333 (458)
T PRK14354        261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRP-----  333 (458)
T ss_pred             EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEE-EEEEeCCEECCCcEECCceEecC-----
Confidence            345555555555555555555555555555555555554 34566667666 34557889999999999999874     


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------  200 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------  200 (271)
                                     .+.||+++.|+.++.+.     ++.|++++.+.+.+.+ .++.|+++|.++.++.+..       
T Consensus       334 ---------------~~~Ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~~  392 (458)
T PRK14354        334 ---------------GSVIGEEVKIGNFVEIK-----KSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNKF  392 (458)
T ss_pred             ---------------CCEEeCCcEECCceEEe-----eeEECCCCEecceeee-cCcccCCceEEcCceeeccccccccc
Confidence                           78999999999999885     5789999999888877 6688888888888877654       


Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch-hhHHHHHHHHh
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP-IHEWRRQVANQ  262 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~-i~~~~~~~~~~  262 (271)
                      +++|||++++|.++.|.++++||++++|+++++|.+|+|+++++.|.|+.. +..|.+.....
T Consensus       393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (458)
T PRK14354        393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQVNKEGYVKKLPHK  455 (458)
T ss_pred             CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccceecccchhhhhhhh
Confidence            699999999999999999999999999999999999999999999988854 66777665543

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=8.7e-25  Score=201.87  Aligned_cols=224  Identities=17%  Similarity=0.208  Sum_probs=167.6

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCC-CCCchhhhhhccc-------CCCc-EEccCcEECCCcEECCCCEECcCcEECCC
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTK-SDIESRQQFQKWH-------NGGG-IFHQSACIDSTVLIEVGAIVHSKAVLGAN   76 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~-~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~   76 (271)
                      .+++|.+ .++|..++....+..++ .+++.......+.       .+.+ .+.+++.|++++.|+++|+|++++.|+++
T Consensus       216 ~i~~~~~-~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~  294 (481)
T PRK14358        216 QVRAFKL-SDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADG  294 (481)
T ss_pred             eEEEEec-CCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCC
Confidence            4777887 78888776544332222 1122111111111       1222 24667778888888888888888888899


Q ss_pred             cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191           77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus        77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                      +.|+++|+|. +++|+++|.|++++.|.+++||+++.|++++.+..                    .+.||+++.|+.++
T Consensus       295 ~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~--------------------~~~Ig~~~~Ig~~~  353 (481)
T PRK14358        295 VTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRP--------------------GTVLGEGVHIGNFV  353 (481)
T ss_pred             CEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcC--------------------CcEECCCCEECCCE
Confidence            9999999986 56799999999999999999999999999999963                    78999999999998


Q ss_pred             EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      .+.     ++.|++++.+++.+.+ .++.||++|.|+.++.+..       ++.||++++||+++++.++++||++++|+
T Consensus       354 ~i~-----~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~  427 (481)
T PRK14358        354 ETK-----NARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA  427 (481)
T ss_pred             EEC-----CceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence            874     5677777777766555 4566666666666665542       58999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCeEE-cCCCchhhHHHH
Q 024191          230 ANSCVFKDITEPGDYG-GFPAVPIHEWRR  257 (271)
Q Consensus       230 ~~s~v~~~~~~~~~~~-g~p~~~i~~~~~  257 (271)
                      +++.+.+|+|++..+. +...+.+..+.+
T Consensus       428 ~gs~v~~~v~~~~~~~~~~~~~~~~~~~~  456 (481)
T PRK14358        428 AGSAVHDDVPEGAMAVARGKQRNLEGWSR  456 (481)
T ss_pred             CCCEEecccCCCCEEEecccceeccchhh
Confidence            9999999999999875 335555555544

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=9.5e-25  Score=200.56  Aligned_cols=181  Identities=24%  Similarity=0.379  Sum_probs=136.5

Q ss_pred             EccCc-EECCCcEECCCCEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCccEEcceEECCCcEECCCCEECC
Q 024191           49 FHQSA-CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (271)
Q Consensus        49 i~~~~-~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~-----~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~  122 (271)
                      +++++ .+++++.|++++.|++++.|++++.||++|.|++++     .|+++|.|+ .+.+.+++|++++.|++++.|..
T Consensus       252 i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~  330 (450)
T PRK14360        252 IDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRP  330 (450)
T ss_pred             ecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECC
Confidence            44443 355555555555555555555555555555555444     455555553 34456889999999999999974


Q ss_pred             CCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc--
Q 024191          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--  200 (271)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~--  200 (271)
                                          +++||++|.|+.++.+.     ++.|++++.+.+++.+ .++.|+++|.||+++.+..  
T Consensus       331 --------------------~~~Ig~~~~Ig~~~~i~-----~~~i~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~  384 (450)
T PRK14360        331 --------------------EAQIGSNCRIGNFVEIK-----KSQLGEGSKVNHLSYI-GDATLGEQVNIGAGTITANYD  384 (450)
T ss_pred             --------------------CCEEeCceEECCCEEEe-----ccccCCCcEeccceec-CCceecCCcEECccceecccc
Confidence                                78999999999999885     5788888888887766 4677777777777766643  


Q ss_pred             -----CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh-hHHH
Q 024191          201 -----SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI-HEWR  256 (271)
Q Consensus       201 -----~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i-~~~~  256 (271)
                           +++||++|+||++++|.++++||++++|++++.|.+|+|+++.+.|.|++.+ +.|.
T Consensus       385 ~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~~~~  446 (450)
T PRK14360        385 GVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKENWK  446 (450)
T ss_pred             ccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeeccchh
Confidence                 7999999999999999999999999999999999999999999999777654 4454

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=8.6e-25  Score=199.74  Aligned_cols=218  Identities=21%  Similarity=0.228  Sum_probs=147.7

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV   85 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I   85 (271)
                      -++.|....++|.++.++++++.++..+..... ..+...+..+    ...+.+.+.+++.|.+++.|++++.|+++|.|
T Consensus       206 ~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~-~~~~~~g~~~----~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i  280 (430)
T PRK14359        206 TIKAVFVDEENFMGVNSKFELAKAEEIMQERIK-KNAMKQGVIM----RLPETIYIESGVEFEGECELEEGVRILGKSKI  280 (430)
T ss_pred             eEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHH-HHHHHcCCEE----ecCCeeEECCCcEEcCceEECCCCEECCCeEE
Confidence            356677734689999999999988754444332 2222222211    11233445555666666677777777777777


Q ss_pred             CCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCC
Q 024191           86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (271)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~  165 (271)
                      + ++.|+++|.|++ +.+.+++||+++.|++++.|.                     ++.||+++.|+... +     .+
T Consensus       281 ~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~---------------------~~~ig~~~~i~~~~-~-----~~  331 (430)
T PRK14359        281 E-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIK---------------------NTHIGNFVETKNAK-L-----NG  331 (430)
T ss_pred             E-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEe---------------------ccEEcCcEEEcccE-e-----cc
Confidence            6 677777777766 566778888888888888885                     77888888777633 2     12


Q ss_pred             eEECCCcEECCCcEEccccEECCCCEEcccceecc-CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE
Q 024191          166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  244 (271)
Q Consensus       166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~  244 (271)
                      +.||..+.++. +.|++++.||+++.+.++....+ ++.||++|+||.++.|.++++||++++|++++.|.+|+|+++++
T Consensus       332 ~~i~~~~~i~d-~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~  410 (430)
T PRK14359        332 VKAGHLSYLGD-CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLA  410 (430)
T ss_pred             ccccccccccC-CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEE
Confidence            44444444432 34444444444444433322222 48999999999999999999999999999999999999999987


Q ss_pred             Ec-CCCchhhHHHHH
Q 024191          245 GG-FPAVPIHEWRRQ  258 (271)
Q Consensus       245 ~g-~p~~~i~~~~~~  258 (271)
                      .| .|+..++.|...
T Consensus       411 ~~~~~~~~~~~~~~~  425 (430)
T PRK14359        411 ISRAPQKNIKNFYYK  425 (430)
T ss_pred             EeccCceehhhHHHH
Confidence            64 999999998543

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.92  E-value=7e-24  Score=180.53  Aligned_cols=179  Identities=25%  Similarity=0.339  Sum_probs=160.7

Q ss_pred             CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCC
Q 024191           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDG  124 (271)
Q Consensus        46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~  124 (271)
                      ...|++.+.+.+.+.+++++.|+++++|++++.||++++|.++++||+++.||+++.| .+++|..++.||.+|.|.+  
T Consensus        99 ~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~--  176 (338)
T COG1044          99 AAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHS--  176 (338)
T ss_pred             ccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECC--
Confidence            3579999999999999999999999999999999999999999999999999999999 8999999999999999985  


Q ss_pred             ceeEEccCCceecCCceeceEECCCcEECCccEEeCC---CcCCeEECCCcEECCCcEEccc----cEECCCCEEcccce
Q 024191          125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG---SWRDTVIGDHSKIDNLVQIGHN----VAIGKSCMLCGQVG  197 (271)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~---~~~~~~ig~~~~i~~~~~i~~~----~~ig~~~~i~~~~~  197 (271)
                                        .++||.+.+....+.+.-.   -...+.|++++.|+.+++|.+.    +.|++++.|++.+.
T Consensus       177 ------------------GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vq  238 (338)
T COG1044         177 ------------------GAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQ  238 (338)
T ss_pred             ------------------CCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeE
Confidence                              8899999888887655511   0156899999999999999987    99999999999999


Q ss_pred             eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccC--CCCCeE
Q 024191          198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI--TEPGDY  244 (271)
Q Consensus       198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~--~~~~~~  244 (271)
                      |.++|+||++|.|.+++-|...+.||++++|++.+-+...+  -+++..
T Consensus       239 IaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I  287 (338)
T COG1044         239 IGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTI  287 (338)
T ss_pred             EccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEE
Confidence            99999999999999999999999999999999999988654  466654

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.91  E-value=6.8e-24  Score=171.27  Aligned_cols=206  Identities=25%  Similarity=0.286  Sum_probs=158.4

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEEC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG  109 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig  109 (271)
                      +++++.|.|+|.|+++++||+.|.|++++.|++++.|+++++|...+.||.++.|-+++.|.             ...||
T Consensus         6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG   85 (260)
T COG1043           6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG   85 (260)
T ss_pred             cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence            34445555555555555555555555555555555555555555555555555555555551             46889


Q ss_pred             CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  189 (271)
Q Consensus       110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~  189 (271)
                      ++|.|.+++++..+.          ...   .+.+.||+++.+-+++++.    +||+||+++++.++++++.++.|||+
T Consensus        86 ~~n~IRE~vTi~~GT----------~~g---~g~T~IGdnnl~May~HVA----HDC~iGn~~ilaNnatLAGHV~igD~  148 (260)
T COG1043          86 DNNTIREFVTIHRGT----------VQG---GGVTRIGDNNLIMAYAHVA----HDCVIGNNCILANNATLAGHVEVGDY  148 (260)
T ss_pred             CCCeEeeEEEEeccc----------cCC---ceeEEECCCCEEEEeeeee----ccceecCcEEEecCCeEeccEEECCE
Confidence            999999999986432          111   1479999999999999998    89999999999999999999999999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhcccc
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRSSK  267 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r~~~  267 (271)
                      +.|++.+.+...++||+++.||+.+-|.+++  ++++++.++....+.+.--.+ .+|+++..+..++++++.++|...
T Consensus       149 aiiGG~saVHQFvrIG~~amiGg~S~v~~DV--pPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~  225 (260)
T COG1043         149 AIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV--PPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGL  225 (260)
T ss_pred             EEEcCcceEEEEEEEcchheeccccccccCC--CCeEEecCCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCC
Confidence            9999999999999999999999999999876  569999888777666665554 579999999999999999988653

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.90  E-value=9.4e-23  Score=180.60  Aligned_cols=167  Identities=33%  Similarity=0.432  Sum_probs=124.0

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-c---------------
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-S---------------  104 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~---------------  104 (271)
                      .++..+..|++++.|++++.|+++++|.++++|++++.||++|.|.+++.|.+++.|+++|.| .               
T Consensus       113 ~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~  192 (343)
T PRK00892        113 AKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDR  192 (343)
T ss_pred             CEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCC
Confidence            344445556666666666666666666666666666666666666665555444444444444 2               


Q ss_pred             ----------ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEE
Q 024191          105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (271)
Q Consensus       105 ----------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i  174 (271)
                                +++|++++.|++++.|....                ...++||+++.|+.+++|.    +++.||+++.+
T Consensus       193 ~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~----------------~~~t~Ig~~~~i~~~v~I~----~~~~IG~~~~i  252 (343)
T PRK00892        193 GGWVKIPQLGRVIIGDDVEIGANTTIDRGA----------------LDDTVIGEGVKIDNLVQIA----HNVVIGRHTAI  252 (343)
T ss_pred             CceeeccccccEEECCCcEECCCcEEecCc----------------cccceeCCCCEEeCCeEEc----cCCEECCCcEE
Confidence                      35566666666666664321                2379999999999999997    67999999999


Q ss_pred             CCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE
Q 024191          175 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  228 (271)
Q Consensus       175 ~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i  228 (271)
                      .+++.+..++.||++++|+.++.+.++++||++++|++++.|.+++..+ +++.
T Consensus       253 ~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~-~~~~  305 (343)
T PRK00892        253 AAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEP-GEYS  305 (343)
T ss_pred             eeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCCC-CeEE
Confidence            9999999999999999999999999999999999999999999986653 4443

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.90  E-value=4.4e-23  Score=172.10  Aligned_cols=179  Identities=21%  Similarity=0.265  Sum_probs=112.6

Q ss_pred             EeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCc-EECCCcEECCCCEECcCcEECCCcEECCCCEECC
Q 024191            9 YYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSA-CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP   87 (271)
Q Consensus         9 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~   87 (271)
                      .+.+ .+||.|+   ++||+++..++.......  .......+.. +++.++.|++++.|.++++||+++.|++++.|.+
T Consensus        42 ~~~~-~gyW~Di---~~yl~an~diL~~~~~~~--~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~  115 (231)
T TIGR03532        42 SGVL-FGEWEDI---EPFIEANKDKIKDYRIEN--DRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINI  115 (231)
T ss_pred             cEEE-EEeHHHH---HHHHHHhHhhhcceEEee--cccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCC
Confidence            4555 8899999   999999988876542100  0000011111 2344455555555555555555555555555555


Q ss_pred             CcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCe
Q 024191           88 AVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT  166 (271)
Q Consensus        88 ~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~  166 (271)
                      ++.||++|.|+.++.| .++.||++|.|++++.|.                                      ..     
T Consensus       116 ~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~--------------------------------------~~-----  152 (231)
T TIGR03532       116 GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLA--------------------------------------GV-----  152 (231)
T ss_pred             CeEECCCCEEccccccCCCcEECCCcEEcCCcEEc--------------------------------------cc-----
Confidence            5555555554444444 233344444443333332                                      00     


Q ss_pred             EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEc
Q 024191          167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG  246 (271)
Q Consensus       167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g  246 (271)
                                         ++...        ..+++||++|+||++++|.+++.|+++++|+++++|.+|+|+++++.|
T Consensus       153 -------------------~~~~~--------~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G  205 (231)
T TIGR03532       153 -------------------IEPPS--------AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAG  205 (231)
T ss_pred             -------------------ccccc--------CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEe
Confidence                               00000        245889999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHhh
Q 024191          247 FPAVPIHEWRRQVANQI  263 (271)
Q Consensus       247 ~p~~~i~~~~~~~~~~~  263 (271)
                      +||+.++.+++......
T Consensus       206 ~PA~~i~~~~~~~~~~~  222 (231)
T TIGR03532       206 VPAKVIKQVDEKTKDKT  222 (231)
T ss_pred             cCCEEeccCChhHhHHH
Confidence            99999998865444433

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.90  E-value=4.4e-22  Score=174.23  Aligned_cols=80  Identities=30%  Similarity=0.466  Sum_probs=53.1

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      +++||+++.|+..++|.    +++.||+++.+.+++.+..++.||++|++++++.+.+++.||++++|++++.|.+++  
T Consensus       217 ~t~Ig~~~~I~n~v~I~----~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v--  290 (324)
T TIGR01853       217 DTIIGEGTKIDNLVQIA----HNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSI--  290 (324)
T ss_pred             cceecCCcEEccCcEEC----CCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEeCCcC--
Confidence            56666666666666665    456677777777777776677777777777777777777777777777777776653  


Q ss_pred             CCCcEE
Q 024191          223 ASKVRL  228 (271)
Q Consensus       223 g~~~~i  228 (271)
                      ++++++
T Consensus       291 ~~~~~~  296 (324)
T TIGR01853       291 PPPGVY  296 (324)
T ss_pred             CCCcEE
Confidence            444444

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.88  E-value=1.9e-20  Score=154.56  Aligned_cols=166  Identities=31%  Similarity=0.429  Sum_probs=123.2

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cc-----------------
Q 024191           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SN-----------------  105 (271)
Q Consensus        44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~-----------------  105 (271)
                      .++..|++.++++++++|+++++|++++.|++++.||++|.|.+++.|++++.|++++.| .+                 
T Consensus         5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~   84 (205)
T cd03352           5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW   84 (205)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence            445566666777666777777777666666666666666666666666555555555555 22                 


Q ss_pred             --------eEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCC
Q 024191          106 --------CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL  177 (271)
Q Consensus       106 --------~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~  177 (271)
                              +.|++++.|++++.+...                ....+.||+++.++.++.+.    +++.+++++.+..+
T Consensus        85 ~~~~~~~~v~Ig~~~~Ig~~~~i~~~----------------~~~~~~Ig~~~~i~~~v~I~----~~~~ig~~~~i~~~  144 (205)
T cd03352          85 VKIPQLGGVIIGDDVEIGANTTIDRG----------------ALGDTVIGDGTKIDNLVQIA----HNVRIGENCLIAAQ  144 (205)
T ss_pred             EEcCCcceEEECCCEEECCCCEEecc----------------ccCCeEECCCCEECCceEEe----CCCEECCCCEECCC
Confidence                    344555555555554321                11368999999999999997    56999999999999


Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      +.+.+++.|+++++|+.++.+.++++||++++|++++++.++  ++++.++.+.
T Consensus       145 ~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~G~  196 (205)
T cd03352         145 VGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGT  196 (205)
T ss_pred             CEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeE--CCCCCEEEee
Confidence            999999999999999999999999999999999999999964  5566666543

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.85  E-value=1.5e-19  Score=147.77  Aligned_cols=161  Identities=19%  Similarity=0.294  Sum_probs=118.5

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCccEE-cceEECCCcEE
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVAL-SNCIIGDSCII  114 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~-----~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I  114 (271)
                      .++..+..|++.+.|.+++.|+++|.|++++.|... .|+++|.|.++     +.|++++.|++++.| .++.|++++.|
T Consensus        16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~I   94 (193)
T cd03353          16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHI   94 (193)
T ss_pred             eEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEE
Confidence            445556667777777777777777777776666543 55666666553     456666666666666 35666667777


Q ss_pred             CCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEEC
Q 024191          115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIG  187 (271)
Q Consensus       115 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig  187 (271)
                      ++++.+.                     +++|++++.++..+.+     .++.||+++.+++++.+.       ..+.||
T Consensus        95 g~~~~i~---------------------~s~ig~~~~i~~~~~i-----~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vig  148 (193)
T cd03353          95 GNFVEIK---------------------KSTIGEGSKANHLSYL-----GDAEIGEGVNIGAGTITCNYDGVNKHRTVIG  148 (193)
T ss_pred             CCcEEEe---------------------cceEcCCCEeccccee-----cccEECCCCEEcCceEEeccCCccccCCEEC
Confidence            6666664                     7888888888877766     357888888888877663       468999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      ++++++.++.+.++++||+++.|+++++|.++  +++++++..
T Consensus       149 d~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~--v~~~~~v~~  189 (193)
T cd03353         149 DNVFIGSNSQLVAPVTIGDGATIAAGSTITKD--VPPGALAIA  189 (193)
T ss_pred             CCeEEccCCEEeCCcEECCCcEECCCCEEccc--cCCCCEEEe
Confidence            99999999999999999999999999999985  466776654

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.84  E-value=1.6e-19  Score=143.61  Aligned_cols=154  Identities=22%  Similarity=0.335  Sum_probs=115.2

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (271)
Q Consensus        44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~  123 (271)
                      .+++.+.+.+++++++.|++++.|.++++|++++.|++++.|.+++.|+++|.|++++.|.+++|++++.|++++.+.  
T Consensus         9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~--   86 (163)
T cd05636           9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG--   86 (163)
T ss_pred             CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe--
Confidence            445667778888888888888888888889999999999999888889999999999999889999999999888886  


Q ss_pred             CceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcE
Q 024191          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT  203 (271)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~  203 (271)
                                         .++|++++.|++++.+......+..+    .+..   .++....+        .. ..++.
T Consensus        87 -------------------~siIg~~~~I~~~~~i~~~~~~~~~~----~~~~---~~~~~~~~--------~~-~~~~i  131 (163)
T cd05636          87 -------------------DSVLGENVNLGAGTITANLRFDDKPV----KVRL---KGERVDTG--------RR-KLGAI  131 (163)
T ss_pred             -------------------cCEECCCCEECCCcEEcccCcCCcce----EEEe---cCcceecC--------Cc-ccCcE
Confidence                               78888888888888775321111000    0000   00111111        10 12488


Q ss_pred             ECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191          204 IGDYVTLGGRVAVRDHVSIASKVRLAANSCV  234 (271)
Q Consensus       204 Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v  234 (271)
                      |+++++||.++.|.+++.|+++++|+++++|
T Consensus       132 Ig~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636         132 IGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             EcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence            9999999999999999999999999999887

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.83  E-value=2.3e-19  Score=164.73  Aligned_cols=152  Identities=19%  Similarity=0.316  Sum_probs=109.5

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECc-----CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEEC
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIH  115 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~-----~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~  115 (271)
                      .++.++..|++++.|++++.|+++|.|++     +++||+++.|++++.|.+++.||++|.|++++.+.++.|++++.++
T Consensus       269 ~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~  348 (446)
T PRK14353        269 TVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN  348 (446)
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence            34444555666666666666666666665     3566666777777777666777777777777777778888888888


Q ss_pred             CCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccc
Q 024191          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ  195 (271)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~  195 (271)
                      +.+.++                     ++.||+++.|+.++++...          .    + ...+++.||++++++.+
T Consensus       349 ~~~~i~---------------------~~~ig~~~~Ig~~~~~~~~----------~----~-~~~~~~~Ig~~~~ig~~  392 (446)
T PRK14353        349 HLTYIG---------------------DATIGAGANIGAGTITCNY----------D----G-FNKHRTEIGAGAFIGSN  392 (446)
T ss_pred             CeeEEc---------------------CcEEcCCcEECCceeeecc----------c----c-ccCCCcEECCCcEECCC
Confidence            777775                     7888888888888765321          0    0 12356889999999999


Q ss_pred             ceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          196 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       196 ~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      +.+.++++||++++||++++|.+++.  +++++.+
T Consensus       393 ~~i~~~~~Ig~~~~ig~~s~v~~~v~--~~~~~~g  425 (446)
T PRK14353        393 SALVAPVTIGDGAYIASGSVITEDVP--DDALALG  425 (446)
T ss_pred             CEEeCCCEECCCCEECCCCEECccCC--CCCEEEe
Confidence            99999999999999999999998655  4544433

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.83  E-value=5.9e-20  Score=143.50  Aligned_cols=62  Identities=26%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCCCchhhHHHHHH
Q 024191          197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRRQV  259 (271)
Q Consensus       197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p~~~i~~~~~~~  259 (271)
                      .+.+ |+||++|+||.+++|+.+.+||++|+|+++++|+.  .+|+++++.|.|++.++++....
T Consensus        86 ivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~  149 (176)
T COG0663          86 VVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEE  149 (176)
T ss_pred             EEEE-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhH
Confidence            3344 88999999999999999999999999999999884  78999999999999999775443

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.82  E-value=4.2e-19  Score=144.48  Aligned_cols=64  Identities=20%  Similarity=0.151  Sum_probs=55.3

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccC--CCCCeEEcCCCchhhHHHHHHHHhhc
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI--TEPGDYGGFPAVPIHEWRRQVANQIR  264 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~--~~~~~~~g~p~~~i~~~~~~~~~~~r  264 (271)
                      +++||++|+||.+++|.+++.||+++.|+++|+|.+++  |++++|.|+||+.++.+.+....+.+
T Consensus        88 g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~~~~  153 (196)
T PRK13627         88 GCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKR  153 (196)
T ss_pred             eEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHHHHH
Confidence            47899999999999999999999999999999999976  88999999999999987554444433

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.81  E-value=7.6e-19  Score=161.49  Aligned_cols=155  Identities=21%  Similarity=0.305  Sum_probs=87.2

Q ss_pred             CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECC-----CcEECCCCEECCccEE-cceEECCCcEECCCCE
Q 024191           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP-----AVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC  119 (271)
Q Consensus        46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~-----~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~  119 (271)
                      +..|++++.|.+++.|++++.|++++.|. ++.|+++|.|++     ++.|+++|.|++++.| .+++|+++|.|++++.
T Consensus       267 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~  345 (451)
T TIGR01173       267 DVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVE  345 (451)
T ss_pred             CCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEcccee
Confidence            33444444444444444444444443332 233333333332     2345555555555555 2455556666666555


Q ss_pred             ECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcc-------ccEECCCCEE
Q 024191          120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH-------NVAIGKSCML  192 (271)
Q Consensus       120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~-------~~~ig~~~~i  192 (271)
                      +.                     ++.||+++.++..+.+.     ++.||+++.++.++.+..       .+.||++++|
T Consensus       346 i~---------------------~~~ig~~~~i~~~~~i~-----~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i  399 (451)
T TIGR01173       346 TK---------------------NARIGKGSKAGHLSYLG-----DAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFI  399 (451)
T ss_pred             ec---------------------CcEECCCcEecceeeEe-----eeEEcCCcEECCCeEEeCcccccCCCCEECCCcEE
Confidence            54                     56666666666666553     466666666666665532       4677777777


Q ss_pred             cccceeccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          193 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       193 ~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      +.++.+.++++||++++|+++++|.++  |++++++.
T Consensus       400 g~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~  434 (451)
T TIGR01173       400 GSNTQLVAPVKVGDGATIAAGSTVTKD--VPEGALAI  434 (451)
T ss_pred             CCCCEEECCcEECCCCEEccCCEECcc--CCCCcEEE
Confidence            777777777777777777777777664  45555553

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.81  E-value=8.9e-19  Score=143.74  Aligned_cols=157  Identities=20%  Similarity=0.166  Sum_probs=97.2

Q ss_pred             CCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCce
Q 024191           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (271)
Q Consensus        56 ~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~  135 (271)
                      ++++.|++++.|. ++.||+++.|+++|+|. +++||+++.|+.++.+.++.||++|.|++++.+.....          
T Consensus         6 ~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h----------   73 (204)
T TIGR03308         6 SPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNH----------   73 (204)
T ss_pred             CCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCC----------
Confidence            4455555555553 35666666666666665 55666667776666666666666666666666642100          


Q ss_pred             ecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccE
Q 024191          136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA  215 (271)
Q Consensus       136 ~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~  215 (271)
                                .-++....+.+          ....        ......  ..+... .......++.||++++||.+++
T Consensus        74 ----------~~~~~s~~~~~----------~~~~--------~~~~~~--~~~~~~-~~~~~~~~~~Ig~~~~Ig~~~~  122 (204)
T TIGR03308        74 ----------PMERPTLHHFT----------YRAA--------MYFDDA--SDDADF-FAWRRAKRVTIGHDVWIGHGAV  122 (204)
T ss_pred             ----------CCCcccccccc----------cccc--------cccccc--cccccc-cccccCCCeEECCCCEECCCCE
Confidence                      00000000000          0000        000000  000000 0011346799999999999999


Q ss_pred             ECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          216 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       216 i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |.+++.||++++|+++++|.+|+|+++++.|+||+.++.+
T Consensus       123 I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~  162 (204)
T TIGR03308       123 ILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR  162 (204)
T ss_pred             ECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence            9999999999999999999999999999999999998753

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.81  E-value=1.5e-18  Score=134.40  Aligned_cols=65  Identities=11%  Similarity=0.161  Sum_probs=57.6

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCC-CeEEcCCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEP-GDYGGFPA  249 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~-~~~~g~p~  249 (271)
                      +++.|+++++++.++.+.++++||+++.|+++++|.++++|+++   +++++|.||+|++ ..++|+|.
T Consensus        74 ~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~~~~~g~~~  139 (139)
T cd03350          74 TPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGSVVVAGSLP  139 (139)
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCCEEecccCC
Confidence            56777777777777888888999999999999999999999998   9999999999999 57889984

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.81  E-value=8e-19  Score=138.41  Aligned_cols=62  Identities=24%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCCCchhhHHHHHHHHh
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRRQVANQ  262 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p~~~i~~~~~~~~~~  262 (271)
                      ++.||++|+|+.+++|.+++.|+++++|++++++.+  ++|+++.+.|+|++.++.+.+....+
T Consensus        78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~~~  141 (155)
T cd04745          78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAW  141 (155)
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHHHH
Confidence            367777777888888888888888888888888877  67999999999999999876554443

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.80  E-value=2.4e-18  Score=159.16  Aligned_cols=171  Identities=16%  Similarity=0.250  Sum_probs=123.8

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcE-----ECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAV-----LGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHN  116 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~-----Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~  116 (271)
                      +.++..|++++.|.+++.|+++|.|+++|+     |++++.|+++++|. ++.|++++.|+.++.+ .++.|++++.|++
T Consensus       273 Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~-~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~  351 (481)
T PRK14358        273 LGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLE-GAEVGAGSDVGPFARLRPGTVLGEGVHIGN  351 (481)
T ss_pred             ECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceec-CCeEeCceEECCccEEcCCcEECCCCEECC
Confidence            344455555555555555555555555544     45555555555553 3566777777777777 4688888888888


Q ss_pred             CCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCC
Q 024191          117 GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKS  189 (271)
Q Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~  189 (271)
                      ++.|.                     +++|++++.+++.+.+     .++.||+++.+++++.+.       +++.||++
T Consensus       352 ~~~i~---------------------~~~i~~~~~ig~~~~~-----~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~  405 (481)
T PRK14358        352 FVETK---------------------NARLDAGVKAGHLAYL-----GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAG  405 (481)
T ss_pred             CEEEC---------------------CceecCCcccCceEEE-----CCeEEcCCceEcCCEEEeCCCCccCCCCEECCC
Confidence            88875                     8888999988888777     468888888888888774       46899999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD  243 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~  243 (271)
                      ++++.++.+.++++||++++|+++++|.+++..+..+.+  . .+.+++.....
T Consensus       406 ~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~--~-~~~~~~~~~~~  456 (481)
T PRK14358        406 VFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVA--R-GKQRNLEGWSR  456 (481)
T ss_pred             eEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEe--c-ccceeccchhh
Confidence            999999999999999999999999999997655444443  3 26667765554

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.80  E-value=3.1e-18  Score=158.62  Aligned_cols=164  Identities=21%  Similarity=0.273  Sum_probs=112.9

Q ss_pred             CCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEEC----CCcEECCCCEECCccEE-cceEECCCcEECCCCE
Q 024191           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC  119 (271)
Q Consensus        45 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~----~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~  119 (271)
                      ++..|++++.|.+++.|+++|.|++++.|. ++.|+++|.|.    .++.|++++.|++++.+ .+++|++++.++.++.
T Consensus       276 ~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~  354 (482)
T PRK14352        276 RDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVE  354 (482)
T ss_pred             CCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEE
Confidence            334444444444445555555555555552 35555565553    24556666777777666 4667777777776666


Q ss_pred             ECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCCCEE
Q 024191          120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCML  192 (271)
Q Consensus       120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~~~i  192 (271)
                      +.                     +++|++++.++..+.+     .++.||+++.|+.++.+.       +++.||+++++
T Consensus       355 ~~---------------------~~~I~~~~~i~~~~~i-----~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~i  408 (482)
T PRK14352        355 TK---------------------NATIGRGTKVPHLTYV-----GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRT  408 (482)
T ss_pred             Ec---------------------ccEECCCcEEccCcee-----cccEECCCcEECCCcEEeccccccCCCCeECCCcEE
Confidence            54                     7788888888877666     357888888888887664       45999999999


Q ss_pred             cccceeccCcEECCCcEEccccEECCCCEECCCcE--EcCCcEEecc
Q 024191          193 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR--LAANSCVFKD  237 (271)
Q Consensus       193 ~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~--i~~~s~v~~~  237 (271)
                      +.++.+.++++||++++|+++++|.+++.  ++++  .+.++...++
T Consensus       409 G~~~~i~~~~~Ig~~~~igags~v~~~v~--~~~~~~~~~p~~~~~~  453 (482)
T PRK14352        409 GSDTMFVAPVTVGDGAYTGAGTVIREDVP--PGALAVSEGPQRNIEG  453 (482)
T ss_pred             CCCCEEeCCCEECCCcEECCCCEEcCCCC--CCcEEEeccccccccc
Confidence            99999999999999999999999999864  4543  3444444443

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.79  E-value=4.4e-18  Score=142.62  Aligned_cols=66  Identities=11%  Similarity=0.200  Sum_probs=52.9

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE-c-CCCc
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-FPAV  250 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~-g-~p~~  250 (271)
                      +++.|+++|+|+.++.+.++++||++++||++++|.++++|.+..   +++++.+++|+++.+. | .|++
T Consensus       172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~vp~~svv~~g~~p~~  239 (269)
T TIGR00965       172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGRVPAGSVVVSGNLPSK  239 (269)
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeeeecCCCcEEecCCeecC
Confidence            567777777777777778888889999999999999999998876   7788888899999875 4 6643

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PLN02296 carbonate dehydratase

Probab=99.79  E-value=2.7e-18  Score=145.78  Aligned_cols=55  Identities=22%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcCCCchhhHH
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~p~~~i~~~  255 (271)
                      +++||++|+||.+++|.+++.|+++++|+++++|.++  +|++++|.|+||+.++.+
T Consensus       136 g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~  192 (269)
T PLN02296        136 GCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKL  192 (269)
T ss_pred             CCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCC
Confidence            3677788888888888888888888888888888877  788888888888887755

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=1.4e-18  Score=151.61  Aligned_cols=158  Identities=19%  Similarity=0.302  Sum_probs=120.8

Q ss_pred             CCcEEccCcEECCCcEECCCCEECcC-----cEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCC
Q 024191           45 GGGIFHQSACIDSTVLIEVGAIVHSK-----AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGV  118 (271)
Q Consensus        45 ~~~~i~~~~~i~~~~~I~~~~~I~~~-----~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~  118 (271)
                      ....|++++.+..++.|+.+|+|+++     +.|++++.|-++++|+ ++.|+++|.||+++++ .++.|+++++||+.+
T Consensus       273 ~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFV  351 (460)
T COG1207         273 RDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLRPGAVLGADVHIGNFV  351 (460)
T ss_pred             CceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceee-ccEecCCcccCCccccCCcCcccCCCeEeeeE
Confidence            34445555555556666666666666     4455555555555554 5678888888888888 789999999999999


Q ss_pred             EECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-------ccccEECCCCE
Q 024191          119 CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIGKSCM  191 (271)
Q Consensus       119 ~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-------~~~~~ig~~~~  191 (271)
                      .+.                     ++.||++++.++-+.++     |+.||+++.|+.++..       .+.+.||+++.
T Consensus       352 EvK---------------------~a~ig~gsKa~HLtYlG-----DA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vF  405 (460)
T COG1207         352 EVK---------------------KATIGKGSKAGHLTYLG-----DAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVF  405 (460)
T ss_pred             EEe---------------------cccccCCccccceeeec-----cceecCCceeccceEEEcCCCcccceeeecCCcE
Confidence            987                     88888888888888884     6788888888877664       45799999999


Q ss_pred             EcccceeccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       192 i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      +|+++.+-.+++|||+++|+++++|.+++.-+.-++-.
T Consensus       406 iGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~R  443 (460)
T COG1207         406 IGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISR  443 (460)
T ss_pred             EccCCcEEeeEEecCCcEEcccceEcccCCCCceeEee
Confidence            99999999999999999999999999987765444433

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.78  E-value=6.4e-18  Score=155.61  Aligned_cols=160  Identities=21%  Similarity=0.300  Sum_probs=114.3

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCccEE-cceEECCCcEECC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVAL-SNCIIGDSCIIHN  116 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~-----~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~  116 (271)
                      ...+..|++++.|.+++.|++++.|++++.|. ++.|+++|.|+++     +.|++++.|++++.| .++.|++++.|++
T Consensus       268 ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~  346 (456)
T PRK09451        268 HGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGN  346 (456)
T ss_pred             ECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecc
Confidence            34455566666666666666666666655553 4555555555444     445566666666666 4677777777777


Q ss_pred             CCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCC
Q 024191          117 GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKS  189 (271)
Q Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~  189 (271)
                      ++.|.                     .+.|++++.++..+.+     .++.||+++.|++++.+.       ..+.||++
T Consensus       347 ~~~i~---------------------~~~i~~~~~~~~~~~~-----g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~  400 (456)
T PRK09451        347 FVEMK---------------------KARLGKGSKAGHLTYL-----GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDD  400 (456)
T ss_pred             ceeee---------------------ceeeCCCCccCccccc-----cccEECCCCEEcCCeEEecccCcccCCCEECCC
Confidence            77765                     7888888888877665     467888888888887663       25889999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      |+++.++.+.++++||++++|+++++|.+++  ++++.+-++
T Consensus       401 ~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v--~~~~~~~~~  440 (456)
T PRK09451        401 VFVGSDTQLVAPVTVGKGATIGAGTTVTRDV--AENELVISR  440 (456)
T ss_pred             cEECCCCEEeCCcEECCCCEECCCCEEcccc--CCCCEEEec
Confidence            9999999999999999999999999999864  566666433

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.78  E-value=1.1e-17  Score=132.95  Aligned_cols=84  Identities=12%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             eEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE
Q 024191          166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG  245 (271)
Q Consensus       166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~  245 (271)
                      +.||+++.+..++.+.+ +.||++|+|+.++.+.++++||++|+||++++|.+++.+++++++++++.+.++..      
T Consensus        67 v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~~------  139 (164)
T cd04646          67 MIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQT------  139 (164)
T ss_pred             eEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEecC------
Confidence            44455555555555533 88888888888888899999999999999999999999999999999988887544      


Q ss_pred             cCCCchhhHHH
Q 024191          246 GFPAVPIHEWR  256 (271)
Q Consensus       246 g~p~~~i~~~~  256 (271)
                      -.|+..+++|+
T Consensus       140 ~~~~~~~~~~~  150 (164)
T cd04646         140 DRPKPQTLQLD  150 (164)
T ss_pred             CCchhHHHHHH
Confidence            13455555543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.77  E-value=8.8e-18  Score=154.38  Aligned_cols=156  Identities=17%  Similarity=0.225  Sum_probs=105.6

Q ss_pred             cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCC----------------EECCccEE-cceEEC
Q 024191           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST----------------NIGFNVAL-SNCIIG  109 (271)
Q Consensus        47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~----------------~Ig~~~~I-~~~~Ig  109 (271)
                      ..|++++.|++++.|++++.|++++.||+++.|+++|.|. ++.|+++|                .|++++.| .++.|+
T Consensus       250 ~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig  328 (448)
T PRK14357        250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLK  328 (448)
T ss_pred             EEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccccc
Confidence            3566666666666666666666666666666666665554 23444444                44444444 335555


Q ss_pred             CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------c
Q 024191          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------H  182 (271)
Q Consensus       110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~  182 (271)
                      +++.|++++.+.                     .+.||+++.+.+.+.+     .++.||+++.++.++.+.       +
T Consensus       329 ~~~~Ig~~~~i~---------------------~~~ig~~~~~~~~~~~-----~~~~Ig~~~~ig~~~~~~~~~~~~~~  382 (448)
T PRK14357        329 KSVKIGNFVEIK---------------------KSTIGENTKAQHLTYL-----GDATVGKNVNIGAGTITCNYDGKKKN  382 (448)
T ss_pred             CCcEecCceeee---------------------ccEEcCCcCccccccc-----cCcEECCCcEECCCcccccccccccC
Confidence            555555555543                     5667777766666555     357888888888877653       5


Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      .+.||++++|+.++.+.++++||++++|+++++|.++  +++++++.+.
T Consensus       383 ~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g~  429 (448)
T PRK14357        383 PTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED--VPPYSLALGR  429 (448)
T ss_pred             CcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEcc
Confidence            6999999999999999999999999999999999986  4556665543

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.77  E-value=1.1e-17  Score=152.96  Aligned_cols=150  Identities=20%  Similarity=0.236  Sum_probs=104.3

Q ss_pred             cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCc
Q 024191           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF  125 (271)
Q Consensus        47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~  125 (271)
                      ..+.+++.|.+.+.|++++.|++++.|+ ++.|+++|.|++ +.+ .++.|++++.| .++.| +++.|++++.|+    
T Consensus       254 ~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i-~~~~ig~~~~i~~~~~i-~~~~ig~~~~i~----  325 (430)
T PRK14359        254 IYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-SII-ENSDVGPLAHIRPKSEI-KNTHIGNFVETK----  325 (430)
T ss_pred             eEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-cEE-eCCEECCCCEECCCcEE-eccEEcCcEEEc----
Confidence            3456666777777777777777777776 677777777765 233 34555555555 34445 355556666554    


Q ss_pred             eeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCCCEEccccee
Q 024191          126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGI  198 (271)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~~~i~~~~~i  198 (271)
                                       ++++ +++.|++.+.+     .++.||+++.++.++.+.       ..+.||++++++.++.+
T Consensus       326 -----------------~~~~-~~~~i~~~~~i-----~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i  382 (430)
T PRK14359        326 -----------------NAKL-NGVKAGHLSYL-----GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQL  382 (430)
T ss_pred             -----------------ccEe-ccccccccccc-----cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEE
Confidence                             4445 56666666666     356777777777776664       35899999999999999


Q ss_pred             ccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          199 AGSATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       199 ~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      .++++||++++|+++++|.+++  ++++.+.
T Consensus       383 ~~~~~ig~~~~i~~g~~v~~~v--~~~~~~~  411 (430)
T PRK14359        383 VAPVNIEDNVLIAAGSTVTKDV--PKGSLAI  411 (430)
T ss_pred             eCCcEECCCCEECCCCEEcccc--CCCcEEE
Confidence            9999999999999999999975  4455553

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.77  E-value=1.7e-17  Score=152.62  Aligned_cols=148  Identities=22%  Similarity=0.315  Sum_probs=105.6

Q ss_pred             EECCCcEECCCCEECcCcEECCCcEECCCCEECC----CcEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeE
Q 024191           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        54 ~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~----~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      .|.+++.|++++.|++++.|. ++.|+++|.|+.    ++.|++++.|++++.|. ++.|+++|.|++++.+.       
T Consensus       276 ~i~~~~~ig~~~~I~~~~~I~-~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------  347 (450)
T PRK14360        276 HLRGNTVIGSGCRIGPGSLIE-NSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK-------  347 (450)
T ss_pred             EEeCCcEECCCCEECCCcEEE-EEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe-------
Confidence            333333333333333333332 233444444421    35577788888888884 68888888888888885       


Q ss_pred             EccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCCCEEcccceeccC
Q 024191          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGIAGS  201 (271)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~~~i~~~~~i~~~  201 (271)
                                    .++|++++.|.+++.+     .++.||+++.|++++.+.       ..+.||++++++.++.+.++
T Consensus       348 --------------~~~i~~~~~i~~~~~~-----~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~  408 (450)
T PRK14360        348 --------------KSQLGEGSKVNHLSYI-----GDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP  408 (450)
T ss_pred             --------------ccccCCCcEeccceec-----CCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC
Confidence                          7888888888887765     357888888888877763       37999999999999999999


Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      ++||+++.|+++++|.++  +++++++.+
T Consensus       409 ~~ig~~~~v~~~~~v~~~--~~~~~~~~g  435 (450)
T PRK14360        409 ITLGEDVTVAAGSTITKD--VPDNSLAIA  435 (450)
T ss_pred             cEECCCCEECCCCEECcc--CCCCCEEEe
Confidence            999999999999999984  555655544

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.77  E-value=7.5e-18  Score=136.70  Aligned_cols=54  Identities=24%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCCCchhhHH
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p~~~i~~~  255 (271)
                      ++|+++|+||.++.+.+++.|++++.|++++.|.+  ++|+++++.|+|++.++.+
T Consensus        87 siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~  142 (192)
T TIGR02287        87 CIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIREL  142 (192)
T ss_pred             CEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccC
Confidence            45555555555555555566666666666666554  4577777788888877753

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PLN02472 uncharacterized protein

Probab=99.76  E-value=1.1e-17  Score=140.26  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHHHH
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWRR  257 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~~~  257 (271)
                      +++|+++|+||.+++|.+++.|+++++|+++++|.  +++|++++|.|+||+.+++|.+
T Consensus       143 ~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~  201 (246)
T PLN02472        143 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN  201 (246)
T ss_pred             CeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence            47788888888888888888888888888888888  6789999999999999887654

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.76  E-value=4.5e-17  Score=150.09  Aligned_cols=158  Identities=22%  Similarity=0.387  Sum_probs=128.7

Q ss_pred             cEECCCC-EECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceec
Q 024191           59 VLIEVGA-IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (271)
Q Consensus        59 ~~I~~~~-~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  137 (271)
                      ..+++.+ .|++++.|++++.|+++|.|++++.||++|.|+.++.|.+++||++|.|++++.+.                
T Consensus       256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~----------------  319 (459)
T PRK14355        256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLE----------------  319 (459)
T ss_pred             EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEe----------------
Confidence            3566654 57777888888888888888888889999999999999899999999999999996                


Q ss_pred             CCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEEC
Q 024191          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR  217 (271)
Q Consensus       138 ~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~  217 (271)
                           +++|++++.|++++++..    ++.|++++.+++++.+ +++.|++++.+...+.+ +.+.||++|.||.++++.
T Consensus       320 -----~~~i~~~~~ig~~~~i~~----~~~i~~~~~ig~~~~~-~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~  388 (459)
T PRK14355        320 -----DSVVGDDVAIGPMAHLRP----GTELSAHVKIGNFVET-KKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITC  388 (459)
T ss_pred             -----CCEECCCCEECCCCEECC----CCEeCCCCEECCCccc-cCCEECCCceeeeeccc-cCCEECCCCEEccceeec
Confidence                 899999999999999974    5889999999998876 57888888888766666 468999999999988763


Q ss_pred             -------CCCEECCCcEEcCCcEEecc--CCCCCe
Q 024191          218 -------DHVSIASKVRLAANSCVFKD--ITEPGD  243 (271)
Q Consensus       218 -------~~~~ig~~~~i~~~s~v~~~--~~~~~~  243 (271)
                             .++.||+++.|++++.+...  +.+++.
T Consensus       389 ~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  423 (459)
T PRK14355        389 NYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSL  423 (459)
T ss_pred             CcCCccccCcEecCCeEEcCCCEEeCCcEECCCCE
Confidence                   35778888888888877643  344554

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.76  E-value=1.3e-17  Score=136.14  Aligned_cols=113  Identities=27%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|..++.|....                  .+.||++|.|++++.|....                   +.
T Consensus        74 ~ni~IG~~v~In~~~~I~d~~------------------~I~IGd~v~Ig~~v~I~~~~-------------------h~  116 (203)
T PRK09527         74 SNIHIGRNFYANFNLTIVDDY------------------TVTIGDNVLIAPNVTLSVTG-------------------HP  116 (203)
T ss_pred             CCcEEcCCcEECCCcEEecCC------------------CEEECCCCEECCCCEEEeCC-------------------CC
Confidence            478888888888887775321                  57777777777777665320                   00


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~  256 (271)
                      ...   ..-..+.....+++||++|+||++++|.++++||++++|+++|+|.+|+|+++++.|+||+.++.+.
T Consensus       117 ~~~---~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~  186 (203)
T PRK09527        117 VHH---ELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN  186 (203)
T ss_pred             CCh---hhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence            000   0000122234679999999999999999999999999999999999999999999999999998874

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.75  E-value=1.1e-16  Score=127.71  Aligned_cols=77  Identities=18%  Similarity=0.249  Sum_probs=60.2

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD  243 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~  243 (271)
                      ++.||+++.+.+++.+..++.||++|+|+.++.+. ++.||++|+|++++.|. ++.|++++.+++++++.++.++..+
T Consensus        64 ~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~  140 (167)
T cd00710          64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADAL  140 (167)
T ss_pred             CEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCccccc
Confidence            45555666666666666677788888888777776 58999999999999994 6899999999999999888776554

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.75  E-value=9.6e-17  Score=147.89  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=69.6

Q ss_pred             cEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeE
Q 024191           89 VTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV  167 (271)
Q Consensus        89 ~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~  167 (271)
                      +.|+++|.|++++.|. ++.||+++.|++++.|.                     .++|++++.+++.+.+.     ++.
T Consensus       317 ~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~---------------------~~~i~~~~~i~~~~~~~-----~~~  370 (458)
T PRK14354        317 SKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIK---------------------KSTIGEGTKVSHLTYIG-----DAE  370 (458)
T ss_pred             CEECCCcEECCceEecCCCEEeCCcEECCceEEe---------------------eeEECCCCEecceeeec-----Ccc
Confidence            4455556666665553 56666666666666664                     56666666666666552     456


Q ss_pred             ECCCcEECCCcEEc-------cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          168 IGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       168 ig~~~~i~~~~~i~-------~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      ||+++.++.++.+.       .++.|+++++++.++.+.++++||++++|+++++|.+++  ++++++.
T Consensus       371 ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~--~~~~~~~  437 (458)
T PRK14354        371 VGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDV--PEDALAI  437 (458)
T ss_pred             cCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCC--CCCCEEE
Confidence            66666666655542       246677777777777777777777777777777776643  3444443

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=9.2e-17  Score=147.94  Aligned_cols=71  Identities=20%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-------ccccEECCCCEEcccceeccCcEECCCcEEccccE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA  215 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-------~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~  215 (271)
                      +++|++++.+++.+.+     .++.||+++.+++++..       ..++.||++++++.++.+.++++||++++|+++++
T Consensus       356 ~~~i~~~~~i~~~~~i-----g~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~  430 (456)
T PRK14356        356 KAVLGKGAKANHLTYL-----GDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSV  430 (456)
T ss_pred             eeEecCCcEecccccc-----cCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCE
Confidence            4444444444444433     23444444444444332       12345555555555555555555555555555555


Q ss_pred             ECC
Q 024191          216 VRD  218 (271)
Q Consensus       216 i~~  218 (271)
                      |.+
T Consensus       431 v~~  433 (456)
T PRK14356        431 ITK  433 (456)
T ss_pred             Eec
Confidence            554

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.73  E-value=5.9e-17  Score=121.96  Aligned_cols=54  Identities=22%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhh
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  253 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~  253 (271)
                      .+++|+++|+|+.++.+.+++.|++++.|++++.+.+++|+++++.|+||+.++
T Consensus        66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~~  119 (119)
T cd03358          66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARIIG  119 (119)
T ss_pred             CCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCcCCCCeEEecCcceecC
Confidence            458899999999999999999999999999999999999999999999998753

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.73  E-value=6.7e-17  Score=136.72  Aligned_cols=71  Identities=14%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE-c-----------CCCc
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-----------FPAV  250 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~-g-----------~p~~  250 (271)
                      ++.|+++|+|+.++.+..+++||++|.|+++++|.+++.|.+.   .+++++.+++|+++.+. |           .||.
T Consensus       176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~---~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~  252 (272)
T PRK11830        176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDR---ETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAV  252 (272)
T ss_pred             CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcC---CCCcEEeeecCCCcEEecCcccccCCCcCCcCcE
Confidence            4555555555555555666777777777777777777777776   36677777777777653 5           4676


Q ss_pred             hhhHHH
Q 024191          251 PIHEWR  256 (271)
Q Consensus       251 ~i~~~~  256 (271)
                      .++..+
T Consensus       253 i~~~~~  258 (272)
T PRK11830        253 IVKKVD  258 (272)
T ss_pred             EEEEcc
Confidence            666553

>PRK10502 putative acyl transferase; Provisional

Probab=99.73  E-value=5.3e-17  Score=131.18  Aligned_cols=108  Identities=31%  Similarity=0.329  Sum_probs=82.5

Q ss_pred             ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  184 (271)
Q Consensus       105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~  184 (271)
                      ++.||+++.|++++.|....                  .+.||++|.|+.++.|..+.                   ++.
T Consensus        71 ~~~IG~~~~Ig~~~~I~~~~------------------~v~IG~~~~I~~~~~I~~~~-------------------h~~  113 (182)
T PRK10502         71 KLTIGDYAWIGDDVWLYNLG------------------EITIGAHCVISQKSYLCTGS-------------------HDY  113 (182)
T ss_pred             eEEECCCeEECCCceecccC------------------ceEECCCcEECCCeEEECCC-------------------CCC
Confidence            68888888888888886311                  56677777777666554320                   000


Q ss_pred             EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      . .     .....+..+++|||+|+||++++|.++++||++++|+++++|.+|+|++++++|+||+.++++
T Consensus       114 ~-~-----~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r  178 (182)
T PRK10502        114 S-D-----PHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPR  178 (182)
T ss_pred             c-C-----CCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEeccc
Confidence            0 0     001124567999999999999999999999999999999999999999999999999988765

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.73  E-value=1.4e-16  Score=125.31  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=36.5

Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHHHH
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWRR  257 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~~~  257 (271)
                      +.||++++|+.++.+.+++.|++++.+++++.+.  ++++++.+|.|+|++.++.+.+
T Consensus        79 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~  136 (154)
T cd04650          79 AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTE  136 (154)
T ss_pred             cEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCH
Confidence            3455555555555555555666666666666655  3678888888889888877654

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.70  E-value=1.8e-16  Score=129.24  Aligned_cols=139  Identities=21%  Similarity=0.201  Sum_probs=107.3

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .+..+|+++.++.++.+...       +         .....||+++.|++++.+...  .++.||+++.+++++.+..+
T Consensus        42 ~~I~iG~~v~i~~~~ri~~~-------~---------~~~i~IG~~v~Ig~~v~I~~~--~~v~IG~~v~Ig~~v~I~~~  103 (192)
T PRK09677         42 GSINFGEGFTSGVGLRLDAF-------G---------RGKLFFGDNVQVNDYVHIACI--ESITIGRDTLIASKVFITDH  103 (192)
T ss_pred             CeEEECCceEECCCeEEEec-------C---------CCeEEECCCCEECCCcEEccC--ceEEECCCCEECCCeEEECC
Confidence            47789999999999998521       0         127899999999999998754  46788888888887777543


Q ss_pred             cE--E-CCCCEEcc------cceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          184 VA--I-GKSCMLCG------QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       184 ~~--i-g~~~~i~~------~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                      ..  + ....+...      .....+++.||++|+||.+++|.++++||++++|+++++|.+++|+++++.|.||+.++.
T Consensus       104 ~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~  183 (192)
T PRK09677        104 NHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKK  183 (192)
T ss_pred             CCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEec
Confidence            21  0 00011111      111235799999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 024191          255 WRRQVA  260 (271)
Q Consensus       255 ~~~~~~  260 (271)
                      +..+..
T Consensus       184 ~~~~~~  189 (192)
T PRK09677        184 YNHETK  189 (192)
T ss_pred             cCcccc
Confidence            876443

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.70  E-value=4.8e-16  Score=127.37  Aligned_cols=102  Identities=30%  Similarity=0.436  Sum_probs=85.3

Q ss_pred             eEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEEC
Q 024191          144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  223 (271)
Q Consensus       144 ~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig  223 (271)
                      +.||+++.|+++++|.    .++.||+++.+..++.+++++.|+++++++.++.+.++++|+++|+|+.++.+.+++.|+
T Consensus       100 ~~ig~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~  175 (201)
T TIGR03570       100 ASIGEGTVIMAGAVIN----PDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIG  175 (201)
T ss_pred             CEECCCCEECCCCEEC----CCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEEC
Confidence            3344444444444443    235667777777778888888999999999999999999999999999999999999999


Q ss_pred             CCcEEcCCcEEeccCCCCCeEEcCCC
Q 024191          224 SKVRLAANSCVFKDITEPGDYGGFPA  249 (271)
Q Consensus       224 ~~~~i~~~s~v~~~~~~~~~~~g~p~  249 (271)
                      ++++|++++++.+++|++++|.|+||
T Consensus       176 ~~~~i~~~~~v~~~~~~~~~~~g~pa  201 (201)
T TIGR03570       176 AGAIVGAGAVVTKDIPDGGVVVGVPA  201 (201)
T ss_pred             CCCEECCCCEECCcCCCCCEEEeccC
Confidence            99999999999999999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.69  E-value=3.9e-16  Score=124.06  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=104.6

Q ss_pred             ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191           91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  169 (271)
Q Consensus        91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig  169 (271)
                      |++++.|.+.+.| .++.||+++.|++++.|....                 +.+.||++|.|++++.|....     ..
T Consensus         2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~-----------------~~i~IG~~~~I~~~~~I~~~~-----~~   59 (164)
T cd04646           2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEA-----------------GPIIIGENNIIEEQVTIVNKK-----PK   59 (164)
T ss_pred             cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCC-----------------CCeEECCCCEECCCcEEecCC-----CC
Confidence            3455555555555 678888888888888885321                 267888888888888775321     00


Q ss_pred             CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcC
Q 024191          170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGF  247 (271)
Q Consensus       170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~  247 (271)
                      +.       ..+.++.||+++.+..++.+.+ ++|||+|+|+.++.|.+++.|+++++|+++++|.++  +|+++++.|+
T Consensus        60 ~~-------~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~  131 (164)
T cd04646          60 DP-------AEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGA  131 (164)
T ss_pred             CC-------CCCCCeEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence            00       1234466777777777776665 999999999999999999999999999999999998  8999999999


Q ss_pred             CCchhh-H-----HHHHHHHhhccc
Q 024191          248 PAVPIH-E-----WRRQVANQIRSS  266 (271)
Q Consensus       248 p~~~i~-~-----~~~~~~~~~r~~  266 (271)
                      |+...- +     ..+.+..|.||.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~  156 (164)
T cd04646         132 DCLRRTQTDRPKPQTLQLDFLRKIL  156 (164)
T ss_pred             ceEEEecCCCchhHHHHHHHHHHHc
Confidence            974422 2     234455555554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.68  E-value=1.9e-15  Score=120.60  Aligned_cols=74  Identities=16%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .+.||+++.|++++.+.    .++.||+++.++.++.+ .++.|+++++|+.++.+. ++.|++++.+++++++.++...
T Consensus        64 ~v~Ig~~~~I~~~~~i~----g~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~  137 (167)
T cd00710          64 SVWIGKNVSIAHGAIVH----GPAYIGDNCFIGFRSVV-FNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQA  137 (167)
T ss_pred             CEEECCCceECCCCEEe----CCEEECCCCEECCCCEE-ECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcc
Confidence            56666667776666665    34777777777777777 467788888877777664 4667777777666666554443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.68  E-value=2.1e-15  Score=118.63  Aligned_cols=72  Identities=24%  Similarity=0.319  Sum_probs=35.9

Q ss_pred             EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEc
Q 024191          167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG  246 (271)
Q Consensus       167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g  246 (271)
                      .|++++.++.++.+ +++.|+++++|+.++.+.++++|+++|+|+.+++|.+++.+                |+++++.|
T Consensus        62 ~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i----------------~~~~~~~g  124 (153)
T cd04645          62 IIGDNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVI----------------PPGSLVAG  124 (153)
T ss_pred             EEcCCcEECCCcEE-eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEe----------------CCCCEEeC
Confidence            33333333333333 22445555555444444455555555555555555554444                55555556


Q ss_pred             CCCchhhHH
Q 024191          247 FPAVPIHEW  255 (271)
Q Consensus       247 ~p~~~i~~~  255 (271)
                      .|++.++++
T Consensus       125 ~~~~~~~~~  133 (153)
T cd04645         125 SPAKVVREL  133 (153)
T ss_pred             CcchhcccC
Confidence            666555544

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.68  E-value=1.3e-15  Score=123.94  Aligned_cols=99  Identities=29%  Similarity=0.421  Sum_probs=82.9

Q ss_pred             ECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCC
Q 024191          146 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK  225 (271)
Q Consensus       146 Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~  225 (271)
                      +++++.|++++.+.    .++.||+++.+..++.+++++.|+++++++.++.+.++++||++|+|+.++.|.+++.|+++
T Consensus        99 ig~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~  174 (197)
T cd03360          99 IGEGCVIMAGAVIN----PDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG  174 (197)
T ss_pred             ECCCCEEcCCCEEC----CCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCC
Confidence            34444444444443    24566777777777888888889999999999999999999999999999999999999999


Q ss_pred             cEEcCCcEEeccCCCCCeEEcCC
Q 024191          226 VRLAANSCVFKDITEPGDYGGFP  248 (271)
Q Consensus       226 ~~i~~~s~v~~~~~~~~~~~g~p  248 (271)
                      +.++++++|.+++|+++++.|+|
T Consensus       175 ~~v~~~~~v~~~~~~~~~~~g~p  197 (197)
T cd03360         175 AIIGAGAVVTKDVPDGSVVVGNP  197 (197)
T ss_pred             CEECCCCEEcCCCCCCCEEEecC
Confidence            99999999999999999999998

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.67  E-value=1.5e-15  Score=118.81  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=55.1

Q ss_pred             EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCC
Q 024191          167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  240 (271)
Q Consensus       167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~  240 (271)
                      .||+++.+++++.+ |.|+|+++|.||-++.++++++||++|.||++++|.++.+++++..+ |..+.+.+.+.+
T Consensus        74 ~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~  147 (176)
T COG0663          74 TIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDD  147 (176)
T ss_pred             EECCCcEEcCccEE-EEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCCh
Confidence            33333333333444 66888888888888888999999999999999999999999999876 555566666653

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.67  E-value=5.5e-16  Score=124.94  Aligned_cols=111  Identities=23%  Similarity=0.292  Sum_probs=80.7

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .+..||+++.|+.++.|....                  ...||++|.|++++++....                     
T Consensus        72 ~~i~iG~~~~in~~~~i~d~~------------------~I~IGd~v~I~~~v~i~t~~---------------------  112 (183)
T PRK10092         72 YNIFLGNNFYANFDCVMLDVC------------------PIRIGDNCMLAPGVHIYTAT---------------------  112 (183)
T ss_pred             CCcEEcCCcEECCceEEecCc------------------eEEECCCCEECCCCEEEcCC---------------------
Confidence            367777777777777665321                  45677777776666664320                     


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                       ...+......+..+.+++.||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+||+.++.
T Consensus       113 -h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~  182 (183)
T PRK10092        113 -HPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  182 (183)
T ss_pred             -CCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence             0001111112233457899999999999999999999999999999999999999999999999998764

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.67  E-value=2.1e-15  Score=119.64  Aligned_cols=66  Identities=24%  Similarity=0.299  Sum_probs=40.2

Q ss_pred             EECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcCCCchhhHHHHHHHHhhccccc
Q 024191          203 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEWRRQVANQIRSSKK  268 (271)
Q Consensus       203 ~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~p~~~i~~~~~~~~~~~r~~~~  268 (271)
                      .|++++.|+.+++|.+++.|++++.|++++.+..+  +|+++++.|.|++.++++..+.+.+..+..+
T Consensus        91 ~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~~~  158 (161)
T cd03359          91 QIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEETK  158 (161)
T ss_pred             EEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhhHh
Confidence            34444444444444444444444444444444433  5889999999999999988777777665444

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.67  E-value=8.4e-16  Score=122.86  Aligned_cols=108  Identities=31%  Similarity=0.323  Sum_probs=80.4

Q ss_pred             ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  184 (271)
Q Consensus       105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~  184 (271)
                      +..||+++.|+.++.+...                  ....||+++.|++++.|.+..                   +..
T Consensus        62 ~i~IG~~v~I~~~~~i~~~------------------~~i~IG~~v~Ig~~~~I~~~~-------------------h~~  104 (169)
T cd03357          62 NIHIGDNFYANFNCTILDV------------------APVTIGDNVLIGPNVQIYTAG-------------------HPL  104 (169)
T ss_pred             cCEECCCceEcCCEEEecc------------------CcEEECCCCEECCCCEEEeCC-------------------CCC
Confidence            6778888888877777421                  167777777777777665421                   000


Q ss_pred             EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      ...+.   .......++++||++|+||.+++|.++++||++++|+++++|.+|+|++++|.|+||+.+
T Consensus       105 ~~~~~---~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkvi  169 (169)
T cd03357         105 DPEER---NRGLEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI  169 (169)
T ss_pred             ChhHc---cccceecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEEC
Confidence            00000   012234567999999999999999999999999999999999999999999999999754

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.66  E-value=1e-14  Score=115.90  Aligned_cols=92  Identities=22%  Similarity=0.420  Sum_probs=56.4

Q ss_pred             CCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeEEccCCceecCCce
Q 024191           63 VGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL  141 (271)
Q Consensus        63 ~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~  141 (271)
                      +++.+.+.++|++++.|++++.|.++++|+++|.|++++.|. +++|+++|.|++++.|.                    
T Consensus        10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~--------------------   69 (163)
T cd05636          10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK--------------------   69 (163)
T ss_pred             CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe--------------------
Confidence            333444444455555555555555555566666666666663 56777777777777775                    


Q ss_pred             eceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE
Q 024191          142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI  180 (271)
Q Consensus       142 ~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i  180 (271)
                       +++|++++.|++++.+.     ++.|++++.+++++.+
T Consensus        70 -~siig~~~~I~~~~~i~-----~siIg~~~~I~~~~~i  102 (163)
T cd05636          70 -NSIIMDGTKVPHLNYVG-----DSVLGENVNLGAGTIT  102 (163)
T ss_pred             -eeEecCCCEeccCCEEe-----cCEECCCCEECCCcEE
Confidence             77777777777777663     3556655555555554

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.65  E-value=5.1e-15  Score=120.57  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  241 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~  241 (271)
                      +++.|+++|+|+.++.+.++++||+++.|+++++|.+++.++++++. |.++.+.+++.+.
T Consensus        87 ~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~  147 (196)
T PRK13627         87 HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDD  147 (196)
T ss_pred             eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHH
Confidence            55677888888888888889999999999999999999999877655 5566777777643

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.65  E-value=3.3e-15  Score=110.32  Aligned_cols=56  Identities=30%  Similarity=0.382  Sum_probs=52.3

Q ss_pred             eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      .+.++++||++|+|+.++.|.++++|+++++|++++.+.+|+|+++++.|.||+.+
T Consensus        52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~~  107 (107)
T cd05825          52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV  107 (107)
T ss_pred             eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCcCCCCCEEECCccEeC
Confidence            34578999999999999999999999999999999999999999999999999863

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.64  E-value=1.1e-14  Score=112.62  Aligned_cols=125  Identities=22%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      |++.+++++++.|++++.|.++++++.++.|++++.|.+++.|++++           .|+++|.|++++.++...    
T Consensus         4 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~-----------~IG~~~~I~~~~~igg~~----   68 (139)
T cd03350           4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCA-----------QIGKNVHLSAGAVIGGVL----   68 (139)
T ss_pred             cCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCC-----------EECCCCEECCCCEECCcc----
Confidence            55556666666666665555555555555555555555444444433           344555555555553100    


Q ss_pred             EccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCc
Q 024191          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV  208 (271)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~  208 (271)
                                                    .+...+++.|++++.++.++.+..++.|++++.|+.++.+.+++.|+++ 
T Consensus        69 ------------------------------~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~-  117 (139)
T cd03350          69 ------------------------------EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR-  117 (139)
T ss_pred             ------------------------------cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc-
Confidence                                          0001134555666666666666677777778888888888888888888 


Q ss_pred             EEccccEECCCCE
Q 024191          209 TLGGRVAVRDHVS  221 (271)
Q Consensus       209 ~Ig~~~~i~~~~~  221 (271)
                        ++++++.+++.
T Consensus       118 --~~~~~v~~~~~  128 (139)
T cd03350         118 --ETGEIYYGRVP  128 (139)
T ss_pred             --CcccEEecccC
Confidence              99999998654

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.63  E-value=1e-14  Score=114.72  Aligned_cols=108  Identities=25%  Similarity=0.319  Sum_probs=72.7

Q ss_pred             ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191           91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  169 (271)
Q Consensus        91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig  169 (271)
                      +++++.|.+++.| .++.||+++.|++++.|....                 ..++||+++.|++++.+....       
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~-----------------~~~~IG~~~~I~~~~~I~~~~-------   57 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDV-----------------NPIRIGERTNIQDGSVLHVDP-------   57 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCC-----------------CceEECCCCEECCCcEEecCC-------
Confidence            3445555555555 567777777777777665211                 145666666666666554210       


Q ss_pred             CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191          170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV  234 (271)
Q Consensus       170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v  234 (271)
                                 ..++.|+++++++.++.+.+ +.|+++++|+.++.+.++++|++++.|++++.+
T Consensus        58 -----------~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v  110 (153)
T cd04645          58 -----------GYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV  110 (153)
T ss_pred             -----------CCCeEEcCCcEECCCcEEee-eEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence                       02366677777766666654 889999999999999999999999999988877

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.62  E-value=2.2e-14  Score=113.77  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=44.3

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCCC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITE  240 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~~  240 (271)
                      +.|++++.|+.++.+..+++|+++++|+.+++|.+++.+++++++++ ++.+.+++++
T Consensus        90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~  147 (161)
T cd03359          90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPE  147 (161)
T ss_pred             eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecch
Confidence            44555555555555566788888999999999999999999999987 7788888873

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.62  E-value=1.7e-14  Score=138.12  Aligned_cols=86  Identities=29%  Similarity=0.322  Sum_probs=70.9

Q ss_pred             CCeEECCCcEECCCcEEccc-cEECCCCEEccccee-----------ccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          164 RDTVIGDHSKIDNLVQIGHN-VAIGKSCMLCGQVGI-----------AGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       164 ~~~~ig~~~~i~~~~~i~~~-~~ig~~~~i~~~~~i-----------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      .+++||+++.++......++ +.||++|.|+.++.+           .++++||++|+||.+++|.++++||+++.|+++
T Consensus       596 lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~  675 (695)
T TIGR02353       596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPD  675 (695)
T ss_pred             CCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            35889999888876444333 355555555555554           557999999999999999999999999999999


Q ss_pred             cEEec--cCCCCCeEEcCCC
Q 024191          232 SCVFK--DITEPGDYGGFPA  249 (271)
Q Consensus       232 s~v~~--~~~~~~~~~g~p~  249 (271)
                      |++.+  ++|+++.|.|+|+
T Consensus       676 SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       676 SLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             CEEcCCcccCCCCEEEeccC
Confidence            99999  8999999999996

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.62  E-value=2.1e-15  Score=135.84  Aligned_cols=148  Identities=19%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             eeeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCE
Q 024191            5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV   84 (271)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~   84 (271)
                      ..++.|.+ +++|.++++++++++++..++.......+......+.+.+.+.+++.|++++.| .++.|+++|.|+.  .
T Consensus       230 ~~v~~~~~-~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~  305 (380)
T PRK05293        230 EKLYAYPF-KGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--T  305 (380)
T ss_pred             CeEEEEEe-CCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--e
Confidence            35788888 889999999999999986665433222333344456666666667777777777 3556666666642  2


Q ss_pred             ECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcC
Q 024191           85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR  164 (271)
Q Consensus        85 I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~  164 (271)
                      +. ++.|+++|.|+++|.|.+|+|++++.|++++.|.                     +++|++++.|+.++.+..+...
T Consensus       306 v~-~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~~~  363 (380)
T PRK05293        306 VE-HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIE---------------------RAIIGENAVIGDGVIIGGGKEV  363 (380)
T ss_pred             ec-ceEEcCCCEECCCCEEECCEEeCCCEECCCeEEe---------------------EEEECCCCEECCCCEEcCCCce
Confidence            33 5778888888888888889999999999998886                     8888888888888888765333


Q ss_pred             CeEECCCcEECCCc
Q 024191          165 DTVIGDHSKIDNLV  178 (271)
Q Consensus       165 ~~~ig~~~~i~~~~  178 (271)
                      +..||+++.+..++
T Consensus       364 ~~~ig~~~~~~~~~  377 (380)
T PRK05293        364 ITVIGENEVIGVGT  377 (380)
T ss_pred             eEEEeCCCCCCCCc
Confidence            34455554444443

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=2.5e-15  Score=131.07  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV   85 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I   85 (271)
                      .+++|+| .+||.|+++++.+|++|..|+...+...+.+++++|+......|++++..++.+ .++.++++|.|..  .|
T Consensus       234 ~v~AY~f-~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V  309 (393)
T COG0448         234 KVYAYEF-SGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TV  309 (393)
T ss_pred             CEEEEec-cchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EE
Confidence            4899999 999999999999999999999866667778899999999999999999999987 4778888888844  55


Q ss_pred             CCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191           86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (271)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~  161 (271)
                      . +++|+.++.|+.+|.|++|+|..+|.||.+|.|.                     .++|+++|.|++++.|...
T Consensus       310 ~-nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~---------------------~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         310 E-NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR---------------------RAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             E-eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE---------------------EEEeCCCcEeCCCcEEcCC
Confidence            4 6779999999999999999999999999999997                     9999999999999888654

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1.7e-15  Score=134.73  Aligned_cols=117  Identities=29%  Similarity=0.451  Sum_probs=89.9

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV   85 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I   85 (271)
                      .++.|.+ +++|.|+++++++++++..+........+..    +...+..     +.. +.|.++++|++++.|++++.|
T Consensus       208 ~v~~~~~-~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~----~~~~~~~-----~~~-~~i~gp~~ig~~~~i~~~~~i  276 (358)
T COG1208         208 DVYGYVF-EGYWLDIGTPEDLLEANELLLRGDGKSPLGP----IEEPVVI-----IRS-AYIIGPVVIGPGAKIGPGALI  276 (358)
T ss_pred             cEEEEEe-CCeEEeCCCHHHHHHHHHHHHhccccccccc----ccccccc-----ccc-ceEeCCEEECCCCEECCCCEE
Confidence            4899999 8899999999999999876664221111111    1111111     555 677777888888888888888


Q ss_pred             CCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECC
Q 024191           86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  154 (271)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~  154 (271)
                      +++++||++|.|++++.|.+|+|.++|.|++++.+.                     +++|+++|.|++
T Consensus       277 ~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~---------------------~sIi~~~~~ig~  324 (358)
T COG1208         277 GPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG---------------------DSIIGENCKIGA  324 (358)
T ss_pred             CCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEe---------------------eeEEcCCcEECC
Confidence            888888999999999999999999999999999997                     888888888875

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.60  E-value=5.7e-15  Score=125.09  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=78.4

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .+.|+..+.||.++.|..+  ..++||+++.|++++.|.++++||....   ... ..+.+||++|+||+++.|.++++|
T Consensus       141 gidI~~~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~---~~~-~~~p~IGd~V~IGaga~Ilggv~I  214 (273)
T PRK11132        141 QVDIHPAAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGK---TSG-DRHPKIREGVMIGAGAKILGNIEV  214 (273)
T ss_pred             eeEecCcceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcc---cCC-CcCCEECCCcEEcCCCEEcCCCEE
Confidence            6777777777777777643  2345555555555544444444442110   000 124799999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++++|+++|+|.+|+|+++++.|+||+.+...
T Consensus       215 G~~a~IGAgSvV~~dVp~~~~v~G~PArvi~~~  247 (273)
T PRK11132        215 GRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKP  247 (273)
T ss_pred             CCCCEECCCCEECcccCCCcEEEecCcEEeCcc
Confidence            999999999999999999999999999987644

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.58  E-value=3.9e-15  Score=136.22  Aligned_cols=182  Identities=13%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             eeeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCE
Q 024191            5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV   84 (271)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~   84 (271)
                      ..++.|.+ ++||.++++++++++++..++...+...+......|.......+++.+ .++.|.+ ++|+++|.|+ +|.
T Consensus       253 ~~v~~~~~-~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~  328 (436)
T PLN02241        253 YNVQAYLF-DGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECK  328 (436)
T ss_pred             CeEEEEee-CCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeE
Confidence            46889999 899999999999999998776544333333433344443333344444 3444543 5566666666 666


Q ss_pred             ECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcC
Q 024191           85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR  164 (271)
Q Consensus        85 I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~  164 (271)
                      |. +++|+++|.|+++|.|.+++|........+...                      ..+...++             .
T Consensus       329 I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~----------------------~~~~~~~~-------------~  372 (436)
T PLN02241        329 IE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEI----------------------ASLLAEGK-------------V  372 (436)
T ss_pred             EE-eeEEcCCCEECCCCEEEEeEEECCCcccccccc----------------------ccccccCC-------------c
Confidence            64 345666666666655544444221111110000                      00000000             0


Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      .+.|++++.+. ++.+++++.||+++.+.....+.+..++|++|.++.+.     +.||+++.|.++|
T Consensus       373 ~~~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~  434 (436)
T PLN02241        373 PIGIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGT  434 (436)
T ss_pred             ceEECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCC
Confidence            12445555554 35566667777777777777777777777777777763     3444455555544

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.58  E-value=1.2e-14  Score=118.38  Aligned_cols=59  Identities=32%  Similarity=0.370  Sum_probs=54.6

Q ss_pred             eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191          198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~  256 (271)
                      ..++++||++||||++++|+++++||++++|+++|+|+||+|+++.+.|+||+.++...
T Consensus       121 ~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~  179 (190)
T COG0110         121 GAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRD  179 (190)
T ss_pred             ecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEecc
Confidence            35679999999999999999999999999999999999999999999999999886543

>PLN02694 serine O-acetyltransferase

Probab=99.58  E-value=1.9e-14  Score=121.94  Aligned_cols=107  Identities=27%  Similarity=0.363  Sum_probs=80.6

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .+.|+..+.||.++.|..+  ..++||+++.|++++.|.+++++|..   +..+. ..+++||++|+||+++.|.++++|
T Consensus       160 gvdI~p~A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~-~r~piIGd~V~IGagA~Ilggi~I  233 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGT---GKACG-DRHPKIGDGVLIGAGATILGNVKI  233 (294)
T ss_pred             eEEeCCcceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCc---ccccC-CCccEECCCeEECCeeEECCCCEE
Confidence            5556666666666666543  24566666666666666666665542   11111 246899999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++++|+++++|.+|+|+++++.|+|++.+...
T Consensus       234 Gd~a~IGAgSVV~kdVP~~~~v~G~PAkiv~~~  266 (294)
T PLN02694        234 GEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGK  266 (294)
T ss_pred             CCCCEECCCCEECCcCCCCcEEEccCcEEEccC
Confidence            999999999999999999999999999998863

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.58  E-value=9.7e-14  Score=132.99  Aligned_cols=92  Identities=22%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             CeEECCCcEECC-------CcEEccccEECCCCEE-----cccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          165 DTVIGDHSKIDN-------LVQIGHNVAIGKSCML-----CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       165 ~~~ig~~~~i~~-------~~~i~~~~~ig~~~~i-----~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      ..+||+++.+..       -.+|++++.|++++.+     .++....+.++||++++||.++++.+|+++|+++.++.+|
T Consensus       353 GAkIGk~v~i~t~~~~~pdLltIG~g~~iad~v~~~~~~~~~g~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S  432 (695)
T TIGR02353       353 GAKIGKVAEISSAQHEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLS  432 (695)
T ss_pred             CCeeCCCeEeccccCCCCcceEECCCcEeccCcEEeeeEEeCCeEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecc
Confidence            355666655543       1334444444444443     3344455679999999999999999999999999999999


Q ss_pred             EEec--cCCCCCeEEcCCCchhhHHH
Q 024191          233 CVFK--DITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       233 ~v~~--~~~~~~~~~g~p~~~i~~~~  256 (271)
                      .+++  .+++++.|.|.|+..++..+
T Consensus       433 ~~p~~~~~~~g~~w~GSPa~~l~~~~  458 (695)
T TIGR02353       433 MTPKDGKVREGVGWLGSPPFELPRRV  458 (695)
T ss_pred             cCCCCccCCCCCEEeCCCCeeCCccc
Confidence            9987  58899999999998887543

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PLN02739 serine acetyltransferase

Probab=99.57  E-value=7.5e-15  Score=126.75  Aligned_cols=107  Identities=30%  Similarity=0.353  Sum_probs=78.2

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ++.|+..+.||.++.|..+  ..++||+++.|++++.|.++++||....    ..-..+.+||++|+||+++.|.++++|
T Consensus       205 GidI~p~A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~----~~g~r~p~IGd~V~IGagA~IlG~V~I  278 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGK----ETGDRHPKIGDGALLGACVTILGNISI  278 (355)
T ss_pred             CcccCCCccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCC----cCCCCCcEECCCCEEcCCCEEeCCeEE
Confidence            5566666777766666532  2455555555555555555444442210    001235899999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++++|+++++|.+|+|+++++.|+||+.++..
T Consensus       279 Gd~aiIGAGSVV~kDVP~~stvvG~PAriI~~~  311 (355)
T PLN02739        279 GAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFV  311 (355)
T ss_pred             CCCCEECCCCEECCCCCCCcEEEecCCEEeccC
Confidence            999999999999999999999999999988753

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.57  E-value=9.7e-14  Score=113.95  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=40.9

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      ..++.||++++++.++.+.++++||+++.|+++++|.++  +++++++.+..
T Consensus       106 ~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~P  155 (204)
T TIGR03308       106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVP  155 (204)
T ss_pred             CCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecC
Confidence            356778888888888888889999999999999999985  67787776543

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PLN02296 carbonate dehydratase

Probab=99.56  E-value=1.5e-13  Score=116.91  Aligned_cols=140  Identities=18%  Similarity=0.245  Sum_probs=89.0

Q ss_pred             EECCCcEECCCCEECcCcEECCCcEECCCCEECCC---cEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEc
Q 024191           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD  130 (271)
Q Consensus        54 ~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~---~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~  130 (271)
                      .|++++.|.+++.|.+++.||+++.|+++|+|.+.   +.||++|.|+++|.|....    +.+.  ...          
T Consensus        54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~----~~~~--g~~----------  117 (269)
T PLN02296         54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAK----TNLS--GKV----------  117 (269)
T ss_pred             ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCC----Cccc--CCC----------
Confidence            34444444444444445556666666666666543   3555555555554442110    0000  000          


Q ss_pred             cCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEE
Q 024191          131 EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTL  210 (271)
Q Consensus       131 ~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~I  210 (271)
                                 ..++||+++.|++++++                       +++.|+++|+|+.++.+.++++|++++.|
T Consensus       118 -----------~~siIG~~v~IG~~avI-----------------------~g~~Igd~v~IG~ga~I~~gv~Ig~~a~I  163 (269)
T PLN02296        118 -----------LPTIIGDNVTIGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVEKHAMV  163 (269)
T ss_pred             -----------CCcEeCCCCEECCCcee-----------------------cCCEECCCcEECCCcEECCCeEECCCCEE
Confidence                       15666666666666544                       45677777777888888899999999999


Q ss_pred             ccccEECCCCEECCCcEE-cCCcEEeccCCCCCe
Q 024191          211 GGRVAVRDHVSIASKVRL-AANSCVFKDITEPGD  243 (271)
Q Consensus       211 g~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~~~  243 (271)
                      +++++|.+++.|++++++ +.++.+.+++++...
T Consensus       164 gagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~  197 (269)
T PLN02296        164 AAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEI  197 (269)
T ss_pred             CCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHH
Confidence            999999999999999986 666777788876554

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.55  E-value=2.1e-13  Score=107.45  Aligned_cols=59  Identities=17%  Similarity=0.336  Sum_probs=44.1

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc-CCcEEeccCCCC
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITEP  241 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~-~~s~v~~~~~~~  241 (271)
                      ++.||++++|+.++.+.++++|+++++|++++++.+++.|++++++. .++.+.+++++.
T Consensus        78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~  137 (155)
T cd04745          78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDE  137 (155)
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHH
Confidence            35566666666666667788999999999999999999999998874 444555665533

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.55  E-value=9.4e-14  Score=112.76  Aligned_cols=60  Identities=13%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  241 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~  241 (271)
                      +++.|+++++|+.++.+..+++||+++.|++++.|.+++.+++++++ +.++.+.+.+.+.
T Consensus        85 ~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~  145 (192)
T TIGR02287        85 HGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQ  145 (192)
T ss_pred             cCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHH
Confidence            44666666666666667778899999999999999999999999886 4556676776653

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.55  E-value=7.4e-14  Score=110.68  Aligned_cols=50  Identities=28%  Similarity=0.484  Sum_probs=48.1

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCc
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAV  250 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~  250 (271)
                      ..+||++|+|++++.|..+++||+++.|+++++|.+|+|+++++.|+||+
T Consensus       113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G~Par  162 (162)
T TIGR01172       113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPAR  162 (162)
T ss_pred             CCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEeecCC
Confidence            47999999999999999999999999999999999999999999999986

Cysteine biosynthesis

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.55  E-value=1.5e-14  Score=128.98  Aligned_cols=104  Identities=20%  Similarity=0.255  Sum_probs=57.5

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV   85 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I   85 (271)
                      .++.|.+ +++|.++++++++++++..++..... .+ .   .+.+.+.+.+++.|++++.| ++++|.+++.||++|.|
T Consensus       208 ~v~~~~~-~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I  280 (353)
T TIGR01208       208 KVGGSKV-TGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCII  280 (353)
T ss_pred             eEEEEEe-CcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEE
Confidence            5888999 89999999999999998777664321 11 1   13444445555555555555 34444444444444444


Q ss_pred             CCCcEECCCCEECCccE-----EcceEECCCcEECCC
Q 024191           86 GPAVTIGQSTNIGFNVA-----LSNCIIGDSCIIHNG  117 (271)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~-----I~~~~Ig~~~~I~~~  117 (271)
                      + ++.|.++|.|+++|.     |.+++|++++.|+++
T Consensus       281 ~-~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~  316 (353)
T TIGR01208       281 E-NSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGV  316 (353)
T ss_pred             c-CcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCC
Confidence            3 223333333333333     344444444444444

Alternate name: dTDP-D-glucose synthase

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.55  E-value=1.1e-13  Score=107.57  Aligned_cols=135  Identities=21%  Similarity=0.165  Sum_probs=88.9

Q ss_pred             eEECCCcEECC-CCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191          106 CIIGDSCIIHN-GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  184 (271)
Q Consensus       106 ~~Ig~~~~I~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~  184 (271)
                      ..||+++.|+. .+.+..                   ..+.||++|.|++++.+..+..++.   ++....+. ....+.
T Consensus         2 ~~iG~~s~i~~~~~~~~~-------------------~~i~IG~~~~I~~~v~i~~~~~H~~---~~~~~~p~-~~~~~~   58 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGG-------------------DKLSIGKFCSIAPGVKIGLGGNHPT---DWVSTYPF-YIFGGE   58 (145)
T ss_pred             EEEeCceeeCCCCceEeC-------------------CCeEECCCCEECCCCEECCCCCCCC---CCccccce-Eeeccc
Confidence            46788888877 455542                   2688888888888888765311110   00000000 000000


Q ss_pred             EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH--HHHHHh
Q 024191          185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR--RQVANQ  262 (271)
Q Consensus       185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~--~~~~~~  262 (271)
                      ..++  ..........++.||++|+||.+++|.+++.|+++++|+++++|.+|+|++++++|+||+.++.+.  +..+.+
T Consensus        59 ~~~~--~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~~~~~~~~~  136 (145)
T cd03349          59 WEDD--AKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRFDEETIERL  136 (145)
T ss_pred             cccc--cccccccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhCCHHHHHHH
Confidence            0000  111122345679999999999999999999999999999999999999999999999999998753  334444


Q ss_pred             hcc
Q 024191          263 IRS  265 (271)
Q Consensus       263 ~r~  265 (271)
                      .++
T Consensus       137 ~~~  139 (145)
T cd03349         137 LAL  139 (145)
T ss_pred             HHC
Confidence            443

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.54  E-value=4e-13  Score=112.26  Aligned_cols=161  Identities=17%  Similarity=0.230  Sum_probs=97.9

Q ss_pred             ccHHHHHHHHhhhccCCCCCch---h-hhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCc
Q 024191           14 KTYKQDFGRFCNLFSTKSDIES---R-QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV   89 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~   89 (271)
                      ...|.++....++|........   . .+...+......|++++.+.+++.|++++.|++++.|+.++.||++|.|++++
T Consensus        50 ~Di~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a  129 (231)
T TIGR03532        50 EDIEPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNA  129 (231)
T ss_pred             HHHHHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEcccc
Confidence            3348888888888876431111   0 12223445566778888777778888888777777777777777777777776


Q ss_pred             EECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191           90 TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  169 (271)
Q Consensus        90 ~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig  169 (271)
                      .|+.++.|+++|.     |+.++.|..  .+..                    ..                         
T Consensus       130 ~I~~~s~Ig~~~~-----Ig~~~~I~~--~~~~--------------------~~-------------------------  157 (231)
T TIGR03532       130 VLGGRATVGKNVH-----IGAGAVLAG--VIEP--------------------PS-------------------------  157 (231)
T ss_pred             ccCCCcEECCCcE-----EcCCcEEcc--cccc--------------------cc-------------------------
Confidence            6666666666644     444444443  1221                    00                         


Q ss_pred             CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEeccCC
Q 024191          170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDIT  239 (271)
Q Consensus       170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~~~~  239 (271)
                                 ...+.|+++|+++.++.+.++++||++++|+++++|.++  +++++++.+. +.+.+.++
T Consensus       158 -----------~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~~i~~~~  215 (231)
T TIGR03532       158 -----------AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAKVIKQVD  215 (231)
T ss_pred             -----------CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEeccCC
Confidence                       022344444444555555667888889999999998874  5666666543 33444444

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PLN02472 uncharacterized protein

Probab=99.54  E-value=2.6e-13  Score=114.01  Aligned_cols=59  Identities=10%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITE  240 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~~  240 (271)
                      +++.|+++|.|+.++.+..+++|++++.|+++++|.++..++++.+..+ ++.+.+++.+
T Consensus       142 ~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~  201 (246)
T PLN02472        142 RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN  201 (246)
T ss_pred             CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence            3456666666666666777889999999999999999999999988854 4455556654

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.54  E-value=2.4e-13  Score=114.19  Aligned_cols=145  Identities=19%  Similarity=0.209  Sum_probs=79.4

Q ss_pred             ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      +...+.++.+++.+++++.|+++++|.+. .+..++.||++|+|..++.|++++.||+           +|+|..++.|+
T Consensus        96 ~~~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~-----------nv~I~~g~~Ig  163 (269)
T TIGR00965        96 FKKAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGK-----------NVHLSGGVGIG  163 (269)
T ss_pred             eecCCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECC-----------CCEEcCCcccC
Confidence            44455666666666666666666666543 4555555555555555555555444443           44444443332


Q ss_pred             CCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccC
Q 024191          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS  201 (271)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~  201 (271)
                      ..                                  +.+...+++.|++++.|+.++.|.+++.|++++.|+.++.+.++
T Consensus       164 G~----------------------------------~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~  209 (269)
T TIGR00965       164 GV----------------------------------LEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS  209 (269)
T ss_pred             CC----------------------------------cccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence            10                                  00001133444444444444444555666666666666666666


Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcCCcEEecc
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD  237 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~  237 (271)
                      +.|.+..   .+.++.+  .|++++++.+|+...++
T Consensus       210 ~~I~~~~---~g~v~~~--~vp~~svv~~g~~p~~~  240 (269)
T TIGR00965       210 TKIYDRE---TGEIHYG--RVPAGSVVVSGNLPSKD  240 (269)
T ss_pred             CEEeccc---CCceeee--ecCCCcEEecCCeecCC
Confidence            6666655   4444433  58889999888887654

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK10191 putative acyl transferase; Provisional

Probab=99.54  E-value=8.6e-14  Score=107.77  Aligned_cols=102  Identities=25%  Similarity=0.294  Sum_probs=74.6

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      +..|...+.|++++.+..+  ..+.|+.++.+++++.+++++.||+....     ..+.++|||+|+||+++.+.+++.|
T Consensus        41 g~~I~~~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~-----~~~~~~IGd~~~Ig~~~~I~~~v~I  113 (146)
T PRK10191         41 GYEIQAAATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD-----NMACPHIGNGVELGANVIILGDITI  113 (146)
T ss_pred             CcccCCCCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC-----CCCCCEECCCcEEcCCCEEeCCCEE
Confidence            3334444444444444332  23555666666666666666666655322     2355799999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      |+++.|++++.+.+|+|+++++.|.||+.
T Consensus       114 G~~~~Igags~V~~dv~~~~~v~G~pA~~  142 (146)
T PRK10191        114 GNNVTVGAGSVVLDSVPDNALVVGEKARV  142 (146)
T ss_pred             CCCCEECCCCEECCccCCCcEEEccCcEE
Confidence            99999999999999999999999999975

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.53  E-value=2.5e-14  Score=114.59  Aligned_cols=90  Identities=30%  Similarity=0.379  Sum_probs=71.9

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  244 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~  244 (271)
                      ..+||+-+.+++++.+.|++.+|.-   +.++.-..+ .|||+++||+++.|.+++.||.+++|++||+|.||+|++++.
T Consensus       168 gvvigeTAvvg~~vSilH~Vtlggt---gk~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~A  243 (269)
T KOG4750|consen  168 GVVIGETAVVGDNVSILHPVTLGGT---GKGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLA  243 (269)
T ss_pred             ceeecceeEeccceeeecceeeccc---cccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCcee
Confidence            3566777777777777777776632   112223334 899999999999999999999999999999999999999999


Q ss_pred             EcCCCchhhHHHHH
Q 024191          245 GGFPAVPIHEWRRQ  258 (271)
Q Consensus       245 ~g~p~~~i~~~~~~  258 (271)
                      .|+||+.++...++
T Consensus       244 vGnPAklIg~~~e~  257 (269)
T KOG4750|consen  244 VGNPAKLIGKIDEK  257 (269)
T ss_pred             cCCchhhccccccc
Confidence            99999999965543

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.53  E-value=1.7e-13  Score=104.58  Aligned_cols=70  Identities=16%  Similarity=0.265  Sum_probs=58.1

Q ss_pred             CeEECCCcEEC----CCcEEccccEECCCCEEcccceeccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191          165 DTVIGDHSKID----NLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  236 (271)
Q Consensus       165 ~~~ig~~~~i~----~~~~i~~~~~ig~~~~i~~~~~i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~  236 (271)
                      ++.||+++++.    .++.|+|++.|++++.|.  +.+.++    +.||++|+||.+++|  ++.||++++|+++++|.|
T Consensus        31 ~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k  106 (147)
T cd04649          31 NAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTA  106 (147)
T ss_pred             CCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeC
Confidence            35556666655    778888888888888887  566667    999999999999999  799999999999999998


Q ss_pred             cC
Q 024191          237 DI  238 (271)
Q Consensus       237 ~~  238 (271)
                      ..
T Consensus       107 ~t  108 (147)
T cd04649         107 GT  108 (147)
T ss_pred             Ce
Confidence            65

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.51  E-value=4e-13  Score=102.52  Aligned_cols=38  Identities=26%  Similarity=0.533  Sum_probs=30.9

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ++.||++|+|+.++.+  ++.||+++.||++++|.++++|
T Consensus        73 pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i  110 (147)
T cd04649          73 VISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV  110 (147)
T ss_pred             CEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence            3677777777777777  5899999999999999998887

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.50  E-value=1.7e-14  Score=122.00  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=102.6

Q ss_pred             CccceeeEEeeccccHHHHHHHHhhhccCCCCCchhhh--hhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcE
Q 024191            1 MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQ--FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVC   78 (271)
Q Consensus         1 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~   78 (271)
                      ||....+|+|.+ +|||.|++++.+++++...++...+  -..-+.+++.|..++.+.+-+.+|++|.|++++.||++++
T Consensus       212 ~a~~~~l~a~~l-~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~  290 (371)
T KOG1322|consen  212 MAEEHQLYAFDL-PGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVR  290 (371)
T ss_pred             hhhcCceEEEec-CchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcE
Confidence            567788999999 9999999999999999655543221  1122333455777777778888888888888888888888


Q ss_pred             ECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEE
Q 024191           79 IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI  158 (271)
Q Consensus        79 Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i  158 (271)
                      |++++.|.+.+.+ .+..++.++.|..+.+|.++.||.++.|..                    +++||+++.|...-.+
T Consensus       291 i~~gV~l~~s~il-~~~~~~~~s~i~s~ivg~~~~IG~~~~id~--------------------~a~lG~nV~V~d~~~v  349 (371)
T KOG1322|consen  291 IEDGVRLQDSTIL-GADYYETHSEISSSIVGWNVPIGIWARIDK--------------------NAVLGKNVIVADEDYV  349 (371)
T ss_pred             ecCceEEEeeEEE-ccceechhHHHHhhhccccccccCceEEec--------------------ccEeccceEEeccccc
Confidence            8888888866666 457788888888888888888888887763                    6777777776655444


Q ss_pred             e
Q 024191          159 D  159 (271)
Q Consensus       159 ~  159 (271)
                      .
T Consensus       350 n  350 (371)
T KOG1322|consen  350 N  350 (371)
T ss_pred             c
Confidence            3

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.50  E-value=7.8e-13  Score=108.26  Aligned_cols=47  Identities=21%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      .++.++++++++.++.+.+++.|+++|+|++++++.++  +++++++.+
T Consensus       152 ~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g  198 (201)
T TIGR03570       152 GGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVG  198 (201)
T ss_pred             CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEe
Confidence            44455555555555666667888888888888888764  556655543

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.49  E-value=8.9e-13  Score=107.12  Aligned_cols=47  Identities=19%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      +++.|+++|+++.++.+.++++||+++.|+++++|.++  +++++++.+
T Consensus       149 ~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g  195 (197)
T cd03360         149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVG  195 (197)
T ss_pred             CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEe
Confidence            44555555666666666677888888888888888875  456665544

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PLN02357 serine acetyltransferase

Probab=99.49  E-value=1.7e-13  Score=119.33  Aligned_cols=107  Identities=28%  Similarity=0.386  Sum_probs=77.8

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .+.|+..+.||.++.+...  ..++||+++.|++++.|.++++||....-   .. ..+++||++|+||+++.|.++++|
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~---~g-~~~piIGd~V~IGagA~IlggV~I  299 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQ---SG-DRHPKIGDGVLIGAGTCILGNITI  299 (360)
T ss_pred             ceeeCCCCEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCcccc---CC-ccCceeCCCeEECCceEEECCeEE
Confidence            4456666666666655532  23555555555555555555555542110   00 235899999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++++|+++++|.+|+|+++++.|+||+.+...
T Consensus       300 Gdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~  332 (360)
T PLN02357        300 GEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK  332 (360)
T ss_pred             CCCCEECCCCEECcccCCCcEEECCCeEEEccC
Confidence            999999999999999999999999999998754

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.49  E-value=2.4e-13  Score=107.71  Aligned_cols=53  Identities=28%  Similarity=0.445  Sum_probs=51.0

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhh
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  253 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~  253 (271)
                      +-+||+++.||+++.|..+.+||+++.||++|+|.||+|+++++.|.||+.+.
T Consensus       119 hPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvPArii~  171 (194)
T COG1045         119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG  171 (194)
T ss_pred             CCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecCcceEec
Confidence            46899999999999999999999999999999999999999999999999987

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.5e-13  Score=125.04  Aligned_cols=130  Identities=25%  Similarity=0.371  Sum_probs=96.7

Q ss_pred             HHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCc
Q 024191           21 GRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN  100 (271)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~  100 (271)
                      .+|.+++-+...+.....+..       --.+.+-++.+.+...|.++.++.||.++.||.++.|. |++||.+|.||.+
T Consensus       291 ~RW~YP~Vpd~~~~~~q~~~~-------~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN  362 (673)
T KOG1461|consen  291 QRWTYPLVPDINFSGNQTFSL-------ERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSN  362 (673)
T ss_pred             HhhcccccccccCCCCceeee-------cccccccCccceehhhccccceEEecccccccCCCeee-cceecCCCEecCc
Confidence            666666665554443221111       11234457778888888888899999999999999998 6779999999999


Q ss_pred             cEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE
Q 024191          101 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI  180 (271)
Q Consensus       101 ~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i  180 (271)
                      +.|.++.|+++|.|+++|.|.                     +++|++++.|+.++++.++    +++|.+++++.+..+
T Consensus       363 ~~I~~S~iw~~v~Igdnc~I~---------------------~aii~d~v~i~~~~~l~~g----~vl~~~VVv~~~~~l  417 (673)
T KOG1461|consen  363 VRIKNSFIWNNVTIGDNCRID---------------------HAIICDDVKIGEGAILKPG----SVLGFGVVVGRNFVL  417 (673)
T ss_pred             eEEeeeeeecCcEECCCceEe---------------------eeEeecCcEeCCCcccCCC----cEEeeeeEeCCCccc
Confidence            999999999999999999997                     9999999999999888754    455555555444444


Q ss_pred             ccc
Q 024191          181 GHN  183 (271)
Q Consensus       181 ~~~  183 (271)
                      ..+
T Consensus       418 ~~n  420 (673)
T KOG1461|consen  418 PKN  420 (673)
T ss_pred             ccc
Confidence            444

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.46  E-value=1.1e-13  Score=126.41  Aligned_cols=101  Identities=10%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             eeeEEeeccccHHHHHHHHhhhccCCCCCc-hhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCC
Q 024191            5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIE-SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGT   83 (271)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~   83 (271)
                      ..++.|.+ ++||.++++++.+++++..+. ..........+...+...+.+.+++.+. ++.|. +++|+++|.| +++
T Consensus       245 ~~v~~~~~-~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~  320 (429)
T PRK02862        245 YKVQSYLF-DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLL-DATIT-ESIIAEGCII-KNC  320 (429)
T ss_pred             CcEEEEEe-CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCcccc-ccEEE-eCEECCCCEE-CCc
Confidence            35788888 899999999999999987765 3222222333344455555555666663 56664 4788888888 777


Q ss_pred             EECCCcEECCCCEECCccEEcceEECC
Q 024191           84 VVGPAVTIGQSTNIGFNVALSNCIIGD  110 (271)
Q Consensus        84 ~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~  110 (271)
                      .|. +++|+++|.|+++|.|.+|+|+.
T Consensus       321 ~i~-~svi~~~~~Ig~~~~i~~svi~~  346 (429)
T PRK02862        321 SIH-HSVLGIRSRIESGCTIEDTLVMG  346 (429)
T ss_pred             EEE-EEEEeCCcEECCCCEEEeeEEec
Confidence            776 56788888888888888877765

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.46  E-value=1.2e-12  Score=95.56  Aligned_cols=98  Identities=30%  Similarity=0.445  Sum_probs=66.4

Q ss_pred             EECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECC
Q 024191          145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS  224 (271)
Q Consensus       145 ~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~  224 (271)
                      .|++++.|++++.+...  ..+.|++++.+++++.+..++.|++++.+    ....+++||++++|+.++.+.++++|++
T Consensus         4 ~i~~~~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~   77 (101)
T cd03354           4 DIHPGAKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQGVTLGGKGKG----GGKRHPTIGDNVVIGAGAKILGNITIGD   77 (101)
T ss_pred             EeCCCCEECCCEEECCC--CeEEECCCCEECCCCEEcCCCEECCCccC----CcCCCCEECCCcEEcCCCEEECcCEECC
Confidence            34444444444444321  12334444444444444344444433332    1457789999999999999999999999


Q ss_pred             CcEEcCCcEEeccCCCCCeEEcCC
Q 024191          225 KVRLAANSCVFKDITEPGDYGGFP  248 (271)
Q Consensus       225 ~~~i~~~s~v~~~~~~~~~~~g~p  248 (271)
                      +++|++++.+.+++|++.++.|.|
T Consensus        78 ~~~i~~~~~i~~~~~~~~~~~G~P  101 (101)
T cd03354          78 NVKIGANAVVTKDVPANSTVVGVP  101 (101)
T ss_pred             CCEECCCCEECcccCCCCEEEeCC
Confidence            999999999999999999999998

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.46  E-value=1.7e-12  Score=110.03  Aligned_cols=144  Identities=19%  Similarity=0.197  Sum_probs=74.2

Q ss_pred             ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      |...+.+|.+++++++++.|++++.|.+ +.++.++.|+++|+|..++.|+++|           .||++++|++++.|+
T Consensus        99 ~~~~~~rI~p~a~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~a~IG~~a-----------~IG~nv~I~~gv~I~  166 (272)
T PRK11830         99 FKEAGVRVVPGAVVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCA-----------QIGKNVHLSGGVGIG  166 (272)
T ss_pred             hccCCcEEcCCeEECCCCEECCCcEEEE-EEECCCCEECCCcEEccccEECCCC-----------EECCCcEECCCccCC
Confidence            3455555555555555555555555552 4444444444444444444443333           345555555555543


Q ss_pred             CCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccC
Q 024191          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS  201 (271)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~  201 (271)
                      ...            .......++||++|.|+.++                      .+..++.||+++.|+.++.+..+
T Consensus       167 g~~------------~~~~~~~viIgDnv~IGa~s----------------------~I~~Gv~IGdgavIgag~vV~~g  212 (272)
T PRK11830        167 GVL------------EPLQANPVIIEDNCFIGARS----------------------EVVEGVIVEEGSVLGMGVFLGQS  212 (272)
T ss_pred             CCc------------cccCcCCeEEcCCCEECCCC----------------------EEcCCCEECCCCEEcCCCEEcCC
Confidence            100            00000134555555555444                      44455555656665555555566


Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  236 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~  236 (271)
                      +.|.+.+   +++++..  .|++++++.+|+...+
T Consensus       213 t~I~~~~---~g~v~~g--~vp~~svvv~g~~~~~  242 (272)
T PRK11830        213 TKIYDRE---TGEVHYG--RVPAGSVVVPGSLPSK  242 (272)
T ss_pred             eEECcCC---CCcEEee--ecCCCcEEecCccccc
Confidence            6666652   4555543  4788888888877665

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.45  E-value=1.4e-12  Score=96.28  Aligned_cols=56  Identities=30%  Similarity=0.343  Sum_probs=51.3

Q ss_pred             eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      ....++.||++|+|+.++.+.+++.|++++.+++++.+.+++|+++++.|.||+.+
T Consensus        54 ~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~i~~~~i~~g~pa~~~  109 (109)
T cd04647          54 VTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI  109 (109)
T ss_pred             cccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEeeECCCCCEEEccccEeC
Confidence            34567999999999999999999999999999999999999999999999999864

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.45  E-value=3.1e-12  Score=100.60  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE-EcCCcEEeccCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFKDIT  239 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~-i~~~s~v~~~~~  239 (271)
                      +++.|+++++++.++.+..+++|++++++++++.+.++..++++++ .+.++.+.++++
T Consensus        77 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~  135 (154)
T cd04650          77 HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLT  135 (154)
T ss_pred             ECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCC
Confidence            3455666666666666677889999999999999999999999999 566677766655

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.43  E-value=5.7e-13  Score=110.32  Aligned_cols=26  Identities=15%  Similarity=0.247  Sum_probs=17.2

Q ss_pred             ccCcEECCCcEEccccEECCCCEECC
Q 024191          199 AGSATIGDYVTLGGRVAVRDHVSIAS  224 (271)
Q Consensus       199 ~~~v~Ig~~~~Ig~~~~i~~~~~ig~  224 (271)
                      .-++.+||+|.|+++++|.+++.|..
T Consensus       198 veGV~vGdg~VV~aGv~I~~~tki~~  223 (271)
T COG2171         198 VEGVIVGDGCVVAAGVFITQDTKIYD  223 (271)
T ss_pred             EeeeEeCCCcEEecceEEeCCcceEE
Confidence            34566777777777777777776643

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.41  E-value=6.3e-13  Score=119.28  Aligned_cols=131  Identities=18%  Similarity=0.265  Sum_probs=93.8

Q ss_pred             eeeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhccc-CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCC
Q 024191            5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWH-NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGT   83 (271)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~   83 (271)
                      ..++.|.+ +++|.|+++++++++++..++........+ .....+.....+.+++.|++++.| ++++||++|.|+  +
T Consensus       225 ~~v~~~~~-~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~  300 (369)
T TIGR02092       225 LNINAYEY-TGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--G  300 (369)
T ss_pred             CcEEEEec-CCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--e
Confidence            35788888 899999999999999987666543222222 112223333334466777777777 567777777775  2


Q ss_pred             EECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191           84 VVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (271)
Q Consensus        84 ~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~  161 (271)
                      .|. ++.|+++|.|+++|.|.+++|++++.|++++.+.                     +++||+++.|++++.+...
T Consensus       301 ~v~-~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~---------------------~~ii~~~~~v~~~~~~~~~  356 (369)
T TIGR02092       301 KVE-NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE---------------------NVIIDKDVVIEPNVKIAGT  356 (369)
T ss_pred             EEe-CCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE---------------------EEEECCCCEECCCCEeCCC
Confidence            344 5678888888888888888898899998888886                     7888888888888877543

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.41  E-value=3.2e-12  Score=108.60  Aligned_cols=37  Identities=22%  Similarity=0.566  Sum_probs=27.7

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      +.||++|+||.++.+  ++.||++|+|+++++|..++.|
T Consensus       251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence            666666666666666  6788888888888888877776

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.40  E-value=6.1e-13  Score=120.80  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=84.1

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEE-CCC--CEECcCcEECCCcEECCCCEECCCcE
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI-EVG--AIVHSKAVLGANVCIGSGTVVGPAVT   90 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I-~~~--~~I~~~~~Ig~~v~Ig~~~~I~~~~~   90 (271)
                      .+||.|+++++++++++..++.......+......+...+...+++.+ +..  ..+.++++|+++|.|+ ++.|. +++
T Consensus       256 ~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~sv  333 (407)
T PRK00844        256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSV  333 (407)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCE
Confidence            589999999999999988777543222222222223222222222222 211  1233557777777777 77776 577


Q ss_pred             ECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeC
Q 024191           91 IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  160 (271)
Q Consensus        91 Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~  160 (271)
                      |+++|.|+++|.|.+++|+++|.|++++.|.                     +++|++++.|++++++..
T Consensus       334 Ig~~~~I~~~~~i~~sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        334 LSPNVVVESGAEVEDSVLMDGVRIGRGAVVR---------------------RAILDKNVVVPPGATIGV  382 (407)
T ss_pred             ECCCCEECCCCEEeeeEECCCCEECCCCEEE---------------------eeEECCCCEECCCCEECC
Confidence            8888888888888888899999999998886                     788888888888876653

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.3e-12  Score=106.90  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=96.1

Q ss_pred             ccceeeEEeeccccHHHHHHHHhhhccCCCCCchhhh---hhccc-C--CCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191            2 AVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQ---FQKWH-N--GGGIFHQSACIDSTVLIEVGAIVHSKAVLGA   75 (271)
Q Consensus         2 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~   75 (271)
                      |=+..+|.|.. .++|..+.++...+.+++.++....   ...+. .  ..+.|-.+++|++++++.+.++|+||+.||.
T Consensus       233 ag~k~lY~y~t-~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga  311 (407)
T KOG1460|consen  233 AGSKQLYAYET-TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGA  311 (407)
T ss_pred             cCCCceEEEec-ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecC
Confidence            44567888888 9999999999999999987776432   12222 1  2234777888888899999999999999999


Q ss_pred             CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191           76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (271)
Q Consensus        76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~  123 (271)
                      +++||+|++|... .|-++++|.+|+.+-+++||..+.||-.+.+...
T Consensus       312 ~vrvg~GvRl~~s-IIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~  358 (407)
T KOG1460|consen  312 NVRVGPGVRLRES-IILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI  358 (407)
T ss_pred             CceecCCceeeee-eeccCcEeeccceEEeeeecccccccceeeeccc
Confidence            9999999999854 4558899999999999999999999999988743

>PRK10502 putative acyl transferase; Provisional

Probab=99.37  E-value=1.1e-11  Score=100.29  Aligned_cols=50  Identities=26%  Similarity=0.406  Sum_probs=41.3

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      ..++.||++|+|+.++.+.++++||+++.|++++++.++  +++++++++..
T Consensus       122 ~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~P  171 (182)
T PRK10502        122 TAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNP  171 (182)
T ss_pred             cCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCc
Confidence            366788888888888888999999999999999999985  66777665543

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=2.3e-12  Score=117.40  Aligned_cols=86  Identities=35%  Similarity=0.504  Sum_probs=71.4

Q ss_pred             cCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECC
Q 024191           69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN  148 (271)
Q Consensus        69 ~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~  148 (271)
                      .+++-++++++...|.++.++.||.++.||.++.|.+|+||.+|.||.+++|.                     ++.|++
T Consensus       314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~---------------------~S~iw~  372 (673)
T KOG1461|consen  314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIK---------------------NSFIWN  372 (673)
T ss_pred             cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEe---------------------eeeeec
Confidence            45777888888888999999999999999999999999999999999999997                     999999


Q ss_pred             CcEECCccEEeCCCcCCeEECCCcEECCCcEE
Q 024191          149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI  180 (271)
Q Consensus       149 ~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i  180 (271)
                      +|.|+.||.|.     .+.|++++.|++++.+
T Consensus       373 ~v~Igdnc~I~-----~aii~d~v~i~~~~~l  399 (673)
T KOG1461|consen  373 NVTIGDNCRID-----HAIICDDVKIGEGAIL  399 (673)
T ss_pred             CcEECCCceEe-----eeEeecCcEeCCCccc
Confidence            99999999885     3455554444444443

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.36  E-value=9.9e-12  Score=105.63  Aligned_cols=104  Identities=14%  Similarity=0.283  Sum_probs=82.8

Q ss_pred             ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeE-ECCCcE---ECCCcEE
Q 024191          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV-IGDHSK---IDNLVQI  180 (271)
Q Consensus       105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~-ig~~~~---i~~~~~i  180 (271)
                      +-+|.+++.|++.+.|..                    .+.||+++.|.+++.|..    ++. +|+.++   +..+++|
T Consensus       172 dyVvp~gVrI~~sa~Vr~--------------------gA~LGeGT~IM~~a~Vn~----nAgtiG~~~IEgrInsGavI  227 (341)
T TIGR03536       172 DYVVPKGVRIADTARVRL--------------------GAYVGEGTTVMHEGFINF----NAGTEGPSMVEGRISAGVMV  227 (341)
T ss_pred             heEccCCcEEcCCCeEcC--------------------CcEECCCCEEecCCEECc----CcEecCCceEecccccCCEE
Confidence            455666666666666653                    666777777777776663    344 777777   7788899


Q ss_pred             ccccEECCCCEEcccceeccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191          181 GHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  236 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~  236 (271)
                      ++++.||+++.|  +..+.++    +.||++|+||.++.|  ++.||++|+|++|++|..
T Consensus       228 Ghds~IG~gasI--g~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVta  283 (341)
T TIGR03536       228 GKGSDLGGGCST--MGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITA  283 (341)
T ss_pred             CCCCEECCCCEE--eEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeC
Confidence            999999999999  5577888    999999999999999  999999999999999863

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.35  E-value=1.4e-11  Score=100.62  Aligned_cols=57  Identities=26%  Similarity=0.393  Sum_probs=46.0

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCC
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDIT  239 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~  239 (271)
                      .+++.||++|||+.++.+.++++||++++|+++++|.++  +++++++++ ++.+.+.+.
T Consensus       129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~~  186 (203)
T PRK09527        129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREIN  186 (203)
T ss_pred             cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccCC
Confidence            467888999999999999999999999999999999986  566776644 444555553

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.34  E-value=1.5e-11  Score=104.08  Aligned_cols=106  Identities=15%  Similarity=0.291  Sum_probs=85.4

Q ss_pred             ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCe-EECCCcEECCCcEEccc
Q 024191          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT-VIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~-~ig~~~~i~~~~~i~~~  183 (271)
                      +-++-+++.|.+...+.                    ..+.||+++.|.+.+.+..    ++ .||+. ++  ++.|+++
T Consensus       147 ~yvvp~gVRI~~~~rVR--------------------lGAyLGeGtvVm~~a~VN~----nAgtIG~~-iI--~g~I~Hd  199 (319)
T TIGR03535       147 DYVVPTGVRIGDADRVR--------------------LGAHLAEGTTVMHEGFVNF----NAGTLGAS-MV--EGRISAG  199 (319)
T ss_pred             eeeCCCccEECCCceee--------------------eccEECCCCEEcCCCEEcc----CceEecCc-eE--EEEEccC
Confidence            44556677777666665                    3777788888887777774    46 68885 66  4889999


Q ss_pred             cEECCCCEEcccce----eccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCC
Q 024191          184 VAIGKSCMLCGQVG----IAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT  239 (271)
Q Consensus       184 ~~ig~~~~i~~~~~----i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~  239 (271)
                      +.||+++.|++++.    +.++    +.||++|+||+++.|  +..||++|+|++|++|.+..+
T Consensus       200 vvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~  261 (319)
T TIGR03535       200 VVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTK  261 (319)
T ss_pred             CEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeE
Confidence            99999999999998    4447    999999999999999  899999999999999987543

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.34  E-value=2.5e-12  Score=115.03  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEc-cCcEECCCcEECCCCEECcCcEECCCcEECCCCE
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFH-QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV   84 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~   84 (271)
                      -++.|.+ +++|.++++++++++++..++..............+. ....+.+.+.|++.+.| ++++|+++|.|+++ .
T Consensus       231 ~v~~~~~-~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~  307 (361)
T TIGR02091       231 SVQAYLF-SGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-T  307 (361)
T ss_pred             ceEEEee-CCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-E
Confidence            5788888 7999999999999999877665432211222112221 22344555666666655 45667777777665 5


Q ss_pred             ECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEE
Q 024191           85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI  158 (271)
Q Consensus        85 I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i  158 (271)
                      |. ++.|+++|.|+++|.|.+|+|++++.|++++.|.                     +++||+++.|++++.+
T Consensus       308 v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~---------------------~~ivg~~~~i~~~~~i  359 (361)
T TIGR02091       308 VS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR---------------------NAIIDKNVRIGEGVVI  359 (361)
T ss_pred             EE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe---------------------eeEECCCCEECCCCEe
Confidence            54 6678888888888888888888888988888885                     7888888888877755

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.33  E-value=3.9e-11  Score=97.83  Aligned_cols=118  Identities=16%  Similarity=0.179  Sum_probs=84.1

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeE---ECCCcEEC--CCc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV---IGDHSKID--NLV  178 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~---ig~~~~i~--~~~  178 (271)
                      ....||+++.|++++.|....                  .+.||++|.|+.++.|.....+...   .-.+..+.  ...
T Consensus        64 ~~i~IG~~v~Ig~~v~I~~~~------------------~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~  125 (192)
T PRK09677         64 GKLFFGDNVQVNDYVHIACIE------------------SITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRT  125 (192)
T ss_pred             CeEEECCCCEECCCcEEccCc------------------eEEECCCCEECCCeEEECCCCccccccccccccccChhhcc
Confidence            478999999999999997322                  7899999999999988753211000   00000011  011


Q ss_pred             EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191          179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  241 (271)
Q Consensus       179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~  241 (271)
                      ....++.|+++++++.++.+.++++||++|+|+++++|.++  +++++++ |.++.+.|...+.
T Consensus       126 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~  187 (192)
T PRK09677        126 LESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHE  187 (192)
T ss_pred             cccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCcc
Confidence            12367899999999999999999999999999999999985  6667666 4455566666543

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.32  E-value=3.2e-11  Score=87.83  Aligned_cols=85  Identities=20%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             CcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEcc
Q 024191           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  131 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  131 (271)
                      .+++++++.|++++.|.++++|++++.|++++.|.+++.||++|.|+.  .|.++.|++++.+.+++.|+          
T Consensus        11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg----------   78 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG----------   78 (101)
T ss_pred             CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe----------
Confidence            466777778888888877888888888888888888888888888875  56889999999999999986          


Q ss_pred             CCceecCCceeceEECCCcEECCccEEe
Q 024191          132 HGNMLKKPQLLNARIGNHVEIGANSCID  159 (271)
Q Consensus       132 ~~~~~~~~~~~~~~Ig~~~~I~~~~~i~  159 (271)
                                 +++||+++.|++++...
T Consensus        79 -----------~siIg~~v~ig~~~~~~   95 (101)
T cd05635          79 -----------HSYLGSWCNLGAGTNNS   95 (101)
T ss_pred             -----------eeEECCCCEECCCceec
Confidence                       89999999999998664

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.32  E-value=3.2e-11  Score=97.28  Aligned_cols=52  Identities=27%  Similarity=0.471  Sum_probs=43.3

Q ss_pred             EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      .+.+++.||++|||+.++.+.++++||++++|+++++|.++  +++++++++..
T Consensus       125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~P  176 (183)
T PRK10092        125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNP  176 (183)
T ss_pred             eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEecC
Confidence            34567888888888888999999999999999999999986  57787776543

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.32  E-value=2.3e-11  Score=97.21  Aligned_cols=51  Identities=29%  Similarity=0.416  Sum_probs=43.2

Q ss_pred             EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      ...+++.||++|+|+.++.+.++++||++|+||++++|.++  +++++++.+.
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~  164 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN  164 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEcc
Confidence            34577888889999999999999999999999999999985  6777776554

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.30  E-value=3.1e-11  Score=84.39  Aligned_cols=79  Identities=22%  Similarity=0.393  Sum_probs=58.7

Q ss_pred             ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCc
Q 024191           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (271)
Q Consensus        55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~  134 (271)
                      |++++.|++++.|. ++.|++++.|++++.|.+ +.|++++.|++++.+.+++|++++.|++++.+.             
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~-s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-------------   66 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-------------   66 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-------------
Confidence            34556666666664 467777777777777764 667788888888888888888888888888886             


Q ss_pred             eecCCceeceEECCCcEECCcc
Q 024191          135 MLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                              ++++|+++.|++++
T Consensus        67 --------~~ii~~~~~i~~~~   80 (81)
T cd04652          67 --------DCLVGSGYRVEAGT   80 (81)
T ss_pred             --------cCEECCCcEeCCCC
Confidence                    77777777777654

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.30  E-value=7.3e-11  Score=88.57  Aligned_cols=100  Identities=22%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCcee
Q 024191           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNML  136 (271)
Q Consensus        57 ~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~  136 (271)
                      +++.|++++.|+++++|++++.|++++.|.+++.|+++|.|++++.+.+..+.. ..+...+.+.               
T Consensus         3 ~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~~~~~---------------   66 (119)
T cd03358           3 DNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR-SKIYRKWELK---------------   66 (119)
T ss_pred             CCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc-cccccccccC---------------
Confidence            344444444444444444555555555554445555555555544443322211 2222233333               


Q ss_pred             cCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcc
Q 024191          137 KKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH  182 (271)
Q Consensus       137 ~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~  182 (271)
                            .++||+++.|+.++.+..    ++.|++++.++.++.+.+
T Consensus        67 ------~~~Ig~~~~Ig~~~~v~~----~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          67 ------GTTVKRGASIGANATILP----GVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             ------CcEECCCcEECcCCEEeC----CcEECCCCEEccCCEEeC
Confidence                  777888888888777763    466777777776666644

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.30  E-value=3.8e-11  Score=83.74  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=47.1

Q ss_pred             CCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        56 ~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      ++++.|++++.|+++++|++++.|+++|.|. ++.+++++.|++++.+.++++++++.+++++.+.
T Consensus         3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~   67 (80)
T cd05824           3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLE   67 (80)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEe
Confidence            4556666666666667777777777777776 4556777888888877778888888888777775

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.29  E-value=6.3e-11  Score=100.57  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=38.9

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEE
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCV  234 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v  234 (271)
                      +..||++|+|+.++.|.++++||+++.||++++|.++  +++++++.+ ++.+
T Consensus       193 ~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v~G~PArv  243 (273)
T PRK11132        193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARI  243 (273)
T ss_pred             CCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCcEE
Confidence            3567777777777778889999999999999999986  667777654 3343

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.28  E-value=5.1e-11  Score=100.84  Aligned_cols=38  Identities=21%  Similarity=0.523  Sum_probs=33.1

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEEC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  223 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig  223 (271)
                      +.||++|+||.++.|  ++.||++|.||++++|.+++.+-
T Consensus       226 V~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       226 ISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             EEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEE
Confidence            778888888888887  79999999999999999999873

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.27  E-value=1.2e-11  Score=113.02  Aligned_cols=131  Identities=11%  Similarity=0.076  Sum_probs=87.3

Q ss_pred             eeEEeecc----------ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEE---CCCCE-ECcCc
Q 024191            6 FVHYYRLT----------KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI---EVGAI-VHSKA   71 (271)
Q Consensus         6 ~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I---~~~~~-I~~~~   71 (271)
                      .++.|.+.          ++||.|+++++.+++++..++.......+......+.......+++.+   +.++. +..++
T Consensus       249 ~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s  328 (425)
T PRK00725        249 KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINS  328 (425)
T ss_pred             cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeC
Confidence            36677663          269999999999999987776433222222222223332222233322   22221 22367


Q ss_pred             EECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcE
Q 024191           72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVE  151 (271)
Q Consensus        72 ~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~  151 (271)
                      +|+++|.| ++|.|. +++|+++|.|+++|.|.+|+|+++|.|++++.|.                     +++|++++.
T Consensus       329 ~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~---------------------~~ii~~~~~  385 (425)
T PRK00725        329 LVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR---------------------RCVIDRGCV  385 (425)
T ss_pred             EEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe---------------------eEEECCCCE
Confidence            88888888 678876 5778888888888888888888888888888886                     788888887


Q ss_pred             ECCccEEe
Q 024191          152 IGANSCID  159 (271)
Q Consensus       152 I~~~~~i~  159 (271)
                      |++++++.
T Consensus       386 i~~~~~i~  393 (425)
T PRK00725        386 IPEGMVIG  393 (425)
T ss_pred             ECCCCEEC
Confidence            77776554

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.26  E-value=8.2e-11  Score=82.06  Aligned_cols=66  Identities=23%  Similarity=0.464  Sum_probs=51.0

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (271)
Q Consensus        73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (271)
                      |++++.|++++.|++++.|+++|.|++++.|.++.|++++.|++++.|.                     ++++++++.+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~---------------------~sii~~~~~v   60 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVK---------------------SSIVGWNSTV   60 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEe---------------------CCEEeCCCEE
Confidence            3455566666666666667777777778888889999999999999986                     7888888888


Q ss_pred             CCccEEe
Q 024191          153 GANSCID  159 (271)
Q Consensus       153 ~~~~~i~  159 (271)
                      ++++.+.
T Consensus        61 ~~~~~~~   67 (80)
T cd05824          61 GRWTRLE   67 (80)
T ss_pred             CCCcEEe
Confidence            8887775

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.25  E-value=8.7e-11  Score=81.64  Aligned_cols=65  Identities=31%  Similarity=0.525  Sum_probs=41.5

Q ss_pred             ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      |++++.|++++.|.+ +.|++++.|++++.|. ++.|++++.|++++.+.+++|++++.|++++.+.
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~   66 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV   66 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence            344555555555554 6666666666666665 3456666777777777667777777777766665

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02739 serine acetyltransferase

Probab=99.24  E-value=2.6e-10  Score=98.82  Aligned_cols=55  Identities=20%  Similarity=0.247  Sum_probs=41.2

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc-CCcEEeccC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDI  238 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~-~~s~v~~~~  238 (271)
                      +++.||++|+|++++.|.++++||+++.||++++|.++  +++++++. -++.+.+..
T Consensus       256 r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~  311 (355)
T PLN02739        256 RHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFV  311 (355)
T ss_pred             CCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccC
Confidence            34567777777777778889999999999999999986  55666664 455555444

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.22  E-value=1.2e-10  Score=80.89  Aligned_cols=65  Identities=28%  Similarity=0.472  Sum_probs=48.7

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (271)
Q Consensus        73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (271)
                      |++++.|++++.|.+ +.|+++|.|++++.+.++.|++++.|++++.|.                     ++++++++.|
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------------------~svv~~~~~i   59 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIV---------------------DSIIGDNAVI   59 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEE---------------------CCEECCCCEE
Confidence            556666666666665 667777778878778788888888888888885                     6777777777


Q ss_pred             CCccEEe
Q 024191          153 GANSCID  159 (271)
Q Consensus       153 ~~~~~i~  159 (271)
                      ++++.+.
T Consensus        60 ~~~~~i~   66 (79)
T cd03356          60 GENVRVV   66 (79)
T ss_pred             CCCCEEc
Confidence            7776664

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.22  E-value=1.5e-10  Score=80.94  Aligned_cols=77  Identities=30%  Similarity=0.571  Sum_probs=53.6

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (271)
Q Consensus        73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (271)
                      |++++.|++++.|. ++.|++++.|++++.|.+++|++++.|++++.|.                     ++++++++.|
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~---------------------~svi~~~~~i   59 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLE---------------------NCIIGNGAVI   59 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------ccEEeCCCEE
Confidence            45566666666665 4667777777777777778888888888888885                     7788888888


Q ss_pred             CCccEEeCCCcCCeEECCCcEECC
Q 024191          153 GANSCIDRGSWRDTVIGDHSKIDN  176 (271)
Q Consensus       153 ~~~~~i~~~~~~~~~ig~~~~i~~  176 (271)
                      ++++.+.     ++.+++++.+++
T Consensus        60 ~~~~~v~-----~~ii~~~~~i~~   78 (81)
T cd04652          60 GEKCKLK-----DCLVGSGYRVEA   78 (81)
T ss_pred             CCCCEEc-----cCEECCCcEeCC
Confidence            8777663     344444444443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.22  E-value=1.4e-10  Score=80.44  Aligned_cols=65  Identities=25%  Similarity=0.389  Sum_probs=40.8

Q ss_pred             ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      |+++++|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.|.++.|++++.|++++.+.
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~   66 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP   66 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence            34555555555554 45666666666666665 4556666666666666666666666666666665

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.20  E-value=3.1e-10  Score=83.67  Aligned_cols=50  Identities=20%  Similarity=0.291  Sum_probs=42.2

Q ss_pred             EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      .+..++.||++|+++.++.+.++++||++|.|+++++|.++  +++++++.+
T Consensus        52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G  101 (107)
T cd05825          52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAG  101 (107)
T ss_pred             eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc--CCCCCEEEC
Confidence            34577899999999999999999999999999999999885  456666654

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.20  E-value=3e-10  Score=90.01  Aligned_cols=88  Identities=23%  Similarity=0.363  Sum_probs=55.7

Q ss_pred             cCcEECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           51 QSACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      .++.|.++++|++++.|..  +++|++++.||++|.|.+++.|+... ..  .....++||++|.|++++.|..      
T Consensus        60 ~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~-~~--~~~~~~~Ig~~v~Ig~~a~I~~------  130 (162)
T TIGR01172        60 TGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTG-KE--KGKRHPTVGEGVMIGAGAKVLG------  130 (162)
T ss_pred             eCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCc-cc--cCCcCCEECCCcEEcCCCEEEC------
Confidence            3444555555555555543  24555555555555555555554321 11  1134578999999999998873      


Q ss_pred             EccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (271)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~  161 (271)
                                    .+.||+++.|++++.+...
T Consensus       131 --------------~v~IG~~~~Iga~s~V~~d  149 (162)
T TIGR01172       131 --------------NIEVGENAKIGANSVVLKD  149 (162)
T ss_pred             --------------CcEECCCCEECCCCEECCC
Confidence                          7899999999999999853

Cysteine biosynthesis

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.18  E-value=2.2e-10  Score=79.45  Aligned_cols=65  Identities=31%  Similarity=0.515  Sum_probs=42.7

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (271)
Q Consensus        73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (271)
                      |++++.|++++.|. ++.|++++.|++++.|.++.|++++.|++++.|.                     +++|++++.|
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~---------------------~~~i~~~~~i   59 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH---------------------HSIVADGAVI   59 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------CcEEcCCCEE
Confidence            45566666666665 4566777777777777777777777777777775                     5666666666


Q ss_pred             CCccEEe
Q 024191          153 GANSCID  159 (271)
Q Consensus       153 ~~~~~i~  159 (271)
                      ++++.+.
T Consensus        60 ~~~~~i~   66 (79)
T cd05787          60 GKGCTIP   66 (79)
T ss_pred             CCCCEEC
Confidence            6555443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PLN02694 serine O-acetyltransferase

Probab=99.18  E-value=3.3e-10  Score=96.36  Aligned_cols=84  Identities=29%  Similarity=0.399  Sum_probs=51.3

Q ss_pred             cEECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEc
Q 024191           53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD  130 (271)
Q Consensus        53 ~~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~  130 (271)
                      +.|++.+.||+++.|..  +++||+++.||++|.|..++++|..   +..+..++++||++|.|++++.|..        
T Consensus       161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilg--------  229 (294)
T PLN02694        161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILG--------  229 (294)
T ss_pred             EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECC--------
Confidence            34555555555555543  4566666666666665555555432   2333445677888888888877752        


Q ss_pred             cCCceecCCceeceEECCCcEECCccEEe
Q 024191          131 EHGNMLKKPQLLNARIGNHVEIGANSCID  159 (271)
Q Consensus       131 ~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~  159 (271)
                                  ++.||+++.|++++++.
T Consensus       230 ------------gi~IGd~a~IGAgSVV~  246 (294)
T PLN02694        230 ------------NVKIGEGAKIGAGSVVL  246 (294)
T ss_pred             ------------CCEECCCCEECCCCEEC
Confidence                        67777777777777665

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.15  E-value=4.3e-10  Score=82.45  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             cEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecC
Q 024191           59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  138 (271)
Q Consensus        59 ~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~  138 (271)
                      +.|++++.|. ++.||+++.|+ ++.|. ++.|++++.|++++.|.++.|++++.|++++.+.                 
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-----------------   61 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-----------------   61 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-----------------
Confidence            4566666663 56777777777 77776 5667788888888888888888888888888885                 


Q ss_pred             CceeceEECCCcEECCccEEeCC
Q 024191          139 PQLLNARIGNHVEIGANSCIDRG  161 (271)
Q Consensus       139 ~~~~~~~Ig~~~~I~~~~~i~~~  161 (271)
                          +++||+++.|++++.+...
T Consensus        62 ----~siig~~~~Ig~~~~v~~~   80 (104)
T cd04651          62 ----RAIIDKNVVIPDGVVIGGD   80 (104)
T ss_pred             ----eEEECCCCEECCCCEECCC
Confidence                7888888888888777643

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.13  E-value=1e-09  Score=98.87  Aligned_cols=132  Identities=24%  Similarity=0.310  Sum_probs=92.0

Q ss_pred             EEeeccccHHHHHHHHhhhccCCCCC--ch---hhhhhcccCCCcEEccCcEECCCcEECCCCEECc---CcEECCCcEE
Q 024191            8 HYYRLTKTYKQDFGRFCNLFSTKSDI--ES---RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHS---KAVLGANVCI   79 (271)
Q Consensus         8 ~~~~~~~~~w~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~v~I   79 (271)
                      +++++ ..++..+.....++......  ..   ...........+.|++++.+ .++.|+++|.|++   +++|+++|.|
T Consensus       240 ~w~di-gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I  317 (380)
T PRK05293        240 YWKDV-GTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQV  317 (380)
T ss_pred             EEEeC-CCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEE
Confidence            45666 55555555444555433221  11   01111223345667777777 4567888888763   5789999999


Q ss_pred             CCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEE
Q 024191           80 GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI  158 (271)
Q Consensus        80 g~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i  158 (271)
                      +++|.|. +++|++++.|+++|.|.+++|++++.|++++.+.....                ...+||+++.+...++|
T Consensus       318 ~~~~~i~-~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~----------------~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        318 GEGSVVK-DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKE----------------VITVIGENEVIGVGTVI  379 (380)
T ss_pred             CCCCEEE-CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCc----------------eeEEEeCCCCCCCCcEe
Confidence            9999997 66789999999999999999999999999999975331                13889999988887765

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.6e-09  Score=96.55  Aligned_cols=106  Identities=19%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             EEeeccccHHHHHHHHhhhccCCCCC-chhhhhh-cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191            8 HYYRLTKTYKQDFGRFCNLFSTKSDI-ESRQQFQ-KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV   85 (271)
Q Consensus         8 ~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I   85 (271)
                      +|+.. ..+|........++...... ....... ..... +.+..++++++++.|++++.|+++++||++|.|++++.|
T Consensus       217 ~W~di-g~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i  294 (358)
T COG1208         217 YWLDI-GTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI  294 (358)
T ss_pred             eEEeC-CCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEE
Confidence            56677 77777766666666433222 1111100 00333 667778888888888888888888888888888888888


Q ss_pred             CCCcEECCCCEECCccEEcceEECCCcEECC
Q 024191           86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHN  116 (271)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~  116 (271)
                      . ++.|.++|.|++++.|.+|+|+++|.|++
T Consensus       295 ~-~Sii~~~~~i~~~~~i~~sIi~~~~~ig~  324 (358)
T COG1208         295 K-NSIIMDNVVIGHGSYIGDSIIGENCKIGA  324 (358)
T ss_pred             E-eeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence            7 45577889999999999999999998888

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.12  E-value=6.9e-10  Score=101.72  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=28.3

Q ss_pred             EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc-EEe
Q 024191          185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS-CVF  235 (271)
Q Consensus       185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s-~v~  235 (271)
                      .|++++.+. ++.+..++.||+++.|+...-+.+..++|+++.++++. ++.
T Consensus       375 ~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~  425 (436)
T PLN02241        375 GIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVIL  425 (436)
T ss_pred             EECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEc
Confidence            344444443 34445555566666666555556666666677777763 443

>PRK10191 putative acyl transferase; Provisional

Probab=99.10  E-value=1.5e-09  Score=84.16  Aligned_cols=87  Identities=26%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCce
Q 024191           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG  126 (271)
Q Consensus        47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~  126 (271)
                      ..|.+++.+++++.|+++    .++.|++++.||++|.|+.++.||+.....    ...+.||+++.|++++.+..    
T Consensus        42 ~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~----~~~~~IGd~~~Ig~~~~I~~----  109 (146)
T PRK10191         42 YEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGADN----MACPHIGNGVELGANVIILG----  109 (146)
T ss_pred             cccCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCcCC----CCCCEECCCcEEcCCCEEeC----
Confidence            335555566666555553    134555555555555554444444332111    13457888888888888863    


Q ss_pred             eEEccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191          127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (271)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~  161 (271)
                                      ++.||+++.|++++.+...
T Consensus       110 ----------------~v~IG~~~~Igags~V~~d  128 (146)
T PRK10191        110 ----------------DITIGNNVTVGAGSVVLDS  128 (146)
T ss_pred             ----------------CCEECCCCEECCCCEECCc
Confidence                            7888888888888888743

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.10  E-value=3e-10  Score=84.93  Aligned_cols=19  Identities=26%  Similarity=0.510  Sum_probs=12.2

Q ss_pred             eceEECCCcEECCccEEeC
Q 024191          142 LNARIGNHVEIGANSCIDR  160 (271)
Q Consensus       142 ~~~~Ig~~~~I~~~~~i~~  160 (271)
                      .+.-||++++|++.+++.+
T Consensus        83 fp~hiGdhVFieE~cVVnA  101 (184)
T KOG3121|consen   83 FPVHIGDHVFIEEECVVNA  101 (184)
T ss_pred             eeeeecceEEEecceEeeh
Confidence            3666777777776666653

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.08  E-value=1.8e-09  Score=78.68  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=63.0

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEEC---CCcEECCCCEECCccEEcceEECCCcEECCC
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSNCIIGDSCIIHNG  117 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~---~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~  117 (271)
                      .++...+.|.+++.+.+++.|++++.|++++.|.+++.||++|.|+   +++.|.+++.+++++.|.+++|++++.|+++
T Consensus        12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~   91 (101)
T cd05635          12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAG   91 (101)
T ss_pred             EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEEeeeEECCCCEECCC
Confidence            4555666777777777777777777777777777777777777776   5677778888888888888999999999988


Q ss_pred             CEEC
Q 024191          118 VCIG  121 (271)
Q Consensus       118 ~~i~  121 (271)
                      +...
T Consensus        92 ~~~~   95 (101)
T cd05635          92 TNNS   95 (101)
T ss_pred             ceec
Confidence            8765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.07  E-value=3.2e-09  Score=77.39  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=37.3

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      ..++.|+++++++.++.+..+++|+++++|+++++|.++  ++++++..+
T Consensus        52 ~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~G   99 (101)
T cd03354          52 KRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD--VPANSTVVG   99 (101)
T ss_pred             CCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc--cCCCCEEEe
Confidence            356677777777777777888999999999999999875  666666553

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.07  E-value=1.7e-09  Score=79.31  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=52.9

Q ss_pred             cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191           77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus        77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                      +.|++++.|. ++.||++|.|+ ++.|.++.|++++.|++++.|.                     +++|++++.|+.++
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~---------------------~siI~~~~~Ig~~~   58 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVE---------------------DSVIMPNVGIGRNA   58 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEE---------------------EeEEcCCCEECCCC
Confidence            4556666664 46677777777 7777888888888888888886                     78888888888777


Q ss_pred             EEeCCCcCCeEECCCcEECCCcEE
Q 024191          157 CIDRGSWRDTVIGDHSKIDNLVQI  180 (271)
Q Consensus       157 ~i~~~~~~~~~ig~~~~i~~~~~i  180 (271)
                      .+.     ++.|++++.+++++.+
T Consensus        59 ~i~-----~siig~~~~Ig~~~~v   77 (104)
T cd04651          59 VIR-----RAIIDKNVVIPDGVVI   77 (104)
T ss_pred             EEE-----eEEECCCCEECCCCEE
Confidence            763     3455554444444444

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.06  E-value=1.2e-09  Score=75.25  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=30.3

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV  234 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v  234 (271)
                      .++.||++++++.++++.++++|++++.|++++.+
T Consensus        43 ~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v   77 (78)
T cd00208          43 NPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV   77 (78)
T ss_pred             CCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence            34889999999999999889999999999988876

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.04  E-value=2.1e-09  Score=74.06  Aligned_cols=32  Identities=41%  Similarity=0.670  Sum_probs=14.9

Q ss_pred             ECCCcEECCCCEECcCcEECCCcEECCCCEEC
Q 024191           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG   86 (271)
Q Consensus        55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~   86 (271)
                      |++++.|+++++|.+++.||+++.|++++.|.
T Consensus         3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~   34 (78)
T cd00208           3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIG   34 (78)
T ss_pred             ECCCeEECCCCEEeCcEEECCCCEECCCCEEE
Confidence            34444444444444444444444444444444

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=7.4e-10  Score=96.00  Aligned_cols=83  Identities=29%  Similarity=0.511  Sum_probs=62.6

Q ss_pred             ECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEE
Q 024191           67 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARI  146 (271)
Q Consensus        67 I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I  146 (271)
                      ++..+.+++++.|++++.|. .++||.+|.||+.+.|.+|.|.++++|++++.|.                     +++|
T Consensus       331 ~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ie---------------------nsII  388 (433)
T KOG1462|consen  331 VGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIE---------------------NSII  388 (433)
T ss_pred             cchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCccee---------------------ccee
Confidence            33445555666666666665 4568888888999999999999999999999997                     8899


Q ss_pred             CCCcEECCccEEeCCCcCCeEECCCcEECC
Q 024191          147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDN  176 (271)
Q Consensus       147 g~~~~I~~~~~i~~~~~~~~~ig~~~~i~~  176 (271)
                      |.+++|+.++.+.     +|.||.+-.+++
T Consensus       389 g~gA~Ig~gs~L~-----nC~Ig~~yvVea  413 (433)
T KOG1462|consen  389 GMGAQIGSGSKLK-----NCIIGPGYVVEA  413 (433)
T ss_pred             cccceecCCCeee-----eeEecCCcEEcc
Confidence            9999999888873     566666655554

>PLN02357 serine acetyltransferase

Probab=98.99  E-value=3.2e-09  Score=92.83  Aligned_cols=86  Identities=28%  Similarity=0.431  Sum_probs=56.4

Q ss_pred             cEECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEc
Q 024191           53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD  130 (271)
Q Consensus        53 ~~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~  130 (271)
                      +.|++++.||+++.|..  +++||+++.||++|.|..+++||..   +.......++||++|.|++++.|..        
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~Ilg--------  295 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILG--------  295 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEEC--------
Confidence            44555555555555543  4566666666666666666666442   1111134678999999999988852        


Q ss_pred             cCCceecCCceeceEECCCcEECCccEEeCC
Q 024191          131 EHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (271)
Q Consensus       131 ~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~  161 (271)
                                  ++.||+++.|++++++...
T Consensus       296 ------------gV~IGdga~IGAgSVV~~d  314 (360)
T PLN02357        296 ------------NITIGEGAKIGAGSVVLKD  314 (360)
T ss_pred             ------------CeEECCCCEECCCCEECcc
Confidence                        8899999999999988854

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.98  E-value=8.3e-09  Score=80.18  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=43.1

Q ss_pred             EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      ...++.||++|+|+.++.+..+++||++|+|+++++|.++  +++++++++.
T Consensus        70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~  119 (145)
T cd03349          70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGN  119 (145)
T ss_pred             ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEec
Confidence            3467899999999999999999999999999999999986  6788777654

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.98  E-value=9.2e-09  Score=75.75  Aligned_cols=49  Identities=22%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      ...++.|+++++++.++.+..++.|+++++++.++.|.+  .+++++++++
T Consensus        55 ~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~g  103 (109)
T cd04647          55 TSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVAG  103 (109)
T ss_pred             ccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee--ECCCCCEEEc
Confidence            346677777777777777778888899999998888884  5667776644

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.98  E-value=5.3e-09  Score=93.35  Aligned_cols=50  Identities=26%  Similarity=0.389  Sum_probs=24.0

Q ss_pred             cEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      +.+.+.+.|+++|.| .++.|.+.+.|+++|.|.+++|++++.|+++|.|+
T Consensus       249 ~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~  298 (353)
T TIGR01208       249 SKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR  298 (353)
T ss_pred             CEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEe
Confidence            334444444444444 33344444455555555455555555555555553

Alternate name: dTDP-D-glucose synthase

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.98  E-value=6.1e-09  Score=82.79  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  235 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~  235 (271)
                      ..+-+||+++.|++++.+.+++.|||++.||++++|.+++.- +-++++-++.+.
T Consensus       117 ~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~-~~tvvGvPArii  170 (194)
T COG1045         117 KRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPP-NATVVGVPARVI  170 (194)
T ss_pred             CCCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCC-CceEecCcceEe
Confidence            356788888889999999999999999999999999998775 555666666554

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.94  E-value=3.7e-09  Score=79.79  Aligned_cols=169  Identities=16%  Similarity=0.179  Sum_probs=85.6

Q ss_pred             cEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecC
Q 024191           59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  138 (271)
Q Consensus        59 ~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~  138 (271)
                      ++|.+.+++-..+.|.+++.|+++|++.+.+++-..  -      ...+||+++.|.+.+.|...-     ..+-.+...
T Consensus         9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~--a------GPI~iGEnniiEEyA~i~n~~-----~~~~~~d~~   75 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIAT--A------GPIYIGENNIIEEYAVIRNRL-----EPGAVWDSD   75 (190)
T ss_pred             eeecCceEEEEecccccceEecCCcEecceEEEEcc--c------CCEEEccCchhhhHHHHHhhc-----CCCCccCCC
Confidence            455555555445566667777777777766544211  1      235677777777766664210     000011110


Q ss_pred             CceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECC
Q 024191          139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD  218 (271)
Q Consensus       139 ~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~  218 (271)
                        ....+||.+..+.-+|                      .. .-..+|+..+++..+.++.++.+-++|.||+.+.+..
T Consensus        76 --~~pmiIGt~NvFeVgc----------------------~s-~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~  130 (190)
T KOG4042|consen   76 --GQPMIIGTWNVFEVGC----------------------KS-SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS  130 (190)
T ss_pred             --CCeEEEeccceEEeec----------------------hh-hhhhhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence              0134444444433333                      22 2234444455555555555666666666777777766


Q ss_pred             CCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhhccccc
Q 024191          219 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKK  268 (271)
Q Consensus       219 ~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r~~~~  268 (271)
                      .-.++.++.+-+..-+.+.-...-   +.....+..+++-+.+..+|.|+
T Consensus       131 ~q~lpent~vYga~~L~R~~~~~~---~~qtlQidFLrKiLPnYHHL~k~  177 (190)
T KOG4042|consen  131 HQNLPENTSVYGATNLSRTTKTPN---MTQTLQIDFLRKILPNYHHLYKK  177 (190)
T ss_pred             ccccCCcceEEccccccceecCCC---CCccchHHHHHHHccchhhhhcc
Confidence            667777776666555543221000   11123355566766666666655

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.90  E-value=2.7e-08  Score=90.51  Aligned_cols=111  Identities=23%  Similarity=0.350  Sum_probs=80.6

Q ss_pred             EEeeccccHHHHHHHHhhhccCCCC--Cchhh----------hhhcccCCC--cEEccCcEECCCcEECCCCEECcCcEE
Q 024191            8 HYYRLTKTYKQDFGRFCNLFSTKSD--IESRQ----------QFQKWHNGG--GIFHQSACIDSTVLIEVGAIVHSKAVL   73 (271)
Q Consensus         8 ~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~--~~i~~~~~i~~~~~I~~~~~I~~~~~I   73 (271)
                      +++++ ..+|..+....++|+....  +....          +........  ..+.+++.|++++.|+ ++.|. +++|
T Consensus       258 ~w~Di-gt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svI  334 (407)
T PRK00844        258 YWRDV-GTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVL  334 (407)
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEE
Confidence            35677 8888888877777754322  11100          001111111  1134567788888887 78886 5899


Q ss_pred             CCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECC
Q 024191           74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (271)
Q Consensus        74 g~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~  122 (271)
                      +++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|+++++++.
T Consensus       335 g~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        335 SPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             CCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            9999999999998 56799999999999999999999999999999975

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.87  E-value=2.9e-08  Score=80.65  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=44.8

Q ss_pred             EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEec
Q 024191          180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFK  236 (271)
Q Consensus       180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~  236 (271)
                      ...++.||+++||+.++.+.++++||++++||+++++.+  -+++++++++. +.+.|
T Consensus       121 ~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk--dvp~~~iv~G~Pa~vir  176 (190)
T COG0110         121 GAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK--DVPPYGIVAGNPARVIR  176 (190)
T ss_pred             ecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC--ccCCCeEEeCCcceEEE
Confidence            346799999999999999999999999999999999999  45566666554 33543

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.81  E-value=2.5e-08  Score=82.96  Aligned_cols=112  Identities=25%  Similarity=0.369  Sum_probs=61.3

Q ss_pred             CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCc
Q 024191           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF  125 (271)
Q Consensus        46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~  125 (271)
                      +.+|.|++.++..+.|++++++.+.++|.=++.++++|+|...+.+|..           .+||++|+|+.++.|+    
T Consensus       108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~-----------a~VGkn~higgGa~I~----  172 (271)
T COG2171         108 GVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSC-----------AQVGKNSHIGGGASIG----  172 (271)
T ss_pred             ceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeecc-----------EEECCCcccCCcceEe----
Confidence            3555555555555555555555555555555555555555544444432           4567777777777775    


Q ss_pred             eeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191          126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  184 (271)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~  184 (271)
                              .+...++...++||++|.||+++.+..    .+.+|++|.+.+++.|+.++
T Consensus       173 --------GVLep~~a~Pv~IgdncliGAns~~ve----GV~vGdg~VV~aGv~I~~~t  219 (271)
T COG2171         173 --------GVLEPLQANPVIIGDNCLIGANSEVVE----GVIVGDGCVVAAGVFITQDT  219 (271)
T ss_pred             --------EEecCCCCCCeEECCccEeccccceEe----eeEeCCCcEEecceEEeCCc
Confidence                    233333444777777777777765542    24444444444444443333

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.79  E-value=7.9e-08  Score=86.03  Aligned_cols=111  Identities=25%  Similarity=0.384  Sum_probs=74.9

Q ss_pred             EEeeccccHHHHHHHHhhhccCCCCCc--hhh----hhhcccCCCcEEccCcEECCCcEECCCCEECc----CcEECCCc
Q 024191            8 HYYRLTKTYKQDFGRFCNLFSTKSDIE--SRQ----QFQKWHNGGGIFHQSACIDSTVLIEVGAIVHS----KAVLGANV   77 (271)
Q Consensus         8 ~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~v   77 (271)
                      +++++ ..++..+....++++......  ...    .......+++.+++.+.+ +++.|+++|.|++    ++.|+++|
T Consensus       240 ~w~di-gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~  317 (361)
T TIGR02091       240 YWRDV-GTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRV  317 (361)
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCCEEEccEECCCC
Confidence            45666 555555555555555432211  100    011223344555665543 4466777777776    78888888


Q ss_pred             EECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           78 CIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        78 ~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      .|+++|.|. ++.|++++.|++++.+.+++|++++.|++++.|+
T Consensus       318 ~I~~~~~i~-~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       318 RIGSGSTVE-DSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             EECCCCEEe-eeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence            998888887 6778899999999999999999999999998875

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2.9e-08  Score=83.51  Aligned_cols=69  Identities=23%  Similarity=0.359  Sum_probs=46.4

Q ss_pred             cEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCc
Q 024191           71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV  150 (271)
Q Consensus        71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~  150 (271)
                      ++|.+.+.+.+.+.|++|+.||.++.||+++.+.+|+|-+++.|.+++.+-                     +++||-.+
T Consensus       289 VyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---------------------~sIigw~s  347 (407)
T KOG1460|consen  289 VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---------------------HSIIGWKS  347 (407)
T ss_pred             eEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEE---------------------eeeecccc
Confidence            333333444444444444455555566666666778899999999988774                     88899888


Q ss_pred             EECCccEEeC
Q 024191          151 EIGANSCIDR  160 (271)
Q Consensus       151 ~I~~~~~i~~  160 (271)
                      .||.-+.+..
T Consensus       348 ~iGrWaRVe~  357 (407)
T KOG1460|consen  348 SIGRWARVEG  357 (407)
T ss_pred             cccceeeecc
Confidence            8888777754

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=2.4e-08  Score=86.73  Aligned_cols=84  Identities=26%  Similarity=0.482  Sum_probs=61.8

Q ss_pred             CEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCC
Q 024191           83 TVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (271)
Q Consensus        83 ~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~  162 (271)
                      ..++..+.++++|.|++++.|..|+||.+|.||+.++|.                     ++++-+++.|++++.|.   
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~---------------------nSilm~nV~vg~G~~Ie---  384 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVA---------------------NSILMDNVVVGDGVNIE---  384 (433)
T ss_pred             eccchhhccCCCceecccceeeeeeecCCccccCCcEEE---------------------eeEeecCcEecCCccee---
Confidence            344455667777777778888888888888888888886                     88888888888888884   


Q ss_pred             cCCeEECCCcEECCCcEEccccEECCCCEEc
Q 024191          163 WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLC  193 (271)
Q Consensus       163 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~  193 (271)
                        +|.||.+++|+.++.+ .+|.||.+-++.
T Consensus       385 --nsIIg~gA~Ig~gs~L-~nC~Ig~~yvVe  412 (433)
T KOG1462|consen  385 --NSIIGMGAQIGSGSKL-KNCIIGPGYVVE  412 (433)
T ss_pred             --cceecccceecCCCee-eeeEecCCcEEc
Confidence              5677777777776666 556666555554

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.78  E-value=4.8e-08  Score=89.42  Aligned_cols=38  Identities=18%  Similarity=0.306  Sum_probs=29.6

Q ss_pred             CCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           82 GTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        82 ~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      ++.|. ++.|+++|.| +++.|.+|+|+++|.|++++.|.
T Consensus       303 ~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~  340 (429)
T PRK02862        303 DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIE  340 (429)
T ss_pred             ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEE
Confidence            45554 4677888877 77778788999999999999886

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.73  E-value=2.2e-07  Score=84.95  Aligned_cols=70  Identities=29%  Similarity=0.519  Sum_probs=60.4

Q ss_pred             cCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191           51 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~  123 (271)
                      .++.|++++.| ++|.|. +++|+++|.|+++|.|. +++|+++|.|+++|.|.+|+|++++.|++++.|+..
T Consensus       326 ~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~  395 (425)
T PRK00725        326 INSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGED  395 (425)
T ss_pred             EeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCC
Confidence            36778888888 677775 68999999999999996 677999999999999999999999999999999743

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.63  E-value=6.4e-08  Score=82.62  Aligned_cols=104  Identities=21%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      +++.+.+...+..+.++..|..+      ..+.+-+.+|++|.|+++++||.++.|++++.+.+|.|-.+..++.++.+.
T Consensus       242 ~Yl~s~~~~t~~r~~p~~~i~~n------vlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~  315 (371)
T KOG1322|consen  242 FYLRSLPKYTSPRLLPGSKIVGN------VLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEIS  315 (371)
T ss_pred             HHHhhCcccCCccccCCcccccc------EeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHH
Confidence            33444445555555555544444      444444555566677777777777888888888888888888888888886


Q ss_pred             CCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECC
Q 024191          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN  176 (271)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~  176 (271)
                                           .+++|-++.||.++.+.    +.++||+++++.+
T Consensus       316 ---------------------s~ivg~~~~IG~~~~id----~~a~lG~nV~V~d  345 (371)
T KOG1322|consen  316 ---------------------SSIVGWNVPIGIWARID----KNAVLGKNVIVAD  345 (371)
T ss_pred             ---------------------hhhccccccccCceEEe----cccEeccceEEec
Confidence                                 67777777777666555    3455555555544

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.60  E-value=1e-07  Score=71.50  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcE
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC  233 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~  233 (271)
                      +..||+++.|+..+.+ ....||..+.+|.++.|+.++++-|-|.|..++++.+.+.+++++.+++...
T Consensus        84 p~hiGdhVFieE~cVV-nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~  151 (184)
T KOG3121|consen   84 PVHIGDHVFIEEECVV-NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPA  151 (184)
T ss_pred             eeeecceEEEecceEe-ehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCc
Confidence            3445555555555444 3344444444444444555566777777778888888888888888877643

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.58  E-value=2e-07  Score=75.41  Aligned_cols=52  Identities=19%  Similarity=0.300  Sum_probs=41.8

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE-EcCCcEEec
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFK  236 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~-i~~~s~v~~  236 (271)
                      +-.||++++|+.++.|.+++.||+++.|+++++|.+++.  +++. +|.++.+.+
T Consensus       200 hP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP--~~~~AvGnPAklIg  252 (269)
T KOG4750|consen  200 HPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVP--PNTLAVGNPAKLIG  252 (269)
T ss_pred             CCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccC--CCceecCCchhhcc
Confidence            349999999999999999999999999999999999765  4444 444444443

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.56  E-value=2.7e-07  Score=69.81  Aligned_cols=132  Identities=19%  Similarity=0.242  Sum_probs=85.9

Q ss_pred             ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191           91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  169 (271)
Q Consensus        91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig  169 (271)
                      |.+.+.+-.-+.| .+.+|+++|.+.+.+++-+.                 .+..+||+++.|.+++.|...      +-
T Consensus        11 Iap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~-----------------aGPI~iGEnniiEEyA~i~n~------~~   67 (190)
T KOG4042|consen   11 IAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIAT-----------------AGPIYIGENNIIEEYAVIRNR------LE   67 (190)
T ss_pred             ecCceEEEEecccccceEecCCcEecceEEEEcc-----------------cCCEEEccCchhhhHHHHHhh------cC
Confidence            3333333333334 56667777777766665432                 258888888888888877521      11


Q ss_pred             CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcC
Q 024191          170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGF  247 (271)
Q Consensus       170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~  247 (271)
                      ++..-...   +....||.+.++.-++.... ..+||+-+|+..+.+++++.+.++|.+|++..+.  +.+|+++.++|.
T Consensus        68 ~~~~~d~~---~~pmiIGt~NvFeVgc~s~A-~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga  143 (190)
T KOG4042|consen   68 PGAVWDSD---GQPMIIGTWNVFEVGCKSSA-KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGA  143 (190)
T ss_pred             CCCccCCC---CCeEEEeccceEEeechhhh-hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEcc
Confidence            11111111   13456777766655554433 6789999999999999999999999999998876  578999988775


Q ss_pred             CC
Q 024191          248 PA  249 (271)
Q Consensus       248 p~  249 (271)
                      -.
T Consensus       144 ~~  145 (190)
T KOG4042|consen  144 TN  145 (190)
T ss_pred             cc
Confidence            43

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.51  E-value=5.6e-07  Score=80.82  Aligned_cols=61  Identities=15%  Similarity=0.185  Sum_probs=41.8

Q ss_pred             CCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECC
Q 024191           75 ANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  154 (271)
Q Consensus        75 ~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~  154 (271)
                      +.+.|+++|.| .++.||++|.|+  +.+.+|+|+++|.|+++|.|.                     +++|++++.|++
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~---------------------~sii~~~~~I~~  332 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIK---------------------NCIIMQRTVIGE  332 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEE---------------------eeEEeCCCEECC
Confidence            44555555555 355666777775  346777888888888888875                     777777777777


Q ss_pred             ccEEe
Q 024191          155 NSCID  159 (271)
Q Consensus       155 ~~~i~  159 (271)
                      ++.+.
T Consensus       333 ~~~i~  337 (369)
T TIGR02092       333 GAHLE  337 (369)
T ss_pred             CCEEE
Confidence            77663

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=6.9e-06  Score=72.51  Aligned_cols=60  Identities=20%  Similarity=0.204  Sum_probs=36.6

Q ss_pred             CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191           76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN  155 (271)
Q Consensus        76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~  155 (271)
                      .+.+.+.+.+. ++.++++|.|..  .|.+|+|+.+++|+.++.|.                     +|+|-.+|.||.+
T Consensus       285 Pak~~~~s~v~-nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~---------------------~svim~~~~IG~~  340 (393)
T COG0448         285 PAKFVNDSEVS-NSLVAGGCIISG--TVENSVLFRGVRIGKGSVIE---------------------NSVIMPDVEIGEG  340 (393)
T ss_pred             CceEecCceEe-eeeeeCCeEEEe--EEEeeEEecCeEECCCCEEE---------------------eeEEeCCcEECCC
Confidence            33333333333 445555565544  56677777777777777775                     6777777777777


Q ss_pred             cEEe
Q 024191          156 SCID  159 (271)
Q Consensus       156 ~~i~  159 (271)
                      |++.
T Consensus       341 ~~l~  344 (393)
T COG0448         341 AVLR  344 (393)
T ss_pred             CEEE
Confidence            7664

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.23  E-value=2.2e-06  Score=49.11  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  236 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~  236 (271)
                      +++||++|+|++++.|  +++||+++.|++++.+.+
T Consensus         1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred             CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence            3567777777777777  578888888888777653

...

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.17  E-value=1.3e-05  Score=65.32  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHH
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVA  260 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~  260 (271)
                      +.++.|+.+|.+.+++...+.+.||+.+.|.+..++..+..+|+++.|..+-.-     .+.+...+|-..+..+-.+..
T Consensus        54 a~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva-----~g~Ivirnpvpvl~fl~lyl~  128 (277)
T COG4801          54 AKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVA-----KGWIVIRNPVPVLEFLFLYLS  128 (277)
T ss_pred             ecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeee-----cceEEEcCCccEEEEEhhHHH
Confidence            355666666666666666677778888888888888888888888888766322     233344566666555555555


Q ss_pred             Hhhccc
Q 024191          261 NQIRSS  266 (271)
Q Consensus       261 ~~~r~~  266 (271)
                      .+-||.
T Consensus       129 vllrlG  134 (277)
T COG4801         129 VLLRLG  134 (277)
T ss_pred             HHHhcc
Confidence            555444

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.03  E-value=0.00016  Score=59.15  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=14.6

Q ss_pred             CCcEECCCCEECCCcEECCCCEECCccEE
Q 024191           75 ANVCIGSGTVVGPAVTIGQSTNIGFNVAL  103 (271)
Q Consensus        75 ~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I  103 (271)
                      .+++|+.+|.+..|+....+++||+++.|
T Consensus        55 ~diridmw~kv~gNV~ve~dayiGE~~sI   83 (277)
T COG4801          55 KDIRIDMWCKVTGNVIVENDAYIGEFSSI   83 (277)
T ss_pred             cceeeeeeeEeeccEEEcCceEEecccee
Confidence            44555555555555545455555555444

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.95  E-value=8.7e-06  Score=47.26  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcCCcEEe
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  235 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~  235 (271)
                      +.||++++|+.++.|.+++.|++++.|++++.+.
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence            4555555555555555555555555555555543

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.85  E-value=2e-05  Score=45.04  Aligned_cols=32  Identities=38%  Similarity=0.672  Sum_probs=17.6

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEEC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR  217 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~  217 (271)
                      +.||++|+|+.++.+  ++.|||+|.|+++++|.
T Consensus         2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEE
T ss_pred             eEECCCEEECccccc--CCEEcCCCEECCCCEEc
Confidence            345555555555555  47788888888777764

...

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.79  E-value=2.2e-05  Score=45.56  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=17.9

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEE
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV  216 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i  216 (271)
                      +.|+++++|++++.+.+++.||+++.|+++++|
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            345555555555555555666666666655555

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=88.67  E-value=0.73  Score=42.17  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=15.6

Q ss_pred             cEECCCcEECCCCEECCCcEECCCCEECCccEEcce
Q 024191           71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC  106 (271)
Q Consensus        71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~  106 (271)
                      +.|..++.++++++|+ ++.|+.++.||++|+|.++
T Consensus       285 Sil~~~~~vg~~svIe-~s~l~~~~~IG~~cIisGv  319 (414)
T PF07959_consen  285 SILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIISGV  319 (414)
T ss_pred             eEecCCceECCCCEEE-eeecCCCCEECCCCEEECC
Confidence            4444444444444443 3344444444444444333

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=88.09  E-value=1.6  Score=39.94  Aligned_cols=42  Identities=21%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             ECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEe
Q 024191           97 IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID  159 (271)
Q Consensus        97 Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~  159 (271)
                      +...+.|-+|+|..++.++++++|.                     ++.++.++.||.++.|.
T Consensus       276 ~~~~~~VinSil~~~~~vg~~svIe---------------------~s~l~~~~~IG~~cIis  317 (414)
T PF07959_consen  276 SEASSCVINSILEGGVSVGPGSVIE---------------------HSHLGGPWSIGSNCIIS  317 (414)
T ss_pred             cCCCeeEEEeEecCCceECCCCEEE---------------------eeecCCCCEECCCCEEE
Confidence            4444555566666666666666665                     56666666666666553

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=83.07  E-value=0.072  Score=45.20  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=23.2

Q ss_pred             eeeEEeeccccHHHHHHHHhhhccCCCCCch
Q 024191            5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIES   35 (271)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~   35 (271)
                      +.+.+... .|+|.|.+++.++++++..+..
T Consensus       208 ~~~~~~~~-~G~WlDtGt~~slleA~~~i~~  237 (286)
T COG1209         208 YLVVAILI-RGWWLDTGTPESLLEANNFVRT  237 (286)
T ss_pred             cEEEEEEc-cceEEecCChhhHHHHHHHHHH
Confidence            34445555 7799999999999999877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
2iu8_A	374	Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Com		8e-38
3eh0_A	341	Crystal Structure Of Lpxd From Escherichia Coli Len		7e-34
3pmo_A	372	The Structure Of Lpxd From Pseudomonas Aeruginosa A		1e-29
4e75_A	357	Structure Of Lpxd From Acinetobacter Baumannii At 2		2e-25
1j2z_A	270	Crystal Structure Of Udp-n-acetylglucosamine Acyltr		3e-10
4e6t_A	294	Structure Of Lpxa From Acinetobacter Baumannii At 1		2e-09
4eqy_A	283	Crystal Structure Of Acyl-[acyl-Carrier-Protein]--U		2e-09
3t57_A	305	Activity And Crystal Structure Of Arabidopsis Udp-N		2e-09
4e6u_A	265	Structure Of Lpxa From Acinetobacter Baumannii At 1		4e-09
2aq9_A	262	Structure Of E. Coli Lpxa With A Bound Peptide That		1e-08
2jf2_A	264	Nucleotide Substrate Binding By Udp-n-acetylglucosa		2e-08
3r0s_A	266	Udp-N-Acetylglucosamine Acyltransferase From Campyl		1e-06
3hsq_A	259	Structural Basis For The Sugar Nucleotide And Acyl		3e-05
3fs8_A	273	Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Did		1e-04
4aa7_A	231	E.Coli Glmu In Complex With An Antibacterial Inhibi		2e-04
1hv9_A	456	Structure Of E. Coli Glmu: Analysis Of Pyrophosphor		2e-04

>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I) Length = 374

Iteration: 1
 Score =  153 bits (387), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 130/243 (53%), Gaps = 6/243 (2%)
Query: 20  FGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCI 79
           F +   LF T  D      F   H    + H +A I+  V IE  A+V   A +G+   I
Sbjct: 109 FQKCLELFITPVD----SGFPGIHPTA-VIHPTAIIEDHVCIEPYAVVCQHAHVGSACHI 163
Query: 80  GSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           GSG+V+G   T+G+ + I   V +   + IG   II  G  IG  GFG+     G     
Sbjct: 164 GSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHL 223
Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI 198
             L    I + VEIGAN+ IDRG ++ +V+ + SKIDNLVQI H V +G+  M+  Q GI
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGI 283
Query: 199 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ 258
           AGS  IG++V +GG+  +  H+ IA  V + A + V K IT PG YGG PA P  E  RQ
Sbjct: 284 AGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQ 343
Query: 259 VAN 261
           VA 
Sbjct: 344 VAK 346

>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli Length = 341

Iteration: 1
 Score =  140 bits (353), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 52  SACIDST------VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 105
           SA ID+T      V I   A++ S   LG NV IG+G  VG    IG  + +  NV + +
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 106 CI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
            I IG +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  
Sbjct: 163 EIQIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALD 221
Query: 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 224
           DT+IG+   IDN  QI HNV IG +  + G V +AGS  IG Y  +GG   +  H+ I  
Sbjct: 222 DTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICD 281
Query: 225 KVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 260
           KV +     V + ITEPG Y  G P  P   WR+  A
Sbjct: 282 KVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAA 318

>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A Resolution Length = 372

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNC 106
           I    A +D +  +   A++ S A +GA V IG+  V+G    IG+   +   V L  + 
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186
Query: 107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
            IG    I +G  IG +GFGF  +E G   K  Q+    IG+ VEIGAN+ IDRG+  DT
Sbjct: 187 TIGARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDT 245
Query: 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
           +IG+  K+DN + I HNV IG    +   VGI+GSA IG +  L G V +  H+ I   V
Sbjct: 246 LIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNV 305
Query: 227 RLAANSCVFKDITEPGDYGGFPAV-PIHEWRRQVA 260
            +   + V + ITEPG Y    A+ P  EW++  A
Sbjct: 306 FVTGMTMVTRSITEPGSYSSGTAMQPAAEWKKSAA 340

>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a Resolution (p21 Form) Length = 357

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIG- 109
           S  I+ST  I   A++   A +G  V IG   VVG    I   T +  NV +  +C I  
Sbjct: 102 STGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDS 161
Query: 110 -----------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
                      D   IH+   IG +GFGF     G   +  QL +  IGN V IG+N  I
Sbjct: 162 YVTITGSSKLRDRVRIHSSTVIGGEGFGF-APYQGKWHRIAQLGSVLIGNDVRIGSNCSI 220
Query: 159 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 218
           DRG+  +T++ D   IDNLVQI HNV IG +  +  + GIAGS  IG    L G   V  
Sbjct: 221 DRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAG 280
Query: 219 HVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQV 259
           H+SIA  V L   S V K+I+E G Y  G      + W++ +
Sbjct: 281 HLSIADNVTLTGMSMVTKNISEAGTYSSGTGLFENNHWKKTI 322

>pdb|1J2Z|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine Acyltransferase Length = 270

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG 124
           AI+  KA +   V IG   V+G  V + +   +  NV L           H  V    + 
Sbjct: 8   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQG---------HTFVGKNTEI 58
Query: 125 FGFFVDEHGNMLKKPQLLNARIGNHVE--IGANSCI---------DRGSWRDTVIGDHSK 173
           F F V     +  +PQ L  + G + E  IG ++ I           G  + T+IGD + 
Sbjct: 59  FPFAV-----LGTQPQDLKYK-GEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNL 112
Query: 174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           +   V + H+  IG  C+L   V +AG   IGDYV +GG  A+   V IA    +A  S 
Sbjct: 113 LMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSA 172
Query: 234 VFKDI 238
           + KD+
Sbjct: 173 LGKDV 177

>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a Resolution (P212121 Form) Length = 294

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
           ++ Q A   +  LI   AI+   AV+ ++V IG   ++GP VTIG  T +  +V +    
Sbjct: 26  LYFQGAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFT 85
Query: 108 -IGDSCIIHNGVCIG---QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW 163
            IG +  I     +G   QD           +  K +     IGN+  I  +  + RG+ 
Sbjct: 86  RIGQNNEIFQFASVGEVCQD-----------LKYKGEETWLEIGNNNLIREHCSLHRGTV 134
Query: 164 RD---TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV 220
           +D   T IG H+ +     I H+  +G   +    VG+AG   IGD+V +GG   +    
Sbjct: 135 QDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFC 194
Query: 221 SIASKVRLAANSCVFKDITEPGDYGGFPA 249
            I S   +   S + KD+       G PA
Sbjct: 195 KIDSYSMIGGASLILKDVPAYVMASGNPA 223

>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N- Acetylglucosamine O-Acyltransferase From Burkholderia Thailandensis Length = 283

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           I  T +IE GA +H        V +G   +VG  VTIG  T IG +            +I
Sbjct: 25  IHPTAIIEPGAQLHE------TVEVGPYAIVGSNVTIGARTTIGSH-----------SVI 67
Query: 115 HNGVCIGQDG-FGFFVDEHG---NMLKKPQLLNARIGNHVEIGANSCIDRGSWRD---TV 167
                IG+D   G +    G   +M  K +     IG+   I   + I  G+ +D   T 
Sbjct: 68  EGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTT 127
Query: 168 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 227
           +GD + I   V IGH+  +G   +L     +AG   IGD+  +GG   V  +V I +   
Sbjct: 128 LGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSM 187
Query: 228 LAANSCVFKDI 238
           L   S + +DI
Sbjct: 188 LGGASALVQDI 198

>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis Udp-N-Acetylglucosamine Acyltransferase Length = 305

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 85/209 (40%), Gaps = 30/209 (14%)
Query: 56  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------SNCII 108
           DS VLI   A+VH  AV      IG G  VGP  TIG S  +G    L        N  +
Sbjct: 5   DSEVLIHPSAVVHPNAV------IGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTEL 58
Query: 109 GDSCIIHNGVCIGQD--GFGF-----FVDEHGNMLKKPQLLNAR--------IGNHVEIG 153
           G+SC++  G  +G +  G+ F      +  H  +  K Q L  +        IGN+ EI 
Sbjct: 59  GESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIR 118
Query: 154 ANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 211
               I R S     TVIGD++ I     I H+  IG   +      +AG   + D     
Sbjct: 119 EFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTA 178
Query: 212 GRVAVRDHVSIASKVRLAANSCVFKDITE 240
           G   V     I S   +   S V +D+ +
Sbjct: 179 GASVVHQFCHIGSFAFIGGGSVVSQDVPK 207

>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a Resolution (P63 Form) Length = 265

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 18/197 (9%)
Query: 60  LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           LI   AI+   AV+ ++V IG   ++GP VTIG  T +  +V +                
Sbjct: 9   LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGF-----------TR 57
Query: 120 IGQDGFGFFVDEHGNMLK----KPQLLNARIGNHVEIGANSCIDRGSWRD---TVIGDHS 172
           IGQ+   F     G + +    K +     IGN+  I  +  + RG+ +D   T IG H+
Sbjct: 58  IGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHN 117
Query: 173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS 232
            +     I H+  +G   +    VG+AG   IGD+V +GG   +     I S   +   S
Sbjct: 118 LLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGAS 177
Query: 233 CVFKDITEPGDYGGFPA 249
            + KD+       G PA
Sbjct: 178 LILKDVPAYVMASGNPA 194

>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is Competitive With Acyl-Acp Length = 262

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCI 113
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG    
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61
Query: 114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
           I+    IG+      V++      +P  +   IG+   I  +  I RG+ +    G  +K
Sbjct: 62  IYQFASIGE------VNQDLKYAGEPTRV--EIGDRNRIRESVTIHRGTVQG---GGLTK 110
Query: 174 I--DNLV----QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 227
           +  DNL+     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I + V 
Sbjct: 111 VGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVM 170
Query: 228 LAANSCVFKDI 238
           +   S V +D+
Sbjct: 171 VGGCSGVAQDV 181

>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine Acyltransferase Length = 264

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDS 111
           + ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG  
Sbjct: 2   SMIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRD 61
Query: 112 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 171
             I+    IG+      V++      +P  +   IG+   I  +  I RG+ +    G  
Sbjct: 62  NEIYQFASIGE------VNQDLKYAGEPTRV--EIGDRNRIRESVTIHRGTVQG---GGL 110
Query: 172 SKI--DNLV----QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 225
           +K+  DNL+     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I + 
Sbjct: 111 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH 170
Query: 226 VRLAANSCVFKDI 238
           V +   S V +D+
Sbjct: 171 VMVGGCSGVAQDV 183

>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter Jejuni Length = 266

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 27/195 (13%)
Query: 47  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 106
            +  + A +   V+IE  A V   A +G NV I  G  +    TIG  + +      S  
Sbjct: 11  AVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV-----FSYA 65
Query: 107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD- 165
           I+GD         I QD             K+ Q     IG +  I   + I+ G+ +  
Sbjct: 66  IVGD---------IPQD----------ISYKEEQKSGVVIGKNATIREFATINSGTAKGD 106
Query: 166 --TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 223
             T IGD++ I     I H+  +G + +L     +AG   +GD+  +GG   +   V + 
Sbjct: 107 GFTRIGDNAFIXAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVG 166
Query: 224 SKVRLAANSCVFKDI 238
               +A  S + +DI
Sbjct: 167 EGCXIAGASALSQDI 181

>pdb|3HSQ|A Chain A, Structural Basis For The Sugar Nucleotide And Acyl Chain Selectivity Of Leptospira Interrogans Lpxa Length = 259

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG-FNVALSNCII 108
           H +A ID    +     V   +++  NV I  GT++   V I   + IG FN      +I
Sbjct: 4   HPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI 63
Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--T 166
           G          + QD  GF          +  L    IG+H      S I +G+  D  T
Sbjct: 64  G---------VMPQD-LGF---------NQQLLTKTVIGDHNIFREYSNIHKGTKEDSPT 104
Query: 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
           VIG+ +       +GH+  +G + +L     +AG  T+G++  + G VAV     +    
Sbjct: 105 VIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYS 164
Query: 227 RLAANSCVFKDITEPGDYGGFPA 249
            +A  + V +D+       G P+
Sbjct: 165 MVAGLAKVVQDVPPYSTVDGNPS 187

>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D- Glucose N-Acetyl Transferase From Thermoanaerobacterium Thermosaccharolyticum In Complex With Acetyl-Coa Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGF--GFFVDEHGNM 135
           I    ++   V IG++  I  NV +   CII D+  I  G  IG       + VD + + 
Sbjct: 5   ISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDR 64
Query: 136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 195
           + K   L   IG +  I   + I    + DT+IGD+ +  + V I  N  IG +  +   
Sbjct: 65  INKKHPL--IIGENALIRTENVI----YGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTL 118
Query: 196 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 243
             I     IG+YV +   V V +   I   V L  +  +  D T P +
Sbjct: 119 SDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSN 166

>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 15/196 (7%)
Query: 74  GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF--FVDE 131
           G +V I +  ++   VT+G    IG    + N +IGD C I     +          +  
Sbjct: 44  GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP 103
Query: 132 HGNMLKKPQLLN-ARIGNHVEIGANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGK 188
              +    +LL  A +GN VE+   + + +GS     T +GD        +IG NV IG 
Sbjct: 104 FARLRPGAELLEGAHVGNFVEM-KKARLGKGSKAGHLTYLGD-------AEIGDNVNIGA 155
Query: 189 SCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGG 246
             + C   G     T IGD V +G    +   V++     +AA + V +++ E       
Sbjct: 156 GTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISR 215
Query: 247 FPAVPIHEWRRQVANQ 262
            P      WRR V  +
Sbjct: 216 VPQTQKEGWRRPVKKK 231

>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase And Acetyltransferase Active Sites Length = 456

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 15/196 (7%)
Query: 74  GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF--FVDE 131
           G +V I +  ++   VT+G    IG    + N +IGD C I     +          +  
Sbjct: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP 328
Query: 132 HGNMLKKPQLLN-ARIGNHVEIGANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGK 188
              +    +LL  A +GN VE+   + + +GS     T +GD        +IG NV IG 
Sbjct: 329 FARLRPGAELLEGAHVGNFVEM-KKARLGKGSKAGHLTYLGD-------AEIGDNVNIGA 380
Query: 189 SCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGG 246
             + C   G     T IGD V +G    +   V++     +AA + V +++ E       
Sbjct: 381 GTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISR 440
Query: 247 FPAVPIHEWRRQVANQ 262
            P      WRR V  +
Sbjct: 441 VPQTQKEGWRRPVKKK 456

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	4e-92
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	4e-89
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	4e-04
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	5e-89
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	7e-04
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-44
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-04
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-25
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	3e-25
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	1e-24
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	6e-24
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	7e-24
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	2e-23
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	4e-17
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	8e-09
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	3e-16
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	8e-08
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	6e-05
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	3e-14
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	3e-11
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	1e-13
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	3e-08
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	6e-13
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	3e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	7e-13
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	4e-08
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	5e-04
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	5e-12
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-05
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	3e-08
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	1e-07
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-07
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	3e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	1e-06
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	2e-06
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	3e-06
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	3e-06
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	7e-04
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	2e-05
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	7e-05
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	5e-05
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	8e-05
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	2e-04
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	3e-04
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	4e-04
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	5e-04

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score =  276 bits (707), Expect = 4e-92
 Identities = 90/212 (42%), Positives = 120/212 (56%), Gaps = 1/212 (0%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
           H +A I+  V IE  A+V   A +G+   IGSG+V+G   T+G+ + I   V +     I
Sbjct: 134 HPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSI 193

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G   II  G  IG  GFG+     G       L    I + VEIGAN+ IDRG ++ +V+
Sbjct: 194 GKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVV 253

Query: 169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228
            + SKIDNLVQI H V +G+  M+  Q GIAGS  IG++V +GG+  +  H+ IA  V +
Sbjct: 254 REGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIM 313

Query: 229 AANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 260
            A + V K IT PG YGG PA P  E  RQVA
Sbjct: 314 MAQTGVTKSITSPGIYGGAPARPYQEIHRQVA 345

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score =  268 bits (687), Expect = 4e-89
 Identities = 81/213 (38%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
              A +D +  +   A++ S A +GA V IG+  V+G    IG+   +   V L  +  I
Sbjct: 129 AADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTI 188

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G    I +G  IG +GFGF  +E G   K  Q+    IG+ VEIGAN+ IDRG+  DT+I
Sbjct: 189 GARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLI 247

Query: 169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228
           G+  K+DN + I HNV IG    +   VGI+GSA IG +  L G V +  H+ I   V +
Sbjct: 248 GNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFV 307

Query: 229 AANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 260
              + V + ITEPG Y  G    P  EW++  A
Sbjct: 308 TGMTMVTRSITEPGSYSSGTAMQPAAEWKKSAA 340

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%)

Query: 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
           ++   +++D    +G    I     +   V I     IG    +G    +   V++   V
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186

Query: 227 RLAAN 231
            + A 
Sbjct: 187 TIGAR 191

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score =  266 bits (683), Expect = 5e-89
 Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 3/213 (1%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
             +A + + V I   A++ S   LG NV IG+G  VG    IG  + +  NV +     I
Sbjct: 107 DATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQI 166

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  DT+I
Sbjct: 167 GQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTII 225

Query: 169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228
           G+   IDN  QI HNV IG +  + G V +AGS  IG Y  +GG   +  H+ I  KV +
Sbjct: 226 GNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTV 285

Query: 229 AANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 260
                V + ITEPG Y  G P  P   WR+  A
Sbjct: 286 TGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAA 318

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
           VI   +K+ N V IG N  I     L   V I     +G    +G    +  +V+I  ++
Sbjct: 105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query: 227 RLAAN 231
           ++  N
Sbjct: 165 QIGQN 169

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score =  151 bits (382), Expect = 1e-44
 Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNV---ALS 104
           I  +   I   V IE    +    ++  NV I  G+ +G    +G+     +N       
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKH 69

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
             IIG++ +I     I  D       + G+  K     N +IGN+V+IG  S I      
Sbjct: 70  PLIIGENALIRTENVIYGDTIIGDNFQTGH--KVTIRENTKIGNNVKIGTLSDIQH---- 123

Query: 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG----------SATIGDYVTLGGRV 214
              IG++  I + V +G    I     L   V +              TI  +  +  R 
Sbjct: 124 HVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARS 183

Query: 215 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR 257
            V   + I     + A + V KD+ +     G PA  I   R+
Sbjct: 184 VVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAREICSIRK 226

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 168 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 227
           I   + I   V IG NV I  +  +     I  +  I     +G R  + +++      R
Sbjct: 5   ISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDR 64

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score =  100 bits (252), Expect = 2e-25
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 43  HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA 102
           H+ G +  Q+    S   I   AI+   A L   V +G   +VG  VTIG  T IG +  
Sbjct: 7   HHMGTLEAQTQGPGSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSV 66

Query: 103 LS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGA 154
           +  +  IG+   I +   +G                 PQ +          IG+   I  
Sbjct: 67  IEGHTTIGEDNRIGHYASVGGR---------------PQDMKYKDEPTRLVIGDRNTIRE 111

Query: 155 NSCIDRGSWRD---TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 211
            + I  G+ +D   T +GD + I   V IGH+  +G   +L     +AG   IGD+  +G
Sbjct: 112 FTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVG 171

Query: 212 GRVAVRDHVSIASKVRLAANSCVFKDI 238
           G   V  +V I +   L   S + +DI
Sbjct: 172 GMSGVHQYVRIGAHSMLGGASALVQDI 198

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score =   99 bits (250), Expect = 3e-25
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 26/195 (13%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCI 113
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG    
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGANSCIDRGSWRD- 165
           I+    IG+                 Q L          IG+   I  +  I RG+ +  
Sbjct: 62  IYQFASIGEV---------------NQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGG 106

Query: 166 --TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 223
             T +G  + +     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I 
Sbjct: 107 GLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIG 166

Query: 224 SKVRLAANSCVFKDI 238
           + V +   S V +D+
Sbjct: 167 AHVMVGGCSGVAQDV 181

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 98.0 bits (245), Expect = 1e-24
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIG-- 121
           AI+  KA L  +V +G  +++   V+I + T I  +V +     IG     H G  IG  
Sbjct: 7   AIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVM 66

Query: 122 -QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIGDHSKIDNLV 178
            QD    F  +              IG+H      S I +G+  D  TVIG+ +      
Sbjct: 67  PQDLG--FNQQLLTKTV--------IGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNS 116

Query: 179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI 238
            +GH+  +G + +L     +AG  T+G++  + G VAV     +     +A  + V +D+
Sbjct: 117 HVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDV 176

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 96.6 bits (241), Expect = 6e-24
 Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 26/185 (14%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQD 123
           AI+  KA +   V IG   V+G  V + +   +  NV L  +  +G +  I     +G  
Sbjct: 8   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 67

Query: 124 GFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGANSCIDRGSWRD---TVIGDHSK 173
                          PQ L          IG    I     I+ G+      T+IGD + 
Sbjct: 68  ---------------PQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNL 112

Query: 174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           +   V + H+  IG  C+L   V +AG   IGDYV +GG  A+   V IA    +A  S 
Sbjct: 113 LMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSA 172

Query: 234 VFKDI 238
           + KD+
Sbjct: 173 LGKDV 177

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 17/190 (8%)

Query: 56  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCII 114
           ++   I   A++   A LG +V I +   V     IG +  I     +  +  IGD   +
Sbjct: 2   NAMKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV 61

Query: 115 HNGVCIG---QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD---TVI 168
            +   +G   QD    + +E  + +         IG +  I   + I+ G+ +    T I
Sbjct: 62  FSYAIVGDIPQDIS--YKEEQKSGVV--------IGKNATIREFATINSGTAKGDGFTRI 111

Query: 169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228
           GD++ I     I H+  +G + +L     +AG   +GD+  +GG   +   V +     +
Sbjct: 112 GDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMI 171

Query: 229 AANSCVFKDI 238
           A  S + +DI
Sbjct: 172 AGASALSQDI 181

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 96.0 bits (239), Expect = 2e-23
 Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 24/206 (11%)

Query: 54  CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSC 112
             DS VLI   A+VH  AV+G  V +G    +G +V +G    +  +  +  N  +G+SC
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESC 62

Query: 113 IIHNGVCIGQDGFGFFVDEHGNML-------KKPQLLNARIG--NHVEIGANSCI----- 158
           ++  G  +G +  G+      N++        K Q L  + G    + IG N+ I     
Sbjct: 63  VLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCS 122

Query: 159 ------DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG 212
                        TVIGD++ I     I H+  IG   +      +AG   + D     G
Sbjct: 123 IHRSSKPSDK---TVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAG 179

Query: 213 RVAVRDHVSIASKVRLAANSCVFKDI 238
              V     I S   +   S V +D+
Sbjct: 180 ASVVHQFCHIGSFAFIGGGSVVSQDV 205

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 143 NARIGNHVEIGANSCIDRGS--WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 200
           +A +   V +G    +  G     D+ IGD + I+    + H+  +G +C L     +AG
Sbjct: 105 SAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAG 164

Query: 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
             ++G+   LG    V   V+I +   + A   V +D+ +     G PA   
Sbjct: 165 GVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPAKIK 216

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 27/120 (22%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS--- 104
             H SA +  +V +  G  V +   + A+  IG   ++     +     +G    L    
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPAS 160

Query: 105 ----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160
                  +G+   +  G  +                         IG    +GA   + R
Sbjct: 161 ALAGGVSVGERAFLGVGARVIP--------------------GVTIGADTIVGAGGVVVR 200

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI 204
                + I     I+        I     ++    I H   IG+   +      AG+  I
Sbjct: 91  EENAGILIMPYVVINA----KAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKI 146

Query: 205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
           G    LG    V  ++S+A    L   + + K+  E G + G PA  +
Sbjct: 147 GKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 194

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 41/145 (28%)

Query: 36  RQQFQKWHNGGGIF----HQSACIDSTVLIE--VGAIVHSKAVLGANVCIGSGTVVGPAV 89
           ++ +QK    G       H+SA I  + ++E   G ++    V+ A   I  G ++  + 
Sbjct: 61  KKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSS 120

Query: 90  TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNH 149
            I              C+IG+   +  G                         N +IG +
Sbjct: 121 VIE-----------HECVIGEFSHVSVGAKCAG--------------------NVKIGKN 149

Query: 150 VEIGANSCIDRGSWRDTVIGDHSKI 174
             +G NSC+         + D S +
Sbjct: 150 CFLGINSCVLPN----LSLADDSIL 170

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDS 111
           A I+  V++   +++  + V+G    +  G      V IG++  +G N  +   + + D 
Sbjct: 108 AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADD 167

Query: 112 CIIHNGVCIGQD 123
            I+  G  + ++
Sbjct: 168 SILGGGATLVKN 179

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 68.8 bits (168), Expect = 3e-14
 Identities = 34/182 (18%), Positives = 51/182 (28%), Gaps = 32/182 (17%)

Query: 74  GANVCIGSGTVVGPAVTIGQSTNIG-FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH 132
           G    I    +V     IG  + I  +        IG+ C +   V +G           
Sbjct: 1   GHMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGN---------- 50

Query: 133 GNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSC 190
                       RIGN V+I  N  +    +   D   G      N+      +      
Sbjct: 51  ----------RVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEY 100

Query: 191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAV 250
                        +    TLG    V    +I     + A + V KD+ +     G PA 
Sbjct: 101 RDT---------IVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPAR 151

Query: 251 PI 252
            I
Sbjct: 152 QI 153

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 60.0 bits (145), Expect = 3e-11
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNG 117
             I   AIV   A +GA+  I     +     IG+  ++G NV + +   IG+   I N 
Sbjct: 4   ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNN 63

Query: 118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 177
           V +          ++  +        + +  +V     +   +  +RDT++   + +   
Sbjct: 64  VSV---------YDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGAN 114

Query: 178 VQIGHNVAIGKSCMLCG 194
             +     IG+   +  
Sbjct: 115 CTVVCGATIGRYAFVGA 131

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 68.7 bits (167), Expect = 1e-13
 Identities = 24/214 (11%), Positives = 65/214 (30%), Gaps = 17/214 (7%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
           I+ ++A   +   I   A +     L  NV IG    +  A     +         S+ +
Sbjct: 61  IYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSV 120

Query: 108 IGDSCIIHNGVCIG------QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
             +  I  +   +         G      +   +  +  + ++RI + V++  N+ I   
Sbjct: 121 REECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHA 180

Query: 162 SWRDTV-----------IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTL 210
                              ++  I +  ++  +  +           +  S+ + ++  +
Sbjct: 181 FIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALI 240

Query: 211 GGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY 244
            G   ++ HV +     +     +  D      +
Sbjct: 241 EGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGH 274

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 35/210 (16%)

Query: 45  GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS 104
                   A I   V I+  ++    A+ G    +    ++       +   I       
Sbjct: 99  DRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIY--D 156

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEH-----------GNMLKKPQLL-NARIGNHVEI 152
              +  S I+H     G         EH           G+      +   A++  H  +
Sbjct: 157 RATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARV 216

Query: 153 GANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKS-------------------CM 191
            A +  D        + + +H+ I+    + H+V +G                       
Sbjct: 217 IAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHAC 276

Query: 192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVS 221
           + G++ I     I     +        H+ 
Sbjct: 277 IQGEILIERQVEISGRAAVIAFDDNTIHLR 306

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 65.6 bits (160), Expect = 6e-13
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSA 202
           +  IG++  I  N+ I+ G     VIG+ S ID    +G    +GK+C +     +AG  
Sbjct: 103 HVEIGDNAVIMMNATINIG----AVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVI 158

Query: 203 --------TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
                    + D V +G  V V + V++     +AA + V +D+       G PA  I
Sbjct: 159 EPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVI 216

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 60  LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           L  + A +   A++  +V IG   V+    TI     IG        +I  + ++     
Sbjct: 87  LKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIG-----EGSMIDMNAVLGGRAT 141

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
           +G++           +++ P      + + V IGAN  +  G      +G  + +
Sbjct: 142 VGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEG----VTVGKGAVV 192

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 66.8 bits (164), Expect = 7e-13
 Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 59/207 (28%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           +D+ V  +    V     +   V I     +     I     IG         IG +  +
Sbjct: 223 LDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIG-----KGSEIGPNSYL 277

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                + +                      +IG  VE+           +++VI + SKI
Sbjct: 278 RPYTILVE--------------------KNKIGASVEV-----------KESVIMEGSKI 306

Query: 175 DNLV-----QIGHNVAIGKSCMLCGQVGIAGS------------------ATIGDYVTLG 211
            +L       I  +V  G   ++                           A IG +V  G
Sbjct: 307 PHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTG 366

Query: 212 GRVAVRDHVSIASKVRLAANSCVFKDI 238
             V +   V I +  R+   + V +D+
Sbjct: 367 INVTILPGVKIGAYARIYPGAVVNRDV 393

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 38/187 (20%), Positives = 54/187 (28%), Gaps = 51/187 (27%)

Query: 47  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 106
           G    +  I   V+IE  A + S   +   V IG G+ +GP   +   T +         
Sbjct: 233 GNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILV-----EKN 287

Query: 107 IIGDSC-----IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA-----NS 156
            IG S      +I  G  I           H + +      ++ I   V  GA     N 
Sbjct: 288 KIGASVEVKESVIMEGSKIP----------HLSYVG-----DSVIAEDVNFGAGTLIANL 332

Query: 157 CIDRGSWRD---------------TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 201
             D    +                  IG H +    V I   V IG          I   
Sbjct: 333 RFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYAR------IYPG 386

Query: 202 ATIGDYV 208
           A +   V
Sbjct: 387 AVVNRDV 393

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 145 RIGNHVE-IGANSCIDRGS---WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 200
            IG     I  N               + D+ KI   V I  +  I     + G V I  
Sbjct: 208 DIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGK 267

Query: 201 SATIGDYVTLGGRVAVRDHVSI 222
            + IG    L     + +   I
Sbjct: 268 GSEIGPNSYLRPYTILVEKNKI 289

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 35/183 (19%)

Query: 73  LGANVCIGSGTVV--GPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFV 129
           +G NV I     +     ++IG +  I     LS    IG    I     +     G   
Sbjct: 35  VGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGI-- 92

Query: 130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS 189
                           + +   I + + +                     +G  +     
Sbjct: 93  ---------------EMYDFANISSRTIV---------YAAIDDFSGNALMGPTIPNQYK 128

Query: 190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 249
            +  G+V       +  +V +G    +  +V I   V + A S V + + +   Y G P 
Sbjct: 129 NVKTGKV------ILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPV 182

Query: 250 VPI 252
             I
Sbjct: 183 RKI 185

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 19/119 (15%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSNCIIGDSCIIH 115
           V I+   I+  K  +G+   I + T +      + +                I    I++
Sbjct: 59  VRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMY-----------DFANISSRTIVY 107

Query: 116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
             +               N  K  +     +  HV IGA+S I        VIG+   +
Sbjct: 108 AAIDDFSGNA-LMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN----VVIGEGVAV 161

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 55  IDSTV----LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGD 110
           + S V    +I   A+  S  +L   V   S + +  AV +  S  IG +  LSN +I  
Sbjct: 323 VSSVVSGDCIISGAALNRS--LLFTGVRANSYSRLENAV-VLPSVKIGRHAQLSNVVIDH 379

Query: 111 SCIIHNGVCIG----QDGFGFFVDEHG------NMLKK 138
             +I  G+ +G     D   F   E G      +M+ K
Sbjct: 380 GVVIPEGLIVGEDPELDAKRFRRTESGICLITQSMIDK 417

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 43/198 (21%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID  V I     + +  +L     IG+ TV+     +  ST IG    ++N +I +   +
Sbjct: 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDST-IGAGAVITNSMI-EESSV 328

Query: 115 HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 171
            +GV +G      +   H    + L         IGN VE+           + + IG++
Sbjct: 329 ADGVTVGP-----YA--HIRPNSSLGA----QVHIGNFVEV-----------KGSSIGEN 366

Query: 172 SKIDNL-----VQIGHNVAIGKSCMLCGQV-----GIAGSAT-IGDYVTLGGRVAVRDHV 220
           +K  +L      ++G NV  G      G +     G     T IGD V +G    +   V
Sbjct: 367 TKAGHLTYIGNCEVGSNVNFG-----AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPV 421

Query: 221 SIASKVRLAANSCVFKDI 238
            +     + A S + KD+
Sbjct: 422 ELGDNSLVGAGSTITKDV 439

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 43/198 (21%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID  V I    ++H    L     IG   VVGP  T+     +G   ++       S  I
Sbjct: 280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVA-VGDGASVVRTHG-SSSSI 337

Query: 115 HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 171
            +G  +G      F   +   G  L      + ++G  VE+           +++ IG  
Sbjct: 338 GDGAAVGP-----FT--YLRPGTALGA----DGKLGAFVEV-----------KNSTIGTG 375

Query: 172 SKIDNL-----VQIGHNVAIGKSCMLCGQV-----GIAGSAT-IGDYVTLGGRVAVRDHV 220
           +K+ +L       IG    IG        V     G +   T +G +V  G        V
Sbjct: 376 TKVPHLTYVGDADIGEYSNIG-----ASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPV 430

Query: 221 SIASKVRLAANSCVFKDI 238
           +I       A + V +D+
Sbjct: 431 TIGDGAYTGAGTVVREDV 448

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 29/177 (16%)

Query: 76  NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 135
           N+     T+    + +G+ +              +  ++++   IG              
Sbjct: 22  NLQFIKPTITNENILVGEYSYYDSKR----GESFEDQVLYHYEVIGD------------- 64

Query: 136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 195
                     IG    IG  +             D S     +          S      
Sbjct: 65  -------KLIIGRFCSIGPGTTFIMNG--ANHRMDGSTYPFHLFRMGWEKYMPSL---KD 112

Query: 196 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
           + + G   IG+ V +G  V +   V I     +AA + V K++      GG P   I
Sbjct: 113 LPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFI 169

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 37/137 (27%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 118
           V I+V  I+     LG  V IG+G V+   V IG    I     L + I+G+   I    
Sbjct: 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAI---- 326

Query: 119 CIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID 175
                  G F       G  L         +GN VEI           + + +G  SK++
Sbjct: 327 -------GPFS--RLRPGAELAA----ETHVGNFVEI-----------KKSTVGKGSKVN 362

Query: 176 NL-----VQIGHNVAIG 187
           +L      +IG N  IG
Sbjct: 363 HLTYVGDSEIGSNCNIG 379

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 37/137 (27%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 118
           + I+   I+    +LG  V IG+G V+     IG  + I     L +  +  +C +    
Sbjct: 275 ITIDTNVIIEGHVILGDRVRIGTGCVL-KNCVIGDDSEISPYTVLEDARLDANCTV---- 329

Query: 119 CIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID 175
                  G F       G  L +     A +GN VEI           +   +G  SK  
Sbjct: 330 -------GPFA--RLRPGAELAE----GAHVGNFVEI-----------KKARLGKGSKAG 365

Query: 176 NL-----VQIGHNVAIG 187
           +L      +IG  V IG
Sbjct: 366 HLSYLGDAEIGAGVNIG 382

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 13/154 (8%)

Query: 101 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160
           V   N I+G      +G   G          H       +L    IG+   IG+ +    
Sbjct: 20  VTNPNIIVGKHSYY-SGYYHGHSFDDCVRYLHPERDDVDKL---VIGSFCSIGSGAVF-- 73

Query: 161 GSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI--AGSATIGDYVTLGGRVAVRD 218
                 + G+     + +                + G   +G   IG  V +G    +  
Sbjct: 74  -----MMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMP 128

Query: 219 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
            V I     +A+ S V KD+      G  PA  I
Sbjct: 129 GVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHI 162

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 34/150 (22%)

Query: 137 KKPQLLNARI--GNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSC- 190
           K  Q +   +    +VE+G  S  D  +       ++  +  +++ ++IG   +IG    
Sbjct: 15  KSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVT 74

Query: 191 ----------------------------MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222
                                           Q+ I G   IG+ V +G  V +   V I
Sbjct: 75  IIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKI 134

Query: 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
                +AANS V KDI      GG PA  I
Sbjct: 135 GDGAIVAANSVVVKDIAPYMLAGGNPANEI 164

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 21/125 (16%)

Query: 74  GANVCIGSGTVVGPAVTI--GQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG------- 124
             NV +G  +           +     + +      IG  C I  GV I  +G       
Sbjct: 27  LENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDG 86

Query: 125 --FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH 182
             + F +  +G     P+L    I     IG           D  IG    I   V+IG 
Sbjct: 87  STYPFNLFGNGWEKHMPKLDQLPIKGDTIIG----------NDVWIGKDVVIMPGVKIGD 136

Query: 183 NVAIG 187
              + 
Sbjct: 137 GAIVA 141

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 10/133 (7%)

Query: 46  GGIFHQSACIDSTVLIEVGAIVHSK--AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103
            G+  +   +      EV A  H    A   +   +    V+     IG++  +     L
Sbjct: 247 TGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL 306

Query: 104 SNCIIGD-SCIIHNGVCIGQDGFGFFVD-EHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
            N  +G  S    N   I            HG       ++NA +G+ +  G NS +   
Sbjct: 307 DNAWMGKGSNAQENCY-IINSRLERNCVTAHGGK-----IINAHLGDMIFTGFNSFLQGS 360

Query: 162 SWRDTVIGDHSKI 174
                 IGD   +
Sbjct: 361 ESSPLKIGDGCVV 373

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 70  KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 129
            A +G          +  +  + ++        + N  +GD               GF  
Sbjct: 308 NAWMGKGSNAQENCYIINS-RLERNCVTAHGGKIINAHLGDMIFT-----------GF-- 353

Query: 130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
               + L+  +    +IG+   +  ++ ID     +
Sbjct: 354 ---NSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLE 386

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCML-------------C 193
           G+ V IG  + I  G     V+ D   +     IGH+  I +  +L              
Sbjct: 103 GSKVIIGRRTTIGAGF---EVVTDKCNV----TIGHDCMIARDVILRASDGHPIFDIHSK 155

Query: 194 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH 253
            ++  A    I  YV +G  V++   VS+ S   +   S V KD+       G PA  I 
Sbjct: 156 KRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKIIK 215

Query: 254 E---WRRQVANQIRSSKKRTS 271
               W R    ++ S  KR S
Sbjct: 216 RNIIWARTDKAELISDDKRCS 236

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 37/153 (24%)

Query: 137 KKPQLLNARIGN-HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 195
            + +LL+ ++ N ++ +G  S         +       +         + IG  C +   
Sbjct: 9   FRGKLLSEQVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSG 68

Query: 196 VGI------------------------------------AGSATIGDYVTLGGRVAVRDH 219
                                                  AG   IG  V +G        
Sbjct: 69  AAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG 128

Query: 220 VSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
           V +     + + + V  D+      GG PA  I
Sbjct: 129 VRVGHGAIIGSRALVTGDVEPYAIVGGNPARTI 161

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} Length = 310

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 44/125 (35%)

Query: 68  HSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 125
           H  A +G +  I  G+G V      IG +            IIG++  ++ GV +G    
Sbjct: 194 HPGAQIGHHFTIDHGTGVV------IGAT-----------SIIGNNVKLYQGVTLG--AK 234

Query: 126 GFFVDEHGNMLKKPQLLNAR---IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH 182
            F +D +GN +K       R   + + V + +N+         T++G        V IG 
Sbjct: 235 SFPLDNNGNPIKG----IPRHPILEDDVIVYSNA---------TILGR-------VTIGK 274

Query: 183 NVAIG 187
              +G
Sbjct: 275 GATVG 279

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 32/133 (24%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNI---------GFNV 101
           I  T  +   + +     +   V I  GT      G    IG  TNI             
Sbjct: 42  IAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGR 101

Query: 102 ALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
            + +     S  I + V I           H  ++  P    A IG+   IG  S +   
Sbjct: 102 VIGDDGQEYSVWIGDNVSIT----------HMALIHGP----AYIGDGCFIGFRSTV--- 144

Query: 162 SWRDTVIGDHSKI 174
              +  +G    +
Sbjct: 145 --FNARVGAGCVV 155

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A Length = 313

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 33/112 (29%)

Query: 68  HSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 125
           H  A +  +  I  G G V      IG++            IIG+ C I+  V +G   F
Sbjct: 167 HPGASIKGHFFIDHGVGVV------IGET-----------AIIGEWCRIYQSVTLGAMHF 209

Query: 126 GFFVDEHGNMLKKPQLLNAR---IGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
               +E G + +       R   +G++V IG  + +  G   + ++G H +I
Sbjct: 210 Q---EEGGVIKRG----TKRHPTVGDYVTIGTGAKV-LG---NIIVGSHVRI 250

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A Length = 247

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 29/154 (18%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNIGFNVALSNCIIGD 110
           ID T  I+  A V  +  +GANV +          G  + +G  +N           + D
Sbjct: 62  IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSN-----------VQD 110

Query: 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170
             ++H    +          E   +    +     IGN+V +   S +  G      +GD
Sbjct: 111 GVVLH---ALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQV-HGP---AAVGD 163

Query: 171 HSKIDNLVQIG---HNVAIGKSCMLCGQVGIAGS 201
            +     + +        +G +C+L  +    G 
Sbjct: 164 DT----FIGMQAFVFKSKVGNNCVLEPRSAAIGV 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	100.0
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	100.0
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	100.0
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	100.0
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	100.0
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	100.0
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	100.0
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	100.0
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.97
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.97
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.97
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.94
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.94
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.94
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.94
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.93
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.93
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.93
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.92
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.92
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.92
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.92
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.91
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.91
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.89
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.89
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.88
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.87
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.86
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.85
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.85
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.84
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.84
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.83
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.83
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.83
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.82
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.82
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.81
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.81
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.81
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.8
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.8
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.8
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.8
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.79
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.79
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.78
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.78
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.78
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.78
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.78
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.77
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.77
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.77
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.77
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.76
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.75
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.75
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.74
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.73
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.73
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.72
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.72
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.72
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.71
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.71
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.69
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.68
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.68
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.68
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.66
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.65
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.65
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.64
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.64
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.63
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.62
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.62
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.62
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.62
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.61
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.61
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.61
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.6
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.59
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.57
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.56
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.56
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.56
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.56
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.55
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.55
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.54
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.52
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.51
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.51
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.46
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.46
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.45
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.43
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.35
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.35
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.31
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.31
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.26
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.25
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.19
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.13
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.12
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.92

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=100.00  E-value=1.4e-37  Score=275.38  Aligned_cols=248  Identities=31%  Similarity=0.446  Sum_probs=214.8

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~   93 (271)
                      +.+|..+.+...+|......       ..+++++.|++++.|++++.|+++++|++++.||+++.|+++|+|++++.||+
T Consensus        83 ~~p~~~~~~~~~~~~~~~~~-------~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~  155 (357)
T 4e79_A           83 DNPYLAFAILTHVFDKKISS-------TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGK  155 (357)
T ss_dssp             SCHHHHHHHHHTTSSCCCCC-------CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCHHHHHHHHHHHhcccccc-------CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            56677777766666544332       34455667777777777777777777777777888888888888887888888


Q ss_pred             CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191           94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (271)
Q Consensus        94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~  172 (271)
                      +|.|+.++.| .++.||++|.|++++.|+.+.|.|.. ..+.+...++.+.++||++|.|+++++|..+.++++.||+++
T Consensus       156 ~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~-~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~  234 (357)
T 4e79_A          156 DCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAP-YQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGV  234 (357)
T ss_dssp             SCEECTTCEECTTCEECSSCEECTTCEESCCCCCEEE-ETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTC
T ss_pred             CCEECCCcEEecccEEEeEeeccCCeEECcccCcccc-cCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCc
Confidence            8888888888 78999999999999999999888876 456666667778999999999999999999888999999999


Q ss_pred             EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccC-CCCCeEEcCCCch
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI-TEPGDYGGFPAVP  251 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~-~~~~~~~g~p~~~  251 (271)
                      .+++++.+++++.||++|+++.++.+.++++||++|+||++++|.+++.||++++|++++.|.+|+ |++..+.|+|++.
T Consensus       235 ~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~~~~~G~Pa~~  314 (357)
T 4e79_A          235 IIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAGTYSSGTGLFE  314 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEEECSCCCEE
T ss_pred             ccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCCcEEEeCchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 8888899999999


Q ss_pred             hhHHHHHHHHhhcccccc
Q 024191          252 IHEWRRQVANQIRSSKKR  269 (271)
Q Consensus       252 i~~~~~~~~~~~r~~~~~  269 (271)
                      +++|.+.+..++||.++|
T Consensus       315 ~~~~~~~~~~~~~l~~~r  332 (357)
T 4e79_A          315 NNHWKKTIVRLRQLADVP  332 (357)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhhcchhh
Confidence            999999999999988744

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.4e-37  Score=275.04  Aligned_cols=247  Identities=32%  Similarity=0.495  Sum_probs=207.2

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~   93 (271)
                      +.+|..+.....+|......      ...+.+++.|++++.|++++.|+++++|++++.||+++.|+++|+|++++.||+
T Consensus        99 ~~p~~~~~~~~~~~~~~~~~------~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~  172 (372)
T 3pmo_A           99 ANPYLAYASLSHLFDRKPKA------AAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGE  172 (372)
T ss_dssp             SCHHHHHHHHHGGGCCCCCC------CSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCHHHHHHHHHHHhcccccc------ccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            55677776666666544321      234555666777777777777777777777777777777777777777777777


Q ss_pred             CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191           94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (271)
Q Consensus        94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~  172 (271)
                      +|.|+.++.| .++.||++|.|++++.|+.+.|.+.. ..+.+....+.+.++||+++.|++++.|..+...++.||+++
T Consensus       173 ~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~-~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~  251 (372)
T 3pmo_A          173 GGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFAN-EKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGV  251 (372)
T ss_dssp             TCEECTTCEECTTEEECTTCEECTTCEEEECCCCEEE-ETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTC
T ss_pred             CcccCCCcEEEeeeEECceeeccCCcEEecCcccccc-cCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCC
Confidence            7777777777 67889999999999999988888776 456666666777999999999999999998888899999999


Q ss_pred             EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccC-CCCCeEEcCCCch
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI-TEPGDYGGFPAVP  251 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~-~~~~~~~g~p~~~  251 (271)
                      .+++++.+++++.||++|+++.++.+.++++||++|+||+++.|.++++||++++|++++.|++|+ |+++.+.|+||+.
T Consensus       252 ~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k~v~~~~~~~~G~Pa~~  331 (372)
T 3pmo_A          252 KLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRSITEPGSYSSGTAMQP  331 (372)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEECCSCCCCC
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEEccCcCCCCcEEEeCchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 8888999999999


Q ss_pred             hhHHHHHHHHhhcccc
Q 024191          252 IHEWRRQVANQIRSSK  267 (271)
Q Consensus       252 i~~~~~~~~~~~r~~~  267 (271)
                      +++|.|....+++|.+
T Consensus       332 ~~~~~~~~~~~~~l~~  347 (372)
T 3pmo_A          332 AAEWKKSAARIRQLDD  347 (372)
T ss_dssp             HHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888877776653

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=100.00  E-value=8e-37  Score=269.32  Aligned_cols=247  Identities=34%  Similarity=0.570  Sum_probs=208.0

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~   93 (271)
                      +.++..+.....+|......      ...+++++.|++++.|++++.|+++++|++++.||+++.|+++|+|+.++.||+
T Consensus        77 ~~p~~~~~~~~~~~~~~~~~------~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~  150 (341)
T 3eh0_A           77 KNPYLTYARMAQILDTTPQP------AQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGA  150 (341)
T ss_dssp             SCHHHHHHHHHHHHCCCCCS------CCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCHHHHHHHHHHHhcccCCc------cCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECC
Confidence            56666676666666543321      234555667777777777777777777777777777777777777777778888


Q ss_pred             CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191           94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (271)
Q Consensus        94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~  172 (271)
                      +|.|+.++.| .++.||++|.|++++.|+.+.|++... .+.+...++.+.++||+++.|++++.+..+...++.||+++
T Consensus       151 ~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~-~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~  229 (341)
T 3eh0_A          151 GSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYAND-RGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGV  229 (341)
T ss_dssp             TCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEE-TTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTC
T ss_pred             CcEECCCcEECCCCEECCccEEcCCcEECCcccccccc-CCccccccccCcEEECCCcEECCccEeeccccCceEeccce
Confidence            8888888888 789999999999999999888887654 34555566667999999999999999998888899999999


Q ss_pred             EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCC-CCCeEEcCCCch
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT-EPGDYGGFPAVP  251 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~-~~~~~~g~p~~~  251 (271)
                      .+++++.+++++.||++|+++.++.+.++++||++|+||++++|.+++.||++++|++++.|++|+| +++.+.|+||+.
T Consensus       230 ~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~~~~~~~~G~Pa~~  309 (341)
T 3eh0_A          230 IIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQP  309 (341)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBCSCEEEECCCCCEE
T ss_pred             EECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcCCCCeEEEecCchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 777889999999


Q ss_pred             hhHHHHHHHHhhcccc
Q 024191          252 IHEWRRQVANQIRSSK  267 (271)
Q Consensus       252 i~~~~~~~~~~~r~~~  267 (271)
                      +++|.|....+++|.+
T Consensus       310 ~~~~~~~~~~~~~l~~  325 (341)
T 3eh0_A          310 NKVWRKTAALVMNIDD  325 (341)
T ss_dssp             HHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhHHH
Confidence            9999888777776643

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=100.00  E-value=9.9e-35  Score=259.13  Aligned_cols=222  Identities=41%  Similarity=0.637  Sum_probs=182.7

Q ss_pred             CCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCC
Q 024191           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD  123 (271)
Q Consensus        45 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~  123 (271)
                      +.+.|++++.|++++.|+++++|++++.||+++.|+++++|++++.||++|.|+.++.| .++.||++|.|++++.|+.+
T Consensus       129 ~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~  208 (374)
T 2iu8_A          129 PTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSC  208 (374)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEE
T ss_pred             CCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcC
Confidence            34445555555555555555555555666666666666666666666666777767766 67888888888888888877


Q ss_pred             CceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcE
Q 024191          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT  203 (271)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~  203 (271)
                      .|.+....++.+...++.+.++||++|.|+++++|..+.+.++.||+++++++.+.|++++.||+++.+.+++.+.++++
T Consensus       209 ~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~~~  288 (374)
T 2iu8_A          209 GFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTK  288 (374)
T ss_dssp             CSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             CcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCCcE
Confidence            77776655555666666678999999999999999998888999999999999999999999999999999999999999


Q ss_pred             ECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhhccc
Q 024191          204 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSS  266 (271)
Q Consensus       204 Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r~~  266 (271)
                      ||++|+||+++.|.++++||++++|++++.|++|+|+++++.|+||+.+++|.+....+.||.
T Consensus       289 Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l~  351 (374)
T 2iu8_A          289 IGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQVAKVRNLP  351 (374)
T ss_dssp             ECSSCEECTTCEECSSCEECTTEEECTTCEECSCBCSCEEEEETTEEEHHHHHHHHHHHHTHH
T ss_pred             ECCCeEEecCcEECCCcccCCCcEEccCceeecccCCCcEEeCCCCchhHHHHHHHHHHHhHH
Confidence            999999999999999999999999999999999999999999999999998876666555543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=3e-33  Score=242.96  Aligned_cols=205  Identities=22%  Similarity=0.220  Sum_probs=176.6

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-----ceEECCCcEEC
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-----NCIIGDSCIIH  115 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-----~~~Ig~~~~I~  115 (271)
                      .++++++.|++++.|++++.|+++|+|+++++||+++.|+++++|.+++.||++|.|++++.|.     ++.||+++.|+
T Consensus         8 ~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig   87 (305)
T 3t57_A            8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIG   87 (305)
T ss_dssp             -CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEEC
T ss_pred             CeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEEC
Confidence            4566777788888888888888888888888888888888888888888888888888888885     69999999999


Q ss_pred             CCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCc--CCeEECCCcEECCCcEEccccEECCCCEEc
Q 024191          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLC  193 (271)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~--~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~  193 (271)
                      +++.|+..+.++.       +...+.....||+++.|++++.|..++.  ..+.||+++.++.++++++++.||++|+++
T Consensus        88 ~~a~Ig~~~q~~~-------~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~  160 (305)
T 3t57_A           88 HHAVVGVKCQDLK-------YKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFA  160 (305)
T ss_dssp             TTCEEEECCCCTT-------CCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEEC
T ss_pred             CccEeCccccccc-------eecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEEC
Confidence            9999964321110       0112234799999999999999987653  679999999999999999999999999999


Q ss_pred             ccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          194 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       194 ~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      +++.+.++++|||+++||+++.|.++++||++++|+++|+|.+|+||++++.|+||+..
T Consensus       161 ~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~dvp~~~~~~G~Pa~~~  219 (305)
T 3t57_A          161 NNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKYMMVAGERAELR  219 (305)
T ss_dssp             TTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEE
T ss_pred             CCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcccCCCCeEEecCCcEEe
Confidence            99999999999999999999999999999999999999999999999999999999764

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=100.00  E-value=1.1e-32  Score=235.86  Aligned_cols=188  Identities=27%  Similarity=0.364  Sum_probs=147.7

Q ss_pred             CCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC--------------------cEECCCCEECCccEE-
Q 024191           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA--------------------VTIGQSTNIGFNVAL-  103 (271)
Q Consensus        45 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~--------------------~~Ig~~~~Ig~~~~I-  103 (271)
                      +++.|++++.|++++.|++++.|++++.|++++.||++|.|+++                    +.||++|.|++++.| 
T Consensus         7 ~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~   86 (273)
T 3fs8_A            7 KSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIY   86 (273)
T ss_dssp             TTCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEE
T ss_pred             CCeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEe
Confidence            34445555555555555544444444444444444444444443                    566666666666666 


Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|++++.|..                    ++.||+++.|+.++.+.    .++.||+++.++.++.++++
T Consensus        87 ~~~~Ig~~~~Ig~~~~I~~--------------------~~~Ig~~~~Ig~~~~i~----~~~~IG~~~~I~~~~~I~~~  142 (273)
T 3fs8_A           87 GDTIIGDNFQTGHKVTIRE--------------------NTKIGNNVKIGTLSDIQ----HHVYIGNYVNIHSNVFVGEK  142 (273)
T ss_dssp             SSCEECTTCEECSSCEECS--------------------SCEECSSCEECTTCEEC----SSCEECSSCEECTTCEECTT
T ss_pred             CCCEECCCCEECCceEECC--------------------CCEECCCCEECccceeC----CceEECCceEECCCCEECCC
Confidence            5778888888888888864                    88889999998888886    56999999999999999999


Q ss_pred             cEECCCCEEcccceecc----------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhh
Q 024191          184 VAIGKSCMLCGQVGIAG----------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  253 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~----------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~  253 (271)
                      +.+++++++++++.+.+          +++||++|+||.+++|.++++||++++|+++|+|.+|+|+++++.|+||+.++
T Consensus       143 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~~~G~PA~~i~  222 (273)
T 3fs8_A          143 SIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAREIC  222 (273)
T ss_dssp             CEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEE
T ss_pred             ceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcEEEecCcEEec
Confidence            99999999999888876          79999999999999999999999999999999999999999999999999988


Q ss_pred             HHH
Q 024191          254 EWR  256 (271)
Q Consensus       254 ~~~  256 (271)
                      .++
T Consensus       223 ~~~  225 (273)
T 3fs8_A          223 SIR  225 (273)
T ss_dssp             EGG
T ss_pred             ccc
Confidence            654

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=100.00  E-value=9.1e-32  Score=229.34  Aligned_cols=188  Identities=28%  Similarity=0.393  Sum_probs=150.8

Q ss_pred             CCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCce
Q 024191           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (271)
Q Consensus        57 ~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~  135 (271)
                      .++.|++.+.|++++.|++++.|+++|+|++++.||++|.|++++.| .++.||++|.|++++.|+..+.++        
T Consensus         6 ~~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~--------   77 (265)
T 4e6u_A            6 NHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDL--------   77 (265)
T ss_dssp             --CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCT--------
T ss_pred             CCCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccc--------
Confidence            34444444455555555566666666666666666666666666666 458888888888888886433221        


Q ss_pred             ecCCceeceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEcc
Q 024191          136 LKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG  212 (271)
Q Consensus       136 ~~~~~~~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~  212 (271)
                      .+..+...++||+++.|++++.+..++.   ..+.||+++.++.++.+++++.|+++++++.++.+.++++||++|+||+
T Consensus        78 ~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~  157 (265)
T 4e6u_A           78 KYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGG  157 (265)
T ss_dssp             TCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECT
T ss_pred             cccCCCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcC
Confidence            1112234899999999999999987654   3599999999999999999999999999999999999999999999999


Q ss_pred             ccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          213 RVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       213 ~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      +++|.++++||++++|+++++|.+|+|+++++.|+||+.+
T Consensus       158 ~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~~~G~pa~~~  197 (265)
T 4e6u_A          158 NSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAHAF  197 (265)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSBBCTTEEEEETTEEEE
T ss_pred             CCEECCCcEECCCCEEcCCCEEcccCCCCeEEEccCCEEe
Confidence            9999999999999999999999999999999999999876

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=100.00  E-value=1.8e-31  Score=227.56  Aligned_cols=184  Identities=22%  Similarity=0.316  Sum_probs=144.1

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      |++.++|+++++|++++.|+++++|++++.||++|+|.+++.|..           ++.||++|.|++++.|+..+.++ 
T Consensus         7 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g-----------~~~IG~~~~I~~~a~I~~~~~~~-   74 (266)
T 3r0s_A            7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILS-----------DTTIGDHSRVFSYAIVGDIPQDI-   74 (266)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS-----------SCEECTTCEECTTCEEEECCSCS-
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeC-----------CcEECCCcEEccCceeccCCccc-
Confidence            666666666666666666665555555555555555554444433           45567777777777775332111 


Q ss_pred             EccCCceecCCce-eceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEE
Q 024191          129 VDEHGNMLKKPQL-LNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI  204 (271)
Q Consensus       129 ~~~~~~~~~~~~~-~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~I  204 (271)
                             .+..+. ..+.||+++.|++++.+..+..   ..+.||+++.++.++.+.+++.||++++++.++.+.++++|
T Consensus        75 -------~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~I  147 (266)
T 3r0s_A           75 -------SYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVEL  147 (266)
T ss_dssp             -------CCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             -------cccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEE
Confidence                   111112 3899999999999999987654   34999999999999999999999999999999999999999


Q ss_pred             CCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191          205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       205 g~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      ||+++||++++|.++++||++++|+++++|.+|+||++++.|+||+.
T Consensus       148 gd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~~~~~G~Pa~~  194 (266)
T 3r0s_A          148 GDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFCLAEGNRASI  194 (266)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSSCBBCSCBCTTEEEEEBTEEE
T ss_pred             CCCcEEccCCEECCCcEECCCCEEccCCeEecccCCCeEEeccCcEE
Confidence            99999999999999999999999999999999999999999999987

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=100.00  E-value=4.6e-31  Score=225.35  Aligned_cols=184  Identities=27%  Similarity=0.383  Sum_probs=142.5

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCcee
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      |++.+.|.++++|++++.|+++++|+++            +.||++|.|++++.| .++.||++|.|++++.|+..+.++
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~------------v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~   71 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDG------------VKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDL   71 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTT------------CEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCS
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCC------------CEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccc
Confidence            4555555444444444444444444444            444444444444444 256778888888888886433211


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCcC---CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEE
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI  204 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~---~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~I  204 (271)
                              .+..+...++||+++.|++++.+..++..   .+.||+++.++.++.+++++.||+++++++++.+.++++|
T Consensus        72 --------~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~I  143 (270)
T 1j2z_A           72 --------KYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEI  143 (270)
T ss_dssp             --------SCCSCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             --------cccCCccceEECCCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEE
Confidence                    11122348999999999999999877542   5999999999999999999999999999999999999999


Q ss_pred             CCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       205 g~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      |++++||++++|.++++||++++|+++++|.+|+||++++.|+||+.+
T Consensus       144 gd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~dvp~~~~~~G~pa~~~  191 (270)
T 1j2z_A          144 GDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIR  191 (270)
T ss_dssp             CSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEE
T ss_pred             CCCeEEecCCEECCCcEeCCceEEecCcEecccCCCCeEEecCCcEEe
Confidence            999999999999999999999999999999999999999999999887

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=100.00  E-value=4.6e-31  Score=224.62  Aligned_cols=188  Identities=27%  Similarity=0.390  Sum_probs=151.7

Q ss_pred             CCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCce
Q 024191           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (271)
Q Consensus        57 ~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~  135 (271)
                      +++.|++.+.|++++.|++++.|+++|+|++++.||++|.|++++.| .++.||++|.|++++.|+...+++        
T Consensus         4 ~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~--------   75 (262)
T 2qia_A            4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDL--------   75 (262)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCT--------
T ss_pred             CCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccc--------
Confidence            34444444444455555556666666666666666666777776666 468889999999999986432211        


Q ss_pred             ecCCceeceEECCCcEECCccEEeCCCcC---CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEcc
Q 024191          136 LKKPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG  212 (271)
Q Consensus       136 ~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~---~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~  212 (271)
                      .+..+...+.||+++.|++++.+..+...   .+.||+++.++.++.+.+++.||+++++++++.+.++++||++++||+
T Consensus        76 ~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~  155 (262)
T 2qia_A           76 KYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGG  155 (262)
T ss_dssp             TCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECT
T ss_pred             cccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEcc
Confidence            11122347999999999999999876543   499999999999999999999999999999999999999999999999


Q ss_pred             ccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          213 RVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       213 ~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      +++|.++++||++++|+++|+|.+|+|+++++.|+||+.+
T Consensus       156 ~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~  195 (262)
T 2qia_A          156 MTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPF  195 (262)
T ss_dssp             TCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEEE
T ss_pred             CCEECCCCEECCCCEEccCCEECCcCCCCeEEeccCceEe
Confidence            9999999999999999999999999999999999999876

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=100.00  E-value=4.8e-31  Score=224.10  Aligned_cols=185  Identities=25%  Similarity=0.357  Sum_probs=144.3

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      |++++.|+++++|++++.|+++++|++++.||++|+|.+++.|..           ++.||+++.|++++.|+..+.++.
T Consensus         3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~-----------~~~IG~~~~I~~~a~Ig~~~~~~~   71 (259)
T 3hsq_A            3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICA-----------GSEIGKFNRFHQGAVIGVMPQDLG   71 (259)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECT-----------TEEECSSCEECTTCEEEECCSCTT
T ss_pred             cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcC-----------CcEECCCcEECCCCEECCCccccc
Confidence            555666666655555555555555555555555554444444433           366777777777777753322210


Q ss_pred             EccCCceecCCc-eeceEECCCcEECCccEEeCCCc--CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEEC
Q 024191          129 VDEHGNMLKKPQ-LLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG  205 (271)
Q Consensus       129 ~~~~~~~~~~~~-~~~~~Ig~~~~I~~~~~i~~~~~--~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig  205 (271)
                              +..+ ...+.||+++.|++++.+..+..  ..+.||+++.++.++++++++.||+++++++++.+.++++||
T Consensus        72 --------~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Ig  143 (259)
T 3hsq_A           72 --------FNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLG  143 (259)
T ss_dssp             --------CCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred             --------ccCccCCcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEEC
Confidence                    1111 24899999999999999987654  479999999999999999999999999999999999999999


Q ss_pred             CCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          206 DYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       206 ~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      ++|+||++++|.++++||++++|+++|+|.+|+|+++++.|+||+.+
T Consensus       144 d~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~dvp~~~~~~G~pa~~~  190 (259)
T 3hsq_A          144 NFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDVPPYSTVDGNPSTVV  190 (259)
T ss_dssp             SSCEECSSEEECTTCEECTTCEECSSEEECSBBCTTEEEETTTTEEE
T ss_pred             CCcEEeCCCEECCCCEECCCCEECCCCEEcccCCCCcEEeccCcEEE
Confidence            99999999999999999999999999999999999999999999875

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=100.00  E-value=4.7e-31  Score=226.92  Aligned_cols=173  Identities=28%  Similarity=0.387  Sum_probs=134.9

Q ss_pred             EECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCc
Q 024191           72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV  150 (271)
Q Consensus        72 ~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~  150 (271)
                      .|++++.|+++|+|++++.||++|.|+.++.| .++.||++|.|++++.|+..+.++        .+..+...++||+++
T Consensus        36 ~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~--------~~~g~~~~v~IG~~~  107 (283)
T 4eqy_A           36 QLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDM--------KYKDEPTRLVIGDRN  107 (283)
T ss_dssp             EECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCT--------TCCCCCCEEEECSSC
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccc--------cccCCCceEEECCCc
Confidence            33333333444444444444444444444444 256777777888888775332111        111223489999999


Q ss_pred             EECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE
Q 024191          151 EIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR  227 (271)
Q Consensus       151 ~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~  227 (271)
                      .|++++.+..++.   ..+.||+++.++.++.+++++.||++++++.++.+.++++||++|+||++++|.++++||++++
T Consensus       108 ~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~v  187 (283)
T 4eqy_A          108 TIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSM  187 (283)
T ss_dssp             EECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcE
Confidence            9999999987654   2499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCcEEeccCCCCCeEEcCCCchh
Q 024191          228 LAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       228 i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      |+++++|.+|+|+++++.|+||+.+
T Consensus       188 vg~~s~V~~dvp~~~~~~G~pa~~~  212 (283)
T 4eqy_A          188 LGGASALVQDIPPFVIAAGNKAEPH  212 (283)
T ss_dssp             ECTTCEECSBBCTTEEEETBTTEEE
T ss_pred             ECCCCeEecccCCCcEEeccCcEEe
Confidence            9999999999999999999999876

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.97  E-value=2.7e-30  Score=236.94  Aligned_cols=223  Identities=22%  Similarity=0.296  Sum_probs=180.4

Q ss_pred             eeEEeeccccHHHHHH--HHhhhccCCCCCchhhhh------hcccCC-CcEEccCcEECCCcEECCCCEECcCcEECCC
Q 024191            6 FVHYYRLTKTYKQDFG--RFCNLFSTKSDIESRQQF------QKWHNG-GGIFHQSACIDSTVLIEVGAIVHSKAVLGAN   76 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~-~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~   76 (271)
                      .++.|.+ +++|.+++  +++++..++..+......      ..++.+ .+.+++++.|++++.|++++.|++++.||++
T Consensus       220 ~v~~~~~-~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~  298 (468)
T 1hm9_A          220 KVGAYTL-KDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAE  298 (468)
T ss_dssp             CEEEEEC-SSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTT
T ss_pred             EEEEEEc-CChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCC
Confidence            4677777 78898754  777776665433322110      011121 3457777777777788888888788888888


Q ss_pred             cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191           77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus        77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                      +.|++++.|+ ++.||++|.|+ ++.|.++.||+++.|++++.|..                    +++||+++.|+.++
T Consensus       299 ~~I~~~~~i~-~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~--------------------~~~ig~~~~Ig~~~  356 (468)
T 1hm9_A          299 TVLTNGTYVV-DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRP--------------------NSSLGAQVHIGNFV  356 (468)
T ss_dssp             CEECTTCEEE-SCEECTTCEEC-SCEEESCEECTTCEECSSCEECS--------------------SCEECTTCEEEEEE
T ss_pred             CEECCCCEEe-ccEEeCCcEEE-EEEEeccccCCCcEECCceEEec--------------------CcEECCccEECCCc
Confidence            8888888887 77889999999 88998999999999999999974                    89999999999999


Q ss_pred             EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      .+.     ++.||+++.+++.+.+ .++.||++|.|+.++.+..       +++||++|+||++++|.++++||++++|+
T Consensus       357 ~i~-----~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~  430 (468)
T 1hm9_A          357 EVK-----GSSIGENTKAGHLTYI-GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVG  430 (468)
T ss_dssp             EEE-----SCEECTTCEEEEEEEE-ESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred             EEe-----eeEEcCCcEeCCceEE-ccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEEC
Confidence            885     5799999999888877 4788888888888887765       79999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCeEEcCCCchhhH-HHH
Q 024191          230 ANSCVFKDITEPGDYGGFPAVPIHE-WRR  257 (271)
Q Consensus       230 ~~s~v~~~~~~~~~~~g~p~~~i~~-~~~  257 (271)
                      +++.|.+|+|+++++.|+||+.++. |.|
T Consensus       431 ~~s~v~~~v~~~~~~~G~pa~~~~~~~~~  459 (468)
T 1hm9_A          431 AGSTITKDVPADAIAIGRGRQINKDEYAT  459 (468)
T ss_dssp             TTCEECSCBCTTCEECCSCCCCCCTTGGG
T ss_pred             CCCEECCCCCCCCEEEcCcceeehhhhhh
Confidence            9999999999999999999998763 443

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.97  E-value=8.5e-31  Score=239.40  Aligned_cols=221  Identities=21%  Similarity=0.271  Sum_probs=181.7

Q ss_pred             eEEeeccccHHH--HHHHHhhhccCCCCCchhhhhhcc-------cCC-CcEEccCcEECCCcEECCCCEECcCcEECCC
Q 024191            7 VHYYRLTKTYKQ--DFGRFCNLFSTKSDIESRQQFQKW-------HNG-GGIFHQSACIDSTVLIEVGAIVHSKAVLGAN   76 (271)
Q Consensus         7 ~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~   76 (271)
                      ++.|.. +++|.  ++.+++++..++..+..... ..+       ..+ .+.+++++.|++++.|++++.|++++.||++
T Consensus       212 v~~~~~-~~~~~~~~I~tpeDl~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~  289 (456)
T 2v0h_A          212 VVAVQA-TDVMEVEGANNRLQLAALERYFQNKQA-SKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDR  289 (456)
T ss_dssp             EEEEEC-SCTGGGCCCSSHHHHHHHHHHHHHHHH-HHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTT
T ss_pred             EEEEEe-CCcceEEeCCCHHHHHHHHHHHHHHHH-HHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCC
Confidence            555665 45554  44566666655543322211 111       122 4567778888888888888888888889999


Q ss_pred             cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191           77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  156 (271)
Q Consensus        77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~  156 (271)
                      +.|+++|.|. ++.||++|.|++++.|.++.||+++.|++++.|..                    .+.||+++.|++++
T Consensus       290 ~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~--------------------~~~ig~~~~ig~~~  348 (456)
T 2v0h_A          290 VKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRP--------------------GAELAAETHVGNFV  348 (456)
T ss_dssp             CEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECT--------------------TCEECTTCEEEEEE
T ss_pred             CEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECC--------------------CCEECCCCEECCCC
Confidence            9999999987 78899999999999999999999999999999974                    88999999999999


Q ss_pred             EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEEc
Q 024191          157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLA  229 (271)
Q Consensus       157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~  229 (271)
                      .+.     ++.|++++.+++.+.+ .++.||++|+|+.++.+..       +++||++|+||++++|.++++||++++|+
T Consensus       349 ~i~-----~~~i~~~~~i~~~~~~-~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig  422 (456)
T 2v0h_A          349 EIK-----KSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIG  422 (456)
T ss_dssp             EEE-----SCEECTTCEEEEEEEE-ESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEEC
T ss_pred             EEe-----ccEECCCCEeccceee-cCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEEC
Confidence            995     5789999999888777 5788888888888888776       89999999999999999999999999999


Q ss_pred             CCcEEeccCCCCCeEEcCCCchhhH-HH
Q 024191          230 ANSCVFKDITEPGDYGGFPAVPIHE-WR  256 (271)
Q Consensus       230 ~~s~v~~~~~~~~~~~g~p~~~i~~-~~  256 (271)
                      +++.|.+|+|+++++.|+||+.++. |.
T Consensus       423 ~~s~v~~~v~~~~~~~G~pa~~~~~~~~  450 (456)
T 2v0h_A          423 AGTTITRDVGENELVITRVAQRHIQGWQ  450 (456)
T ss_dssp             TTCEECSCBCTTCEECCCCCCCCCTTCC
T ss_pred             CCCEECCCcCCCCEEEccCceehhhhHh
Confidence            9999999999999999999999864 54

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.97  E-value=3.5e-30  Score=235.51  Aligned_cols=224  Identities=17%  Similarity=0.233  Sum_probs=180.2

Q ss_pred             eeEEeeccccHHHH--HHHHhhhccCCCCCchhhhhhccc--------CCCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191            6 FVHYYRLTKTYKQD--FGRFCNLFSTKSDIESRQQFQKWH--------NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGA   75 (271)
Q Consensus         6 ~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~   75 (271)
                      .++.|.. +++|.+  +.+++++..+...+.... ...++        .....+++++.|++++.|+++|.|.+++.||+
T Consensus       214 ~v~~~~~-~~~~~~~~I~tp~Dl~~ae~~l~~~~-~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~  291 (459)
T 4fce_A          214 KIATVHP-TRLSEVEGVNNRLQLSALERVFQTEQ-AEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGD  291 (459)
T ss_dssp             CEEEECC-SSGGGGCCCSSHHHHHHHHHHHHHHH-HHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECT
T ss_pred             eEEEEEc-CCHHHhhCCCCHHHHHHHHHHHHHHH-HHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECC
Confidence            4566666 666754  456666655543222211 01111        11244777888999999999999988899999


Q ss_pred             CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191           76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN  155 (271)
Q Consensus        76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~  155 (271)
                      ++.|+++|+|. ++.||++|.|++++.|.++.||++|.|++++.|..                    .+.||+++.|+++
T Consensus       292 ~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~--------------------~~~ig~~~~Ig~~  350 (459)
T 4fce_A          292 RVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRP--------------------GAELAEGAHVGNF  350 (459)
T ss_dssp             TCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECT--------------------TCEECTTCEEEEE
T ss_pred             CCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECC--------------------CcEECCCcEECCC
Confidence            99999999998 59999999999999999999999999999999974                    8999999999999


Q ss_pred             cEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEE
Q 024191          156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRL  228 (271)
Q Consensus       156 ~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i  228 (271)
                      +.+.     ++.+++++.+++.+.+ .++.||++|+++.++.+..       +++||++|+||++++|.++++||++++|
T Consensus       351 ~~i~-----~~~i~~~~~i~~~~~i-~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~i  424 (459)
T 4fce_A          351 VEIK-----KARLGKGSKAGHLSYL-GDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATI  424 (459)
T ss_dssp             EEEE-----EEEECTTCEEEEEEEE-EEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEE
T ss_pred             eEEe-----eeEEcCCCEECCceEE-CCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEE
Confidence            9985     5889999999888877 4678888888888777654       7999999999999999999999999999


Q ss_pred             cCCcEEeccCCCCCeEEcCCCchh-hHHHHH
Q 024191          229 AANSCVFKDITEPGDYGGFPAVPI-HEWRRQ  258 (271)
Q Consensus       229 ~~~s~v~~~~~~~~~~~g~p~~~i-~~~~~~  258 (271)
                      +++|+|++|+|+++++.|+|++.+ +.|++.
T Consensus       425 gagsvV~~~v~~~~~~~G~p~~~~~~~~~~~  455 (459)
T 4fce_A          425 GAGTTVTRDVAENELVISRVKQVHIQGWKRP  455 (459)
T ss_dssp             CTTCEECSCBCTTCEECCCCCCCCCTTC---
T ss_pred             CCCCEEccccCCCCEEEecccccchhhhhhh
Confidence            999999999999999999877654 445443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.94  E-value=3.5e-26  Score=196.48  Aligned_cols=206  Identities=26%  Similarity=0.298  Sum_probs=163.2

Q ss_pred             hcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-------------cce
Q 024191           40 QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNC  106 (271)
Q Consensus        40 ~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-------------~~~  106 (271)
                      ...+.+++.|++++.|++++.|+++|+|++++.||+++.|+++++|.+++.||++|.|++++.|             ..+
T Consensus        22 ~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v  101 (283)
T 4eqy_A           22 MSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRL  101 (283)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEE
T ss_pred             CcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceE
Confidence            3456677777778888888888888888888888888888888888888888888999888888             378


Q ss_pred             EECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEE
Q 024191          107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI  186 (271)
Q Consensus       107 ~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~i  186 (271)
                      .||+++.|++++.|......             ..+.+.||+++.|+.++++.    +++.||+++.+++++.+..++.|
T Consensus       102 ~IG~~~~Ig~~~~I~~g~~~-------------~~~~~~IG~~~~I~~~~~I~----~~~~IG~~v~i~~~~~i~~~v~I  164 (283)
T 4eqy_A          102 VIGDRNTIREFTTIHTGTVQ-------------DAGVTTLGDDNWIMAYVHIG----HDCRVGSHVVLSSNAQMAGHVEI  164 (283)
T ss_dssp             EECSSCEECTTEEEECCCTT-------------TTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEE
T ss_pred             EECCCcccCcceeEccceec-------------CCCceEECCCcEECceeEEc----CCcEECCCcEECCCceEcCCcEE
Confidence            89999999999999642100             00259999999999999997    67999999999999999999999


Q ss_pred             CCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc-EEeccCCCCCe-EEcCCCchhhHHHHHHHHhhc
Q 024191          187 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS-CVFKDITEPGD-YGGFPAVPIHEWRRQVANQIR  264 (271)
Q Consensus       187 g~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s-~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r  264 (271)
                      |++++|+.++.+.++++||+++.|+++++|.++  +++++++.+.. .+. .+....+ ..+.+...+..+.++++.+.+
T Consensus       165 gd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~d--vp~~~~~~G~pa~~~-~~n~~gl~r~~~~~~~~~~l~~~~~~~~~  241 (283)
T 4eqy_A          165 GDWAIVGGMSGVHQYVRIGAHSMLGGASALVQD--IPPFVIAAGNKAEPH-GINVEGLRRRGFSPDAISALRSAYRILYK  241 (283)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETBTTEEE-EECHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEecCCEEcCCeEECCCcEECCCCeEecc--cCCCcEEeccCcEEe-ecccccceecCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999985  67888876543 222 1110011 136777777777777777665


Q ss_pred             c
Q 024191          265 S  265 (271)
Q Consensus       265 ~  265 (271)
                      .
T Consensus       242 ~  242 (283)
T 4eqy_A          242 N  242 (283)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.94  E-value=1.3e-25  Score=191.34  Aligned_cols=206  Identities=24%  Similarity=0.316  Sum_probs=162.9

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-------------cceE
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCI  107 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-------------~~~~  107 (271)
                      ..+++++.|++++.|++++.|+++++|++++.||+++.|+++++|.+++.||++|.|++++.|             .++.
T Consensus         8 ~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~   87 (265)
T 4e6u_A            8 DLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLE   87 (265)
T ss_dssp             CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEE
T ss_pred             CeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEE
Confidence            445667777777888888888888888888888888888888888888888888888888888             4789


Q ss_pred             ECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEEC
Q 024191          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIG  187 (271)
Q Consensus       108 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig  187 (271)
                      ||+++.|++++.|.....             .....+.||+++.|++++++.    +++.||+++.+++++.+..++.||
T Consensus        88 IG~~~~Ig~~~~I~~g~~-------------~~~~~~~IG~~~~I~~~~~I~----~~~~Ig~~~~i~~~~~i~~~v~Ig  150 (265)
T 4e6u_A           88 IGNNNLIREHCSLHRGTV-------------QDNALTKIGSHNLLMVNTHIA----HDCIVGDHNIFANNVGVAGHVHIG  150 (265)
T ss_dssp             ECSSCEECTTCEEECCCT-------------TTTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEEC
T ss_pred             ECCCeEECCceEECcccc-------------cCCCceEEccCcEEeeeeEEc----ccEEECCCcEEcCCcEECCCcEEC
Confidence            999999999999963210             001269999999999999996    679999999999999999999999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhcc
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRS  265 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r~  265 (271)
                      ++++|+.++.+.++++||+++.|+++++|.++  +++++++.+...-...+....+ ..+++...+..+.++++.+.+.
T Consensus       151 d~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~d--vp~~~~~~G~pa~~~~~~~~g~~r~~~~~~~~~~l~~~~~~~~~~  227 (265)
T 4e6u_A          151 DHVIVGGNSGIHQFCKIDSYSMIGGASLILKD--VPAYVMASGNPAHAFGINIEGMRRKGWSKNTIQGLREAYKLIFKS  227 (265)
T ss_dssp             SSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEEETTEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHTS
T ss_pred             CCeEEcCCCEECCCcEECCCCEEcCCCEEccc--CCCCeEEEccCCEEeccccccceecCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999985  6888888765432221111111 2356777777777777766543

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.94  E-value=4.7e-26  Score=184.87  Aligned_cols=68  Identities=21%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhhcccc
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK  267 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r~~~  267 (271)
                      .+++||++|+||.+++|.++++||++++|+++++|.+|+|++++++|+||+.++.+.+..+.+++..+
T Consensus       101 ~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PAk~i~~~~~~~~~~~~~~~  168 (192)
T 3mqg_A          101 RDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDLPLR  168 (192)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEBCTTSCBCSCCSS
T ss_pred             CCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEEEccCCEEEEeecccccccccccc
Confidence            56899999999999999999999999999999999999999999999999999987776666655443

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.94  E-value=3.3e-26  Score=205.79  Aligned_cols=202  Identities=18%  Similarity=0.215  Sum_probs=139.8

Q ss_pred             eeEEeeccccHHHHHHHHhhhccCCCCCchhhh---hhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCC
Q 024191            6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQ---FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSG   82 (271)
Q Consensus         6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~   82 (271)
                      .++.+.. +++|.++.+++++..++..++....   ....+.+.+.+.+++.+++++.|++++.|.+++.||+++.|+++
T Consensus       196 ~v~~~~~-~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~  274 (401)
T 2ggo_A          196 RVKVIEY-EGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPN  274 (401)
T ss_dssp             CEEEEEC-CSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSS
T ss_pred             cEEEEEe-cceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCC
Confidence            3566666 6688888888888776655443221   11233444555555555666666666666666666777777777


Q ss_pred             CEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCC
Q 024191           83 TVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (271)
Q Consensus        83 ~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~  162 (271)
                      +.|.+++.||++|.|++++.|.+++|++++.|++++.+.                     +++||+++.|++++.+....
T Consensus       275 ~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~---------------------~~~Ig~~~~Ig~~~~i~~~~  333 (401)
T 2ggo_A          275 SYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVG---------------------DSVIAEDVNFGAGTLIANLR  333 (401)
T ss_dssp             CEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEE---------------------SCEECTTCEECTTCEECCSC
T ss_pred             CEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEc---------------------ceEECCCcEECCCcEEcCcc
Confidence            777666777777777777777777777777777777774                     67777777777777664321


Q ss_pred             cCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC
Q 024191          163 WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG  242 (271)
Q Consensus       163 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~  242 (271)
                      +...              .+++.+++++.+...  ...+++||++|+||++++|.++++||++++|+++++|.+|+|+++
T Consensus       334 ~~~~--------------~~~~~i~~~~~~~~~--~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~  397 (401)
T 2ggo_A          334 FDEK--------------EVKVNVKGKRISSGR--RKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGE  397 (401)
T ss_dssp             TTCS--------------CCEEEETTEEEECSC--SSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTC
T ss_pred             cCCC--------------ceeEEECCceEEecc--cccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccccCCCc
Confidence            1100              245566666555433  345799999999999999999999999999999999999999999


Q ss_pred             eEE
Q 024191          243 DYG  245 (271)
Q Consensus       243 ~~~  245 (271)
                      ++.
T Consensus       398 ~v~  400 (401)
T 2ggo_A          398 FFK  400 (401)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            763

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.93  E-value=1.5e-24  Score=184.98  Aligned_cols=204  Identities=19%  Similarity=0.197  Sum_probs=173.4

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-------------cceEEC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIG  109 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-------------~~~~Ig  109 (271)
                      +++++.|++++.|++++.|+++|.|++++.||+++.|+++++|.+++.||++|.|++++.|             ..+.||
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG   83 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   83 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence            5678889999999999999999999999999999999999999999999999999999999             578999


Q ss_pred             CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  189 (271)
Q Consensus       110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~  189 (271)
                      +++.|++++.|......             ....+.||+++.|++++++.    +++.||+++++++++.+.+++.||++
T Consensus        84 ~~~~I~~~~~I~~~~~~-------------~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~I~~~~~i~~~v~Igd~  146 (270)
T 1j2z_A           84 EDNLIREFCMINPGTEG-------------GIKKTLIGDKNLLMAYVHVA----HDCVIGSHCILANGVTLAGHIEIGDY  146 (270)
T ss_dssp             SSCEECTTCEECCCCTT-------------TTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECSS
T ss_pred             CCCEECCCeEEcCCeec-------------CCccEEECCCcEECcccccC----CCcEECCCcEEcCCccccCccEECCC
Confidence            99999999999742100             00269999999999999997    68999999999999999999999999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhhcc
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRS  265 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r~  265 (271)
                      ++|+.++.+.++++||+++.|+++++|.++  +++++++.+.......+....+..++|...+..+.++++.+.|.
T Consensus       147 ~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~d--vp~~~~~~G~pa~~~~~n~~g~r~~~~~~~~~~~~~~~~~~~~~  220 (270)
T 1j2z_A          147 VNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVEGNRAFIRGLNRHRMRQLLESKDIDFIYALYKRLFRP  220 (270)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETTBTEEEEECHHHHHHHSCHHHHHHHHHHHHHHTCS
T ss_pred             eEEecCCEECCCcEeCCceEEecCcEeccc--CCCCeEEecCCcEEecccchhhhcCCCHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999986  67888886543322222111124578888888888888887653

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.93  E-value=1.3e-24  Score=185.18  Aligned_cols=203  Identities=21%  Similarity=0.252  Sum_probs=167.6

Q ss_pred             ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE--------------cceE
Q 024191           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL--------------SNCI  107 (271)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I--------------~~~~  107 (271)
                      .+++++.|++++.|++++.|+++|+|++++.||+++.|+++++|.+++.||++|.|++++.|              ..+.
T Consensus         6 ~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~   85 (266)
T 3r0s_A            6 KIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVV   85 (266)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEE
Confidence            35678899999999999999999999999999999999999999999999999999999999              5899


Q ss_pred             ECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEEC
Q 024191          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIG  187 (271)
Q Consensus       108 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig  187 (271)
                      ||+++.|++++.|.....             ...+.+.||+++.|++++++.    +++.||+++.+++++.+..++.||
T Consensus        86 IG~~~~Ig~~~~I~~~~~-------------~~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Ig  148 (266)
T 3r0s_A           86 IGKNATIREFATINSGTA-------------KGDGFTRIGDNAFIMAYCHIA----HDCLLGNNIILANNATLAGHVELG  148 (266)
T ss_dssp             ECTTCEECTTCEEECCCT-------------TTTSEEEECTTCEECTTCEEC----TTCEECSSCEECTTCEECTTCEEC
T ss_pred             ECCCCEECCceEecCCcc-------------cCCccEEECCCceeCCcceEc----cccccCCCeEECCCceecCCeEEC
Confidence            999999999999964210             001259999999999999997    679999999999999999999999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEeccCCCCCeEEcCCCchhhHHHHHHHHhhc
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDITEPGDYGGFPAVPIHEWRRQVANQIR  264 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r  264 (271)
                      ++++|+.++.+.++++||+++.|+++++|.++  +++++++.+. +.+. .+..-.+..-++...+..++++++.+.|
T Consensus       149 d~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~d--vp~~~~~~G~Pa~~~-~~n~~g~~r~~~~~~~~~l~~~~~~l~~  223 (266)
T 3r0s_A          149 DFTVVGGLTPIHQFVKVGEGCMIAGASALSQD--IVPFCLAEGNRASIR-SLNLVGIRRRFDKDEVDRLSRAFKTLFR  223 (266)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSSCBBCSC--BCTTEEEEEBTEEEE-EECHHHHHHHSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEccCCEECCCcEECCCCEEccCCeEecc--cCCCeEEeccCcEEe-ecchhheeecCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999985  7888888653 3331 0110000111444556666666666554

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.93  E-value=4e-24  Score=181.45  Aligned_cols=204  Identities=16%  Similarity=0.239  Sum_probs=171.3

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE--------------cceEE
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL--------------SNCII  108 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I--------------~~~~I  108 (271)
                      +++++.|++++.|++++.|+++|.|++++.||+++.|+++++|.+++.||+++.|++++.|              ..+.|
T Consensus         3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~I   82 (259)
T 3hsq_A            3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVI   82 (259)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEE
T ss_pred             cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEE
Confidence            4567889999999999999999999999999999999999999999999999999999998              57899


Q ss_pred             CCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECC
Q 024191          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGK  188 (271)
Q Consensus       109 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~  188 (271)
                      |+++.|++++.|.....              ....+.||+++.|+.++++.    +++.||+++.+++++.+.+++.||+
T Consensus        83 G~~~~Ig~~~~I~~~~~--------------~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd  144 (259)
T 3hsq_A           83 GDHNIFREYSNIHKGTK--------------EDSPTVIGNKNYFMGNSHVG----HDCILGNNNILTHGAVLAGHVTLGN  144 (259)
T ss_dssp             CSSCEECTTCEEECCSB--------------TTBCEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECS
T ss_pred             CCCcEECCCCEECCCcc--------------CCCcEEECCCcEEcCCcEEC----CCcEECCccEEcCCceECCccEECC
Confidence            99999999999964221              01379999999999999997    6899999999999999999999999


Q ss_pred             CCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHHhhccc
Q 024191          189 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRSS  266 (271)
Q Consensus       189 ~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~~~r~~  266 (271)
                      +++|+.++.+.++++||+++.|+++++|.++  +++++++.+...-...+.... ...+++...+..|++.++.+.|..
T Consensus       145 ~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~d--vp~~~~~~G~pa~~~~~~~~g~~r~~~~~~~~~~l~~~~~~~~~~~  221 (259)
T 3hsq_A          145 FAFISGLVAVHQFCFVGDYSMVAGLAKVVQD--VPPYSTVDGNPSTVVGLNSVGMKRAGFSPEVRNAIKHAYKVIYHSG  221 (259)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECSB--BCTTEEEETTTTEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHSSS
T ss_pred             CcEEeCCCEECCCCEECCCCEECCCCEEccc--CCCCcEEeccCcEEEeecccceeeCCCCHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999974  688888865432111111111 124577777888888877776653

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.93  E-value=1.9e-24  Score=191.26  Aligned_cols=172  Identities=20%  Similarity=0.334  Sum_probs=126.9

Q ss_pred             cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCce
Q 024191           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG  126 (271)
Q Consensus        47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~  126 (271)
                      ..|++++.|++++.|++++.|+++++|++++.||++|+|+++++|++++.||++           |.|++++.|+.    
T Consensus       103 ~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~-----------~~I~~~~~I~~----  167 (357)
T 4e79_A          103 TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKD-----------CFIDSYVTITG----  167 (357)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS-----------CEECTTCEECT----
T ss_pred             CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC-----------CEECCCcEEec----
Confidence            356666666666666666666666666666666666666555555555555544           44444444432    


Q ss_pred             eEEccCCceecCCceeceEECCCcEECCccEEeCC---------------CcCCeEECCCcEECCCcEEc----cccEEC
Q 024191          127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG---------------SWRDTVIGDHSKIDNLVQIG----HNVAIG  187 (271)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~---------------~~~~~~ig~~~~i~~~~~i~----~~~~ig  187 (271)
                                      ++.||++|.|++++++...               ....+.||+++.|+.+++|.    +++.|+
T Consensus       168 ----------------~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig  231 (357)
T 4e79_A          168 ----------------SSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILE  231 (357)
T ss_dssp             ----------------TCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEEC
T ss_pred             ----------------ccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCcccc
Confidence                            4445555555555555321               11378999999999999997    789999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCC
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPA  249 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~  249 (271)
                      +++.+++++.+.++++||++|+|++++.|.++++||++++|++++.|.  .++++++.+.|.|.
T Consensus       232 ~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~  295 (357)
T 4e79_A          232 DGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM  295 (357)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred             CCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence            999999999999999999999999999999999999999999999999  47899999887554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.93  E-value=5.2e-24  Score=187.47  Aligned_cols=171  Identities=22%  Similarity=0.357  Sum_probs=126.5

Q ss_pred             cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCce
Q 024191           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG  126 (271)
Q Consensus        47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~  126 (271)
                      +.|++++.|++++.|++++.|+++++|++++.||++|+|+++++|++++.||           ++|.|++++.|+.    
T Consensus        98 ~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG-----------~~~~I~~~~~I~~----  162 (341)
T 3eh0_A           98 QNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIG-----------AGSRLWANVTIYH----  162 (341)
T ss_dssp             CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC-----------TTCEECSSCEECT----
T ss_pred             CccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEEC-----------CCcEECCCcEECC----
Confidence            4466666666666666666666666666666666666655555555555544           4444555555532    


Q ss_pred             eEEccCCceecCCceeceEECCCcEECCccEEeCC---------------CcCCeEECCCcEECCCcEEc----cccEEC
Q 024191          127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG---------------SWRDTVIGDHSKIDNLVQIG----HNVAIG  187 (271)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~---------------~~~~~~ig~~~~i~~~~~i~----~~~~ig  187 (271)
                                      ++.||++|.|++++.+...               ....+.||+++.|+.++++.    +++.|+
T Consensus       163 ----------------~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig  226 (341)
T 3eh0_A          163 ----------------EIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIG  226 (341)
T ss_dssp             ----------------TCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEEC
T ss_pred             ----------------CCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCceEec
Confidence                            5555555555555555331               11468999999999999996    689999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCC
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFP  248 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p  248 (271)
                      +++.++.++.+.+++.||++|+|++++.+.++++||++++|++++.|.+  ++++++.+.+.+
T Consensus       227 ~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s  289 (341)
T 3eh0_A          227 NGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMG  289 (341)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTC
T ss_pred             cceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCC
Confidence            9999999999999999999999999999999999999999999999998  788999876654

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.92  E-value=8e-24  Score=179.85  Aligned_cols=203  Identities=20%  Similarity=0.242  Sum_probs=152.9

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEEC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG  109 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig  109 (271)
                      +.+++.|++++.|++++.|++++.|++++.||+++.|+++++|.+++.||++|.|++++.|.             .+.||
T Consensus         8 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG   87 (262)
T 2qia_A            8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG   87 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEEC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEEC
Confidence            34445555555555566666666666666666666666666666667777777777777773             58899


Q ss_pred             CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  189 (271)
Q Consensus       110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~  189 (271)
                      +++.|++++.|......    .         ...+.||+++.|++++++.    +++.||+++.+++++.+.+++.|+++
T Consensus        88 ~~~~Ig~~~~I~~~~~~----~---------~~~~~IG~~~~Ig~~~~I~----~~~~Ig~~~~i~~~~~i~~~v~Ig~~  150 (262)
T 2qia_A           88 DRNRIRESVTIHRGTVQ----G---------GGLTKVGSDNLLMINAHIA----HDCTVGNRCILANNATLAGHVSVDDF  150 (262)
T ss_dssp             SSCEECTTCEEECCCTT----T---------TSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CCceeCCCCEEcCCccC----C---------CCcCEECCCcEEeeeeEEC----CCCEECCCeEECCcccccCCcEECCC
Confidence            99999999998642100    0         0269999999999999997    67999999999999999999999999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHHhhc
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIR  264 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~~~r  264 (271)
                      ++|+.++.+.++++||+++.|+++++|.++  +++++++.+.......+.... ...++|...+..|.+.+..+.|
T Consensus       151 ~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~  224 (262)
T 2qia_A          151 AIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYR  224 (262)
T ss_dssp             CEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEBTEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             cEEccCCEECCCCEECCCCEEccCCEECCc--CCCCeEEeccCceEecccccccEecCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999985  678888766544332222111 2357888888888777776654

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.92  E-value=4.1e-23  Score=176.44  Aligned_cols=167  Identities=28%  Similarity=0.387  Sum_probs=132.7

Q ss_pred             EECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-c--------------eEECCCcEECCCC
Q 024191           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-N--------------CIIGDSCIIHNGV  118 (271)
Q Consensus        54 ~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-~--------------~~Ig~~~~I~~~~  118 (271)
                      .|++++.|++++.|++++.|++++.|+++|+|++++.||++|.|+++|.|. .              +.||+++.|++++
T Consensus         4 ~i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~   83 (273)
T 3fs8_A            4 NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTEN   83 (273)
T ss_dssp             EECTTCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTC
T ss_pred             ccCCCeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCC
Confidence            344455555555555556666666666666666666677777777777663 2              8999999999999


Q ss_pred             EECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee
Q 024191          119 CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI  198 (271)
Q Consensus       119 ~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  198 (271)
                      .|..                    .+.||+++.|+.++.|.    .++.||+++.++.++.+.+++.||+++.|+.++.+
T Consensus        84 ~i~~--------------------~~~Ig~~~~Ig~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I  139 (273)
T 3fs8_A           84 VIYG--------------------DTIIGDNFQTGHKVTIR----ENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFV  139 (273)
T ss_dssp             EEES--------------------SCEECTTCEECSSCEEC----SSCEECSSCEECTTCEECSSCEECSSCEECTTCEE
T ss_pred             EEeC--------------------CCEECCCCEECCceEEC----CCCEECCCCEECccceeCCceEECCceEECCCCEE
Confidence            9963                    88999999999999997    46899999999999999999999999999999999


Q ss_pred             ccCcEECCCcEEccccEECC----------CCEECCCcEEcCCcEEeccC--CCCCeE
Q 024191          199 AGSATIGDYVTLGGRVAVRD----------HVSIASKVRLAANSCVFKDI--TEPGDY  244 (271)
Q Consensus       199 ~~~v~Ig~~~~Ig~~~~i~~----------~~~ig~~~~i~~~s~v~~~~--~~~~~~  244 (271)
                      ..++.|+++++++.++.+..          +++|++++.|++++.+...+  .+++.+
T Consensus       140 ~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~I  197 (273)
T 3fs8_A          140 GEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALV  197 (273)
T ss_dssp             CTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCCceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEE
Confidence            99999999999999888876          68888888888888887643  445543

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.92  E-value=3.5e-23  Score=183.89  Aligned_cols=172  Identities=24%  Similarity=0.307  Sum_probs=129.1

Q ss_pred             cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCce
Q 024191           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG  126 (271)
Q Consensus        47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~  126 (271)
                      ..|++++.|.+++.|++++.|+++++|++++.||++|+|.++++|++++.||++|.|           ++++.|+.    
T Consensus       120 ~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I-----------~~~~~I~~----  184 (372)
T 3pmo_A          120 AGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWL-----------APRVTLYH----  184 (372)
T ss_dssp             SEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE-----------CTTCEECT----
T ss_pred             cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCccc-----------CCCcEEEe----
Confidence            457777777777777777777777777777777776666666666666665555554           44444432    


Q ss_pred             eEEccCCceecCCceeceEECCCcEECCccEEeCC---------------CcCCeEECCCcEECCCcEEc----cccEEC
Q 024191          127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG---------------SWRDTVIGDHSKIDNLVQIG----HNVAIG  187 (271)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~---------------~~~~~~ig~~~~i~~~~~i~----~~~~ig  187 (271)
                                      .+.||++|.|++++.|...               ...++.||+++.|+.++++.    +++.||
T Consensus       185 ----------------~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG  248 (372)
T 3pmo_A          185 ----------------DVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIG  248 (372)
T ss_dssp             ----------------TEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEEC
T ss_pred             ----------------eeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEEC
Confidence                            4444444444444444321               11368999999999999987    789999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcCCC
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPA  249 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~p~  249 (271)
                      +++.++.++.+..+++||++|+|++++.|.++++||++++|++++.|.+.  +++++++.+.+.
T Consensus       249 ~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~  312 (372)
T 3pmo_A          249 NGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM  312 (372)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE
Confidence            99999999999999999999999999999999999999999999999985  788988876554

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.92  E-value=4.1e-23  Score=179.14  Aligned_cols=218  Identities=15%  Similarity=0.188  Sum_probs=120.8

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECC----ccEE-cceEECCCcEEC
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGF----NVAL-SNCIIGDSCIIH  115 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~----~~~I-~~~~Ig~~~~I~  115 (271)
                      +.+.+.+.|++++.|++++.|+++++|++++.|++++.|..++.|++++.|++++.|+.    ++.| .++.|++++.|+
T Consensus        14 A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig   93 (305)
T 3t57_A           14 AVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVG   93 (305)
T ss_dssp             SEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEE
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeC
Confidence            34444555555555555555555555555555555555544555554555555454443    3444 455666666664


Q ss_pred             CCCEE---CCCCceeEEccCCceecCCc-e-------eceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191          116 NGVCI---GQDGFGFFVDEHGNMLKKPQ-L-------LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  184 (271)
Q Consensus       116 ~~~~i---~~~~~~~~~~~~~~~~~~~~-~-------~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~  184 (271)
                      ....-   .......+.+.++....... .       ..+.||+++.|+.++++.    +++.||+++.+.+++.+..++
T Consensus        94 ~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~g~v  169 (305)
T 3t57_A           94 VKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIA----HDCKIGDRNIFANNTLLAGHV  169 (305)
T ss_dssp             ECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTC
T ss_pred             ccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEe----CceEeCCceEECCCcccCCCC
Confidence            32210   00111223444444444322 2       135666666666666665    567777777777777777777


Q ss_pred             EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhh
Q 024191          185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQI  263 (271)
Q Consensus       185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~  263 (271)
                      .||++++|+.++.+.++++||+++.|+++++|.++  +++++++++...-.+.+....+ ..++++..+..+.++++.++
T Consensus       170 ~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~d--vp~~~~~~G~Pa~~~~~n~~g~~r~~~~~~~~~~l~~~y~~~~  247 (305)
T 3t57_A          170 VVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQD--VPKYMMVAGERAELRGLNLEGLRRNGFTMSEMKSLRAAYRKIF  247 (305)
T ss_dssp             EECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETTBTEEEEECHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             EECCceEEcCCCEEcCCeEECCCCEEcCCCeEccc--CCCCeEEecCCcEEeccchhheeecCCCHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777765  5667666544322222221111 23566666666677776666


Q ss_pred             c
Q 024191          264 R  264 (271)
Q Consensus       264 r  264 (271)
                      |
T Consensus       248 ~  248 (305)
T 3t57_A          248 M  248 (305)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.91  E-value=8e-24  Score=195.60  Aligned_cols=179  Identities=22%  Similarity=0.317  Sum_probs=136.1

Q ss_pred             cEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccE-----EcceEECCCcEECCCCEECCCCcee
Q 024191           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA-----LSNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        53 ~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~-----I~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      +++.+.+.|++++.|++++++.+++.|+++|+|++++.+.+ +.++.++.     +..+.+++++.+++.+.+..     
T Consensus       278 ~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~-~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~-----  351 (501)
T 3st8_A          278 TWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTD-VAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRP-----  351 (501)
T ss_dssp             EEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEE-EEECTTCEECSEEEEEEEECTTCEECSSEEECT-----
T ss_pred             ccccCceEECCcceecceeeecCccccccceEEeeceeecC-ceEecCCEEEeecccccccccccccCCceeecC-----
Confidence            44555666666666666666666666666666665555532 33333333     45677889999999999885     


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee------cc-
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI------AG-  200 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i------~~-  200 (271)
                                     +++|++++.|+.++.+.     ++.||+++++++.+.+ .++.||++|.||.++.+      .+ 
T Consensus       352 ---------------~~~i~~~v~IG~~v~ik-----~s~Ig~gskI~~~~~i-~d~~Ig~~v~IG~g~i~~n~dg~~~~  410 (501)
T 3st8_A          352 ---------------GTALGADGKLGAFVEVK-----NSTIGTGTKVPHLTYV-GDADIGEYSNIGASSVFVNYDGTSKR  410 (501)
T ss_dssp             ---------------TCEECTTCEEEETEEEE-----SCEECTTCEEEESCEE-ESEEECSSCEECTTCEEECBCSSSBC
T ss_pred             ---------------CcEEccccccCCeEEEc-----cceecCCcEEecccee-cCceEcCCCEECCCEEEEcccCCccc
Confidence                           88999999999999885     6789999999887665 44556666666555544      33 


Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHH
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQ  258 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~  258 (271)
                      .++|||+|+||+++.|.++++||++|+|+++|.|++|+|++++ ++|.|++.++.|.+.
T Consensus       411 ~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~~~~~~~~~~~~w~~~  469 (501)
T 3st8_A          411 RTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIENWVQR  469 (501)
T ss_dssp             CEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTTHHHH
T ss_pred             CCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeEEeccCceeccchhhh
Confidence            4999999999999999999999999999999999999999997 578999999998544

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.91  E-value=4.5e-23  Score=183.75  Aligned_cols=165  Identities=22%  Similarity=0.296  Sum_probs=122.6

Q ss_pred             CCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCc------EECCCCEECCccEEc--------------
Q 024191           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV------TIGQSTNIGFNVALS--------------  104 (271)
Q Consensus        45 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~------~Ig~~~~Ig~~~~I~--------------  104 (271)
                      .+..|++++.|++++.|+++|.|++++.|++++.||++|.|.+++      .||++|.|++++.|.              
T Consensus       141 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~  220 (374)
T 2iu8_A          141 DHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQH  220 (374)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTTEE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCCce
Confidence            334444455555555566666666566666666666666665554      444555555555541              


Q ss_pred             -------ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCC
Q 024191          105 -------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL  177 (271)
Q Consensus       105 -------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~  177 (271)
                             .++||++|.|+++++|....+                ..+.||+++.|...++|.    +++.||+++.+.++
T Consensus       221 ~~i~~~g~v~Ig~~v~IG~~~~I~~~~~----------------~~t~ig~~~~i~~~v~I~----~~v~IG~~~~i~~~  280 (374)
T 2iu8_A          221 KHLKHLGKVIIEDDVEIGANTTIDRGRF----------------KHSVVREGSKIDNLVQIA----HQVEVGQHSMIVAQ  280 (374)
T ss_dssp             EECCCCCCEEECTTCEECTTCEEEECSS----------------SCEEECTTCEECTTCEEC----TTCEECTTCEECTT
T ss_pred             eEeeeeccEEECCCCEECCCcEEccCcc----------------cceeECCCcEECCccccC----CccEECCCCEEccC
Confidence                   377888888888888864332                268899999999998887    67999999999999


Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      +.+.+++.||++|+|++++.+.++++||++|.|++++.|.++  +++++++.+.
T Consensus       281 ~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~--v~~~~~~~G~  332 (374)
T 2iu8_A          281 AGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS--ITSPGIYGGA  332 (374)
T ss_dssp             CEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSC--BCSCEEEEET
T ss_pred             cccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecc--cCCCcEEeCC
Confidence            999999999999999999999999999999999999999987  4566665443

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.89  E-value=2.6e-23  Score=170.40  Aligned_cols=67  Identities=21%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhhc
Q 024191          198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIR  264 (271)
Q Consensus       198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r  264 (271)
                      ..++++||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+||+.++.+.+....+++
T Consensus       131 ~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~~G~Pa~~i~~~~~~~~~~~~  197 (205)
T 3vbi_A          131 KTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARKRKIVELEN  197 (205)
T ss_dssp             EECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCCHHHHHHH
T ss_pred             ccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEEEccCCEEeeechhhhHHHHH
Confidence            3567999999999999999999999999999999999999999999999999999986544444433

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.89  E-value=2.2e-22  Score=168.87  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=53.0

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHH
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ  258 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~  258 (271)
                      .+++||++|+||.+++|.++++||++++|+++++|.+++|+++++.|+||+.++.+.+.
T Consensus       164 ~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v~~G~Pak~i~~~~~~  222 (240)
T 3r8y_A          164 KPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIKEIDEK  222 (240)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEEC---
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCcEEEccCCEEEecCCHH
Confidence            46899999999999999999999999999999999999999999999999999876543

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=158.79  Aligned_cols=69  Identities=9%  Similarity=0.191  Sum_probs=42.3

Q ss_pred             eEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe
Q 024191          166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  235 (271)
Q Consensus       166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~  235 (271)
                      +.||+++.++.++.+ +++.|+++++|+.++.+.++++||++|+||++++|.+++.|++++++.+.+...
T Consensus        86 ~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~  154 (194)
T 3tv0_A           86 MIIGTNNVFEVGCYS-QAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLR  154 (194)
T ss_dssp             EEECSSCEECTTCEE-CCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCE
T ss_pred             eEECCcceEecceeE-eeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEE
Confidence            344444444444444 445666666666666666667777777777777777777777776666555443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.87  E-value=8.2e-21  Score=165.52  Aligned_cols=210  Identities=15%  Similarity=0.184  Sum_probs=138.4

Q ss_pred             CCcEEcc-CcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191           45 GGGIFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (271)
Q Consensus        45 ~~~~i~~-~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~  123 (271)
                      .+..|++ ++.+++++.|+++++|++++.|++++.|+++|.|. ++.|++++.|++++.|.++.|++++.|..++.+...
T Consensus        57 ~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~  135 (334)
T 2pig_A           57 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQ  135 (334)
T ss_dssp             SSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred             CceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence            3345666 67777777777777777777788888888888887 777888888888888877777777777766666544


Q ss_pred             Ccee------------EEccCC-ce-----------ecCCceeceEECCCcEECCccEEeCCCc------CCeEEC----
Q 024191          124 GFGF------------FVDEHG-NM-----------LKKPQLLNARIGNHVEIGANSCIDRGSW------RDTVIG----  169 (271)
Q Consensus       124 ~~~~------------~~~~~~-~~-----------~~~~~~~~~~Ig~~~~I~~~~~i~~~~~------~~~~ig----  169 (271)
                      .+-+            ..+.++ ++           .......+++|++++.|++++.+.....      ..+.++    
T Consensus       136 s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~  215 (334)
T 2pig_A          136 SEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHAR  215 (334)
T ss_dssp             CEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEEECTTCEECTTCEEECCSSCCEEECTTCEECTTCE
T ss_pred             EEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCceeccEEECCCcEEeeeEE
Confidence            4311            111111 11           1112233455666666666666654421      112222    


Q ss_pred             --------------CCcEECCCcEEccccEECCCCEEcccceecc-CcEECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191          170 --------------DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV  234 (271)
Q Consensus       170 --------------~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v  234 (271)
                                    .++.++.++.|++++.|++++.|++++.+.+ .+.|++++.||.++.|.+++.|+++++|++++.+
T Consensus       216 V~R~~~~~Ei~~i~~~a~I~~~a~I~~nv~Ig~nv~Ig~~~~ia~g~~~i~~~~vIGg~a~I~g~v~Ig~~~~I~~~s~v  295 (334)
T 2pig_A          216 VIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAV  295 (334)
T ss_dssp             EECCSSTTCCCEECTTCEECTTCEEESSEEECTTEEECTTCEEESSCEEEESSEEECTTCEEESSEEEESSEEECTTCEE
T ss_pred             EeccCCHHHhhhhhhcceecCCEEECCCCEEcCCCEEeCCcEEcCCCeEECCeEEEcCCcEECcCcEECCCcEECCCcEE
Confidence                          2344456777788888888888888888875 7889999999999999999999999999999998


Q ss_pred             ec------cCCCCCeEEcCCCchhhHH
Q 024191          235 FK------DITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       235 ~~------~~~~~~~~~g~p~~~i~~~  255 (271)
                      ..      +++...++.|-|..+-.++
T Consensus       296 ~~~~g~~~~~~g~~~~~g~~~~~~~~~  322 (334)
T 2pig_A          296 IAFDDNTIHLRGPKVINGEDRITRTPL  322 (334)
T ss_dssp             ECCTTCCEEEESSEEECTTCEESCC--
T ss_pred             EEecCCcccccCCcEEcCceeEEecCC
Confidence            62      2333345566665544333

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.86  E-value=7.1e-21  Score=154.54  Aligned_cols=69  Identities=16%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcCCCch
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVP  251 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~p~~~  251 (271)
                      .++.||++++++.++.+. ++.||++++|+.+++|.++++||++|+|+++++|.++  +|++++++|.|++.
T Consensus        84 ~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~  154 (194)
T 3tv0_A           84 KPMIIGTNNVFEVGCYSQ-AMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLR  154 (194)
T ss_dssp             CCEEECSSCEECTTCEEC-CSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCE
T ss_pred             CceEECCcceEecceeEe-eeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEE
Confidence            455566666666665554 4899999999999999999999999999999999998  99999999999964

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.85  E-value=1.3e-20  Score=171.93  Aligned_cols=160  Identities=19%  Similarity=0.271  Sum_probs=119.9

Q ss_pred             ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCccEE-cceEECCCcEEC
Q 024191           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVAL-SNCIIGDSCIIH  115 (271)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~-----~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~  115 (271)
                      .+..++.|++++.|.+++.|++++.|++++.|. ++.||++|.|++++     .||++|.|++++.| .++.|++++.|+
T Consensus       270 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig  348 (459)
T 4fce_A          270 THGRDITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVG  348 (459)
T ss_dssp             EECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred             EECCCcEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEEC
Confidence            344555566665555555566666666555554 25555555555444     56666666776666 367777777777


Q ss_pred             CCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcc-------ccEECC
Q 024191          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH-------NVAIGK  188 (271)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~-------~~~ig~  188 (271)
                      +++.+.                     ++.|++++.+++.+.+.     ++.||+++.++.++.+..       .+.||+
T Consensus       349 ~~~~i~---------------------~~~i~~~~~i~~~~~i~-----~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~  402 (459)
T 4fce_A          349 NFVEIK---------------------KARLGKGSKAGHLSYLG-----DAEIGAGVNIGAGTITCNYDGANKFKTIIGD  402 (459)
T ss_dssp             EEEEEE---------------------EEEECTTCEEEEEEEEE-----EEEECTTCEECTTCEEECBCSSCBCCEEECT
T ss_pred             CCeEEe---------------------eeEEcCCCEECCceEEC-----CeEECCCCEECCCCEEeccccccCCCCEECC
Confidence            777774                     78889999888888874     588999999998888753       799999


Q ss_pred             CCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          189 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       189 ~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      +|||+.++.+.++++||++|+||++++|.++  +++++++.+
T Consensus       403 ~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~--v~~~~~~~G  442 (459)
T 4fce_A          403 DVFVGSDTQLVAPVTVANGATIGAGTTVTRD--VAENELVIS  442 (459)
T ss_dssp             TCEECTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECC
T ss_pred             CeEEcCCCEEcCCcEECCCCEECCCCEEccc--cCCCCEEEe
Confidence            9999999999999999999999999999987  678888876

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.85  E-value=3.8e-21  Score=155.75  Aligned_cols=56  Identities=23%  Similarity=0.227  Sum_probs=48.0

Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHHH
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~~  256 (271)
                      +++||++|+||++++|.+++.||++++|+++++|.  +++|+++++.|+||+.++.+.
T Consensus       112 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~  169 (191)
T 3ixc_A          112 ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMT  169 (191)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             CCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCC
Confidence            37888888888888888888888888898888888  788999999999999888653

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.84  E-value=4.8e-21  Score=155.59  Aligned_cols=120  Identities=25%  Similarity=0.275  Sum_probs=86.0

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|++++.|....                  .++||++|.|++++.|.                      ..
T Consensus        75 ~~v~IG~~~~I~~~~~i~~~~------------------~i~IG~~~~Ig~~~~I~----------------------~~  114 (195)
T 3nz2_A           75 KTIRIGDHTFINMNVVMLDGA------------------PITIGDHVLIGPSTQFY----------------------TA  114 (195)
T ss_dssp             TTEEECTTCEECTTEEEECSS------------------CEEECTTCEECTTCEEE----------------------CE
T ss_pred             CCeEECCCcEECcCCEEecCc------------------eEEECCCCEECCCCEEe----------------------cC
Confidence            366777777777766664211                  45566666666555554                      33


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhh
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQI  263 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~  263 (271)
                      ....+......+..+.++++||++|+||++++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+.+..+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~~~~~~~~~  194 (195)
T 3nz2_A          115 SHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLKDPAESMA  194 (195)
T ss_dssp             ECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEECC-------
T ss_pred             CCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccccCCCcEEEccCCEEecccChHhHHhh
Confidence            33333333444556678899999999999999999999999999999999999999999999999999999877665543

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.84  E-value=7.6e-20  Score=167.45  Aligned_cols=158  Identities=14%  Similarity=0.246  Sum_probs=112.6

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCccEEc-ceEECCCcEECCC
Q 024191           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALS-NCIIGDSCIIHNG  117 (271)
Q Consensus        44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~-----~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~  117 (271)
                      .+++.|++++.|.+++.|+++|+|++++.|+ ++.||++|.|. +     +.||+++.|++++.|. +++|++++.|+++
T Consensus       278 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~  355 (468)
T 1hm9_A          278 APEVQIEANVILKGQTKIGAETVLTNGTYVV-DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNF  355 (468)
T ss_dssp             CTTCEECSSCEEESSCEECTTCEECTTCEEE-SCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEE
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEEe-ccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCC
Confidence            3344444444444555555555555555443 44455555554 3     4566666666666663 6677777777776


Q ss_pred             CEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcc-------ccEECCCC
Q 024191          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH-------NVAIGKSC  190 (271)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~-------~~~ig~~~  190 (271)
                      +.+.                     +++||+++.|+..+.+.     ++.||+++.|+.++.+..       .+.||++|
T Consensus       356 ~~i~---------------------~~~Ig~~~~i~~~~~i~-----~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~  409 (468)
T 1hm9_A          356 VEVK---------------------GSSIGENTKAGHLTYIG-----NCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNV  409 (468)
T ss_dssp             EEEE---------------------SCEECTTCEEEEEEEEE-----SEEECTTCEECTTCEEECBCSSCBCCEEECTTC
T ss_pred             cEEe---------------------eeEEcCCcEeCCceEEc-----cccccCCcEECCCcEEecCcCccCCCcEECCCe
Confidence            6664                     77888888888887773     578888888888888754       79999999


Q ss_pred             EEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       191 ~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      +|+.++.+.++++||+++.|+++++|.++  +++++++.+.
T Consensus       410 ~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~--v~~~~~~~G~  448 (468)
T 1hm9_A          410 FVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIAIGR  448 (468)
T ss_dssp             EECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEECCS
T ss_pred             EECCCCEEeCCcEECCCCEECCCCEECCC--CCCCCEEEcC
Confidence            99999999999999999999999999984  5677777653

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.83  E-value=3.9e-20  Score=168.73  Aligned_cols=155  Identities=19%  Similarity=0.334  Sum_probs=136.4

Q ss_pred             CCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceec
Q 024191           64 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN  143 (271)
Q Consensus        64 ~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  143 (271)
                      .+.|++++.|++++.|+++++|++++.||++|.|++++.|.++.||++|.|++++.|.                     +
T Consensus       259 ~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~---------------------~  317 (456)
T 2v0h_A          259 RFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLE---------------------D  317 (456)
T ss_dssp             GEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEE---------------------E
T ss_pred             ccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEc---------------------c
Confidence            4567777888888888888888888899999999999999999999999999999996                     8


Q ss_pred             eEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECC-----
Q 024191          144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD-----  218 (271)
Q Consensus       144 ~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~-----  218 (271)
                      +.||+++.|++++.+.+    .+.||+++.+++++.+ .++.|++++.++..+.+ +++.||++|+||+++++..     
T Consensus       318 ~~ig~~~~I~~~~~i~~----~~~ig~~~~ig~~~~i-~~~~i~~~~~i~~~~~~-~~~~Ig~~v~Ig~~~~i~~~~~~~  391 (456)
T 2v0h_A          318 SIVGEKAAIGPFSRLRP----GAELAAETHVGNFVEI-KKSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGAN  391 (456)
T ss_dssp             EEECTTCEECSSEEECT----TCEECTTCEEEEEEEE-ESCEECTTCEEEEEEEE-ESEEECTTCEECTTCEEEECSSSS
T ss_pred             CcCCCCcEECCccEECC----CCEECCCCEECCCCEE-eccEECCCCEeccceee-cCcEECCCcEECCceEEecccccc
Confidence            99999999999999974    5899999999999998 47889999988877777 4699999999999999976     


Q ss_pred             --CCEECCCcEEcCCcEEecc--CCCCCeEE
Q 024191          219 --HVSIASKVRLAANSCVFKD--ITEPGDYG  245 (271)
Q Consensus       219 --~~~ig~~~~i~~~s~v~~~--~~~~~~~~  245 (271)
                        +++||++++|++++++.++  +++++.+.
T Consensus       392 ~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig  422 (456)
T 2v0h_A          392 KFKTIIGDDVFVGSDTQLVAPVKVANGATIG  422 (456)
T ss_dssp             CCCEEECSSCEECTTCEEEESEEECTTCEEC
T ss_pred             CCCcEECCCCEECCCCEEcCCcEECCCCEEC
Confidence              8999999999999999987  67777764

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.83  E-value=6.4e-21  Score=160.97  Aligned_cols=146  Identities=21%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             cEECCCCEECCccEE-----cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCc
Q 024191           89 VTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW  163 (271)
Q Consensus        89 ~~Ig~~~~Ig~~~~I-----~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~  163 (271)
                      +.|++++.|...+.+     ..+.||+++.|.+++.|....                  .+.||+++.|++++.+... .
T Consensus        64 v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~------------------~v~IG~~~~Ig~~~~I~~~-~  124 (252)
T 3jqy_B           64 LIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGS------------------KVIIGRRTTIGAGFEVVTD-K  124 (252)
T ss_dssp             EEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSC------------------EEEECTTCEECTTCEEECS-S
T ss_pred             EEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCC------------------EEEECCCCEECCCcEEEeC-C
Confidence            444444444444444     345677777777777764321                  6778888888888777531 0


Q ss_pred             CCeEECCCcEECCCcEEcccc--EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCC
Q 024191          164 RDTVIGDHSKIDNLVQIGHNV--AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEP  241 (271)
Q Consensus       164 ~~~~ig~~~~i~~~~~i~~~~--~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~  241 (271)
                      .++.||+++.|+.++.+....  .+.+. .......+.++++||++|+||++++|.++++||++++|+++++|.+|+|++
T Consensus       125 ~~~~IG~~~~Ig~~~~I~~~~~~~~~~~-~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~  203 (252)
T 3jqy_B          125 CNVTIGHDCMIARDVILRASDGHPIFDI-HSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSM  203 (252)
T ss_dssp             SEEEECTTCEECSSEEEECSCSSCEEET-TTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTT
T ss_pred             CCeEECCCCEEcCCcEEecCCCcccccc-cccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCC
Confidence            134555555555544442210  00000 001123455669999999999999999999999999999999999999999


Q ss_pred             CeEEcCCCchhhH
Q 024191          242 GDYGGFPAVPIHE  254 (271)
Q Consensus       242 ~~~~g~p~~~i~~  254 (271)
                      +++.|.||+.++.
T Consensus       204 ~~~~G~Pa~~i~~  216 (252)
T 3jqy_B          204 CAAAGNPAKIIKR  216 (252)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             CEEEccCCEEEcc
Confidence            9999999999886

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.83  E-value=1.4e-19  Score=149.77  Aligned_cols=108  Identities=27%  Similarity=0.405  Sum_probs=93.8

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .+.||+++.|++++.|.    .++.||+++.+..++.+++++.||++|+|++++.+.++++||++|+||++++|.++++|
T Consensus       111 ~v~IG~g~~I~~~~~i~----~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~I  186 (220)
T 4ea9_A          111 SVRLGEGVAVMAGVAIN----ADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTI  186 (220)
T ss_dssp             TCEECSSCEECTTCEEC----TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             CCEECCCCEEcCCCEEC----CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEE
Confidence            44555555555666665    34688888888888899999999999999999999999999999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++++|+++++|.+|+|+++++.|+||+ ++..
T Consensus       187 g~~~~igagsvv~~~v~~~~~~~G~Pa~-i~~~  218 (220)
T 4ea9_A          187 GADTIVGAGGVVVRDLPDSVLAIGVPAK-IKGD  218 (220)
T ss_dssp             CTTCEECTTCEECSCBCTTCEEETTTTE-ECC-
T ss_pred             CCCCEECCCCEEccccCCCcEEEEeCCE-Eecc
Confidence            9999999999999999999999999999 6543

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.82  E-value=2.1e-19  Score=143.21  Aligned_cols=53  Identities=26%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             cEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhH
Q 024191          202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~  254 (271)
                      ++||++|+||++++|.+++.||++++|+++++|.  +++|+++++.|+||+.++.
T Consensus        91 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~  145 (173)
T 1xhd_A           91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRE  145 (173)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEE
T ss_pred             CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCC
Confidence            4555555555555555566666666666666655  4566666666666665543

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.82  E-value=9e-20  Score=147.05  Aligned_cols=137  Identities=26%  Similarity=0.258  Sum_probs=96.8

Q ss_pred             EECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEE
Q 024191           90 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (271)
Q Consensus        90 ~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~i  168 (271)
                      .|++++.|...+.| .++.||+++.|++++.|..+                 ...+.||++|.|++++.|.....     
T Consensus        17 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~-----------------~~~i~IG~~~~I~~~~~I~~~~~-----   74 (187)
T 3r3r_A           17 GIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGD-----------------VNYVAIGARTNIQDGSVLHVTHK-----   74 (187)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-----------------EEEEEECTTCEECTTCEEECBCC-----
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCcEEEcC-----------------CccEEECCCCEECCCCEEecCCc-----
Confidence            34444444444444 57788888888888887520                 01347777777777777642100     


Q ss_pred             CCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEc
Q 024191          169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGG  246 (271)
Q Consensus       169 g~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g  246 (271)
                            .....-..++.||++++|+.++.+.+ ++||++|+||.+++|.+++.||++++|+++++|.  +++|+++++.|
T Consensus        75 ------~~~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G  147 (187)
T 3r3r_A           75 ------SSSNPHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLG  147 (187)
T ss_dssp             ------BTTBC-CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEET
T ss_pred             ------cccCCCCCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEe
Confidence                  00000134566666666666666654 9999999999999999999999999999999999  89999999999


Q ss_pred             CCCchhhHH
Q 024191          247 FPAVPIHEW  255 (271)
Q Consensus       247 ~p~~~i~~~  255 (271)
                      +||+.++.+
T Consensus       148 ~pa~~i~~~  156 (187)
T 3r3r_A          148 SPVKQIRPL  156 (187)
T ss_dssp             TTTEEEEEC
T ss_pred             cCCeEcCcC
Confidence            999988754

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.81  E-value=2e-19  Score=143.37  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  241 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~  241 (271)
                      ++.||+++.++.++.+ +++.|+++|+|+.++.+.++++||++++|+++++|.++..+++++++ +.++.+.+++++.
T Consensus        73 ~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~~~  149 (173)
T 1xhd_A           73 PLILEDDVTVGHQVIL-HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAE  149 (173)
T ss_dssp             CEEECTTCEECTTCEE-ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHH
T ss_pred             CeEECCCCEECCCCEE-eCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCCHH
Confidence            3444444444444555 45788888888889999999999999999999999999999999999 7778888887743

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.81  E-value=1.5e-19  Score=144.02  Aligned_cols=60  Identities=23%  Similarity=0.312  Sum_probs=42.3

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  241 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~  241 (271)
                      +++.|+++++|+.++.+.++++||++++|+++++|.++..|++++++ +.++.+.+++++.
T Consensus        87 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~~~  147 (173)
T 1v3w_A           87 HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEE  147 (173)
T ss_dssp             ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHH
T ss_pred             CCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCCHH
Confidence            34666666666666666777777788888888887777777777777 5566666666643

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.81  E-value=2.7e-19  Score=144.49  Aligned_cols=136  Identities=23%  Similarity=0.311  Sum_probs=98.4

Q ss_pred             ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191           91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  169 (271)
Q Consensus        91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig  169 (271)
                      |++++.|..++.| .++.||+++.|++++.|..+                 ...+.||++|.|++++.|.....     .
T Consensus        22 ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~-----------------~~~i~IG~~~~I~~~~~I~~~~~-----~   79 (189)
T 3r1w_A           22 LGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGD-----------------MHHIRIGARTSVQDGSVLHITHA-----S   79 (189)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-----------------EEEEEECTTCEECTTCEEECBCC-----S
T ss_pred             ECCCcEECCCCEEeeeeEECCCCEECCCCEEecC-----------------CCceEECCCCEECCCCEEecCCc-----c
Confidence            3444444444444 58888999999988888521                 01568888888888887754210     0


Q ss_pred             CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcC
Q 024191          170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGF  247 (271)
Q Consensus       170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~  247 (271)
                      ..      ....+++.||++|+|+.++.+.+ ++||++|+||++++|.+++.||++++|+++++|.  +++|++++++|+
T Consensus        80 ~~------~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~  152 (189)
T 3r1w_A           80 DY------NPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGT  152 (189)
T ss_dssp             SS------STTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETT
T ss_pred             cC------CCCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECC
Confidence            00      00123556666666666666655 8999999999999999999999999999999999  789999999999


Q ss_pred             CCchhhHH
Q 024191          248 PAVPIHEW  255 (271)
Q Consensus       248 p~~~i~~~  255 (271)
                      ||+.++.+
T Consensus       153 pa~~i~~~  160 (189)
T 3r1w_A          153 PAKKVRPI  160 (189)
T ss_dssp             TTEEEEEC
T ss_pred             ccccccCC
Confidence            99987754

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.80  E-value=2.2e-19  Score=154.88  Aligned_cols=82  Identities=20%  Similarity=0.097  Sum_probs=47.3

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  244 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~  244 (271)
                      ++.||+++.|+.++.|.+++.||++|+|+.++.+.++++|++++.   +..  ....|++++++++++++.+|.      
T Consensus       202 ~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~---g~~--~~~~Ip~~svV~~Gs~v~kd~------  270 (304)
T 3eg4_A          202 PTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRAT---GEV--FYGEVPPYSVVVAGTMPGKNV------  270 (304)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTT---CCE--ECSEECTTEEEEEEEEECCCC------
T ss_pred             CeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccce---eee--ccCEeCCCCEEecCcEecCCC------
Confidence            344444444444455545555566666555555555555555552   121  234688888888888888774      


Q ss_pred             EcCC-------CchhhHHHH
Q 024191          245 GGFP-------AVPIHEWRR  257 (271)
Q Consensus       245 ~g~p-------~~~i~~~~~  257 (271)
                      .|.|       |+.++.++.
T Consensus       271 ~G~P~g~~~~~A~iik~~~~  290 (304)
T 3eg4_A          271 PGENWGPSLYCAVIVKRADE  290 (304)
T ss_dssp             TTSSCCCEEEEEEEEEECCH
T ss_pred             CCCcCcccccceEEEEEccc
Confidence            2455       666665543

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.80  E-value=9.6e-19  Score=141.93  Aligned_cols=106  Identities=23%  Similarity=0.276  Sum_probs=91.4

Q ss_pred             ceEEC--CCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCC
Q 024191          143 NARIG--NHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV  220 (271)
Q Consensus       143 ~~~Ig--~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~  220 (271)
                      .+.||  +++.|++++.|.    .++.||+++.++.++.+++++.||++++|++++.+.++++||++|+||.+++|.+++
T Consensus        87 ~~~Ig~~~g~~I~~~~~I~----~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~  162 (194)
T 3bfp_A           87 SAIVEENAGILIMPYVVIN----AKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNL  162 (194)
T ss_dssp             TCEECTTSCCEECTTCEEC----TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CceeCCCCCcEEcCCCEEC----CCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCC
Confidence            44455  555555555554    346778888888888888999999999999999999999999999999999999999


Q ss_pred             EECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          221 SIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       221 ~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      .||++++|++++++.+|+|+++++.|+||+.+
T Consensus       163 ~Ig~~~~Igagsvv~~~v~~~~~~~G~Pa~~i  194 (194)
T 3bfp_A          163 SLADDSILGGGATLVKNQDEKGVFVGVPAKRM  194 (194)
T ss_dssp             EECTTCEECTTCEECSCBCSCCEECCCCCCCC
T ss_pred             EECCCCEECCCCEEccccCCCCEEEeeccEEC
Confidence            99999999999999999999999999999864

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.80  E-value=8.8e-20  Score=148.60  Aligned_cols=113  Identities=25%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|++++.|....                  .+.||++|.|++++.|..                      .
T Consensus        73 ~~~~IG~~~~I~~~~~i~~~~------------------~v~IG~~v~Ig~~~~I~~----------------------~  112 (199)
T 3ftt_A           73 WNVKLGKNVYVNTNCYFMDGG------------------QITIGDNVFIGPNCGFYT----------------------A  112 (199)
T ss_dssp             TTEEECSSEEECTTEEEECSS------------------CEEECSSEEECTTCEEEC----------------------E
T ss_pred             CCcEECCCeEECCCeEEecCC------------------EEEECCCCEECCCCEEec----------------------C
Confidence            377777777777777774211                  466666666666665542                      1


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~  256 (271)
                      +...+......+..+.++++||++|+||++++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pak~i~~~~  185 (199)
T 3ftt_A          113 THPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKID  185 (199)
T ss_dssp             ECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECC
T ss_pred             CCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcccCCCCEEEEECCEEEeeCC
Confidence            1111112222334456789999999999999999999999999999999999999999999999999998764

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.80  E-value=2.5e-19  Score=144.93  Aligned_cols=112  Identities=23%  Similarity=0.235  Sum_probs=85.1

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|++++.|....                  .+.||++|.|++++.|..                      .
T Consensus        77 ~~v~IG~~~~I~~~~~i~~~~------------------~v~IG~~~~Ig~~~~I~~----------------------~  116 (190)
T 3hjj_A           77 YNIHVGKSFFANFNCVILDVC------------------EVRIGDHCMFAPGVHIYT----------------------A  116 (190)
T ss_dssp             TTEEECTTCEECTTCEEECSS------------------CEEECTTCEECTTCEEEC----------------------E
T ss_pred             CceEECCceeeCCCeEEEeCC------------------CeEECCceEEcCCcEEec----------------------C
Confidence            477777777777777775211                  556666666666665542                      2


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      ....+.........+.++++||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+||+.++++
T Consensus       117 ~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~  188 (190)
T 3hjj_A          117 THPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTI  188 (190)
T ss_dssp             ECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEC
T ss_pred             CccCchhhccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence            222222333344455678999999999999999999999999999999999999999999999999998865

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.79  E-value=1.1e-18  Score=143.60  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=56.7

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  244 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~  244 (271)
                      ++.||+++.|+.++.+..++.||++|+|+.++.+.+ ++||++|+|+++++| .++.|++++.|.+++++.+        
T Consensus       111 ~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~vv~~--------  180 (213)
T 3kwd_A          111 SVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QDVEIPPGKYVPSGMVITT--------  180 (213)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ESCEECTTBEECTTCEECS--------
T ss_pred             ceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CCcEeCCCCEECCCcEEcC--------
Confidence            355566666666666666678888888888888876 888888888888888 5777887777766666643        


Q ss_pred             EcCCCchhhHH
Q 024191          245 GGFPAVPIHEW  255 (271)
Q Consensus       245 ~g~p~~~i~~~  255 (271)
                       |.||+.++++
T Consensus       181 -g~pa~~i~~~  190 (213)
T 3kwd_A          181 -QQQADRLPNV  190 (213)
T ss_dssp             -HHHHTTCCBC
T ss_pred             -CCCccccccC
Confidence             4555555543

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.79  E-value=4.1e-19  Score=149.45  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCC
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT  239 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~  239 (271)
                      ++.||+++.|+.++.+..++.||++|+|+.++.+.+ ++||++|+|+++++| +++.|++++++++++++..+.|
T Consensus       140 ~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-~~~~I~~~~~v~~g~vv~~~~p  212 (247)
T 1qre_A          140 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVTSQAE  212 (247)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ESCEECTTBEECTTCEECSHHH
T ss_pred             ceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-CCeEeCCCCEECCCCEEecCcc
Confidence            456666666666667766788999999999999888 999999999999999 9999999999988888865443

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.78  E-value=1.3e-18  Score=138.64  Aligned_cols=72  Identities=22%  Similarity=0.330  Sum_probs=58.9

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHH
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~  255 (271)
                      ++.||+++.++.++.+. +++||++|+||.++.|.+++.||++++|+++++|.  +++|+++++.|+|++.++.+
T Consensus        71 ~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~  144 (173)
T 1v3w_A           71 PTEIGEYVTIGHNAMVH-GAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQL  144 (173)
T ss_dssp             CEEECSSCEECTTCEEE-SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEEC
T ss_pred             CeEECCCCEECCCCEEC-CCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccC
Confidence            34444444444444443 59999999999999999999999999999999999  68999999999999887754

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.78  E-value=3.3e-18  Score=140.98  Aligned_cols=57  Identities=28%  Similarity=0.410  Sum_probs=53.9

Q ss_pred             eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE-cCCCchhhH
Q 024191          198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-GFPAVPIHE  254 (271)
Q Consensus       198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~-g~p~~~i~~  254 (271)
                      ..++++||++|+||++++|.++++||++++|+++++|.+|+|++++++ |+||+.++.
T Consensus       134 ~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~~i~~aG~Pa~~i~~  191 (215)
T 2wlg_A          134 HGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKE  191 (215)
T ss_dssp             CCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCCSCEEETTTTEEEEC
T ss_pred             CCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCCeEEEcccCCEEECC
Confidence            456799999999999999999999999999999999999999999999 999999886

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.78  E-value=3.3e-19  Score=152.10  Aligned_cols=71  Identities=11%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-EcC-C----------C
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGF-P----------A  249 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~-~g~-p----------~  249 (271)
                      +++.||++|+|+.++.|.++++||++|+||++++|.++++|++++   .+.+...++|+++++ +|+ |          |
T Consensus       176 ~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~---~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A  252 (276)
T 3gos_A          176 NPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRE---TGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCA  252 (276)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETT---TCCEECSEECTTEEEEEEEEECTTSSCEEEEE
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEcccc---ccceeccccCCCcEEECCCccCCCCccccccc
Confidence            467777777777777778888999999999999999999888875   233444456666665 463 6          7


Q ss_pred             chhhHH
Q 024191          250 VPIHEW  255 (271)
Q Consensus       250 ~~i~~~  255 (271)
                      +.++.+
T Consensus       253 ~iik~~  258 (276)
T 3gos_A          253 VIVKKV  258 (276)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            776654

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.78  E-value=1.8e-17  Score=144.45  Aligned_cols=87  Identities=15%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             eceEECCCcEECCccEEeCCCc--------CCeEECCCcEECCCcEEccccEECCCCEEcc-cceeccCcEECCCcEEcc
Q 024191          142 LNARIGNHVEIGANSCIDRGSW--------RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCG-QVGIAGSATIGDYVTLGG  212 (271)
Q Consensus       142 ~~~~Ig~~~~I~~~~~i~~~~~--------~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~-~~~i~~~v~Ig~~~~Ig~  212 (271)
                      .+.+|++++.++.++.+.....        .++.+++++++++++.|++++.|+.++.+.+ .+.|.+.++||.++.|..
T Consensus       200 ~~v~I~~~~~I~g~a~V~R~~~~~Ei~~i~~~a~I~~~a~I~~nv~Ig~nv~Ig~~~~ia~g~~~i~~~~vIGg~a~I~g  279 (334)
T 2pig_A          200 NNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQG  279 (334)
T ss_dssp             CCEEECTTCEECTTCEEECCSSTTCCCEECTTCEECTTCEEESSEEECTTEEECTTCEEESSCEEEESSEEECTTCEEES
T ss_pred             ccEEECCCcEEeeeEEEeccCCHHHhhhhhhcceecCCEEECCCCEEcCCCEEeCCcEEcCCCeEECCeEEEcCCcEECc
Confidence            4667888888888888865432        2577888888888888777777777776664 555566666666665555


Q ss_pred             ccEECCCCEECCCcEE
Q 024191          213 RVAVRDHVSIASKVRL  228 (271)
Q Consensus       213 ~~~i~~~~~ig~~~~i  228 (271)
                      ++.|.+++.|+..+.+
T Consensus       280 ~v~Ig~~~~I~~~s~v  295 (334)
T 2pig_A          280 EILIERQVEISGRAAV  295 (334)
T ss_dssp             SEEEESSEEECTTCEE
T ss_pred             CcEECCCcEECCCcEE
Confidence            5555555555555555

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.78  E-value=5.3e-18  Score=136.66  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  240 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~  240 (271)
                      +++.||++|+|+.++.+.++++||++|+|+++++|.++..+++++++ +.++.+.+++++
T Consensus        99 ~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~~  158 (187)
T 3r3r_A           99 HGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSD  158 (187)
T ss_dssp             ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECCH
T ss_pred             eCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCCH
Confidence            45778888888888888889999999999999999999999999985 556677776663

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.77  E-value=2.3e-18  Score=140.14  Aligned_cols=114  Identities=26%  Similarity=0.252  Sum_probs=86.8

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|+.++.|....                  .+.||++|.|++++.|....                   + 
T Consensus        74 ~~i~IG~~~~I~~~~~i~~~~------------------~i~IG~~v~Ig~~v~I~~~~-------------------h-  115 (203)
T 1krr_A           74 SNIHIGRNFYANFNLTIVDDY------------------TVTIGDNVLIAPNVTLSVTG-------------------H-  115 (203)
T ss_dssp             TTEEECSSCEECSCEEEECSS------------------CEEECSSCEECSSCEEESEE-------------------C-
T ss_pred             CCeEECCeeEECCccEEeccc------------------ceEECCCCEECCCCEEecCC-------------------c-
Confidence            477888888888877775321                  57777777777777665320                   0 


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHH
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  257 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~  257 (271)
                        ..+......+..+.++++||++|+||++++|.++++||++++|+++|+|++|+|++++++|+||+.++.+..
T Consensus       116 --~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~vv~G~PArvik~~~~  187 (203)
T 1krr_A          116 --PVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREIND  187 (203)
T ss_dssp             --CSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCG
T ss_pred             --ccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcEEEccCcEEeccCCh
Confidence              001111122334567899999999999999999999999999999999999999999999999999987743

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.77  E-value=2.4e-19  Score=148.35  Aligned_cols=58  Identities=28%  Similarity=0.358  Sum_probs=54.7

Q ss_pred             eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                      .+.++++||++|+||++++|.++++||++|+|+++|+|.+|+|+++++.|+||+.++.
T Consensus       115 ~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir~  172 (220)
T 4hur_A          115 PLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRK  172 (220)
T ss_dssp             CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             cccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCCCCEeehh
Confidence            3567899999999999999999999999999999999999999999999999999874

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.77  E-value=8.4e-18  Score=135.66  Aligned_cols=73  Identities=22%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc-CCcEEeccCCC
Q 024191          167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITE  240 (271)
Q Consensus       167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~-~~s~v~~~~~~  240 (271)
                      .||+++.++.++.+ +++.||++|+|+.++.+.++++||++|+|+++++|.++..++++++++ .++.+.+++++
T Consensus        89 ~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~~  162 (189)
T 3r1w_A           89 IIGDDVTIGHQAML-HGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITE  162 (189)
T ss_dssp             EECSSEEECTTCEE-ESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECCH
T ss_pred             EECCCCEECCCCEE-eCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCCH
Confidence            33333333334444 347888888888888888999999999999999999999999999984 45667676663

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.77  E-value=3.2e-17  Score=132.58  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=92.2

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      .|++++.|++++.|++++.|.++++|++++.||++|.|++++.|++           ++.||++|.|++++.|..     
T Consensus         5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~-----------~~~IG~~~~I~~~~~I~~-----   68 (192)
T 3mqg_A            5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGN-----------RVRIGNRVKIQNNVSVYD-----   68 (192)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS-----------SCEECSSCEECTTCEECT-----
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECC-----------ceEECCCcEEcCCcEEeC-----
Confidence            3444444444444444444444444444444444444333333333           355666666666666653     


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCC
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDY  207 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~  207 (271)
                                     ++.||+++.|++++.+.........+      ..... ..++.|+++++|+.++.+.++++||++
T Consensus        69 ---------------~~~Ig~~~~ig~~~~~~~~~~~~~~~------~~~~~-~~~~~Ig~~v~IG~~~~I~~g~~Ig~~  126 (192)
T 3mqg_A           69 ---------------NVFLEDDVFCGPSMVFTNVYNPRAAI------ERKSE-YRDTIVRQGATLGANCTVVCGATIGRY  126 (192)
T ss_dssp             ---------------TEEECTTCEECTTCBCCSCSSCBTTB------CCGGG-CCCEEECTTCEECTTCEECTTCEECTT
T ss_pred             ---------------CCEECCCCEECCceEEecccCCcccc------ccccc-cCCcEECCCcEECCCCEECCCCEECCC
Confidence                           67777777777777664321111111      11111 156889999999999999999999999


Q ss_pred             cEEccccEECCCCEECCCcEEc-CCcEEeccCC
Q 024191          208 VTLGGRVAVRDHVSIASKVRLA-ANSCVFKDIT  239 (271)
Q Consensus       208 ~~Ig~~~~i~~~~~ig~~~~i~-~~s~v~~~~~  239 (271)
                      +.|+++++|.++  +++++++. .++.+.+.+.
T Consensus       127 ~~IgagsvV~~~--vp~~~v~~G~PAk~i~~~~  157 (192)
T 3mqg_A          127 AFVGAGAVVNKD--VPDFALVVGVPARQIGWMS  157 (192)
T ss_dssp             CEECTTCEECSC--BCTTEEEETTTTEEEEEBC
T ss_pred             CEEcCCCEECcc--cCCCCEEEccCCEEEEeec
Confidence            999999999975  57777665 4455655544

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.76  E-value=1.8e-18  Score=139.64  Aligned_cols=112  Identities=22%  Similarity=0.243  Sum_probs=83.1

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|+.++.|....                  ...||++|.|++++.|..                      .
T Consensus        75 ~~~~IG~~~~i~~~~~i~~~~------------------~i~IG~~~~Ig~~v~I~~----------------------~  114 (188)
T 3srt_A           75 YNIHVGENFFANYDCIFLDVC------------------KIEIGDNVMLAPNVQIYT----------------------A  114 (188)
T ss_dssp             TTEEECTTEEECTTEEEECSS------------------CEEECSSCEECTTCEEEC----------------------E
T ss_pred             CCeEECCcccccCceEEecCC------------------ceEECCeeEECCCcEEee----------------------C
Confidence            377777777777777775321                  456666666666665542                      1


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      ....+......+..+.++++||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+||+.++++
T Consensus       115 ~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~vi~~i  186 (188)
T 3srt_A          115 YHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVIKKI  186 (188)
T ss_dssp             ECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSCBCSSEEEETTTTEEEEEC
T ss_pred             CccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence            111111111233345678999999999999999999999999999999999999999999999999998765

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.75  E-value=4.4e-19  Score=161.75  Aligned_cols=166  Identities=16%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             eeeEEeeccccHHHHHHHHhhhccCCCCCchhh-hhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCC
Q 024191            5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQ-QFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGT   83 (271)
Q Consensus         5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~   83 (271)
                      .-++.|.+ +++|.++++++++++++..++... ....++++.+.|++++.+.+++.| .++.| .++.|          
T Consensus       267 ~~v~~~~~-~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I-~~~~I----------  333 (451)
T 1yp2_A          267 MRVQAYLY-DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-LDADV-TDSVI----------  333 (451)
T ss_dssp             CCEEEEEC-CSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE-EEEEE-EEEEE----------
T ss_pred             CceEEEEe-CCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE-cceEE-eCeEE----------
Confidence            34777888 889999999999998886665432 222223333334444444333333 23333 22333          


Q ss_pred             EECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCC--------------
Q 024191           84 VVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNH--------------  149 (271)
Q Consensus        84 ~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~--------------  149 (271)
                              |++|.|+. +.|.+++||++|.|++++.|..                    ..+++++              
T Consensus       334 --------g~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~--------------------~~~~~~~~~~~~~~~~~~~~~  384 (451)
T 1yp2_A          334 --------GEGCVIKN-CKIHHSVVGLRSCISEGAIIED--------------------SLLMGADYYETDADRKLLAAK  384 (451)
T ss_dssp             --------CTTCEEEE-EEEESCEECTTCEECTTCEEES--------------------CEECCCSSCCCHHHHHHHHTT
T ss_pred             --------CCCCEEcc-eEEeccEECCCCEECCCCEEcC--------------------ceEECCCCccccccccccccc
Confidence                    33333332 3333444444555555555441                    2222221              


Q ss_pred             ----cEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCC
Q 024191          150 ----VEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK  225 (271)
Q Consensus       150 ----~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~  225 (271)
                          +.|++++.+.                 +++|++++.||+++.+.+++.+.++.+||++++||+++     ++||++
T Consensus       385 g~~~~~Ig~~~~i~-----------------~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~  442 (451)
T 1yp2_A          385 GSVPIGIGKNCHIK-----------------RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKD  442 (451)
T ss_dssp             TCCCSEECTTCEEE-----------------SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTT
T ss_pred             CceeEEECCCCEEe-----------------ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCC
Confidence                3333333221                 13444445555555555554454455777778887776     567777


Q ss_pred             cEEcCCcEE
Q 024191          226 VRLAANSCV  234 (271)
Q Consensus       226 ~~i~~~s~v  234 (271)
                      ++|+++|+|
T Consensus       443 a~i~agsvv  451 (451)
T 1yp2_A          443 ALIPSGIII  451 (451)
T ss_dssp             CEECTTCBC
T ss_pred             cEECCCccC
Confidence            777777653

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.75  E-value=3.7e-17  Score=150.94  Aligned_cols=152  Identities=19%  Similarity=0.278  Sum_probs=104.5

Q ss_pred             EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC---------------cEECCCCEECCccEE-cceEECCCc
Q 024191           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---------------VTIGQSTNIGFNVAL-SNCIIGDSC  112 (271)
Q Consensus        49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~---------------~~Ig~~~~Ig~~~~I-~~~~Ig~~~  112 (271)
                      +...+.|++++.|++++.+.+++.++.++.|++++.+.+.               ..+++++.++.++.+ .++.|++++
T Consensus       280 i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v  359 (501)
T 3st8_A          280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADG  359 (501)
T ss_dssp             ECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTC
T ss_pred             ccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEcccc
Confidence            4444555555555555555555555555555555444321               234555556666665 456666666


Q ss_pred             EECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-------ccccE
Q 024191          113 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVA  185 (271)
Q Consensus       113 ~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-------~~~~~  185 (271)
                      .|++++.+.                     +++||+++.|++.+.+.     ++.||++|.|+.++.+       ++.+.
T Consensus       360 ~IG~~v~ik---------------------~s~Ig~gskI~~~~~i~-----d~~Ig~~v~IG~g~i~~n~dg~~~~~t~  413 (501)
T 3st8_A          360 KLGAFVEVK---------------------NSTIGTGTKVPHLTYVG-----DADIGEYSNIGASSVFVNYDGTSKRRTT  413 (501)
T ss_dssp             EEEETEEEE---------------------SCEECTTCEEEESCEEE-----SEEECSSCEECTTCEEECBCSSSBCCEE
T ss_pred             ccCCeEEEc---------------------cceecCCcEEeccceec-----CceEcCCCEECCCEEEEcccCCcccCCE
Confidence            666666664                     77788888887777774     5777777777777665       23599


Q ss_pred             ECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE
Q 024191          186 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  228 (271)
Q Consensus       186 ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i  228 (271)
                      ||++|.||+++.+.++++||++|+|+++++|.+++  ++++..
T Consensus       414 IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dv--p~~~l~  454 (501)
T 3st8_A          414 VGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDV--PPGALA  454 (501)
T ss_dssp             ECTTCEECTTCEEESSEEECTTCEECTTCEECSCB--CTTCEE
T ss_pred             ECCCcEECCCCEEcCCcEECCCCEECCCCEECccc--CCCCeE
Confidence            99999999999999999999999999999999975  567654

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.74  E-value=6.7e-18  Score=146.07  Aligned_cols=62  Identities=11%  Similarity=0.228  Sum_probs=40.8

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-Ec
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GG  246 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~-~g  246 (271)
                      .++.||++|+|+.++.|.++++||++|+||++++|.+++.|++.+   .+.+...++|+++++ +|
T Consensus       217 ~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~---~~~v~~g~Vp~gsvVvaG  279 (316)
T 3tk8_A          217 NPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRE---TGEVTYGRIPAGSVVVAG  279 (316)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETT---TCCEECSEECTTEEEEEE
T ss_pred             CCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccc---cccccccEeCCCCEEECC
Confidence            356666677777777777778888888888888888877776664   222333355555555 45

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.73  E-value=1.5e-18  Score=142.76  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             EcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       192 i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                      +..+..+.++++||++|+||++++|.++++||++|+|+++|+|.+|+|+++++.|+||+.++.
T Consensus       102 ~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv~G~PAk~i~~  164 (212)
T 3eev_A          102 ARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHIKF  164 (212)
T ss_dssp             CCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             ccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEEec
Confidence            344555678899999999999999999999999999999999999999999999999999886

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.73  E-value=7.6e-17  Score=144.66  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=19.3

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCC
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH  219 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~  219 (271)
                      ++.||++|+|+.++.+.++++||+++.|+++++|.++
T Consensus       356 ~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~  392 (401)
T 2ggo_A          356 GAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD  392 (401)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc
Confidence            3445555555555555555555555555555555543

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.72  E-value=3.6e-17  Score=141.00  Aligned_cols=112  Identities=20%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             CcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCe
Q 024191           88 AVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT  166 (271)
Q Consensus        88 ~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~  166 (271)
                      ++.||++|.|..++.| .++.||++|.|++++.+....            .......++||++|.|++++.|.    .++
T Consensus       158 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~------------~~~~~~~v~IGd~v~IG~~a~I~----~gv  221 (304)
T 3eg4_A          158 GAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVL------------EPMQAGPTIIEDNCFIGARSEVV----EGC  221 (304)
T ss_dssp             TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCC------------SSTTCCCCEECTTCEECTTCEEC----TTC
T ss_pred             CCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCcc------------ccCccCCeEEcCCCEECCCCEEc----CCc
Confidence            3333333333333333 224566666666666664211            00111268888888888888776    346


Q ss_pred             EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCC
Q 024191          167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV  220 (271)
Q Consensus       167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~  220 (271)
                      .||+++.|+.++.+..++.|++++.     .......|++++.+++++++.++.
T Consensus       222 ~IG~~avIgagsvV~~g~~Igd~~~-----g~~~~~~Ip~~svV~~Gs~v~kd~  270 (304)
T 3eg4_A          222 IVREGSVLGMGVFIGKSTKIVDRAT-----GEVFYGEVPPYSVVVAGTMPGKNV  270 (304)
T ss_dssp             EECTTCEECTTCEECTTCCEEETTT-----CCEECSEECTTEEEEEEEEECCCC
T ss_pred             EECCCcEECCCCEEcCCeEECccce-----eeeccCEeCCCCEEecCcEecCCC
Confidence            7777777777777766666666663     123335688888888888887663

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.72  E-value=3.4e-17  Score=131.28  Aligned_cols=110  Identities=25%  Similarity=0.270  Sum_probs=75.7

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ++.||+++.|++++.+...  ..+.||+++.|++++.+.......+...-..+..+.++++||++|+||++++|.++++|
T Consensus        72 ~v~IG~~~~I~~~~~i~~~--~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~I  149 (182)
T 1ocx_A           72 NIFLGNNFFANFDCVMLDV--CPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  149 (182)
T ss_dssp             TEEECSSEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred             CEEECCCcEEeCCeEEEec--cceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEE
Confidence            5667777777766666432  23444544444444444211000000000012233578999999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                      |++++|+++|+|.+|+|+++++.|+||+.+++
T Consensus       150 G~~~vIgagsvV~~dip~~~vv~G~Pa~~i~~  181 (182)
T 1ocx_A          150 GDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             CTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             CCCCEECCCCEECCcCCCCcEEEccccEEecc
Confidence            99999999999999999999999999998864

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.72  E-value=4.9e-18  Score=139.82  Aligned_cols=65  Identities=25%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             EEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       191 ~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      .+.....+.++++||++|+||.+++|.++++||++++|+++++|.+|+|+++++.|+||+.++.+
T Consensus       108 ~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~~G~Pa~~i~~r  172 (219)
T 4e8l_A          108 PSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  172 (219)
T ss_dssp             CCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             cccccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEEEecCCEeeccc
Confidence            33444556678999999999999999999999999999999999999999999999999998864

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.71  E-value=2.5e-17  Score=142.54  Aligned_cols=69  Identities=25%  Similarity=0.424  Sum_probs=37.5

Q ss_pred             ECCCcEECCCcEEccccEECCCCEEcccceecc--------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191          168 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  236 (271)
Q Consensus       168 ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~--------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~  236 (271)
                      ||+++.|..+++|++++.||++|.|++++.+.+        +++||++|+||++++|.+++.||++++|+++++|.+
T Consensus       177 IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~  253 (316)
T 3tk8_A          177 VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQ  253 (316)
T ss_dssp             ECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            333334444444444444444444444444444        566666666666666666666666666666666654

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.71  E-value=6.2e-17  Score=130.12  Aligned_cols=111  Identities=24%  Similarity=0.267  Sum_probs=75.9

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ++.||+++.|..++.+...  .++.||+++.|++++.+.......+......+..+.++++||++|+||++++|.++++|
T Consensus        74 ~v~IG~~~~i~~~~~i~~~--~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~I  151 (185)
T 2p2o_A           74 NIHVGENFFMNFDGVILDV--CEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTI  151 (185)
T ss_dssp             TEEECTTEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEE
T ss_pred             CEEECCeeEEcCCeEEEec--cceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEE
Confidence            5666666666666666432  33444444444444444211000000000112234668999999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++++|+++|+|.+|+|+++++.|+||+.++.+
T Consensus       152 G~~~vIgagsvV~~~vp~~~vv~G~Pa~vi~~i  184 (185)
T 2p2o_A          152 GDNAVIASGAVVTKDVPANAVVGGNPAKVIKWL  184 (185)
T ss_dssp             CTTCEECTTCEECSCBCTTEEEEETTEEEEEEC
T ss_pred             CCCCEECCCCEECCCCCCCcEEEcccCEEeeec
Confidence            999999999999999999999999999988753

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.69  E-value=5.9e-18  Score=138.56  Aligned_cols=66  Identities=35%  Similarity=0.355  Sum_probs=59.8

Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      +.+.....+.++++||++|+||.+++|.++++||++++|+++++|.+|+|+++++.|+||+.++.+
T Consensus       102 ~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~~G~Pa~~i~~~  167 (209)
T 1mr7_A          102 MPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (209)
T ss_dssp             CCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             ccccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEEEeeCCEEeecc
Confidence            445556667788999999999999999999999999999999999999999999999999998863

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.68  E-value=1.6e-16  Score=135.51  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=47.3

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCc-------EEccccEECCC-CEECCCcEEcCCcEEec
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV-------TLGGRVAVRDH-VSIASKVRLAANSCVFK  236 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~-------~Ig~~~~i~~~-~~ig~~~~i~~~s~v~~  236 (271)
                      ++.||+++.|+.++.|.+++.||++|+|+.++.+.++++|++++       .|.+++++..| ...+++....+.+.+.|
T Consensus       177 ~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A~iik  256 (276)
T 3gos_A          177 PTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVK  256 (276)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSCEEEEEEEEE
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCccCCCCcccccccEEEE
Confidence            45555555555555666667777777777777777777777665       55556655433 24455555556677777


Q ss_pred             cCCCCC
Q 024191          237 DITEPG  242 (271)
Q Consensus       237 ~~~~~~  242 (271)
                      ++++.+
T Consensus       257 ~~~~~~  262 (276)
T 3gos_A          257 KVDAKT  262 (276)
T ss_dssp             ECCC--
T ss_pred             EcChhh
Confidence            776544

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.68  E-value=1.3e-16  Score=137.48  Aligned_cols=80  Identities=21%  Similarity=0.294  Sum_probs=51.2

Q ss_pred             CcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE--cCCCchhhH
Q 024191          177 LVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG--GFPAVPIHE  254 (271)
Q Consensus       177 ~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~--g~p~~~i~~  254 (271)
                      +++++.++.+++++.+..++  ..+++||++|+||++++|.++++||++|+|+++++|.+++|+++.+.  |+||+.++.
T Consensus       201 ~vtIG~~~~ig~~~~i~~~~--~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~  278 (313)
T 3q1x_A          201 SVTLGAMHFQEEGGVIKRGT--KRHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKP  278 (313)
T ss_dssp             TCEEECCCCCCTTCCCCCCS--SCSCEECSSCEECTTCEEESSCEECSSEEECTTCEECSCBCSSEEC------------
T ss_pred             CcEEeCCcEECCCceEcCCC--ccCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEee
Confidence            34444444444444443333  13469999999999999999999999999999999999999999876  999999998


Q ss_pred             HHHH
Q 024191          255 WRRQ  258 (271)
Q Consensus       255 ~~~~  258 (271)
                      ..+.
T Consensus       279 ~~~~  282 (313)
T 3q1x_A          279 CTTK  282 (313)
T ss_dssp             ----
T ss_pred             Cccc
Confidence            7544

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.68  E-value=8.9e-16  Score=126.18  Aligned_cols=138  Identities=20%  Similarity=0.204  Sum_probs=82.9

Q ss_pred             cEECCCcEECCCCEECcCcEECCCcEECCCCEECC----CcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (271)
Q Consensus        53 ~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~----~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  128 (271)
                      ..+++++.|++++.|.+++.||+++.|++++.|..    ++.||++|.|++++.|..+  ..++.++.+..-        
T Consensus        40 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~--~~~~~ig~~~~~--------  109 (213)
T 3kwd_A           40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGL--QQGRVIGDDGQE--------  109 (213)
T ss_dssp             CEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEEC--SSCCEECTTSCE--------
T ss_pred             CcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEec--CCCceeccCCcc--------
Confidence            34445555555555555566666666666666642    3566666666666555321  011222222111        


Q ss_pred             EccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCc
Q 024191          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV  208 (271)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~  208 (271)
                                   ..++||+++.|+.++.+.    .++.||+++.|+.++.+.. +.||++++|+.++.+ .+++|++++
T Consensus       110 -------------~~~~IG~~v~Ig~~~~I~----~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~~~i~~~~  170 (213)
T 3kwd_A          110 -------------YSVWIGDNVSITHMALIH----GPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QDVEIPPGK  170 (213)
T ss_dssp             -------------ESEEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ESCEECTTB
T ss_pred             -------------cceEECCCcEECCCcEEc----CCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CCcEeCCCC
Confidence                         167788888888888776    3478888888888888754 888888877777766 356666666


Q ss_pred             EEccccEECCC
Q 024191          209 TLGGRVAVRDH  219 (271)
Q Consensus       209 ~Ig~~~~i~~~  219 (271)
                      .|++++++.++
T Consensus       171 ~v~~~~vv~~g  181 (213)
T 3kwd_A          171 YVPSGMVITTQ  181 (213)
T ss_dssp             EECTTCEECSH
T ss_pred             EECCCcEEcCC
Confidence            66655555443

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.66  E-value=2e-15  Score=122.03  Aligned_cols=57  Identities=9%  Similarity=0.050  Sum_probs=46.8

Q ss_pred             ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCC
Q 024191          183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDIT  239 (271)
Q Consensus       183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~  239 (271)
                      ++.||++|+|+.++.+.++++||++|+|+++++|.++..+++++++ +.++.+.++++
T Consensus       112 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~  169 (191)
T 3ixc_A          112 ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMT  169 (191)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             CCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCC
Confidence            3677777777777778888999999999999999999999999985 45566666665

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.65  E-value=7.1e-16  Score=132.54  Aligned_cols=61  Identities=13%  Similarity=0.100  Sum_probs=50.0

Q ss_pred             eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHH
Q 024191          198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ  258 (271)
Q Consensus       198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~  258 (271)
                      ...+++||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+|++..+.+.+.
T Consensus       248 ~~~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~dVp~~svv~GnPAk~~~~~~~~  308 (310)
T 3f1x_A          248 IPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTENVPAGSRIVQRKNKDELEHHHH  308 (310)
T ss_dssp             -CCSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSCBCTTCEECCCCCC--------
T ss_pred             CCCCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCccCCCcEEECCCcccCCccccc
Confidence            3456799999999999999999999999999999999999999999999999998877543

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.65  E-value=1e-15  Score=129.03  Aligned_cols=139  Identities=19%  Similarity=0.223  Sum_probs=100.4

Q ss_pred             cEECCCcEECCCCEE----CCCcEECCCCEECCccEE---cceEECCCcEECCCCEECCCCceeEEccCCceecCCceec
Q 024191           71 AVLGANVCIGSGTVV----GPAVTIGQSTNIGFNVAL---SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN  143 (271)
Q Consensus        71 ~~Ig~~v~Ig~~~~I----~~~~~Ig~~~~Ig~~~~I---~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  143 (271)
                      +.|++++.|...+.+    .+.+.||+++.|.+++.|   .++.||+++.|++++.|....                 ..
T Consensus        64 v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~-----------------~~  126 (252)
T 3jqy_B           64 LIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDK-----------------CN  126 (252)
T ss_dssp             EEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSS-----------------SE
T ss_pred             EEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCC-----------------CC
Confidence            455555555555555    344567777777777777   368899999999999986211                 17


Q ss_pred             eEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEEC
Q 024191          144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  223 (271)
Q Consensus       144 ~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig  223 (271)
                      +.||++|.|++++.+.....++..  +.. ......+..++.||++|+|++++.+.++++||++|.||++++|.++  ++
T Consensus       127 ~~IG~~~~Ig~~~~I~~~~~~~~~--~~~-~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~--vp  201 (252)
T 3jqy_B          127 VTIGHDCMIARDVILRASDGHPIF--DIH-SKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD--VP  201 (252)
T ss_dssp             EEECTTCEECSSEEEECSCSSCEE--ETT-TCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSC--BC
T ss_pred             eEECCCCEEcCCcEEecCCCcccc--ccc-ccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcc--cC
Confidence            999999999999998764221111  111 1122345577899999999999999999999999999999999987  66


Q ss_pred             CCcEEcCC
Q 024191          224 SKVRLAAN  231 (271)
Q Consensus       224 ~~~~i~~~  231 (271)
                      +++++.+.
T Consensus       202 ~~~~~~G~  209 (252)
T 3jqy_B          202 SMCAAAGN  209 (252)
T ss_dssp             TTEEEEET
T ss_pred             CCCEEEcc
Confidence            77776543

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.64  E-value=4.4e-16  Score=132.19  Aligned_cols=109  Identities=21%  Similarity=0.303  Sum_probs=75.0

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ++.|+.++.|+.++.|..+  ..+.||+++.|++++.|..++.|+.....    .-..+++||++|+||+++.|.++++|
T Consensus       164 gi~I~p~a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~~~----~~~r~~~IGd~v~IGaga~Il~gv~I  237 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTGKS----SGDRHPKIRQGVLIGAGAKILGNIQV  237 (287)
T ss_dssp             CCEECTTCEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC---------CCCSCEECTTCEECTTCEEESSCEE
T ss_pred             CeEECCCCEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCccc----CCCcCCEECCCCEECCCCEECCCcEE
Confidence            4556666666666666532  23444444444444444333333322111    00124899999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  257 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~  257 (271)
                      |++++|+++++|.+|+|+++++.|+||+.++...+
T Consensus       238 G~~a~IGagsvV~kdVp~~svvvG~PAkii~~~~~  272 (287)
T 3mc4_A          238 GQCSKIAAGSVVLKSVPHNVTVAGVPARIIGETGC  272 (287)
T ss_dssp             CTTCEECTTCEECSCBCTTEEEETTTTEEEEECC-
T ss_pred             CCCCEECCCCEEccccCCCCEEEccCCEEeCcCCC
Confidence            99999999999999999999999999999987643

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.64  E-value=3.9e-15  Score=124.54  Aligned_cols=56  Identities=16%  Similarity=0.268  Sum_probs=40.9

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDIT  239 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~  239 (271)
                      ..+.|+++|+|+.++.+.++++||++|.|+++++|.++  +++++++.+ ++.+.+.++
T Consensus       164 ~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~~G~Pak~i~~~~  220 (240)
T 3r8y_A          164 KPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGTPARVIKEID  220 (240)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC-
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCcEEEccCCEEEecCC
Confidence            34666667777777777788999999999999999886  677877754 445556555

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.63  E-value=1e-14  Score=120.33  Aligned_cols=54  Identities=17%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             CCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          175 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       175 ~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      ++++.+..++.||++|+|+.++.+.++++||+++.|+++++|.++  +++++++.+
T Consensus       157 ~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~--v~~~~~~~G  210 (220)
T 4ea9_A          157 GPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLAIG  210 (220)
T ss_dssp             CTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEET
T ss_pred             CCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEccc--cCCCcEEEE
Confidence            333444456777777777777788888999999999999999986  466666544

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.62  E-value=4.2e-15  Score=124.88  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=104.5

Q ss_pred             EECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcC---C
Q 024191           90 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR---D  165 (271)
Q Consensus        90 ~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~---~  165 (271)
                      .|++++.|.+++.| .++.||+++.|++++.|....                ...+.||+++.|++++.|......   .
T Consensus        61 ~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~----------------~~~i~IG~~~~Ig~~~~I~~~~~~~~~g  124 (247)
T 1qre_A           61 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDE----------------GMPIFVGDRSNVQDGVVLHALETINEEG  124 (247)
T ss_dssp             EECTTCEECTTCEEEESEEECTTCEECTTCEEEESS----------------SCCEEECTTCEECTTCEEEECCSBCTTS
T ss_pred             EECCCcEECCCCEEeCCcEECCCCEECCCcEEecCC----------------CCCEEECCCCEECCCeEEEecccccccC
Confidence            34455555555555 689999999999999986311                014589999999999988653100   0


Q ss_pred             eEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEE-eccCCCCC--
Q 024191          166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV-FKDITEPG--  242 (271)
Q Consensus       166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v-~~~~~~~~--  242 (271)
                      ..+.+ ..+..... .+++.||++++|+.++.+.++++||++|+||++++|.+ +.||++++|+++++| ..++|+++  
T Consensus       125 ~~~~~-~~~~~~~~-~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v  201 (247)
T 1qre_A          125 EPIED-NIVEVDGK-EYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYI  201 (247)
T ss_dssp             CBCGG-GCEEETTE-EESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEE
T ss_pred             ccccc-ceeeccCc-cCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEE
Confidence            00000 00111111 24688999999999999999999999999999999998 999999999999999 33445444  


Q ss_pred             ----eEEc-CCCchhhHHHHHH
Q 024191          243 ----DYGG-FPAVPIHEWRRQV  259 (271)
Q Consensus       243 ----~~~g-~p~~~i~~~~~~~  259 (271)
                          .+.+ +|++.++++.+..
T Consensus       202 ~~g~vv~~~~pa~~i~~~~~~~  223 (247)
T 1qre_A          202 PAGMVVTSQAEADKLPEVTDDY  223 (247)
T ss_dssp             CTTCEECSHHHHHTCCBCCTTS
T ss_pred             CCCCEEecCcchhhhhhhhhhh
Confidence                4544 5888877665444

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.62  E-value=2.4e-15  Score=126.84  Aligned_cols=108  Identities=21%  Similarity=0.321  Sum_probs=73.5

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .+.|+.++.|+.++.|..+  ..+.||+++.|++++.|..+++|+.....    .-..+++||++|+||++++|.++++|
T Consensus       137 g~~I~p~a~IG~g~~I~~~--~~vvIG~~~~IG~~v~I~~gvtig~~~~~----~~~~~~~IGd~v~IGaga~Il~gv~I  210 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKE----SGDRHPKVREGVMIGAGAKILGNIEV  210 (267)
T ss_dssp             SCEECTTCEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSS----CSSCSCEECTTCEECTTCEEESSCEE
T ss_pred             ceEeCCCCEECCCEEECCC--CceEECCeeEECCCCEEcCCcEECCCccc----CCCCCeEECCCeEEcCCCEEeCCcEE
Confidence            5566666666666665532  23344444444433333333333322110    01224899999999999999999999


Q ss_pred             CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191          223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~  256 (271)
                      |++++|+++++|.+|+|+++++.|+||+.++...
T Consensus       211 G~~a~IGagsvV~~dVp~~~~v~G~PAr~i~~~~  244 (267)
T 1ssq_A          211 GKYAKIGANSVVLNPVPEYATAAGVPARIVSQDK  244 (267)
T ss_dssp             CTTCEECTTCEECSCBCTTCEEETTTTEECC---
T ss_pred             CCCCEECCCCEEccCCCCCCEEEecCcEEeccCC
Confidence            9999999999999999999999999999988664

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.62  E-value=2.8e-16  Score=143.26  Aligned_cols=28  Identities=14%  Similarity=0.138  Sum_probs=20.0

Q ss_pred             cEECCCcEEccccEEC--CCCEECCCcEEc
Q 024191          202 ATIGDYVTLGGRVAVR--DHVSIASKVRLA  229 (271)
Q Consensus       202 v~Ig~~~~Ig~~~~i~--~~~~ig~~~~i~  229 (271)
                      ++||++|.||++++|.  ++..|++++++.
T Consensus       365 v~IG~~a~IGagsvV~~~~~~~I~~~s~v~  394 (496)
T 3c8v_A          365 LKIGDGCVVMPHTIIDLEEPLEIPAGHLVW  394 (496)
T ss_dssp             EEECTTCEECTTCEEECSSCEEECSSEEEC
T ss_pred             eEECCCCEECCCCEEecCCCcEeCCCCEEE
Confidence            6777777777777777  667777777766

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.62  E-value=9.7e-16  Score=130.08  Aligned_cols=39  Identities=26%  Similarity=0.551  Sum_probs=30.0

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ..+.||++|+|+.++.|  ++.||++|+||++++|.+++.|
T Consensus       232 ~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I  270 (332)
T 3fsy_A          232 HVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRV  270 (332)
T ss_dssp             CBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEE
T ss_pred             cceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            45677777777777777  6888888888888888888776

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.61  E-value=2.2e-14  Score=116.17  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=33.7

Q ss_pred             ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      .+++.||++++|+.++.+.++++||++++||++++|.+++  ++++++.+
T Consensus       141 ~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v--~~~~~~~G  188 (194)
T 3bfp_A          141 AGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQ--DEKGVFVG  188 (194)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCB--CSCCEECC
T ss_pred             CCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEcccc--CCCCEEEe
Confidence            3455556666666666667778889999999999998764  46666544

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.61  E-value=2.7e-15  Score=122.87  Aligned_cols=62  Identities=23%  Similarity=0.257  Sum_probs=57.0

Q ss_pred             cccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          193 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       193 ~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                      ..++.+.++++||++|+||.+++|.++++||++++|+++|+|.+|+|+++++.|+||+.++.
T Consensus       102 ~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~  163 (212)
T 1xat_A          102 VNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRK  163 (212)
T ss_dssp             CCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             ccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcEEEccCCEEEcc
Confidence            34445677899999999999999999999999999999999999999999999999999886

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.61  E-value=3.9e-15  Score=126.58  Aligned_cols=57  Identities=16%  Similarity=0.270  Sum_probs=53.5

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  256 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~  256 (271)
                      .+++||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+||+.++...
T Consensus       208 ~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~~s~v~G~PAr~i~~~~  264 (289)
T 1t3d_A          208 RHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPD  264 (289)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTTTEEEECCS
T ss_pred             CCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccCCCCCCEEEecCCEEeCcCC
Confidence            358999999999999999999999999999999999999999999999999987653

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.60  E-value=7.5e-16  Score=140.46  Aligned_cols=168  Identities=18%  Similarity=0.266  Sum_probs=97.0

Q ss_pred             CcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEcc
Q 024191           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  131 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  131 (271)
                      ...+++++.|++++.+.+++.||++|.|+++|.| .++.||++|.|+++|.|.+++||++|.|++++.|.          
T Consensus       273 ~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~----------  341 (496)
T 3c8v_A          273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKII----------  341 (496)
T ss_dssp             ---CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEE----------
T ss_pred             CcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEc----------
Confidence            3444555556666666566666666666666666 46667777777777777777777777777777764          


Q ss_pred             CCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec--cCcEECCCcE
Q 024191          132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA--GSATIGDYVT  209 (271)
Q Consensus       132 ~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--~~v~Ig~~~~  209 (271)
                                 .++||++|.||+++.|..+..                  ..+.||++|.|+.++.+.  .+..|++++.
T Consensus       342 -----------gv~IGd~v~IG~~a~I~~~~~------------------~~v~IG~~a~IGagsvV~~~~~~~I~~~s~  392 (496)
T 3c8v_A          342 -----------NAHLGDMIFTGFNSFLQGSES------------------SPLKIGDGCVVMPHTIIDLEEPLEIPAGHL  392 (496)
T ss_dssp             -----------SEEEEETCEECTTCEEECCSS------------------SCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred             -----------CceECCCcEECCCCEEeCCCC------------------cceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence                       566666666666666653211                  125666666666666666  6677777777


Q ss_pred             EccccEECCCCEECCCc-EEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHH
Q 024191          210 LGGRVAVRDHVSIASKV-RLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVAN  261 (271)
Q Consensus       210 Ig~~~~i~~~~~ig~~~-~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~  261 (271)
                      +++.  +.....+.... .++..+.+.+.+..+. .+.+.+++.++.+.+..+.
T Consensus       393 v~G~--v~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~  444 (496)
T 3c8v_A          393 VWGY--IRNKADLAAHSISFEEFAKVDGEVTMGRMTFRGKGGPFLDSFKKRIKR  444 (496)
T ss_dssp             ECSE--ESSHHHHHHSEEEHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHH
T ss_pred             EEEE--eccCccccccccccccHHHHHhHhccccceeecCHHHHHHHHHHHHHH
Confidence            7633  22222222222 1222233344454454 4567788887777654433

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.59  E-value=3.3e-15  Score=127.77  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=64.8

Q ss_pred             EECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCC
Q 024191           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHG  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~  133 (271)
                      .+.+++.|++.++|.+++.||+++.|+++++|..++.|+++|.|..++.+. +.||++|.|++++.|....         
T Consensus       180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~---------  249 (347)
T 3r5d_A          180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTL---------  249 (347)
T ss_dssp             CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC-----------
T ss_pred             eccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEcccc---------
Confidence            344455555555555555555555555555555555555555555544433 5556666666555554100         


Q ss_pred             ceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccc
Q 024191          134 NMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR  213 (271)
Q Consensus       134 ~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~  213 (271)
                                               .                  -.-.+.+.||++|+||.++.|  +++||++|+||++
T Consensus       250 -------------------------~------------------~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAG  284 (347)
T 3r5d_A          250 -------------------------S------------------GGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAG  284 (347)
T ss_dssp             -----------------------------------------------CCCCEECTTCEECTTCEE--CSCBCTTCEECTT
T ss_pred             -------------------------C------------------CCCccceEECCCCEECCCCEE--eeEECCCCEECCC
Confidence                                     0                  000234666666666666666  6778888888888


Q ss_pred             cEECCCCEE
Q 024191          214 VAVRDHVSI  222 (271)
Q Consensus       214 ~~i~~~~~i  222 (271)
                      ++|.+++.|
T Consensus       285 SVVtkdt~I  293 (347)
T 3r5d_A          285 LYITAGTKV  293 (347)
T ss_dssp             CEECTTCEE
T ss_pred             CEECCCCEE
Confidence            888877777

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.57  E-value=7.3e-15  Score=124.75  Aligned_cols=52  Identities=23%  Similarity=0.364  Sum_probs=42.2

Q ss_pred             cEECCCCEEcccceecc--------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc
Q 024191          184 VAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD  237 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~--------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~  237 (271)
                      +.||++|.|++++.|.+        .++||++|+||++++|  +++||++|+|++|++|.+|
T Consensus       208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkd  267 (332)
T 3fsy_A          208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAG  267 (332)
T ss_dssp             CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTT
T ss_pred             eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCC
Confidence            44455555555544444        4999999999999999  9999999999999999988

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.56  E-value=1.8e-14  Score=116.77  Aligned_cols=128  Identities=15%  Similarity=0.222  Sum_probs=83.6

Q ss_pred             EECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceec
Q 024191           60 LIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (271)
Q Consensus        60 ~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  137 (271)
                      .+++++.|.+  .+.++.++.||++++|.+++.|.+++         .++||++|.|++++.|..               
T Consensus        58 ~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~---------~i~IG~~~~Ig~~~~I~~---------------  113 (195)
T 3nz2_A           58 HLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGA---------PITIGDHVLIGPSTQFYT---------------  113 (195)
T ss_dssp             EECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSS---------CEEECTTCEECTTCEEEC---------------
T ss_pred             hcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCc---------eEEECCCCEECCCCEEec---------------
Confidence            3555555555  24455556666655555555553332         246888888888888753               


Q ss_pred             CCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEEC
Q 024191          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR  217 (271)
Q Consensus       138 ~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~  217 (271)
                           .....+..                      ....+..+.+++.||++|||+.++.|.++++||++|+||++++|.
T Consensus       114 -----~~~~~~~~----------------------~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~  166 (195)
T 3nz2_A          114 -----ASHSLDYR----------------------RRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVN  166 (195)
T ss_dssp             -----EECCSSGG----------------------GTTTCCCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             -----CCCCcccc----------------------cccccceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEc
Confidence                 11111111                      112334455778899999999999999999999999999999999


Q ss_pred             CCCEECCCcEE-cCCcEEeccCCC
Q 024191          218 DHVSIASKVRL-AANSCVFKDITE  240 (271)
Q Consensus       218 ~~~~ig~~~~i-~~~s~v~~~~~~  240 (271)
                      ++  +++++++ |.++.+.+.+.+
T Consensus       167 ~d--vp~~~v~~G~Pa~~i~~~~~  188 (195)
T 3nz2_A          167 QD--VPPDTLVGGTPARILRSLKD  188 (195)
T ss_dssp             SC--BCSSEEEETTTTEEEEECC-
T ss_pred             cc--cCCCcEEEccCCEEecccCh
Confidence            87  4566665 556667776653

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.56  E-value=4.1e-15  Score=135.41  Aligned_cols=38  Identities=24%  Similarity=0.547  Sum_probs=25.1

Q ss_pred             ccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEe
Q 024191          100 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID  159 (271)
Q Consensus       100 ~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~  159 (271)
                      ++.|.++.||++|.|++ +.+.                     +++||++|.|++++.|.
T Consensus       325 ~~~I~~~~Ig~~~~I~~-~~i~---------------------~~~Ig~~~~Ig~~~~I~  362 (451)
T 1yp2_A          325 DADVTDSVIGEGCVIKN-CKIH---------------------HSVVGLRSCISEGAIIE  362 (451)
T ss_dssp             EEEEEEEEECTTCEEEE-EEEE---------------------SCEECTTCEECTTCEEE
T ss_pred             ceEEeCeEECCCCEEcc-eEEe---------------------ccEECCCCEECCCCEEc
Confidence            34444566667776665 6664                     67777777777777775

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.56  E-value=6.2e-15  Score=126.07  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=43.0

Q ss_pred             cEECCCCEEcccceecc--------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCC
Q 024191          184 VAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT  239 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~--------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~  239 (271)
                      +.||++|.|++++.+.+        +++||++|+||++++|  +++||++|+|+++++|.+|.+
T Consensus       231 v~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~  292 (347)
T 3r5d_A          231 VFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTK  292 (347)
T ss_dssp             CEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCE
T ss_pred             EEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCE
Confidence            44444444444444444        4999999999999999  999999999999999998864

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.56  E-value=1e-14  Score=119.02  Aligned_cols=140  Identities=19%  Similarity=0.171  Sum_probs=88.0

Q ss_pred             EECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEE----cceEECCCcEECCCCEECCCCcee
Q 024191           54 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL----SNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        54 ~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I----~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      .+++++.|++++.|.+  ++.||+++.|+++|+|.+++.||++|.|+.++.|    .+++||++|.|++++.|....+++
T Consensus        34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~  113 (205)
T 3vbi_A           34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDF  113 (205)
T ss_dssp             EECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCC
T ss_pred             EECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCc
Confidence            4455555555555555  5677777777777777666666666666666666    225666666666666653210000


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCC
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDY  207 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~  207 (271)
                      .                                   .....++............++.||++|+|+.++.+.++++||++
T Consensus       114 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~  158 (205)
T 3vbi_A          114 S-----------------------------------GNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEG  158 (205)
T ss_dssp             S-----------------------------------SSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTT
T ss_pred             c-----------------------------------cccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCC
Confidence            0                                   00001111111122333467889999999999999999999999


Q ss_pred             cEEccccEECCCCEECCCcEEcC
Q 024191          208 VTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       208 ~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      |.|+++++|.++  +++++++.+
T Consensus       159 ~~Ig~gsvV~~~--v~~~~v~~G  179 (205)
T 3vbi_A          159 VAVGAMSMVKES--LDDWYIYVG  179 (205)
T ss_dssp             CEECTTCEECSC--BCTTEEEET
T ss_pred             CEEcCCCEECCc--cCCCeEEEc
Confidence            999999999987  577777654

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.55  E-value=1.5e-14  Score=124.54  Aligned_cols=58  Identities=16%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  241 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~  241 (271)
                      +.||++|+|+.++.|.++++||++|+||++++|.+++..+..+++ |.++.+.|+.++.
T Consensus       224 ~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~~~~~  282 (313)
T 3q1x_A          224 PTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKPCTTK  282 (313)
T ss_dssp             CEECSSCEECTTCEEESSCEECSSEEECTTCEECSCBCSSEEC----------------
T ss_pred             CEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEeeCccc
Confidence            466666777777777888999999999999999998776666655 7888888887644

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.55  E-value=5e-14  Score=113.62  Aligned_cols=60  Identities=23%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCC
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDIT  239 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~  239 (271)
                      ..++.++.||++|||+.++.|.++++||++|+||++++|.++  +++++++ |.++.+.|.++
T Consensus       129 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~  189 (190)
T 3hjj_A          129 KEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVVGGNPAKVIKTIE  189 (190)
T ss_dssp             EEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             ccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            344567888999999999999999999999999999999987  5677666 45566767665

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.54  E-value=7.4e-14  Score=113.51  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=49.9

Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCC
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDIT  239 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~  239 (271)
                      ..+.+++.||++|||+.++.|.++++||++|+||++++|.++  |++++++ |.++.+.|++.
T Consensus       126 ~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--vp~~~vv~G~PArvik~~~  186 (203)
T 1krr_A          126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREIN  186 (203)
T ss_dssp             CBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             ceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--cCCCcEEEccCcEEeccCC
Confidence            345578889999999999999999999999999999999997  6788775 55666777664

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.52  E-value=4.3e-14  Score=114.86  Aligned_cols=63  Identities=17%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCCC
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEPG  242 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~~  242 (271)
                      ..+..++.||++|||+.++.|.++++||++|+||++++|.+++  ++++++ |.++.+.+.+.+..
T Consensus       125 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dv--p~~~v~~G~Pak~i~~~~~~~  188 (199)
T 3ftt_A          125 FEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDI--PPHSLAVGNPCKVVRKIDNDL  188 (199)
T ss_dssp             EEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCB--CTTEEEETTTTEEEEECCCCC
T ss_pred             ceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECccc--CCCCEEEEECCEEEeeCChhh
Confidence            3445778888899999999999999999999999999999974  667665 55666777765443

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.51  E-value=6.5e-14  Score=112.76  Aligned_cols=60  Identities=30%  Similarity=0.434  Sum_probs=48.4

Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE-EcCCcEEeccCC
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFKDIT  239 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~-i~~~s~v~~~~~  239 (271)
                      ..++.++.||++|||+.++.|.++++||++|+||++++|.++  ++++++ +|.++.+.|.++
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~~i~  187 (188)
T 3srt_A          127 IEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIKKIE  187 (188)
T ss_dssp             EEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEEECC
T ss_pred             ceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            344567888888999999999999999999999999999987  455555 566677777765

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.51  E-value=2.4e-13  Score=109.08  Aligned_cols=111  Identities=23%  Similarity=0.313  Sum_probs=85.5

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|..++.|...                  ..+.||++|.|++++.|.... ++   .+......+..+.++
T Consensus        73 ~~v~IG~~~~i~~~~~i~~~------------------~~i~IG~~v~Ig~~v~I~~~~-h~---~~~~~~~~~~~~~~~  130 (185)
T 2p2o_A           73 YNIHVGENFFMNFDGVILDV------------------CEVRIGDHCFIGPGVHIYTAT-HP---LDPHERNSGLEYGKP  130 (185)
T ss_dssp             TTEEECTTEEECSSEEEECS------------------SCEEECTTCEECTTCEEECEE-CC---SSHHHHHTCCBEECC
T ss_pred             CCEEECCeeEEcCCeEEEec------------------cceEECCCcEEeCCCEEEcCC-Cc---CChhhcccCccccCC
Confidence            58889999999988888522                  289999999999999886421 00   000011123456678


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEeccC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDI  238 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~~~  238 (271)
                      +.||++|||++++.|.++++||++|+||++++|.++  |++++++++. +.+.|++
T Consensus       131 v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~vi~~i  184 (185)
T 2p2o_A          131 VVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKVIKWL  184 (185)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC
T ss_pred             eEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEEeeec
Confidence            999999999999999999999999999999999997  7889888777 5666654

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.46  E-value=4e-14  Score=127.82  Aligned_cols=122  Identities=15%  Similarity=0.107  Sum_probs=90.7

Q ss_pred             ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECC-----CCEECcCcEECCCcEECCCCEECCC
Q 024191           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEV-----GAIVHSKAVLGANVCIGSGTVVGPA   88 (271)
Q Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~-----~~~I~~~~~Ig~~v~Ig~~~~I~~~   88 (271)
                      +++|.++++++++++++..++.......+....+.++..+.+.+++.|++     ++.+ .++.||++|.| +++.|. +
T Consensus       264 ~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~-~  340 (420)
T 3brk_X          264 EPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALN-R  340 (420)
T ss_dssp             SCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEE-S
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEe-C
Confidence            56899999999999887666543322233344556777777777777776     6666 57777777877 777775 5


Q ss_pred             cEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEe
Q 024191           89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID  159 (271)
Q Consensus        89 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~  159 (271)
                      +.||++|.|+.+|.|.+++|++++.|++++.|.                     +++||+++.|++++++.
T Consensus       341 ~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~---------------------~~~ig~~~~i~~~~~i~  390 (420)
T 3brk_X          341 SLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS---------------------NVVIDHGVVIPEGLIVG  390 (420)
T ss_dssp             CEECTTCEECTTCEEEEEEECTTCEECTTCEEE---------------------EEEECTTCEECTTCEES
T ss_pred             cEEcCCCEECCCCEEcceEEcCCCEECCCCEEe---------------------ceEECCCCEECCCCEEe
Confidence            778888888888888888888888888888885                     67788888888777665

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.46  E-value=8.1e-14  Score=114.99  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      .+..++.||++|+|+.++.|.++++||++|+||++++|.++  +++++++++.
T Consensus       115 ~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv~G~  165 (220)
T 4hur_A          115 PLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGN  165 (220)
T ss_dssp             CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETT
T ss_pred             cccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEEeCC
Confidence            34577889999999999999999999999999999999987  5778777553

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.45  E-value=7.2e-13  Score=108.86  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=62.2

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .++||++|.|+++++|.....++.....   .+.......++.||+++||+.++.+.++++||++|.|+++++|.++  +
T Consensus       100 ~i~IG~~~~Ig~~~~I~~~~~h~~~~~~---~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~--v  174 (215)
T 2wlg_A          100 KISIGKDCMLAHGYEIRNTDMHPIYSLE---NGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKS--F  174 (215)
T ss_dssp             EEEECTTCEECTTEEEESCCSSCEEETT---TCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSC--C
T ss_pred             CEEECCCCEEcCCEEEECCCCccccccc---ccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCc--c
Confidence            6677777777777777653222211110   0112234567899999999999999999999999999999999986  5


Q ss_pred             CCCcEEc--CCcEEec
Q 024191          223 ASKVRLA--ANSCVFK  236 (271)
Q Consensus       223 g~~~~i~--~~s~v~~  236 (271)
                      +++++++  .++.+.+
T Consensus       175 p~~~i~~aG~Pa~~i~  190 (215)
T 2wlg_A          175 KEPNCVIAGSPAKIVK  190 (215)
T ss_dssp             CCCSCEEETTTTEEEE
T ss_pred             CCCeEEEcccCCEEEC
Confidence            7787776  3344443

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.43  E-value=1.8e-12  Score=103.70  Aligned_cols=104  Identities=20%  Similarity=0.312  Sum_probs=80.7

Q ss_pred             cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  183 (271)
Q Consensus       104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~  183 (271)
                      .++.||+++.|++++.|...                  ..+.||++|.|++++.|.... ++.   +...-..+..+.++
T Consensus        71 ~~v~IG~~~~I~~~~~i~~~------------------~~i~IG~~v~Ig~~v~I~~~~-h~~---~~~~~~~~~~~~~~  128 (182)
T 1ocx_A           71 YNIFLGNNFFANFDCVMLDV------------------CPIRIGDNCMLAPGVHIYTAT-HPI---DPVARNSGAELGKP  128 (182)
T ss_dssp             TTEEECSSEEECSSEEEECS------------------SCEEECTTCEECTTCEEECEE-CCS---SHHHHTTTCBEECC
T ss_pred             CCEEECCCcEEeCCeEEEec------------------cceEEcCCcEEeCCcEEEeCC-Ccc---ChhhcccCccccCC
Confidence            58999999999999988532                  278999999999999886421 000   00001123455688


Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      +.||++|||++++.|.++++||++|+||++++|.++  |++++++++.
T Consensus       129 v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv~G~  174 (182)
T 1ocx_A          129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN  174 (182)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETT
T ss_pred             eEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEEEcc
Confidence            999999999999999999999999999999999987  6888877554

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.35  E-value=2.5e-12  Score=112.94  Aligned_cols=39  Identities=21%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECC
Q 024191          184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS  224 (271)
Q Consensus       184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~  224 (271)
                      +.||++|+|+.++.  .+++||++|.||++++|.+++.+.+
T Consensus       291 VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~  329 (387)
T 2rij_A          291 ISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLL  329 (387)
T ss_dssp             CEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEE
T ss_pred             eEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeee
Confidence            44555555555544  4566666666666666666666644

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.35  E-value=1.2e-12  Score=114.92  Aligned_cols=65  Identities=14%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             EEccccEECCCCEEcccce----eccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEc
Q 024191          179 QIGHNVAIGKSCMLCGQVG----IAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG  246 (271)
Q Consensus       179 ~i~~~~~ig~~~~i~~~~~----i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g  246 (271)
                      .|++++.||++|.|++++.    +.++    ++||++|+||++++  +++.||++|+|+++++|.++++.+.. .|
T Consensus       260 ~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~~-~G  332 (387)
T 2rij_A          260 RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLLK-DA  332 (387)
T ss_dssp             EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEEC-CH
T ss_pred             EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeeec-CC
Confidence            3444444444444444442    3333    99999999999999  99999999999999999999986665 45

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.31  E-value=1.2e-12  Score=107.27  Aligned_cols=58  Identities=14%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             CCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEe
Q 024191          176 NLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVF  235 (271)
Q Consensus       176 ~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~  235 (271)
                      .++.+..++.||++|+|+.++.+.++++||++|.||++++|.++  +++++++++ ++.+.
T Consensus       104 ~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv~G~PAk~i  162 (212)
T 3eev_A          104 DGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVVGSNPAKHI  162 (212)
T ss_dssp             CCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred             CCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEE
Confidence            44556678999999999999999999999999999999999976  578887754 34443

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.31  E-value=1.8e-12  Score=106.46  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             CCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          175 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       175 ~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      .....+..++.||++|+|+.++.+.++++||++|.|+++++|.++  +++++++++
T Consensus       110 ~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d--v~~~~~~~G  163 (219)
T 4e8l_A          110 LKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGG  163 (219)
T ss_dssp             TTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred             cccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCeEEEe
Confidence            334556678999999999999999999999999999999999986  577877754

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.26  E-value=3.2e-12  Score=104.40  Aligned_cols=57  Identities=21%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      .+...+.+.+++.||++|+|+.++.+.++++||+++.|+++++|.++  +++++++++.
T Consensus       103 ~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G~  159 (209)
T 1mr7_A          103 PKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGN  159 (209)
T ss_dssp             CCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEET
T ss_pred             cccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEee
Confidence            34445566778999999999999999999999999999999999986  5778777554

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.25  E-value=5.3e-11  Score=102.24  Aligned_cols=51  Identities=22%  Similarity=0.407  Sum_probs=43.1

Q ss_pred             EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      ...++.||++|+|+.++.|.++++||++|+||++++|.++  +++++++.+..
T Consensus       248 ~~~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~d--Vp~~svv~GnP  298 (310)
T 3f1x_A          248 IPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTEN--VPAGSRIVQRK  298 (310)
T ss_dssp             -CCSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSC--BCTTCEECCCC
T ss_pred             CCCCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCc--cCCCcEEECCC
Confidence            3466789999999999999999999999999999999975  56777776654

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.19  E-value=7.4e-11  Score=100.09  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=49.0

Q ss_pred             CcEECCCcEECCCCEEC--cCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEE
Q 024191           52 SACIDSTVLIEVGAIVH--SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV  129 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~I~--~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~  129 (271)
                      ++.|++++.|++++.|.  .+++||+++.||++|.|.+++.|+.....   .....++||++|.|++++.|..       
T Consensus       164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~---~~~r~~~IGd~v~IGaga~Il~-------  233 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKS---SGDRHPKIRQGVLIGAGAKILG-------  233 (287)
T ss_dssp             CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC--------CCCSCEECTTCEECTTCEEES-------
T ss_pred             CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCccc---CCCcCCEECCCCEECCCCEECC-------
Confidence            34444445555555554  34444444444444444444444332110   0113467888888888888863       


Q ss_pred             ccCCceecCCceeceEECCCcEECCccEEeC
Q 024191          130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDR  160 (271)
Q Consensus       130 ~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~  160 (271)
                                   ++.||+++.|++++++..
T Consensus       234 -------------gv~IG~~a~IGagsvV~k  251 (287)
T 3mc4_A          234 -------------NIQVGQCSKIAAGSVVLK  251 (287)
T ss_dssp             -------------SCEECTTCEECTTCEECS
T ss_pred             -------------CcEECCCCEECCCCEEcc
Confidence                         788888888888888874

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.13  E-value=6.2e-10  Score=94.62  Aligned_cols=53  Identities=13%  Similarity=0.225  Sum_probs=43.5

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEec
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFK  236 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~  236 (271)
                      ++++||++|+|+.++.|.++++||++|.||++++|.++  +++++++ |.++.+.+
T Consensus       208 ~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~~s~v~G~PAr~i~  261 (289)
T 1t3d_A          208 RHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARIVG  261 (289)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEEEE
T ss_pred             CCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC--CCCCCEEEecCCEEeC
Confidence            56889999999999999999999999999999999997  4566655 55555544

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.12  E-value=5.8e-10  Score=93.91  Aligned_cols=53  Identities=13%  Similarity=0.305  Sum_probs=43.4

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEec
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFK  236 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~  236 (271)
                      .+++||++|+|+.++.|.++++||++|.||++++|.++  +++++++ |.++.+.+
T Consensus       188 ~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~d--Vp~~~~v~G~PAr~i~  241 (267)
T 1ssq_A          188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIVS  241 (267)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEECC
T ss_pred             CCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccC--CCCCCEEEecCcEEec
Confidence            45789999999999999999999999999999999986  4566655 55555544

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.00  E-value=2.2e-09  Score=87.68  Aligned_cols=60  Identities=13%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             CCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEec
Q 024191          175 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFK  236 (271)
Q Consensus       175 ~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~  236 (271)
                      ..++.+..++.||++|+|+.++.+.++++||++|.||++++|.++  +++++++++ ++.+.+
T Consensus       102 ~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~G~Pa~~i~  162 (212)
T 1xat_A          102 VNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIR  162 (212)
T ss_dssp             CCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             ccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEEccCCEEEc
Confidence            344556678999999999999999999999999999999999986  677877744 444433

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.92  E-value=3e-09  Score=95.74  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=16.5

Q ss_pred             CcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           88 AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        88 ~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      ++.||++|.| .++.|.+++||++|.|++++.|.
T Consensus       324 ~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~  356 (420)
T 3brk_X          324 SSVVSGDCII-SGAALNRSLLFTGVRANSYSRLE  356 (420)
T ss_dssp             SCEECSSCEE-ESCEEESCEECTTCEECTTCEEE
T ss_pred             CCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEc
Confidence            4444444444 44444445555555555555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	6e-26
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	3e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	7e-23
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	8e-18
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.001
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.001
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.004
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	6e-17
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	7e-15
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	2e-13
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	3e-12
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	4e-10
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	4e-09
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	2e-08
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	3e-06
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	0.001
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-06
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-05
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	1e-05
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	3e-05
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	2e-05
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	4e-05
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	1e-04
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	2e-04
d3bswa1	193	b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylo	0.001

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score =  100 bits (249), Expect = 6e-26
 Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 10/218 (4%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +      S+ ++     I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK-----SHVVVNGHTKI 56

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDH 171
                I Q      V++      +P  +   IG+   I  +  I RG+      T +G  
Sbjct: 57  GRDNEIYQFASIGEVNQDLKYAGEPTRVE--IGDRNRIRESVTIHRGTVQGGGLTKVGSD 114

Query: 172 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231
           + +     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I + V +   
Sbjct: 115 NLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGC 174

Query: 232 SCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           S V +D+       G  A P       +  +  S +  
Sbjct: 175 SGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAI 212

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
           +I  S  +H    + +                     A IG +  IG    +        
Sbjct: 1   MIDKSAFVHPTAIVEE--------------------GASIGANAHIGPFCIVG----PHV 36

Query: 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 226
            IG+ + + + V +  +  IG+   +     I        Y     RV + D   I   V
Sbjct: 37  EIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESV 96

Query: 227 RLAANSCVFKDITEPGDYGGF 247
            +   +     +T+ G     
Sbjct: 97  TIHRGTVQGGGLTKVGSDNLL 117

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 93.4 bits (231), Expect = 7e-23
 Identities = 32/258 (12%), Positives = 74/258 (28%), Gaps = 54/258 (20%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
           I+ ++A   +   I   A +     L  NV IG    +  A     +         S+ +
Sbjct: 59  IYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSV 118

Query: 108 IG------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN------ 155
                   D+ +++    +   G      +   +  +  + ++RI + V++  N      
Sbjct: 119 REECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHA 178

Query: 156 SCIDRGSWRDTVI-----------------------------------------GDHSKI 174
               R    D  +                                          +H+ I
Sbjct: 179 FIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALI 238

Query: 175 DNLVQIGHNVAIGKSCMLCG-QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           +    + H+V +G    + G  + +     I  +  + G + +   V I+ +  + A   
Sbjct: 239 EGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDD 298

Query: 234 VFKDITEPGDYGGFPAVP 251
               +  P    G   + 
Sbjct: 299 NTIHLRGPKVINGEDRIT 316

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 78.5 bits (192), Expect = 8e-18
 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQD 123
           AI+  KA +   V IG   V+G  V + +   +  NV L  +  +G +  I     +G  
Sbjct: 7   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 66

Query: 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 183
                     + L   +          E    +    G  + T+IGD + +   V + H+
Sbjct: 67  PQDLKYKGEYSELIIGE-----DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHD 121

Query: 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 243
             IG  C+L   V +AG   IGDYV +GG  A+   V IA    +A  S + KD+     
Sbjct: 122 CVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCT 181

Query: 244 YGGFPAVPIHEWRRQVANQIRSSK 267
             G  A      R ++   + S  
Sbjct: 182 VEGNRAFIRGLNRHRMRQLLESKD 205

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 168 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 227
           I   + I    +I   V IG+ C++   V +     + + VTL G   V  +  I     
Sbjct: 3   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAV 62

Query: 228 LAANSCVFKDITEPGDYGGFPAVPIHEWR 256
           L       +D+   G+Y        +  R
Sbjct: 63  LGTQP---QDLKYKGEYSELIIGEDNLIR 88

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 30/148 (20%)

Query: 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
           I  + II                             A I   VEIG    I  G      
Sbjct: 3   IAKTAIISP--------------------------KAEINKGVEIGEFCVIGDG----VK 32

Query: 168 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 227
           + +  K+ N V +  +  +GK+  +     +        Y      + + +   I     
Sbjct: 33  LDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCM 92

Query: 228 LAANSCVFKDITEPGDYGGFPAVPIHEW 255
           +   +      T  GD     A      
Sbjct: 93  INPGTEGGIKKTLIGDKNLLMAYVHVAH 120

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 19/154 (12%), Positives = 37/154 (24%), Gaps = 24/154 (15%)

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
             II     I+ GV IG+                       IG+ V++     +      
Sbjct: 6   TAIISPKAEINKGVEIGE--------------------FCVIGDGVKLDEGVKL----HN 41

Query: 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 224
           +  +  H+ +    +I     +G         G      IG+   +     +        
Sbjct: 42  NVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGI 101

Query: 225 KVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ 258
           K  L  +  +              +  I      
Sbjct: 102 KKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVT 135

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (183), Expect = 6e-17
 Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 5/193 (2%)

Query: 67  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG 126
           +      G +V I +  ++   VT+G    IG    + N +IGD C I     +      
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI 186
                      +P    A +     +G    + +          H       +IG NV I
Sbjct: 71  AACTIGPFARLRPG---AELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNI 127

Query: 187 GKSCMLCGQVGIA-GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY- 244
           G   + C   G       IGD V +G    +   V++     +AA + V +++ E     
Sbjct: 128 GAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAI 187

Query: 245 GGFPAVPIHEWRR 257
              P      WRR
Sbjct: 188 SRVPQTQKEGWRR 200

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 2/156 (1%)

Query: 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW 163
           S   I         V +G+  + +         K+       + + ++IG    I  G  
Sbjct: 16  SVQFIKPILEKLENVEVGEYSY-YDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVT 74

Query: 164 RDTVIGDHSKIDNLVQIG-HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222
                 +H    +            K      Q+ I G   IG+ V +G  V +   V I
Sbjct: 75  IIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKI 134

Query: 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ 258
                +AANS V KDI      GG PA  I +   Q
Sbjct: 135 GDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQ 170

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 12/153 (7%)

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
           N  +G                G++     +   +  + +    + + IG+   I  G+  
Sbjct: 20  NIRVGRYSYYS----------GYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAF 69

Query: 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG--IAGSATIGDYVTLGGRVAVRDHVSI 222
                   + +       +    +        G   AG   IG  V +G        V +
Sbjct: 70  IMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRV 129

Query: 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255
                + + + V  D+      GG PA  I + 
Sbjct: 130 GHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR 162

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSA 202
           N  +GN+     +  +         IGD+  +   V I                 +    
Sbjct: 72  NIFLGNNFFANFDCVMLDVC--PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPV 129

Query: 203 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 254
           TIG+ V +GGR  +   V+I   V +A+ + V KD+ +    GG PA  I +
Sbjct: 130 TIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 181

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 55.8 bits (133), Expect = 4e-10
 Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 3/185 (1%)

Query: 73  LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH 132
           +  +V I S   +   VT+   T IG    L+N        I  G  I            
Sbjct: 11  IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVAD 70

Query: 133 GN--MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 190
           G           N+ +G  V IG    +   S  +     H       ++G NV  G   
Sbjct: 71  GVIVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGT 130

Query: 191 MLCGQVGI-AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 249
           +     G       IG+ V +G    +   V +     + A S + KD+       G   
Sbjct: 131 ITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGR 190

Query: 250 VPIHE 254
               +
Sbjct: 191 QINKD 195

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 4e-09
 Identities = 28/141 (19%), Positives = 42/141 (29%), Gaps = 14/141 (9%)

Query: 114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
           +     +       +     N+          IG +     N  I         IGD+  
Sbjct: 57  VGENAWVEP---PVYFSYGSNI---------HIGRNFYANFNLTIVDDYTV--TIGDNVL 102

Query: 174 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233
           I   V +          +       +   TIG+ V +G  V +   V+I     + A S 
Sbjct: 103 IAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSI 162

Query: 234 VFKDITEPGDYGGFPAVPIHE 254
           V KDI       G P   I E
Sbjct: 163 VTKDIPPNVVAAGVPCRVIRE 183

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 20/153 (13%), Positives = 49/153 (32%)

Query: 100 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 159
           + A+         +             +  +++   L         +   V+I   + I 
Sbjct: 88  DPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIG 147

Query: 160 RGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH 219
            G   D   G      ++++   ++  G +    G+        + + V +G    +  +
Sbjct: 148 HGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN 207

Query: 220 VSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
           + +    ++ ANS V   + E     G PA  +
Sbjct: 208 IEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 16/131 (12%), Positives = 39/131 (29%), Gaps = 1/131 (0%)

Query: 86  GPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 144
           G    I  S  +  N  +  + ++ +   +     +  D    +V ++ N+     +  +
Sbjct: 8   GKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTS 67

Query: 145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI 204
                      +           +G++  I     I     IG   ++     +  +  I
Sbjct: 68  HGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEI 127

Query: 205 GDYVTLGGRVA 215
            DY  + G   
Sbjct: 128 PDYSLVLGVPG 138

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 26/170 (15%)

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI---DRG 161
              I  S  +     +                      +  +     +  ++ +      
Sbjct: 10  KPRIHPSAFVDENAVVIG--------------------DVVLEEKTSVWPSAVLRGDIEQ 49

Query: 162 SWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 221
            +          +      G+   IG+   +     +   A +G+YV +G    + D   
Sbjct: 50  IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNA-MVHGAKVGNYVIIGISSVILDGAK 108

Query: 222 IASKVRLAANSCV--FKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 269
           I   V + A + V   K+I +     G P   + +   +     + + + 
Sbjct: 109 IGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEI 158

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 67  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           +      G +V I +  ++   VT+G    IG    + N +IGD C I     +
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 64

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCIIG 109
           +  T+       + +  ++  NV +G    +G         IG    I     + +  + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 110 DSCII 114
            +C I
Sbjct: 71  AACTI 75

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 8/128 (6%)

Query: 100 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL--NARIGNHVEIGANSC 157
           +  +++ +IG+ C+I N                G +++   L+  +    +       + 
Sbjct: 9   DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK 68

Query: 158 IDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG-GRVAV 216
                     IG +  I     I  N  IG +  +  +  +  +A   D   +  G V V
Sbjct: 69  G----SVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTV 123

Query: 217 RDHVSIAS 224
                I S
Sbjct: 124 IKDALIPS 131

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 51  QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGD 110
             + +     I  GAI+    ++GA+           A        IG N  +   II  
Sbjct: 29  HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDK 88

Query: 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
           +  I + V I             +     +     +     I +   I
Sbjct: 89  NARIGDNVKIINKDNVQEAARETDG-YFIKSGIVTVIKDALIPSGIII 135

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFN-VA 102
            A +D   +++  A V S A +G NV +  G  +G            I  +  IG     
Sbjct: 131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEV 190

Query: 103 LSNCIIGDSCIIHNGVCIGQDGFGF 127
           +   I+ +  +I  GV +GQ    +
Sbjct: 191 VEGVIVEEGSVISMGVYLGQSTRIY 215

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 21/154 (13%)

Query: 106 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-- 163
                            DG      +   M                +   + + +G++  
Sbjct: 59  LKKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIA 118

Query: 164 -----------RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS--------ATI 204
                          + + + +D    +G    IGK+  L G VGI G           I
Sbjct: 119 RNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTII 178

Query: 205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI 238
            D   +G R  V + V +     ++    + +  
Sbjct: 179 EDNCFIGARSEVVEGVIVEEGSVISMGVYLGQST 212

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 6/150 (4%)

Query: 68  HSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD--GF 125
            S  V+     I     V   VTIG +  +    ++ +       +              
Sbjct: 20  PSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHA 79

Query: 126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA 185
              ++E G  ++   +        V IG N  +   S         + + +   IG    
Sbjct: 80  LETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH----GPAAVGDDTFIGMQAF 135

Query: 186 IGKSCMLCGQVGIAGSATIGDYVTLGGRVA 215
           + KS +    V    SA IG  +  G  + 
Sbjct: 136 VFKSKVGNNCVLEPRSAAIGVTIPDGRYIP 165

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVV----GPAVTIGQSTNI-GFNVALSNCIIG 109
           ID T  I+  A V  +  +GANV +     +    G  + +G  +N+    V  +   I 
Sbjct: 25  IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETIN 84

Query: 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL---LNARIGNHVEIGANSCIDRGSW-RD 165
           +         +  DG  + V    N+    Q      A +G+   IG  + + +     +
Sbjct: 85  EEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN 144

Query: 166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQV 196
            V+   S    +  I     I    ++  Q 
Sbjct: 145 CVLEPRSAAIGVT-IPDGRYIPAGMVVTSQA 174

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} Length = 193

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 22/100 (22%), Positives = 35/100 (35%)

Query: 153 GANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG 212
           G              I     ++    I H   IG+   +      AG+  IG    LG 
Sbjct: 94  GILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGI 153

Query: 213 RVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252
              V  ++S+A    L   + + K+  E G + G PA  +
Sbjct: 154 NSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	100.0
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	100.0
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.96
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.93
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.93
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.92
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.87
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.86
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.86
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.84
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.82
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.81
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.81
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.8
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.78
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.75
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.73
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.73
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.7
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.64
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.64
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.62
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.61
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.61
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.56
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.53
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.49
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.47
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.46
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.45
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.45
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.4
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.25
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.14

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=100.00  E-value=1.2e-34  Score=244.40  Aligned_cols=188  Identities=27%  Similarity=0.390  Sum_probs=149.0

Q ss_pred             CCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCce
Q 024191           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (271)
Q Consensus        57 ~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~  135 (271)
                      +++.|++.|+|++++.||++|.|+++|+|++++.||++|.|++++.| .++.|++++.+.+++.++...+.+        
T Consensus         4 ~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~--------   75 (262)
T d2jf2a1           4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDL--------   75 (262)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCT--------
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccc--------
Confidence            33444444444455555555555666666666666666666666666 567777778888777776543221        


Q ss_pred             ecCCceeceEECCCcEECCccEEeCCCcC---CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEcc
Q 024191          136 LKKPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG  212 (271)
Q Consensus       136 ~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~---~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~  212 (271)
                      ..........||+++.|++++.+..+...   .+.||+++.++++++|++++.||+++++.+++.+.++++||++|+||+
T Consensus        76 ~~~~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~  155 (262)
T d2jf2a1          76 KYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGG  155 (262)
T ss_dssp             TCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECT
T ss_pred             cccccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEecc
Confidence            11122347899999999999999987654   389999999999999999999999999999999999999999999999


Q ss_pred             ccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          213 RVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       213 ~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      ++.|.++++||++++|+++|.|+||+||++++.|+||+..
T Consensus       156 ~~~i~~~v~IG~~a~igagS~Vtkdvp~~~~~~G~PA~~~  195 (262)
T d2jf2a1         156 MTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPF  195 (262)
T ss_dssp             TCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEEE
T ss_pred             CceeccccEeehhceeeccceEeecCCcccccCCCCceee
Confidence            9999999999999999999999999999999999999863

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=1.8e-33  Score=236.91  Aligned_cols=186  Identities=27%  Similarity=0.368  Sum_probs=143.3

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      .||++|.|+++|.|++++.|+++|+|++++.|+++|+|++++.|+.++.           ||+++.+.+++.|+.+.+.+
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~-----------IG~~~~i~~~~~Ig~~~~~~   70 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTF-----------VGKNTEIFPFAVLGTQPQDL   70 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEE-----------ECTTCEECTTCEESCCCSCS
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCE-----------EeeecccCCccEECCCCccc
Confidence            3666666666666666666666666666666665555555555554444           44444444444444332111


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEE
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI  204 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~I  204 (271)
                              ..........+|+++.++.++.+.....   ..+.+|+++.+++++.+++++.+++++.+..++.+.++++|
T Consensus        71 --------~~~~~~~~~~ig~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~I  142 (259)
T d1j2za_          71 --------KYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEI  142 (259)
T ss_dssp             --------SCCSCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             --------ccccccceEEeccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccc
Confidence                    0111123789999999999999887654   46899999999999999999999999999999999999999


Q ss_pred             CCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       205 g~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      |++|+||.++.|.++++||++|+|+++|+|+||+||++++.|+||+..
T Consensus       143 g~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kdVp~~~i~~G~PA~~~  190 (259)
T d1j2za_         143 GDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIR  190 (259)
T ss_dssp             CSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEE
T ss_pred             cccceecceeeeecccEeccceeeeeeeeeccccccceeEEecccccc
Confidence            999999999999999999999999999999999999999999999863

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=5.3e-28  Score=194.63  Aligned_cols=180  Identities=21%  Similarity=0.281  Sum_probs=126.8

Q ss_pred             Ecc-CcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-----cceEECCCcEECCCCEECC
Q 024191           49 FHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQ  122 (271)
Q Consensus        49 i~~-~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-----~~~~Ig~~~~I~~~~~i~~  122 (271)
                      |+| +++|+++++|+++++|+++++|++++.||++|+|+++++|. ++.|++++.|     ....+++++.|++++.++.
T Consensus         4 i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~   82 (196)
T d1g97a1           4 VNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNSMIEESSVADGVIVGPYAHIRP   82 (196)
T ss_dssp             SCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSCEEESCEECTTCEECSSCEECS
T ss_pred             eCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCccccccceeeccccCcceeecceeccc
Confidence            454 23466666666666666666666666666666666666553 3556666555     4456788888888888764


Q ss_pred             CCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-----ccccEECCCCEEcc-cc
Q 024191          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-----GHNVAIGKSCMLCG-QV  196 (271)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-----~~~~~ig~~~~i~~-~~  196 (271)
                                          .+.+++++.++..+.+..     ..+++.+.++..+.+     ..+..+++++.... ..
T Consensus        83 --------------------~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~  137 (196)
T d1g97a1          83 --------------------NSSLGAQVHIGNFVEVKG-----SSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDG  137 (196)
T ss_dssp             --------------------SCEECTTCEEEEEEEEES-----CEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSS
T ss_pred             --------------------ccccccceeeccccccee-----eecCcceEecceEEecceeecceeecCCCeEEeecce
Confidence                                677777777777766643     455555555554444     33444444444433 23


Q ss_pred             eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191          197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  254 (271)
Q Consensus       197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~  254 (271)
                      ...+++.||++|++|.++.|.++++||++++|+++|+|+||+||++++.|+||+.+++
T Consensus       138 ~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~~G~Pak~~k~  195 (196)
T d1g97a1         138 KNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKD  195 (196)
T ss_dssp             SCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCCCCCCCCC
T ss_pred             eeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEEEecCCEEecC
Confidence            3457899999999999999999999999999999999999999999999999998764

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.93  E-value=6.2e-25  Score=184.45  Aligned_cols=205  Identities=22%  Similarity=0.287  Sum_probs=154.4

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------------
Q 024191           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------------  104 (271)
Q Consensus        44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------------  104 (271)
                      ++++.|+|+|.|+++++|++++.|+++++|++++.||++|+|++++.|++++.+++++.+.                   
T Consensus         3 ~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~   82 (262)
T d2jf2a1           3 DKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPT   82 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCC
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCc
Confidence            4566677777777777777777777777777777777777777777777666666666551                   


Q ss_pred             ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  184 (271)
Q Consensus       105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~  184 (271)
                      .+.||+++.|++++.+....+.             ....+.||+++.+..+++|.    +++.||+++.+.+++.++.++
T Consensus        83 ~v~IG~~v~ig~~~~i~~~~~~-------------~~~~T~IG~~~~i~~~~~I~----h~~~IG~~~~i~~~~~i~g~~  145 (262)
T d2jf2a1          83 RVEIGDRNRIRESVTIHRGTVQ-------------GGGLTKVGSDNLLMINAHIA----HDCTVGNRCILANNATLAGHV  145 (262)
T ss_dssp             EEEECSSCEECTTCEEECCCTT-------------TTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTC
T ss_pred             eEEECCeeeecceEeccCcccc-------------CccceEECCCCEEecccccc----cccccCCCeeecCccccccce
Confidence            3678888888888888643210             00148999999999999998    789999999999999999999


Q ss_pred             EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCCCCCeEEcCCCchhhHHHHHHHHhh
Q 024191          185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITEPGDYGGFPAVPIHEWRRQVANQI  263 (271)
Q Consensus       185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~  263 (271)
                      .||++++++.++.+.++++||++++|++++.|.++  ++++++..+ ++.+..--..+-...|.....+..+++.++.++
T Consensus       146 ~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vtkd--vp~~~~~~G~PA~~~~~n~~gl~R~g~~~e~i~~lk~~~k~L~  223 (262)
T d2jf2a1         146 SVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIY  223 (262)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEBTEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             eeCceEEeccCceeccccEeehhceeeccceEeec--CCcccccCCCCceeeeeeccchhhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997  456666644 444332111111124566677777888888877


Q ss_pred             cccc
Q 024191          264 RSSK  267 (271)
Q Consensus       264 r~~~  267 (271)
                      ++.+
T Consensus       224 ~~~~  227 (262)
T d2jf2a1         224 RSGK  227 (262)
T ss_dssp             TSCC
T ss_pred             hcCC
Confidence            6654

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.7e-25  Score=178.74  Aligned_cols=183  Identities=21%  Similarity=0.307  Sum_probs=142.3

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  127 (271)
                      .|+..+.|+++++|+++|+|++++.||+++.|+++|+|...+ ++.++.+...+...++.++.++.++.++.+..     
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~-~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----   83 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSV-IGDDCEISPYTVVEDANLAAACTIGPFARLRP-----   83 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCE-ECTTCEECSSCEEESCEECTTCEECSSEEECT-----
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeec-cCCceeeeeeecccccccccccccCccccccc-----
Confidence            477777778888888888888778888888888888877554 45667777777778888888888888888764     


Q ss_pred             EEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccce-------ecc
Q 024191          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG-------IAG  200 (271)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~-------i~~  200 (271)
                                     ...+++.+.++..+.+.     .+.+|+++.+++.+.+ .++.+++++.++.++.       ..+
T Consensus        84 ---------------~~~~~~~~~i~~~~~~~-----~~~ig~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~  142 (201)
T d2oi6a1          84 ---------------GAELLEGAHVGNFVEMK-----KARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKF  142 (201)
T ss_dssp             ---------------TCEECTTCEEEEEEEEE-----EEEECTTCEEEEEEEE-EEEEECTTCEECTTCEEECBSSSCBC
T ss_pred             ---------------ceeeeeeeeecceeeee-----eeeeCCCeEEceeeee-cccCcCccccccCceeEeeccccccc
Confidence                           66677777776665553     4577777777665554 3556666666655543       334


Q ss_pred             CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-EcCCCchhhHHHH
Q 024191          201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRR  257 (271)
Q Consensus       201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~-~g~p~~~i~~~~~  257 (271)
                      ++.||+++++|.++.|.++++||++|+|+++|+|.||+||++++ .|.||+.++.|+|
T Consensus       143 ~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si~vg~~~~~~~~~~~r  200 (201)
T d2oi6a1         143 KTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWRR  200 (201)
T ss_dssp             CEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTTCCC
T ss_pred             ccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCEEEecccceEccCcCC
Confidence            69999999999999999999999999999999999999999985 5699999998875

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.92  E-value=4.5e-24  Score=179.00  Aligned_cols=203  Identities=18%  Similarity=0.176  Sum_probs=164.6

Q ss_pred             cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-------------cceEEC
Q 024191           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIG  109 (271)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-------------~~~~Ig  109 (271)
                      +++++.|+++|.|++++.|+++|+|++++.|++++.|+++++|.+++.||+++.+.+++.|             ....++
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig   82 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   82 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence            5678999999999999999999999999999999999999999999999999999999888             235677


Q ss_pred             CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  189 (271)
Q Consensus       110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~  189 (271)
                      +++.+++.+.+.....             .....+.||+++.+..++++.    +++.+|+++.+.+++.+..++.||++
T Consensus        83 ~~~~i~~~~~i~~~~~-------------~~~~~t~iG~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~g~v~Ig~~  145 (259)
T d1j2za_          83 EDNLIREFCMINPGTE-------------GGIKKTLIGDKNLLMAYVHVA----HDCVIGSHCILANGVTLAGHIEIGDY  145 (259)
T ss_dssp             SSCEECTTCEECCCCT-------------TTTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECSS
T ss_pred             cccccccccccccccc-------------cccccccccCceEEecccccc----ceecccceeeeecccccccccccccc
Confidence            7777777777753211             111378999999999999998    68999999999999999999999999


Q ss_pred             CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEeccCCCCCeEEcCCCchhhHHHHHHHHhhcc
Q 024191          190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRS  265 (271)
Q Consensus       190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r~  265 (271)
                      |+++.++.+.++++||++|+||++++|.++  |++++++.+. +.+.. +..-.+-.+...+.+..++++++.|+|-
T Consensus       146 v~IG~~s~I~~gv~IG~~a~IgagSvV~kd--Vp~~~i~~G~PA~~~g-~n~~~lr~~~~~~~~~~~~~~~~~l~~~  219 (259)
T d1j2za_         146 VNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVEGNRAFIRG-LNRHRMRQLLESKDIDFIYALYKRLFRP  219 (259)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETTBTEEEE-ECHHHHHHHSCHHHHHHHHHHHHHHTCS
T ss_pred             ceecceeeeecccEeccceeeeeeeeeccc--cccceeEEeccccccc-chhhhhccccchHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999997  4778877654 33321 2111122244555677777777776643

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.7e-22  Score=160.30  Aligned_cols=92  Identities=25%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEc
Q 024191          167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG  246 (271)
Q Consensus       167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g  246 (271)
                      .||+++.|++++++.......+.........+..+++||++|+||++++|.++++||++|+|+++|+|.+|+|++++++|
T Consensus        96 ~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~iv~G  175 (200)
T d1krra_          96 TIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAG  175 (200)
T ss_dssp             EECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEET
T ss_pred             EeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeEcCCCcEEEE
Confidence            33333333344444344444444444555666778999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHH
Q 024191          247 FPAVPIHEWRRQ  258 (271)
Q Consensus       247 ~p~~~i~~~~~~  258 (271)
                      +||+.++++.+.
T Consensus       176 ~PArvik~~~~~  187 (200)
T d1krra_         176 VPCRVIREINDR  187 (200)
T ss_dssp             TTTEEEEECCGG
T ss_pred             eCCEEEEeCCHH
Confidence            999999987544

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.86  E-value=5.9e-24  Score=171.86  Aligned_cols=68  Identities=35%  Similarity=0.359  Sum_probs=60.2

Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      ++........+.++++||++|+||.+++|+++++||++|+|+++|+|+||+|++++++|+||+.++.+
T Consensus       100 ~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G~PAk~ik~r  167 (203)
T d1mr7a_         100 KHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (203)
T ss_dssp             GGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             CcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEEeCCEEEecc
Confidence            33444445556778999999999999999999999999999999999999999999999999999865

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.86  E-value=1.8e-21  Score=153.24  Aligned_cols=94  Identities=21%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      ...||+++.++.++.+......++.+++++.+.+.+.+                   +++.|+++++|+.+++|.+++.|
T Consensus        51 ~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~-------------------~~~~i~~~~~ig~~~~i~~gv~I  111 (172)
T d1xhda_          51 PTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL-------------------HSCHIKKDALIGMGSIILDGAEI  111 (172)
T ss_dssp             EEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE-------------------ESCEECTTCEECTTCEECTTCEE
T ss_pred             cccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecc-------------------cccccccceEEecccEeeCCcEE
Confidence            34555555555555554433333444444443333332                   34677888888888888888888


Q ss_pred             CCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHH
Q 024191          223 ASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       223 g~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~  255 (271)
                      |++|+|+++|+|.  +++|+++++.|+||+.++.+
T Consensus       112 G~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~  146 (172)
T d1xhda_         112 GEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIREL  146 (172)
T ss_dssp             CTTCEECTTCEECTTCEECTTEEEEETTEEEEEEC
T ss_pred             cCcccccceEEEeeCeEECCCeEEEecCcEEECCC
Confidence            8888888888887  57899999999999887754

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.84  E-value=2.4e-20  Score=149.20  Aligned_cols=87  Identities=24%  Similarity=0.312  Sum_probs=81.0

Q ss_pred             eEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE
Q 024191          166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG  245 (271)
Q Consensus       166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~  245 (271)
                      +.||+++.+..++.+++++.|++++.+++++.+.++++||++|+||.+++|.++++||++++|+++|+|.+|+|+++++.
T Consensus       107 ~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~~  186 (193)
T d3bswa1         107 AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFV  186 (193)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEEC
T ss_pred             ceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcEEE
Confidence            46667777777888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchh
Q 024191          246 GFPAVPI  252 (271)
Q Consensus       246 g~p~~~i  252 (271)
                      |+||+.+
T Consensus       187 G~PAk~i  193 (193)
T d3bswa1         187 GVPAKRM  193 (193)
T ss_dssp             CCCCCCC
T ss_pred             EeCCEEC
Confidence            9999864

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.5e-20  Score=147.35  Aligned_cols=89  Identities=27%  Similarity=0.325  Sum_probs=75.1

Q ss_pred             eEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE
Q 024191          166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG  245 (271)
Q Consensus       166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~  245 (271)
                      ..||+++.|++++.+.+++.+.+.+....++.+.++++||++|+||.+++|.++++||++++|+++|+|++|+|+++++.
T Consensus        93 I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kdvp~~~i~~  172 (182)
T d1ocxa_          93 IRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVG  172 (182)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEE
T ss_pred             EEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEEccCCCCCeEEE
Confidence            35555555555566656666666666677777888899999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhH
Q 024191          246 GFPAVPIHE  254 (271)
Q Consensus       246 g~p~~~i~~  254 (271)
                      |+||+.+++
T Consensus       173 G~PAk~ir~  181 (182)
T d1ocxa_         173 GNPARIIKK  181 (182)
T ss_dssp             TTTTEEEEE
T ss_pred             eeCCEEEee
Confidence            999998875

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.81  E-value=7e-19  Score=140.57  Aligned_cols=168  Identities=17%  Similarity=0.248  Sum_probs=112.5

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECC----ccEE-cceEECCCcEECCCCEECC
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGF----NVAL-SNCIIGDSCIIHNGVCIGQ  122 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~----~~~I-~~~~Ig~~~~I~~~~~i~~  122 (271)
                      .|++++.|+++++|+++++|++++.||+++.|+++++|+ ++.||+++.|..    .+.+ .++.||+++.++.++.++.
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~~   88 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGA   88 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECT
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCccccccceeeccccCcceeecceeccccccccc
Confidence            577788888888888888888888888888888888775 466776666532    2222 3444555555555554443


Q ss_pred             CCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCc-------EEccccEECCCCEEccc
Q 024191          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLV-------QIGHNVAIGKSCMLCGQ  195 (271)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~-------~i~~~~~ig~~~~i~~~  195 (271)
                      ...-         ..........+++.+.++.++.+..     +.++.+..+.++.       ...+++.||+++|++.+
T Consensus        89 ~~~i---------~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~  154 (196)
T d1g97a1          89 QVHI---------GNFVEVKGSSIGENTKAGHLTYIGN-----CEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSN  154 (196)
T ss_dssp             TCEE---------EEEEEEESCEECTTCEEEEEEEEES-----EEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTT
T ss_pred             ceee---------cccccceeeecCcceEecceEEecc-----eeecceeecCCCeEEeecceeeeeeeEEecCCEEeee
Confidence            2100         0001112556677777776666643     3444444444433       34578899999999999


Q ss_pred             ceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191          196 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS  232 (271)
Q Consensus       196 ~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s  232 (271)
                      +.+.++++||++++||++++|.++  +++++++.+.+
T Consensus       155 ~~I~~gv~IG~~s~IgagsvVtkd--vp~~~i~~G~P  189 (196)
T d1g97a1         155 STIIAPVELGDNSLVGAGSTITKD--VPADAIAIGRG  189 (196)
T ss_dssp             CEEESSCEECTTCEECTTCEECSC--BCTTCEECCCC
T ss_pred             eEEcCCcEECCCCEECCCCEECcC--cCCCCEEEecC
Confidence            999999999999999999999987  67888877654

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.81  E-value=1.1e-18  Score=150.13  Aligned_cols=210  Identities=14%  Similarity=0.165  Sum_probs=135.9

Q ss_pred             ccc-CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCE
Q 024191           41 KWH-NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC  119 (271)
Q Consensus        41 ~~~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~  119 (271)
                      .|+ +..+.+++++.|.+++.|++++.|.+++.|++++.|+ ++.|.+++.|++++.|++++.+.++.+..++.+.+++.
T Consensus        57 ~wv~~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~  135 (320)
T d2f9ca1          57 CWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSE  135 (320)
T ss_dssp             CEECSTTCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCE
T ss_pred             CEEECCCcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcE
Confidence            344 4456677777777777777777777777777777775 56777777777777777777776667777777766666


Q ss_pred             ECCCCceeEEccCC-ceecCCcee---------------------------------------ceEECCCcEECCccEEe
Q 024191          120 IGQDGFGFFVDEHG-NMLKKPQLL---------------------------------------NARIGNHVEIGANSCID  159 (271)
Q Consensus       120 i~~~~~~~~~~~~~-~~~~~~~~~---------------------------------------~~~Ig~~~~I~~~~~i~  159 (271)
                      +............. .....+...                                       .+.+..++.++.++.+.
T Consensus       136 i~g~~~~~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~~a~V~g~a~i~g~v~~~~~v~~~~~v~gn~~I~  215 (320)
T d2f9ca1         136 ILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVI  215 (320)
T ss_dssp             ECCCCCCSSSTTCCCEECSSCEEESCEECSSCEECSSCEEESCEECSSCEECSSCEEECCSSCCCEECSSCEECSSCEEE
T ss_pred             EECCCceeecccCcceecccceeeeeEEeeeeeeCCCccccceeeccceEEeeeeeecceeeccccccccccccccchhc
Confidence            64321100000000 000001111                                       12222233333333333


Q ss_pred             CCCc--------CCeEECCCcEECCCcEEccccEECCCCEEccc-ceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          160 RGSW--------RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ-VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       160 ~~~~--------~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~-~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      .+..        .++.|++++.+..++.+.+++.|++++.+.++ +.+.++++|++++.|++++.|.+++.|++++.|++
T Consensus       216 ~~~~i~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a  295 (320)
T d2f9ca1         216 AGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIA  295 (320)
T ss_dssp             CCSSTTCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEEC
T ss_pred             CCeeeecccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEE
Confidence            2211        45677777777778888888888888888655 46777788999999999999999999999999988


Q ss_pred             CcEEeccCCCCCeEEcCCCch
Q 024191          231 NSCVFKDITEPGDYGGFPAVP  251 (271)
Q Consensus       231 ~s~v~~~~~~~~~~~g~p~~~  251 (271)
                      .+-.+.+++++..+.|.++..
T Consensus       296 ~~~~~~~l~g~~~i~G~~~i~  316 (320)
T d2f9ca1         296 FDDNTIHLRGPKVINGEDRIT  316 (320)
T ss_dssp             CSSCCEEECSSEEECSSCEEC
T ss_pred             ecCCeEEccCCcEEcCccccc
Confidence            888888888888887776643

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=1e-19  Score=143.13  Aligned_cols=56  Identities=25%  Similarity=0.371  Sum_probs=47.4

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHH
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~  255 (271)
                      ..+.||++|+||.+++|.+++.||++++|+++|+|.  +++||+++++|+||+.++++
T Consensus        87 ~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~  144 (173)
T d1v3wa_          87 HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQL  144 (173)
T ss_dssp             ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEEC
T ss_pred             eeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCC
Confidence            457788888888888888888888888888888887  47899999999999988764

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.78  E-value=1.3e-19  Score=146.77  Aligned_cols=69  Identities=20%  Similarity=0.237  Sum_probs=44.5

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  235 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~  235 (271)
                      ++.||+++.|++++.+..++.||++++|+.++.+.+ .+||++|+|++++++ .++.+++++.|.+++++.
T Consensus       103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv-~g~~i~~g~~I~~g~~v~  171 (210)
T d1qrea_         103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVT  171 (210)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ESCEECTTBEECTTCEEC
T ss_pred             ceeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEe-cCcEeCCCcEECCCcEEe
Confidence            355555555556666656677777777777777765 467888888777766 345566666665555554

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=1.1e-18  Score=140.77  Aligned_cols=59  Identities=24%  Similarity=0.270  Sum_probs=55.4

Q ss_pred             eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191          197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  255 (271)
Q Consensus       197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~  255 (271)
                      .+.++++|||+|+||++++|.++++||++|+|+++|+|++|+|++++++|+||+.++.+
T Consensus       104 ~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~~G~PAk~ik~R  162 (208)
T d1xata_         104 QPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR  162 (208)
T ss_dssp             CCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             cccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEEEecCCEEEecc
Confidence            34567999999999999999999999999999999999999999999999999998874

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.73  E-value=2.5e-17  Score=133.18  Aligned_cols=71  Identities=21%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe-------ccCCCCCeEEc-CCCchhh
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF-------KDITEPGDYGG-FPAVPIH  253 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~-------~~~~~~~~~~g-~p~~~i~  253 (271)
                      +++.||++++|+.++.+.++++||++++||++++|.+. +||++++|++++++.       +.+|+++++.| .|++.++
T Consensus       102 ~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v~g~~~~~~i~  180 (210)
T d1qrea_         102 YAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLP  180 (210)
T ss_dssp             ESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEEESCEECTTBEECTTCEECSHHHHHTCC
T ss_pred             cceeeccccccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEecCcEeCCCcEECCCcEEeCCCcccccc
Confidence            34445555555555555555555555555555555432 455555555554443       33455555544 2444433

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.3e-17  Score=130.69  Aligned_cols=167  Identities=17%  Similarity=0.249  Sum_probs=110.0

Q ss_pred             cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEEC-----CCCEECCccEE-cceEECCCcEE
Q 024191           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG-----QSTNIGFNVAL-SNCIIGDSCII  114 (271)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig-----~~~~Ig~~~~I-~~~~Ig~~~~I  114 (271)
                      .+++....|++++.|++++.|++++.|++++.|++++.|+..+.+. +..+.     .++.++.++.+ ..+.+...+.+
T Consensus         9 ~~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~   87 (201)
T d2oi6a1           9 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGD-DCEISPYTVVEDANLAAACTIGPFARLRPGAEL   87 (201)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECT-TCEECSSCEEESCEECTTCEECSSEEECTTCEE
T ss_pred             EEECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCC-ceeeeeeecccccccccccccCcccccccceee
Confidence            3455556677777777777777777777777777777776554433 22222     33344444444 33344444444


Q ss_pred             CCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-------ccccEEC
Q 024191          115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIG  187 (271)
Q Consensus       115 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-------~~~~~ig  187 (271)
                      +..+.++..               .....+.+|+++.++..+.+.     ++.+++++.+..++..       ..++.|+
T Consensus        88 ~~~~~i~~~---------------~~~~~~~ig~~~~i~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig  147 (201)
T d2oi6a1          88 LEGAHVGNF---------------VEMKKARLGKGSKAGHLTYLG-----DAEIGDNVNIGAGTITCNYDGANKFKTIIG  147 (201)
T ss_dssp             CTTCEEEEE---------------EEEEEEEECTTCEEEEEEEEE-----EEEECTTCEECTTCEEECBSSSCBCCEEEC
T ss_pred             eeeeeecce---------------eeeeeeeeCCCeEEceeeeec-----ccCcCccccccCceeEeecccccccccEeC
Confidence            444443210               001267788888887776664     4667777777666543       3468999


Q ss_pred             CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      ++++++.++.+.++++||+++.|+++++|.+++  ++++++-+
T Consensus       148 ~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdV--p~~si~vg  188 (201)
T d2oi6a1         148 DDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNV--GENALAIS  188 (201)
T ss_dssp             TTCEECTTCEEESSEEECTTCEECTTCEECSCB--CTTCEECC
T ss_pred             CcEEEeEeeeEcCCcEECCCCEECCCCEEeeec--CCCCEEEe
Confidence            999999999999999999999999999999974  78887444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=2.1e-16  Score=123.69  Aligned_cols=137  Identities=18%  Similarity=0.232  Sum_probs=88.6

Q ss_pred             CCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCce
Q 024191           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (271)
Q Consensus        56 ~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~  135 (271)
                      +..++|+++|+|+++++|.+++.||++|.|+++++|+.+        ...+.||+++.+++++.+.....          
T Consensus        10 ~~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~--------~~~i~IG~~~~i~~~~~~~~~~~----------   71 (172)
T d1xhda_          10 EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGD--------VSPTIIGDRVNVQDQCTLHQSPQ----------   71 (172)
T ss_dssp             TBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE--------EEEEEECTTCEECTTCEEECCTT----------
T ss_pred             CcCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccc--------cccccccceeeeeeeceeccCCc----------
Confidence            344455555555555555555555555554444444211        12357888888888887753221          


Q ss_pred             ecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccE
Q 024191          136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA  215 (271)
Q Consensus       136 ~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~  215 (271)
                            ..+++|+++.+..++.+..                 +.+      +++++++.++.+.++++||++|+|+++++
T Consensus        72 ------~~~~ig~~~~~~~~~~~~~-----------------~~i------~~~~~ig~~~~i~~gv~IG~~~~Igagsv  122 (172)
T d1xhda_          72 ------YPLILEDDVTVGHQVILHS-----------------CHI------KKDALIGMGSIILDGAEIGEGAFIGAGSL  122 (172)
T ss_dssp             ------CCEEECTTCEECTTCEEES-----------------CEE------CTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ------CCeeeeeeeeeeeeecccc-----------------ccc------ccceEEecccEeeCCcEEcCcccccceEE
Confidence                  2578888888888777642                 222      23444445555577899999999999999


Q ss_pred             ECCCCEECCCcEEcC-CcEEeccCC
Q 024191          216 VRDHVSIASKVRLAA-NSCVFKDIT  239 (271)
Q Consensus       216 i~~~~~ig~~~~i~~-~s~v~~~~~  239 (271)
                      |.++..|++++++.+ ++.+.++++
T Consensus       123 V~~~~~i~~~~v~~G~Pak~i~~~~  147 (172)
T d1xhda_         123 VSQGKKIPPNTLAFGRPAKVIRELT  147 (172)
T ss_dssp             ECTTCEECTTEEEEETTEEEEEECC
T ss_pred             EeeCeEECCCeEEEecCcEEECCCC
Confidence            999999999998854 566777666

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=5.4e-16  Score=127.39  Aligned_cols=53  Identities=19%  Similarity=0.355  Sum_probs=51.0

Q ss_pred             cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191          200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  252 (271)
Q Consensus       200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i  252 (271)
                      .+.+|||+++||+|++|.++++||++++||++|+|+||+|++++++|+||+.+
T Consensus       188 ~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kdVp~~~vv~G~PAr~I  240 (241)
T d1ssqa_         188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV  240 (241)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTTTEEC
T ss_pred             CCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCCCCCCCEEEecCcEEe
Confidence            46899999999999999999999999999999999999999999999999976

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1e-15  Score=122.25  Aligned_cols=67  Identities=25%  Similarity=0.320  Sum_probs=53.6

Q ss_pred             CcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCC
Q 024191          171 HSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDIT  239 (271)
Q Consensus       171 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~  239 (271)
                      ......+..+..++.||++|||+.++.+.++++||++|.|+++++|.++  |++++++.+ ++.+.|++.
T Consensus       118 ~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kd--vp~~~iv~G~PArvik~~~  185 (200)
T d1krra_         118 HELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREIN  185 (200)
T ss_dssp             TTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             ecccccceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeE--cCCCcEEEEeCCEEEEeCC
Confidence            3333445556678999999999999999999999999999999999986  578887654 456666665

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=6.9e-15  Score=115.01  Aligned_cols=74  Identities=23%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEeccCC
Q 024191          165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDIT  239 (271)
Q Consensus       165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~~~~  239 (271)
                      ++.++.++..... .+.+.+.||++++++.++.+.++++||++|+|+++++|.+++.|++++++++. +.+.++++
T Consensus        71 ~~~~~~~~~~~~~-~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~  145 (173)
T d1v3wa_          71 PTEIGEYVTIGHN-AMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLT  145 (173)
T ss_dssp             CEEECSSCEECTT-CEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             CcccCcceeeeee-eeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCC
Confidence            3444444444432 33467889999999999999999999999999999999999999999998654 44556554

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.61  E-value=2.5e-14  Score=122.56  Aligned_cols=196  Identities=13%  Similarity=0.164  Sum_probs=117.5

Q ss_pred             ccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEE
Q 024191           50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV  129 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~  129 (271)
                      +++|.+.+++.|+++++|++++.|++++.|++++.|+ ++.|.+++.|++++.|.+..+-.++.+..++.+....   ..
T Consensus        61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a---~i  136 (320)
T d2f9ca1          61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQS---EI  136 (320)
T ss_dssp             STTCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSC---EE
T ss_pred             CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCc---EE
Confidence            4567777777777777777777777777777777775 5677777777777777444433455565566654321   11


Q ss_pred             ccCCceecCCceeceEE-----------CCCcEECCccEEeCCC-----------------------------cCCeEEC
Q 024191          130 DEHGNMLKKPQLLNARI-----------GNHVEIGANSCIDRGS-----------------------------WRDTVIG  169 (271)
Q Consensus       130 ~~~~~~~~~~~~~~~~I-----------g~~~~I~~~~~i~~~~-----------------------------~~~~~ig  169 (271)
                      .......... .....+           ..++.|+.++.+....                             ..++.|+
T Consensus       137 ~g~~~~~~~~-~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~~a~V~g~a~i~g~v~~~~~v~~~~~v~gn~~I~  215 (320)
T d2f9ca1         137 LAIQGLTHEH-AQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVI  215 (320)
T ss_dssp             CCCCCCSSST-TCCCEECSSCEEESCEECSSCEECSSCEEESCEECSSCEECSSCEEECCSSCCCEECSSCEECSSCEEE
T ss_pred             ECCCceeecc-cCcceecccceeeeeEEeeeeeeCCCccccceeeccceEEeeeeeecceeeccccccccccccccchhc
Confidence            1111111110 111222           2234444444332210                             0124444


Q ss_pred             CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEcccc-EECCCCEECCCcEEcCCcEEeccC--CCCCeEEc
Q 024191          170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV-AVRDHVSIASKVRLAANSCVFKDI--TEPGDYGG  246 (271)
Q Consensus       170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~-~i~~~~~ig~~~~i~~~s~v~~~~--~~~~~~~g  246 (271)
                      .++.+..++.+..++.|++++.+.+++.+.+++.|++++.|.+++ .+.+.+.|++++.|++++.|..++  .+.+.+..
T Consensus       216 ~~~~i~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a  295 (320)
T d2f9ca1         216 AGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIA  295 (320)
T ss_dssp             CCSSTTCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEEC
T ss_pred             CCeeeecccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEE
Confidence            445555566666777777777777777777788888888886665 456668888888888888888764  56666554


Q ss_pred             CCCc
Q 024191          247 FPAV  250 (271)
Q Consensus       247 ~p~~  250 (271)
                      .+..
T Consensus       296 ~~~~  299 (320)
T d2f9ca1         296 FDDN  299 (320)
T ss_dssp             CSSC
T ss_pred             ecCC
Confidence            4443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.61  E-value=1.4e-14  Score=115.23  Aligned_cols=60  Identities=23%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             CCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191          169 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  230 (271)
Q Consensus       169 g~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~  230 (271)
                      |+++.+++++.+..++.||++|+|+.++.+.++++||++|.||++++|.++  +++++++.+
T Consensus       128 g~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~d--v~~~~~~~G  187 (193)
T d3bswa1         128 GEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVG  187 (193)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSCCEECC
T ss_pred             cccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECcC--CCCCcEEEE
Confidence            333344444555567778888888888888899999999999999999987  467776654

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.56  E-value=4.5e-14  Score=114.92  Aligned_cols=65  Identities=22%  Similarity=0.356  Sum_probs=39.5

Q ss_pred             CCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        45 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      .+.++-|++.++..+.|++++++. ++++.-+++||++|+|...++||..+.           ||++|+|++++.|+
T Consensus       101 ~g~RvvPga~VR~GayI~~~vVlm-ps~VNigA~ig~~~midt~a~vgs~aq-----------IG~~vhis~g~~ig  165 (274)
T d3tdta_         101 EGFRVVPPATVRQGAFIARNTVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQ-----------IGKNVHLSGGVGIG  165 (274)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEEC-SEEECTTCEECTTCEECTTEEECTTCE-----------ECTTCEECTTCEEC
T ss_pred             CCEEeCCCceeccCcEECCCcEEe-eeEeccccEEcCCcEEcccceecceeE-----------ECCCeEECCCcEEE
Confidence            345566666666666666666554 356666666666666665555555444           55666666666664

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.5e-14  Score=112.41  Aligned_cols=68  Identities=22%  Similarity=0.327  Sum_probs=53.5

Q ss_pred             ECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEecc
Q 024191          168 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKD  237 (271)
Q Consensus       168 ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~  237 (271)
                      +++......++.++.++.||+++|++.++.+.++++||++|.||++++|.++  +++++++.+ ++.+.|.
T Consensus       113 ~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd--vp~~~i~~G~PAk~ir~  181 (182)
T d1ocxa_         113 PIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             CSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEE
T ss_pred             ccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEEccC--CCCCeEEEeeCCEEEee
Confidence            3444445556667788899999999999999999999999999999999986  678887644 4455443

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.49  E-value=8.4e-15  Score=109.85  Aligned_cols=13  Identities=15%  Similarity=-0.143  Sum_probs=5.6

Q ss_pred             ECCCcEECCCCEE
Q 024191          108 IGDSCIIHNGVCI  120 (271)
Q Consensus       108 Ig~~~~I~~~~~i  120 (271)
                      +++++.|+++|.|
T Consensus        69 i~~~v~Ig~~~~I   81 (135)
T d1yp2a1          69 GSVPIGIGKNCHI   81 (135)
T ss_dssp             TCCCSEECTTCEE
T ss_pred             cCCCCEECcceEe
Confidence            3444444444444

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.47  E-value=5.5e-15  Score=118.56  Aligned_cols=135  Identities=19%  Similarity=0.107  Sum_probs=83.1

Q ss_pred             CcEECCCcEECCCCEECCC-cEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEEC
Q 024191           70 KAVLGANVCIGSGTVVGPA-VTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIG  147 (271)
Q Consensus        70 ~~~Ig~~v~Ig~~~~I~~~-~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig  147 (271)
                      .+.+++++.||++++|.+. ..+++.+.++.++.| .++.||++|.|++++.|....                  ...++
T Consensus        23 ~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~------------------~~~i~   84 (203)
T d1mr7a_          23 ILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNG------------------ANHRM   84 (203)
T ss_dssp             HHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGG------------------GCCCC
T ss_pred             CeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeec------------------CcEec
Confidence            3333444444444444322 222234445555555 346677777777777664211                  23334


Q ss_pred             CCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE
Q 024191          148 NHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR  227 (271)
Q Consensus       148 ~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~  227 (271)
                      +++.+....       ....+.++........+.+++.||++|+|+.++.+.++++||++|.|+++++|.++  ++++++
T Consensus        85 d~~~~~~~~-------~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kd--v~~~~i  155 (203)
T d1mr7a_          85 DGSTYPFNL-------FGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYML  155 (203)
T ss_dssp             SSCCCCGGG-------GCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEE
T ss_pred             cCceEeeee-------ecccccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeee--CCCCEE
Confidence            443333222       11223344445555666788999999999999999999999999999999999986  578887


Q ss_pred             EcCC
Q 024191          228 LAAN  231 (271)
Q Consensus       228 i~~~  231 (271)
                      +++.
T Consensus       156 ~~G~  159 (203)
T d1mr7a_         156 AGGN  159 (203)
T ss_dssp             EEET
T ss_pred             EEEe
Confidence            7655

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.46  E-value=1.5e-14  Score=108.52  Aligned_cols=43  Identities=12%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             cEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEEC
Q 024191           71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIH  115 (271)
Q Consensus        71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~  115 (271)
                      ++|+++|.|. ++.|. +++||++|.|++++.|.++.+.+++.+.
T Consensus        15 s~Ig~g~~I~-~~~i~-~s~IG~~~~Ig~~~~I~~~~i~~~~~~~   57 (135)
T d1yp2a1          15 SVIGEGCVIK-NCKIH-HSVVGLRSCISEGAIIEDSLLMGADYYE   57 (135)
T ss_dssp             EEECTTCEEE-EEEEE-SCEECTTCEECTTCEEESCEECCCSSCC
T ss_pred             CEECCCCEEe-CCEEe-ccccCCcEEECCCCEEEcCEEECCCEEe
Confidence            4444444443 23332 3455555555555555444444444443

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.45  E-value=7.2e-13  Score=107.77  Aligned_cols=41  Identities=10%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  222 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i  222 (271)
                      .++.|+++|.||.++.+..++.||++++|++|++|.+.+.|
T Consensus       174 ~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i  214 (274)
T d3tdta_         174 NPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRI  214 (274)
T ss_dssp             SCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCE
T ss_pred             CCcEEecCcEeccCceEecCEEecCceEeccceEEeccccc
Confidence            34556666666666666666777777777777777665543

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=8.4e-14  Score=93.78  Aligned_cols=55  Identities=25%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             ECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191           67 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (271)
Q Consensus        67 I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~  121 (271)
                      |.+++.||+++.|+++++|++++.||++|.|+++|.|.+++|++++.|++++.|.
T Consensus        11 I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~   65 (78)
T d1fxja1          11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE   65 (78)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEE
T ss_pred             EeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEE
Confidence            3344445555555555555555555555566666666666666666666666664

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.4e-13  Score=90.15  Aligned_cols=69  Identities=22%  Similarity=0.340  Sum_probs=62.5

Q ss_pred             EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCC
Q 024191           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG  117 (271)
Q Consensus        48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~  117 (271)
                      .|..++.|++++.|++++.|++++.||++|.||++|+|. ++.|++++.|++++.|.+++|+++|.||+.
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~-~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEe-cCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            477888899999999999999999999999999999997 788999999999999999999999999874

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.25  E-value=2.7e-12  Score=102.82  Aligned_cols=56  Identities=14%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEe
Q 024191          178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVF  235 (271)
Q Consensus       178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~  235 (271)
                      ..+.+++.||++|+||.++.+.++++||++|+||++++|.+++  ++++++ |-++.+.
T Consensus       103 ~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdv--p~~si~~G~PAk~i  159 (208)
T d1xata_         103 YQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDV--EPYAIVGGNPARTI  159 (208)
T ss_dssp             CCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCB--CTTEEEETTTTEEE
T ss_pred             ccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecC--CcCcEEEecCCEEE
Confidence            3445679999999999999999999999999999999999875  566655 4445544

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.14  E-value=1.7e-10  Score=94.11  Aligned_cols=48  Identities=17%  Similarity=0.328  Sum_probs=42.2

Q ss_pred             cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191          182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  231 (271)
Q Consensus       182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~  231 (271)
                      .+..||++++||.++.|.++++||+++.||++++|.++  +++++++.+.
T Consensus       188 ~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kd--Vp~~~vv~G~  235 (241)
T d1ssqa_         188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGV  235 (241)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETT
T ss_pred             CCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCC--CCCCCEEEec
Confidence            56889999999999999999999999999999999997  4677777553