Citrus Sinensis ID: 024224

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPQEIIVPDSIKDPKSLQK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccccccEEccccEEEEEEEEccccEEccccEEEcccccEEEccccccccccEEEEcccccccccccEEEccccEEccccEEEcEEEccccEEEEccEEccccEEccccEEccccccccccEEccccEEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHcHHccccccHHHHccccccHHHcccccccccccEEEccccEEEEEEEEccccEEccEEEEEccccEEEEcccccccccEEEEEcccccccccccEEEcccEEEccEEEEEEEEEcccEEEEccEEEEcccEEcccEEEEEccccccccEccccEEEEcccHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHcccEccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MGTLGRAVYTVGFWIRETGQALDRLGcrlqgnyyFQEQLSRHRTLMnifdkapavdkdafvapsasiigdvqvgrgssiwygcvlrgdvnsisvgsgtniqdnSLVHVAKsnlsgkvlpttigdnvtvGHSAVlhgctvedeafvgmGATLLDGVVVERHGMvaagslvrqntripsgevwggnpakFLRKLTDEEIAFISQSATNYSNLAQVHAAenaksfdeIEFEKVLRKKFARRDEEYDSmlgvvretpqeiivpdsikdpkslqk
Flexible Loop (DISEMBL)
MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVaagslvrqntripsgevwggnPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAenaksfdeiefEKVLRKKFArrdeeydsmlgvvretpqeiivpdsikdpkslqk
Low Complexity Region (SEG)
MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPQEIIVPDSIKDPKSLQK
Disordered region (IsUnstruct)
****GRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFAR****Y*SMLGVV*********************
Disordered Region (DISOPRED)
****GRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENA**FDEIEFEKVLRKKFARRDEEYDSMLGVVRETPQEIIV************
Disordered Region (DISEMBL)
MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPQEIIVPDSIKDPKSLQK
Disordered Region (DISPRO)
*GTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPQEIIVPDSIK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPQEIIVPDSIKDPKSLQK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9FWR5	275	Gamma carbonic anhydrase	yes	no	1.0	0.981	0.840	1e-135
Q9C6B3	278	Gamma carbonic anhydrase	no	no	0.970	0.942	0.801	1e-128
Q94AU7	258	Gamma carbonic anhydrase	no	no	0.951	0.996	0.734	1e-114
Q54JC2	246	Uncharacterized protein D	yes	no	0.862	0.947	0.415	4e-49
Q9FMV1	252	Gamma carbonic anhydrase-	no	no	0.703	0.753	0.407	4e-34
Q9SMN1	256	Gamma carbonic anhydrase-	no	no	0.651	0.687	0.414	1e-33
P0A9X0	184	Protein YrdA OS=Shigella	no	no	0.585	0.858	0.459	4e-33
P0A9W9	184	Protein YrdA OS=Escherich	N/A	no	0.585	0.858	0.459	4e-33
Q57752	159	Uncharacterized protein M	yes	no	0.562	0.955	0.424	7e-32
P40882	174	Uncharacterized protein P	no	no	0.562	0.873	0.373	6e-28

>sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/270 (84%), Positives = 249/270 (92%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA Y+VGFWIRETGQALDRLGCRLQG  YF+EQLSRHRTLMN+FDKAP VDK+AF
Sbjct: 1   MGTLGRAFYSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSAS+IGDV +GRGSSIWYGCVLRGDVN++SVGSGTNIQDNSLVHVAKSNLSGKV PT
Sbjct: 61  VAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVT+GHSAVLHGCTVEDE F+GMGATLLDGVVVE+HGMVAAG+LVRQNTRIPSGEV
Sbjct: 121 IIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPA+FLRKLTDEEIAFISQSATNYSNLAQ HAAENAK  + IEFEKVLRKK A +DE
Sbjct: 181 WGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSIKDPKSLQK 270
           EYDSMLG+VRETP E+ +P++I   K  ++
Sbjct: 241 EYDSMLGIVRETPPELNLPNNILPDKETKR 270

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q9C6B3|GCA2_ARATH Gamma carbonic anhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA2 PE=1 SV=1

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 210/262 (80%), Positives = 244/262 (93%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+YTVG WIR TGQALDR+G  LQG++  +E LSRHRTLMN+FDK+P VDKD F
Sbjct: 1   MGTLGRAIYTVGNWIRGTGQALDRVGSLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSAS+IGDVQ+G+GSSIWYGCVLRGDVN+ISVGSGTNIQDN+LVHVAK+N+SGKVLPT
Sbjct: 61  VAPSASVIGDVQIGKGSSIWYGCVLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAV+HGCTVED+AFVGMGATLLDGVVVE+H MVAAGSLV+QNTRIPSGEV
Sbjct: 121 LIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKF+RKLTDEEI +ISQSA NY NLAQ+HA+EN+KSF++IE E+ LRKK+AR+DE
Sbjct: 181 WGGNPAKFMRKLTDEEIVYISQSAKNYINLAQIHASENSKSFEQIEVERALRKKYARKDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI 262
           +YDSMLG+ RETP E+I+PD++
Sbjct: 241 DYDSMLGITRETPPELILPDNV 262

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide (PubMed:19808034). Mediates complex I assembly in mitochondria and respiration. Binds HCO(3)-. Required for male fertility during anther development and dehiscence to regulate the secondary thickenings of the endothecial cell wall, probably by modulating H(2)O(2)-dependent lignin polymerization.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q94AU7|GCA3_ARATH Gamma carbonic anhydrase 3, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA3 PE=1 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/267 (73%), Positives = 227/267 (85%), Gaps = 10/267 (3%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGT+G+A Y+VGFWIRETGQALDRLGCRLQG  +F+EQLSRHRTLMN+FDK P VDK AF
Sbjct: 1   MGTMGKAFYSVGFWIRETGQALDRLGCRLQGKNHFREQLSRHRTLMNVFDKTPNVDKGAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAP+AS+ GDV VGRGSSIWYGCVLRGD NSISVG+GTNIQDN+LVHVAK+NLSGKVLPT
Sbjct: 61  VAPNASLSGDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQDNALVHVAKTNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVT+GHSAVLHGCTVEDEA++G  AT+LDG  VE+H MVA+G+LVRQNTRIPSGEV
Sbjct: 121 VIGDNVTIGHSAVLHGCTVEDEAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIPSGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRK+T+EE  F S SA  YSNLAQ HA ENAK+ DE EF+K+L KK A RD 
Sbjct: 181 WGGNPAKFLRKVTEEERVFFSSSAVEYSNLAQAHATENAKNLDEAEFKKLLNKKNA-RDT 239

Query: 241 EYDSMLGVVRETPQEIIVPDSIKDPKS 267
           EYDS+L        ++ +P+++  PK+
Sbjct: 240 EYDSVL-------DDLTLPENV--PKA 257

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q54JC2|Y2881_DICDI Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/236 (41%), Positives = 150/236 (63%), Gaps = 3/236 (1%)

Query: 11  VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGD 70
           +G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP V + +F+AP+ASIIGD
Sbjct: 10  LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGD 69

Query: 71  VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130
           V +G+ SSIWY  VLRGDVNSI +G  T + D ++VH + +   G   PT IGD V +G 
Sbjct: 70  VVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGPK-PTQIGDKVYIGP 128

Query: 131 SAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 190
            +++H  T+  E+F+G G+TL DG VVE++G + AGSL+     I SGE WGG+PAKF+R
Sbjct: 129 GSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIR 188

Query: 191 KLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSML 246
           ++T ++ + + +      NL++ H  + +KS  E+  +  L +K+ +     D +L
Sbjct: 189 QVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNND--LLQKYVKNRTRSDHIL 242

Dictyostelium discoideum (taxid: 44689)

>sp|Q9FMV1|GCAL1_ARATH Gamma carbonic anhydrase-like 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL1 PE=1 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 4/194 (2%)

Query: 42  HRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ 101
            R ++ +    P V  DA+VAP+  + G V V  GSS+W G VLRGD+N I+VG  +N+Q
Sbjct: 55  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQ 114

Query: 102 DNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHG 161
           +  +VH A S+ +G    T I   VTVG  ++L  CT+E E  +G  + L++G +VE   
Sbjct: 115 ERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRS 174

Query: 162 MVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE---N 218
           ++ AGS+V    RIPSGE+WGGNPA+F+R LT+EE   I + A   ++L+  + +E    
Sbjct: 175 ILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPY 234

Query: 219 AKSFDEIE-FEKVL 231
           +  + E+E F+K L
Sbjct: 235 STVYLEVEKFKKSL 248

Involved in complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMN1|GCAL2_ARATH Gamma carbonic anhydrase-like 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL2 PE=1 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 110/176 (62%)

Query: 42  HRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ 101
            R ++ +    P V  DA+VAP+  + G V V  GSS+W G VLRGD+N I+VG  +N+Q
Sbjct: 59  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQ 118

Query: 102 DNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHG 161
           +  +VH A S+ +G    T I   VTVG  ++L  CT+E E  +G  + L++G +VE   
Sbjct: 119 ERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRS 178

Query: 162 MVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 217
           ++ AGS++    RIPSGE+WGGNPA+F+R LT+EE   I + A   ++L+  + +E
Sbjct: 179 ILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSE 234

Involved in complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

>sp|P0A9X0|YRDA_SHIFL Protein YrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 50  DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
           D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV 
Sbjct: 10  DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 69

Query: 110 -KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168
            KS+ +    P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSL
Sbjct: 70  HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 129

Query: 169 VRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 207
           V QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct: 130 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168

Shigella flexneri (taxid: 623)

>sp|P0A9W9|YRDA_ECOLI Protein YrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 50  DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
           D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV 
Sbjct: 10  DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 69

Query: 110 -KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168
            KS+ +    P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSL
Sbjct: 70  HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 129

Query: 169 VRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 207
           V QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct: 130 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q57752|Y304_METJA Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0304 PE=3 SV=1

 Score =  137 bits (346), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS 114
           + K+  +A  A I+GDV +G  SS+WY  V+RGDV+ I +G+ +NIQD  +VH +K    
Sbjct: 2   ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKG--- 58

Query: 115 GKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTR 174
               PT IGD V++GH AV+HGC +ED   VGM AT+L+G  +  + ++ A +LV QN  
Sbjct: 59  ---YPTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNKE 115

Query: 175 IPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
           IP   +  G P + +R+LT+EEI  I ++A  Y  L++
Sbjct: 116 IPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSE 153

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P40882|Y3753_PSEAE Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3753 PE=3 SV=2

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 102/158 (64%), Gaps = 6/158 (3%)

Query: 58  DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKV 117
           D+++APSA++IG V++  G+S+W+G VLRGD   I +G  +N+QD S++H          
Sbjct: 15  DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMG------ 68

Query: 118 LPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS 177
            P T+G  VTVGH+A+LHGC+V D + VG+ A +L+G  + ++ ++ A +L+ +   IP 
Sbjct: 69  YPLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPD 128

Query: 178 GEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHA 215
           G +  G+P K +R+L++ +   +  SA +Y + A+ +A
Sbjct: 129 GSLVMGSPGKVVRELSEPQKKMLEASAAHYVHNARRYA 166

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
449469963	273	PREDICTED: gamma carbonic anhydrase 1, m	1.0	0.989	0.904	1e-144
255538692	271	Protein yrdA, putative [Ricinus communis	0.996	0.992	0.911	1e-144
225458237	272	PREDICTED: uncharacterized protein DDB_G	0.996	0.988	0.900	1e-142
255538694	271	Protein yrdA, putative [Ricinus communis	0.992	0.988	0.885	1e-142
224082886	271	predicted protein [Populus trichocarpa]	0.988	0.985	0.892	1e-142
224066191	271	predicted protein [Populus trichocarpa]	0.970	0.966	0.916	1e-141
449457524	271	PREDICTED: gamma carbonic anhydrase 1, m	0.970	0.966	0.908	1e-141
449499995	271	PREDICTED: gamma carbonic anhydrase 1, m	0.970	0.966	0.900	1e-140
225458239	280	PREDICTED: uncharacterized protein DDB_G	0.996	0.960	0.875	1e-140
224134252	271	predicted protein [Populus trichocarpa]	0.988	0.985	0.874	1e-138

>gi|449469963|ref|XP_004152688.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus] gi|449520036|ref|XP_004167040.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/273 (90%), Positives = 263/273 (96%), Gaps = 3/273 (1%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLG+A+YTVGFWIRETGQA+DRLGCRLQG Y+FQEQLSRHRTLMN+FDKAP VDKDAF
Sbjct: 1   MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGRYFFQEQLSRHRTLMNVFDKAPVVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVT+GHSAV+HGCTVEDEAFVGMGATLLDGVVVE++ MVAAG+LVRQNT+IPSGEV
Sbjct: 121 IIGDNVTIGHSAVIHGCTVEDEAFVGMGATLLDGVVVEKNAMVAAGALVRQNTKIPSGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLTDEEIAFISQSATNY NL+QVHAAENAKSFDEIEFEKVLRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFISQSATNYLNLSQVHAAENAKSFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI---KDPKSLQK 270
           +YDSMLGVVRETP E+I+PD+I   KDPK LQK
Sbjct: 241 DYDSMLGVVRETPPELILPDNILPDKDPKPLQK 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538692|ref|XP_002510411.1| Protein yrdA, putative [Ricinus communis] gi|223551112|gb|EEF52598.1| Protein yrdA, putative [Ricinus communis]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/270 (91%), Positives = 260/270 (96%), Gaps = 1/270 (0%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+YTVGFWIRETGQALDRLGCR QG+YYFQEQLSRHRTLMNIFDKAP VDKDAF
Sbjct: 1   MGTLGRAIYTVGFWIRETGQALDRLGCRFQGSYYFQEQLSRHRTLMNIFDKAPMVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASIIGDVQVG+G+SIWYGCVLRGDVNSISVG+GTNIQDNSLVHVAKSNLSGKV+PT
Sbjct: 61  VAPSASIIGDVQVGKGASIWYGCVLRGDVNSISVGAGTNIQDNSLVHVAKSNLSGKVIPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE+HGMVAAG+LVRQNT+IP+GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTKIPAGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAK FDEIEFEKVLRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSIKDPKSLQK 270
           EYDSMLGVVRETP E+I+PD++  P   QK
Sbjct: 241 EYDSMLGVVRETPPELILPDNVL-PDKEQK 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458237|ref|XP_002282021.1| PREDICTED: uncharacterized protein DDB_G0288155 isoform 1 [Vitis vinifera] gi|147856360|emb|CAN79636.1| hypothetical protein VITISV_014473 [Vitis vinifera] gi|302142516|emb|CBI19719.3| unnamed protein product [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/272 (90%), Positives = 257/272 (94%), Gaps = 3/272 (1%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLG+A+YTVGFWIRETGQA+DRLGCRLQGNYYF EQ+SRHRTLMN+FDKAP VDKDAF
Sbjct: 1   MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGNYYFLEQISRHRTLMNLFDKAPIVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDG +VE+H MVAAG+LVRQNTRIP GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGSIVEKHAMVAAGALVRQNTRIPCGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLTDEEIAFISQSA NYSNLAQVHAAENAK FDEIEFEKVLRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFISQSAINYSNLAQVHAAENAKPFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI---KDPKSLQ 269
           +YDSMLGVVRETP E+I+PD+I   K PK  Q
Sbjct: 241 DYDSMLGVVRETPPELILPDNILPDKAPKVSQ 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538694|ref|XP_002510412.1| Protein yrdA, putative [Ricinus communis] gi|223551113|gb|EEF52599.1| Protein yrdA, putative [Ricinus communis]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/271 (88%), Positives = 259/271 (95%), Gaps = 3/271 (1%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+Y++GFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMN+FDKAP VDKDAF
Sbjct: 1   MGTLGRAIYSIGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNVFDKAPVVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASIIGDVQVGRG+SIWYGCVLRGDVNSIS+GSGTNIQDN+LVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGASIWYGCVLRGDVNSISIGSGTNIQDNTLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAVLHGCTVEDEAFVGMG TLLDGVVVE++ MVAAG+LVRQNT+IP+GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGTTLLDGVVVEKNAMVAAGALVRQNTKIPAGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPA+FLRKLTDEEIAFI QSATNYSNLAQVHA ENAK FDEIEFEKVLRKKFARRDE
Sbjct: 181 WGGNPARFLRKLTDEEIAFIMQSATNYSNLAQVHATENAKPFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI---KDPKSL 268
           EYDSMLGVVRETP E+I+PD++   K PK++
Sbjct: 241 EYDSMLGVVRETPPELILPDNVLPDKAPKAI 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082886|ref|XP_002306878.1| predicted protein [Populus trichocarpa] gi|222856327|gb|EEE93874.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/270 (89%), Positives = 257/270 (95%), Gaps = 3/270 (1%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+Y VGFW+RETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAP VDKDAF
Sbjct: 1   MGTLGRAIYAVGFWVRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAP AS+IGDV VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPGASVIGDVLVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE+H MVAAG+LVRQNTRIP+GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPTGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLTDEE+AFI+QSATNYSNLAQVHAAENAK FDEIEFEKVLRKKFA++DE
Sbjct: 181 WGGNPAKFLRKLTDEEVAFIAQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFAKKDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI---KDPKS 267
           EYDSMLGVVRE P E+I+P ++   K+PK+
Sbjct: 241 EYDSMLGVVRELPPELILPKNVLPDKEPKA 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066191|ref|XP_002302024.1| predicted protein [Populus trichocarpa] gi|118486617|gb|ABK95146.1| unknown [Populus trichocarpa] gi|222843750|gb|EEE81297.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/262 (91%), Positives = 255/262 (97%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+YTVGFWIRETGQALDRLG RLQGNYYFQEQLSRHRTLMNIFDKAP VDKDAF
Sbjct: 1   MGTLGRAIYTVGFWIRETGQALDRLGGRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSAS+IGDVQVG+GSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASVIGDVQVGKGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAV+HGCTVEDEAFVGMGATLLDGVVVE+H MVAAG+LVRQNTRIP+GEV
Sbjct: 121 IIGDNVTVGHSAVVHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPTGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLTDEEIAFI+QSATNYSNLAQVHAAENAK FDEIEFEKVLRKKFA++DE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFIAQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFAKKDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI 262
           EYDSMLGVVRE P E+I+P+++
Sbjct: 241 EYDSMLGVVRELPPELILPNNV 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457524|ref|XP_004146498.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/262 (90%), Positives = 252/262 (96%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLG+A+YTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAP VDKDAF
Sbjct: 1   MGTLGKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAVLHGCT+EDEAFVGMGATLLDGV VE+H MVAAG+LVRQNTR+P GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTRVPCGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLT+EE+ FISQSA NYSNL+QVHAAEN KSFDEIE EKVLRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTEEEMVFISQSAINYSNLSQVHAAENVKSFDEIELEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI 262
           +YDSMLGVVRETP E+++PD+I
Sbjct: 241 DYDSMLGVVRETPPELVLPDNI 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499995|ref|XP_004160973.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/262 (90%), Positives = 250/262 (95%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLG+A+YTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAP VD DAF
Sbjct: 1   MGTLGKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDMDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVTVGHSAVLHGCT+EDEAFVGMGATLLDGV VE+H MVAAG+LVRQNTR+P GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTRVPCGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLT+EE+ FI QSA NYSNL+QVHAAEN KSFDEIE EKVLRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTEEEMVFICQSAINYSNLSQVHAAENVKSFDEIELEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI 262
           +YDSMLGVVRETP E+++PD+I
Sbjct: 241 DYDSMLGVVRETPPELVLPDNI 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458239|ref|XP_002282034.1| PREDICTED: uncharacterized protein DDB_G0288155 isoform 2 [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/280 (87%), Positives = 257/280 (91%), Gaps = 11/280 (3%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLG+A+YTVGFWIRETGQA+DRLGCRLQGNYYF EQ+SRHRTLMN+FDKAP VDKDAF
Sbjct: 1   MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGNYYFLEQISRHRTLMNLFDKAPIVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRG--------DVNSISVGSGTNIQDNSLVHVAKSN 112
           VAPSASIIGDVQVGRGSSIWYGCVLRG        DVNSISVGSGTNIQDNSLVHVAKSN
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGKMLWSKLGDVNSISVGSGTNIQDNSLVHVAKSN 120

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           LSGKVLPT IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDG +VE+H MVAAG+LVRQN
Sbjct: 121 LSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGSIVEKHAMVAAGALVRQN 180

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLR 232
           TRIP GEVWGGNPAKFLRKLTDEEIAFISQSA NYSNLAQVHAAENAK FDEIEFEKVLR
Sbjct: 181 TRIPCGEVWGGNPAKFLRKLTDEEIAFISQSAINYSNLAQVHAAENAKPFDEIEFEKVLR 240

Query: 233 KKFARRDEEYDSMLGVVRETPQEIIVPDSI---KDPKSLQ 269
           KKFARRDE+YDSMLGVVRETP E+I+PD+I   K PK  Q
Sbjct: 241 KKFARRDEDYDSMLGVVRETPPELILPDNILPDKAPKVSQ 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134252|ref|XP_002327793.1| predicted protein [Populus trichocarpa] gi|222836878|gb|EEE75271.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/270 (87%), Positives = 254/270 (94%), Gaps = 3/270 (1%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+Y+VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMN+FDKAP V+KDAF
Sbjct: 1   MGTLGRAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNVFDKAPVVEKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSASI G+V VGR SSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT
Sbjct: 61  VAPSASITGNVHVGRSSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNV+VGHSAVLHGCTVEDEAFVG GATLLDGV VE+H MVAAG+LVRQNTRIPSGEV
Sbjct: 121 IIGDNVSVGHSAVLHGCTVEDEAFVGTGATLLDGVCVEKHAMVAAGALVRQNTRIPSGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           WGGNPAKFLRKLT+EE+AFISQSA NY+NLAQVHAAENAK FDEIEFEKVL KKFARRDE
Sbjct: 181 WGGNPAKFLRKLTEEEMAFISQSALNYANLAQVHAAENAKGFDEIEFEKVLHKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSI---KDPKS 267
           EY+SMLGVVRETP E+I+P+++   K PK+
Sbjct: 241 EYESMLGVVRETPPELILPNNMMPDKMPKA 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2013104	275	GAMMA CA1 "gamma carbonic anhy	1.0	0.981	0.840	6.5e-122
TAIR|locus:2036741	278	GAMMA CA2 "gamma carbonic anhy	0.970	0.942	0.801	4.4e-116
TAIR|locus:2154840	258	GAMMA CA3 "gamma carbonic anhy	0.907	0.949	0.784	2.3e-103
DICTYBASE|DDB_G0288155	246	DDB_G0288155 "trimeric LpxA-li	0.862	0.947	0.415	2e-47
TIGR_CMR|APH_1197	170	APH_1197 "hexapeptide transfer	0.577	0.917	0.521	4.6e-41
TIGR_CMR|NSE_0045	185	NSE_0045 "hexapeptide transfer	0.629	0.918	0.517	9.6e-41
TIGR_CMR|ECH_1066	170	ECH_1066 "hexapeptide transfer	0.574	0.911	0.512	8.7e-40
TIGR_CMR|CJE_0280	182	CJE_0280 "transferase, hexapep	0.603	0.895	0.437	1.7e-36
TIGR_CMR|GSU_0020	179	GSU_0020 "hexapeptide transfer	0.622	0.938	0.467	1.7e-36
UNIPROTKB|Q88B74	181	PSPTO_0145 "Uncharacterized pr	0.622	0.928	0.449	2.4e-35

TAIR|locus:2013104 GAMMA CA1 "gamma carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
 Identities = 227/270 (84%), Positives = 249/270 (92%)

Query:     1 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
             MGTLGRA Y+VGFWIRETGQALDRLGCRLQG  YF+EQLSRHRTLMN+FDKAP VDK+AF
Sbjct:     1 MGTLGRAFYSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAF 60

Query:    61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
             VAPSAS+IGDV +GRGSSIWYGCVLRGDVN++SVGSGTNIQDNSLVHVAKSNLSGKV PT
Sbjct:    61 VAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPT 120

Query:   121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
              IGDNVT+GHSAVLHGCTVEDE F+GMGATLLDGVVVE+HGMVAAG+LVRQNTRIPSGEV
Sbjct:   121 IIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEV 180

Query:   181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
             WGGNPA+FLRKLTDEEIAFISQSATNYSNLAQ HAAENAK  + IEFEKVLRKK A +DE
Sbjct:   181 WGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDE 240

Query:   241 EYDSMLGVVRETPQEIIVPDSIKDPKSLQK 270
             EYDSMLG+VRETP E+ +P++I   K  ++
Sbjct:   241 EYDSMLGIVRETPPELNLPNNILPDKETKR 270

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0004089 "carbonate dehydratase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2036741 GAMMA CA2 "gamma carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 210/262 (80%), Positives = 244/262 (93%)

Query:     1 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
             MGTLGRA+YTVG WIR TGQALDR+G  LQG++  +E LSRHRTLMN+FDK+P VDKD F
Sbjct:     1 MGTLGRAIYTVGNWIRGTGQALDRVGSLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVF 60

Query:    61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
             VAPSAS+IGDVQ+G+GSSIWYGCVLRGDVN+ISVGSGTNIQDN+LVHVAK+N+SGKVLPT
Sbjct:    61 VAPSASVIGDVQIGKGSSIWYGCVLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKVLPT 120

Query:   121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
              IGDNVTVGHSAV+HGCTVED+AFVGMGATLLDGVVVE+H MVAAGSLV+QNTRIPSGEV
Sbjct:   121 LIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEV 180

Query:   181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
             WGGNPAKF+RKLTDEEI +ISQSA NY NLAQ+HA+EN+KSF++IE E+ LRKK+AR+DE
Sbjct:   181 WGGNPAKFMRKLTDEEIVYISQSAKNYINLAQIHASENSKSFEQIEVERALRKKYARKDE 240

Query:   241 EYDSMLGVVRETPQEIIVPDSI 262
             +YDSMLG+ RETP E+I+PD++
Sbjct:   241 DYDSMLGITRETPPELILPDNV 262

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0004089 "carbonate dehydratase activity" evidence=ISS;IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009901 "anther dehiscence" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0070207 "protein homotrimerization" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2154840 GAMMA CA3 "gamma carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 193/246 (78%), Positives = 217/246 (88%)

Query:     1 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
             MGT+G+A Y+VGFWIRETGQALDRLGCRLQG  +F+EQLSRHRTLMN+FDK P VDK AF
Sbjct:     1 MGTMGKAFYSVGFWIRETGQALDRLGCRLQGKNHFREQLSRHRTLMNVFDKTPNVDKGAF 60

Query:    61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
             VAP+AS+ GDV VGRGSSIWYGCVLRGD NSISVG+GTNIQDN+LVHVAK+NLSGKVLPT
Sbjct:    61 VAPNASLSGDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQDNALVHVAKTNLSGKVLPT 120

Query:   121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
              IGDNVT+GHSAVLHGCTVEDEA++G  AT+LDG  VE+H MVA+G+LVRQNTRIPSGEV
Sbjct:   121 VIGDNVTIGHSAVLHGCTVEDEAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIPSGEV 180

Query:   181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
             WGGNPAKFLRK+T+EE  F S SA  YSNLAQ HA ENAK+ DE EF+K+L KK AR D 
Sbjct:   181 WGGNPAKFLRKVTEEERVFFSSSAVEYSNLAQAHATENAKNLDEAEFKKLLNKKNAR-DT 239

Query:   241 EYDSML 246
             EYDS+L
Sbjct:   240 EYDSVL 245

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004089 "carbonate dehydratase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0288155 DDB_G0288155 "trimeric LpxA-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 98/236 (41%), Positives = 150/236 (63%)

Query:    11 VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGD 70
             +G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP V + +F+AP+ASIIGD
Sbjct:    10 LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGD 69

Query:    71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130
             V +G+ SSIWY  VLRGDVNSI +G  T + D ++VH + +   G   PT IGD V +G 
Sbjct:    70 VVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGPK-PTQIGDKVYIGP 128

Query:   131 SAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 190
              +++H  T+  E+F+G G+TL DG VVE++G + AGSL+     I SGE WGG+PAKF+R
Sbjct:   129 GSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIR 188

Query:   191 KLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSML 246
             ++T ++ + + +      NL++ H  + +KS  E+  +  L +K+ +     D +L
Sbjct:   189 QVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNND--LLQKYVKNRTRSDHIL 242

GO:0016740 "transferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|APH_1197 APH_1197 "hexapeptide transferase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 84/161 (52%), Positives = 116/161 (72%)

Query:    52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKS 111
             +P+VD  AF+A +A IIGDV +G+ +SIWYG VLRGDV+ I VG GTNIQDN++VH    
Sbjct:    12 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHT--D 69

Query:   112 NLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171
             ++ G    T IG  VT+GHS +LH CT+ + AFVGMG+ ++D  V+E   M+AAGSL+ +
Sbjct:    70 SMHGD---TVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR 126

Query:   172 NTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
                + SGE+W G PAKFLR +T+EEI ++ +SA NY  L++
Sbjct:   127 GKIVKSGELWAGRPAKFLRMMTEEEILYLQKSAENYIALSR 167

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|NSE_0045 NSE_0045 "hexapeptide transferase family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 90/174 (51%), Positives = 119/174 (68%)

Query:    39 LSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGT 98
             LS   TL+ +    P+     F+A +A +IG+V VG  SSIWYGC +RGDVN I++GS T
Sbjct:     4 LSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIGSYT 63

Query:    99 NIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE 158
             NIQD +++HV+     G+   T IG+ VTVGH  +LH CT+ DE FVGMG+ ++DG ++E
Sbjct:    64 NIQDCTMIHVSH----GEKGHTEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIME 119

Query:   159 RHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
                MVAAGSLV  N RI SGE+W G PAKF+R LT EEI+ I +SA  Y+ LA+
Sbjct:   120 SGSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISHIRESAIRYAALAE 173

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|ECH_1066 ECH_1066 "hexapeptide transferase family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 82/160 (51%), Positives = 113/160 (70%)

Query:    53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN 112
             P +D   FVAP+A +IG+V + + +S+WY  VLRGDV  ISVG GTNIQDN+++HV ++ 
Sbjct:    12 PNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQDNTVIHVDRNY 71

Query:   113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
               G    T IG  VTVGHS +LH C + D AFVGMG+ ++D V++E + M+A+GSLV + 
Sbjct:    72 --GD---TQIGKMVTVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASGSLVTKG 126

Query:   173 TRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
               I SGE+W G PAKF R L++EEI  I +SA+NY  L++
Sbjct:   127 KIIKSGELWAGRPAKFFRMLSEEEINHIKESASNYIQLSR 166

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|CJE_0280 CJE_0280 "transferase, hexapeptide repeat family" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 74/169 (43%), Positives = 108/169 (63%)

Query:    45 LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNS 104
             L+   + +P + ++ FVA  A IIG++++G  SSIW+ CVLR DVN I +G  TNIQD S
Sbjct:     2 LIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRADVNFIKIGKRTNIQDLS 61

Query:   105 LVHV------AKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE 158
              VHV       K  L     PT IGD+VT+GH+ V+H C +++   +GM A ++D  ++E
Sbjct:    62 TVHVWHREFDKKGKLKDAGFPTIIGDDVTIGHNCVIHACVIKNRVLIGMNAVIMDSALIE 121

Query:   159 RHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 207
                +V AGS+V +  + P   +  GNPAKF+R+L DEE++F+ QSA NY
Sbjct:   122 EDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEVSFLKQSALNY 170

GO:0008152 "metabolic process" evidence=ISS

GO:0016740 "transferase activity" evidence=ISS

TIGR_CMR|GSU_0020 GSU_0020 "hexapeptide transferase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 79/169 (46%), Positives = 110/169 (65%)

Query:    52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA-K 110
             +P +D  AF+A +A +IGDV +G  SSIWY  V RGDVN I +G+ +NIQD S++HV  K
Sbjct:     9 SPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDLSMLHVTHK 68

Query:   111 SNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
              +      P  IGD+VTVGHS  LHGCT+ + AF+GM A ++D  VV    +V A +LV 
Sbjct:    69 KHADDPGAPLVIGDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGALVGARALVT 128

Query:   171 QNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENA 219
             + T IP   +W G PAK+ R LT +EIA++ +SA NY   ++ +  E+A
Sbjct:   129 EGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKRSAGNYVRYSREYLEEDA 177

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q88B74 PSPTO_0145 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 76/169 (44%), Positives = 108/169 (63%)

Query:    50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
             D  PA+ + AF+  SA +IGDV++G  SSIW   V+RGD++ I +G+ T++QD S++H+ 
Sbjct:     8 DHTPALGERAFIDHSAMVIGDVEIGADSSIWPLTVVRGDMHRIRIGARTSVQDGSVLHIT 67

Query:   110 KSN-LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168
              +   +    P  IGD VT+GH ++LHGCT+ +   VGMG T++DG VVE   ++ AGSL
Sbjct:    68 HAGPFNPDGFPLLIGDEVTIGHKSMLHGCTIGNRILVGMGTTIMDGAVVEDEVIIGAGSL 127

Query:   169 VRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 217
             V     + SG ++ G P K  R LT++EIAF   SATNY  L   H AE
Sbjct:   128 VPPGKVLESGFLYVGRPVKQARALTEKEIAFFPYSATNYVKLKDQHLAE 176

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6B3	GCA2_ARATH	4, ., 2, ., 1, ., -	0.8015	0.9703	0.9424	no	no
Q54JC2	Y2881_DICDI	No assigned EC number	0.4152	0.8629	0.9471	yes	no
Q94AU7	GCA3_ARATH	4, ., 2, ., 1, ., -	0.7340	0.9518	0.9961	no	no
Q9FWR5	GCA1_ARATH	4, ., 2, ., 1, ., -	0.8407	1.0	0.9818	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V1385 carbonate dehydratase (EC-4.2.1.1) (272 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
PLN02296	269	PLN02296, PLN02296, carbonate dehydratase	0.0
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	5e-87
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	1e-72
PLN02472	246	PLN02472, PLN02472, uncharacterized protein	5e-51
cd04650	154	cd04650, LbH_FBP, Ferripyochelin Binding Protein (	1e-42
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	8e-39
TIGR02287	192	TIGR02287, PaaY, phenylacetic acid degradation pro	6e-32
PRK13627	196	PRK13627, PRK13627, carnitine operon protein CaiE;	5e-28
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	9e-24
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	2e-16
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	1e-15
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	2e-15
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	4e-14
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	6e-11
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	4e-10
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	8e-10
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	2e-09
cd03349	145	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT)	5e-08
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	3e-07
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	3e-07
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	5e-07
cd03357	169	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase	1e-06
cd03350	139	cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyri	1e-06
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	1e-06
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	2e-06
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	3e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	4e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	9e-06
PRK10092	183	PRK10092, PRK10092, maltose O-acetyltransferase; P	1e-05
PLN02739	355	PLN02739, PLN02739, serine acetyltransferase	2e-05
PRK09677	192	PRK09677, PRK09677, putative lipopolysaccharide bi	3e-05
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	6e-05
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	1e-04
TIGR03308	204	TIGR03308, phn_thr-fam, phosphonate metabolim prot	1e-04
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	2e-04
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	3e-04
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	3e-04
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	3e-04
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	3e-04
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	4e-04
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	6e-04
PRK10502	182	PRK10502, PRK10502, putative acyl transferase; Pro	7e-04
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	8e-04
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	0.002
COG2171	271	COG2171, DapD, Tetrahydrodipicolinate N-succinyltr	0.002
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	0.002

>gnl|CDD|215167 PLN02296, PLN02296, carbonate dehydratase

 Score =  571 bits (1474), Expect = 0.0
 Identities = 248/270 (91%), Positives = 259/270 (95%), Gaps = 1/270 (0%)

Query: 1   MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAF 60
           MGTLGRA+YTVGFWIRETGQALDRLGCRLQGNYYF+EQLSRHRTLMNIFDKAP VDKDAF
Sbjct: 1   MGTLGRAIYTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           VAPSAS+IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAK+NLSGKVLPT
Sbjct: 61  VAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPT 120

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180
            IGDNVT+GHSAVLHGCTVEDEAFVGMGATLLDGVVVE+H MVAAG+LVRQNTRIPSGEV
Sbjct: 121 IIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEV 180

Query: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240
           W GNPAKFLRKLT+EEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE
Sbjct: 181 WAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPQEIIVPDSIKDPKSLQK 270
           EYDSMLGVVRETP E+I+PD+I  P    K
Sbjct: 241 EYDSMLGVVRETPPELILPDNIL-PDKAPK 269

Length = 269

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score =  255 bits (654), Expect = 5e-87
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 6/158 (3%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS 114
           +D  AF+AP+A++IGDV +G GSS+W+G VLRGDVN I +G  TNIQD S++HV      
Sbjct: 2   IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGY-- 59

Query: 115 GKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTR 174
               PT IGDNVTVGH AVLHGCT+ D   +GMGA +LDG V+ +  +VAAGSLV     
Sbjct: 60  ----PTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKV 115

Query: 175 IPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
           IP G +  G+PAK +R+LTDEEIA + +SA +Y  LA+
Sbjct: 116 IPPGSLVAGSPAKVVRELTDEEIAELRESAEHYVELAK 153

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score =  219 bits (561), Expect = 1e-72
 Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 6/167 (3%)

Query: 50  DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
             +P +D  AFVAPSA++IGDV++G G SIW G VLRGDV  I +G+ TNIQD  ++H  
Sbjct: 9   GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHAD 68

Query: 110 KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV 169
                    P TIGD+VT+GH AV+HGCT+ D   +GMGAT+LDG V+    +V AG+LV
Sbjct: 69  PGY------PVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALV 122

Query: 170 RQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAA 216
                IP G +  G+PAK +R L DEE+A++ ++A NY  LA  + A
Sbjct: 123 TPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAENYVKLADRYLA 169

Length = 176

>gnl|CDD|215263 PLN02472, PLN02472, uncharacterized protein

 Score =  167 bits (423), Expect = 5e-51
 Identities = 76/194 (39%), Positives = 119/194 (61%), Gaps = 2/194 (1%)

Query: 43  RTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQD 102
           R ++ +    P V  DA+VAP+  + G V V  G+S+W G VLRGD+N I+VG  +N+Q+
Sbjct: 50  RQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQE 109

Query: 103 NSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGM 162
             ++H A ++ +G    T I   VT+G  ++L  CT+E E  +G  + L++G +VE H +
Sbjct: 110 RCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSI 169

Query: 163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAK-S 221
           + AGS++    RIP+GE+W GNPA+F+R LT+EE   I + A   ++L+Q H +E    S
Sbjct: 170 LEAGSVLPPGRRIPTGELWAGNPARFVRTLTNEETLEIPKLAVAINDLSQSHFSEFLPYS 229

Query: 222 FDEIEFEKVLRKKF 235
              +E EK L+K  
Sbjct: 230 TAYLEVEK-LKKSL 242

Length = 246

>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

 Score =  142 bits (360), Expect = 1e-42
 Identities = 66/160 (41%), Positives = 99/160 (61%), Gaps = 6/160 (3%)

Query: 53  PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN 112
           P +   A+V P++ +IGDV +G  +S+W+  V+RGD +SI +G  +N+Q+N  +H     
Sbjct: 1   PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHG- 59

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
                 PT IGD VT+GH+AV+HG  V +   VGMGA LL+G  +  H ++ AG++V   
Sbjct: 60  -----YPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
             IP   +  G PAK +RKLT+EEI +I ++A  Y  LA+
Sbjct: 115 KEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEYVELAE 154

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. Length = 154

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score =  132 bits (335), Expect = 8e-39
 Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 6/160 (3%)

Query: 53  PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN 112
           P VD  +FV P+A +IGDV +G+   I     LRGD   I +  G N+QDN ++H     
Sbjct: 1   PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIH----- 55

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
                  T + +N  +GH A+LHGCT+   A VGM A ++DG V+    +V A + V+  
Sbjct: 56  -GFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
           T IP   +  G+PAK +R+L+DEE+A+ ++    Y  LA 
Sbjct: 115 TVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTKEYQQLAA 154

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY

 Score =  116 bits (291), Expect = 6e-32
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 6/160 (3%)

Query: 53  PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN 112
           P V  +A+V P+A +IGDV +G+   +     LRGD   I +  G NIQDN ++H     
Sbjct: 9   PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMH----G 64

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
             G+   T + +N  VGH A+LHGC V   A VGM A ++DG V+  + +VAA + V+  
Sbjct: 65  FPGQ--DTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
             +P+  +  G+PAK +R+L+++E+A+  Q    Y  LA 
Sbjct: 123 AEMPAQYLVVGSPAKVIRELSEQELAWKKQGTHEYQVLAT 162

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator [Energy metabolism, Other]. Length = 192

>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional

 Score =  106 bits (265), Expect = 5e-28
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 6/160 (3%)

Query: 53  PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN 112
           P V   AFV PSA +IGDV VG G  I     LRGD   + V +G N+QD  ++H     
Sbjct: 11  PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD- 69

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
                  T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+  
Sbjct: 70  -----TDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAG 124

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
            +    ++  G PA+ +R ++D+E+ +   +   Y +L  
Sbjct: 125 FQGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVG 164

Length = 196

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 93.8 bits (234), Expect = 9e-24
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 23/174 (13%)

Query: 51  KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVA 109
             P +D  A+V P+A +IGDV +G    +  G  +R D    I +G+  NIQD  ++H A
Sbjct: 1   DEPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIH-A 59

Query: 110 KSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLL-----DGVVVERHGMV 163
               S       IG NV++ H A++HG   + D  F+G  + +      D  V+  + +V
Sbjct: 60  LEGYS-----VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVV 114

Query: 164 -----AAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
                  G  V     I S        A  L  +TD    F  +  T  + LA+
Sbjct: 115 DGVEIPPGRYVPAGAVITSQTQ-----ADALPDVTDSAREFNEKVITVNNELAE 163

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 74.9 bits (185), Expect = 2e-16
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 24/138 (17%)

Query: 52  APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLV-HVAK 110
           A  +   A V+PSASI      G G+ I  G V+  DV    +G    I   ++V H   
Sbjct: 78  ATLIHPSAIVSPSASI------GEGTVIMAGAVINPDV---RIGDNVIINTGAIVEH--- 125

Query: 111 SNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV 169
                      IGD V +     L G   + +  F+G GAT++ GV +    +V AG++V
Sbjct: 126 --------DCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAVVGAGAVV 177

Query: 170 RQNTRIPSGEVWGGNPAK 187
            ++  IP G V  G PAK
Sbjct: 178 TKD--IPDGGVVVGVPAK 193

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 40/141 (28%)

Query: 68  IGD-VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV 126
           IGD   +G    I              +G    IQ N  V + +          TI D+V
Sbjct: 1   IGDNCIIGTNVFIENDVK---------IGDNVKIQSN--VSIYE--------GVTIEDDV 41

Query: 127 TVGHSAV----------------LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
            +G + V                L G TV+  A +G  AT+L GV +  + +V AG++V 
Sbjct: 42  FIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVV- 100

Query: 171 QNTR-IPSGEVWGGNPAKFLR 190
             T+ +P   +  GNPA+ + 
Sbjct: 101 --TKDVPPYALVVGNPARIIG 119

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 60  FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISVGSGTNIQDNSLVHVAKSNLSGKVL 118
            + PSA +     +G G  I  G V    +N    +G    I  N+   +          
Sbjct: 86  LIHPSAVVSPSAVIGEGCVIMAGAV----INPDARIGDNVII--NTGAVIGHD------- 132

Query: 119 PTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS 177
              IGD V +    VL G  T+ + AF+G GAT++ GV +    ++ AG++V ++  +P 
Sbjct: 133 -CVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPD 189

Query: 178 GEVWGGNP 185
           G V  GNP
Sbjct: 190 GSVVVGNP 197

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 66.3 bits (163), Expect = 4e-14
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 30/119 (25%)

Query: 91  SISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGC------------- 137
           +IS+G    I    ++     +  G +   TIGDNV +G +  ++               
Sbjct: 1   NISIGDNVYIGPGCVI-----SAGGGI---TIGDNVLIGPNVTIYDHNHDIDDPERPIEQ 52

Query: 138 -------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189
                   + D+ ++G    +L GV +    +V AGS+V ++  +P   +  GNPAK +
Sbjct: 53  GVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAGNPAKVI 109

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130
           V +G G  I    V+RG V    +G   NI   +++  A         PT IGDNV +G 
Sbjct: 1   VFIGEGVKIHPKAVIRGPV---VIGDNVNIGPGAVIGAATGPNEKN--PTIIGDNVEIGA 55

Query: 131 SAVLHG-CTVEDEAFVGMGATLL 152
           +AV+HG   + D A +G GA + 
Sbjct: 56  NAVIHGGVKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 11/131 (8%)

Query: 66  SIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125
               ++ +G    I    V+      I++G    +  N  V +  ++  G  +   IG  
Sbjct: 63  LGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPN--VTIYTNSHPGDFVTANIGAL 119

Query: 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP 185
           V  G        T+ ++ ++G GA +L GV +    ++ AGS+V ++  +P   +  GNP
Sbjct: 120 VGAG------PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--VPPYGIVAGNP 171

Query: 186 AKFLRKLTDEE 196
           A+ +RK     
Sbjct: 172 ARVIRKRDVVA 182

Length = 190

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 24/146 (16%)

Query: 58  DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKV 117
           +A + P A I   V +G  + I  G V+  ++ +  +G GT I  N++       L G+ 
Sbjct: 86  NARIEPGAIIRDQVIIGDNAVIMMGAVI--NIGAE-IGEGTMIDMNAV-------LGGR- 134

Query: 118 LPTTIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168
              T+G NV +G  AVL G           +ED   +G  A +L+GV V +  +VAAG++
Sbjct: 135 --ATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAI 192

Query: 169 VRQNTRIPSGEVWGGNPAKFLRKLTD 194
           V ++  +P   V  G PAK ++++ +
Sbjct: 193 VTED--VPPNTVVAGVPAKVIKQVDE 216

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 82  GCVLRGDVNSISVGSGTNIQDNSLVH--VAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTV 139
             ++RGD+ ++S+G    + +  ++     K +      P  IGD V +G + V++   +
Sbjct: 33  DVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQI 92

Query: 140 ------EDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKF 188
                      +G    + D V +        G++V  +T IP   V  G PA+F
Sbjct: 93  GSYVHIGKNCVIGRRCIIKDCVKI------LDGTVVPPDTVIPPYSVVSGRPARF 141

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 138 TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEE 196
            + ++ ++G GAT+L GV +    ++AAG++V ++  +P   + GGNPAK +R    +E 
Sbjct: 75  IIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIRYRFDEET 132

Query: 197 IAFISQSA 204
           I  +    
Sbjct: 133 IERLLALK 140

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Length = 145

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 121 TIGDNVTVGHSAVLHG------------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168
           TIG    V    +L G             T+  +AF+G  +TL     +     +  GS 
Sbjct: 133 TIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSA 192

Query: 169 VRQNTRIPSGEVWGGNPAK 187
           ++    IP GE W G+PA+
Sbjct: 193 LQGGQSIPDGERWHGSPAQ 211

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 22/89 (24%)

Query: 119 PTTIGDNVTVGHSAVLHGCT------------------VEDEAFVGMGATLLDGVVVERH 160
           P TIG +  +   A L  CT                  + D A+V   A +  GV +   
Sbjct: 23  PVTIGSDACISQGAYL--CTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80

Query: 161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189
            +V A S+V ++  +P+  V+ GNPA  +
Sbjct: 81  AVVGARSVVVRD--LPAWTVYAGNPAVPV 107

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 48.9 bits (118), Expect = 5e-07
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125
           IIGD V++G  +      + RG +    +G GT I DN LV +A +          IG+N
Sbjct: 94  IIGDDVEIGANT-----TIDRGALGDTVIGDGTKI-DN-LVQIAHN--------VRIGEN 138

Query: 126 -VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGN 184
            +      +    T+ D   +G    +   + +    ++ AGS V     +P GE   G 
Sbjct: 139 CLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGT 196

Query: 185 PAK 187
           PA+
Sbjct: 197 PAQ 199

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 46/183 (25%), Positives = 68/183 (37%), Gaps = 66/183 (36%)

Query: 41  RHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIW------YGCVLRGDVNSISV 94
           R R L++ +++ P  D +        + G   VG    I       YG       N I +
Sbjct: 15  RARRLLHEYNQTPPSDAEERRELLKELFG--SVGENVYIEPPFHCDYGY------N-IHI 65

Query: 95  GSGT--N----IQDNSLVHVAKSNLSGKVLPTTIGDNV---------TVGHS-------- 131
           G     N    I D + V              TIGDNV         T GH         
Sbjct: 66  GDNFYANFNCTILDVAPV--------------TIGDNVLIGPNVQIYTAGHPLDPEERNR 111

Query: 132 ------AVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTR-IPSGEVWGGN 184
                  +    T+ D  ++G G  +L GV +  + ++ AGS+V   T+ IP+  V  GN
Sbjct: 112 GLEYAKPI----TIGDNVWIGGGVIILPGVTIGDNSVIGAGSVV---TKDIPANVVAAGN 164

Query: 185 PAK 187
           PA+
Sbjct: 165 PAR 167

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 169

>gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 22/124 (17%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120
           V P A I     +G G+ +     +  ++ +  V  GT +   + V              
Sbjct: 4   VPPGAIIRDGAFIGPGAVLMMPSYV--NIGAY-VDEGTMVDSWATVGSC----------A 50

Query: 121 TIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171
            IG NV +   AV+ G           +ED+ F+G    +++GV+V +  ++AAG ++ Q
Sbjct: 51  QIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110

Query: 172 NTRI 175
           +T I
Sbjct: 111 STPI 114

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. Length = 139

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 60  FVAPSASIIG-DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVL 118
            + P  + I   V +GR ++I+ G  + GD     +G G  I+   ++   +        
Sbjct: 257 LIDPETTYIDRGVVIGRDTTIYPGVCISGDT---RIGEGCTIEQGVVIKGCR-------- 305

Query: 119 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG 178
              IGD+VTV   +VL    V D+  +G  A L  G  +  H  V  G+ V +  +I  G
Sbjct: 306 ---IGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH--VKIGNFV-ETKKIVMG 359

Query: 179 EVWGGNPAKFLRKLTDEEI 197
           E   G+ A  L  L D  I
Sbjct: 360 E---GSKASHLTYLGDATI 375

Length = 459

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 14/131 (10%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISVGSGTNIQDNSL 105
           +    ++ P A I+G  ++G+ + I  G V+         +G+ + + +G    I++   
Sbjct: 32  IGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVT 91

Query: 106 VHVAKSNLSGKVLPTTIG-DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVA 164
           +H  +    G V  T IG DN+ + +S V H C + +   +  GA L   V V    +++
Sbjct: 92  IH--RGTKGGGV--TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIIS 147

Query: 165 AGSLVRQNTRI 175
              LV Q  RI
Sbjct: 148 GNCLVHQFCRI 158

Length = 255

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 42/180 (23%)

Query: 6   RAVYTVGFWI-RETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPS 64
                 G+W+   T + L              E L R      +      V        S
Sbjct: 210 YGYVFEGYWLDIGTPEDLLEA----------NELLLRGDGKSPLGPIEEPVVII----RS 255

Query: 65  ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD 124
           A IIG V +G G+ I  G ++        +G G                       TIG+
Sbjct: 256 AYIIGPVVIGPGAKIGPGALIGPYT---VIGEGV----------------------TIGN 290

Query: 125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGN 184
            V + +S ++    +   +++G  + + +   +    ++    ++  N+ I  G V G  
Sbjct: 291 GVEIKNSIIMDNVVIGHGSYIG-DSIIGENCKIGASLIIGD-VVIGINSEILPGVVVGPG 348

Length = 358

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 21/105 (20%)

Query: 60  FVAPSASII-GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVL 118
            + P  + I GDV++G    I  G +L G      +G    I  N ++            
Sbjct: 4   LIDPETTYIDGDVEIGVDVVIDPGVILEGKT---VIGEDCVIGPNCVI-----------K 49

Query: 119 PTTIGDNVTVGHSAVLHGCTVEDEAFVG------MGATLLDGVVV 157
            +TIGD V +  S+V+ G  + + A VG       G  L +GV +
Sbjct: 50  DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHI 94

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 9/137 (6%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVG---SGTNIQDNSL----VH 107
           +     +     I+G   +G G+ I+ G V+ G    +      +   I DN+     V 
Sbjct: 31  IGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGEKTRLIIGDNNTIREFVT 90

Query: 108 VAKSNLSGKVLPTTIGDNVTV-GHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAG 166
           + +   SG  + T IG+N  +  +S + H C V +   +   ATL   V V  + ++   
Sbjct: 91  INRGTASGGGV-TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL 149

Query: 167 SLVRQNTRIPSGEVWGG 183
             V Q  RI    + GG
Sbjct: 150 VAVHQFVRIGRYAMIGG 166

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 40/126 (31%)

Query: 81  YGCVLRGDVNSISVGSGTNIQDNSL----VHV--------AKSNLSGKVL--PTTIGDNV 126
           + CV+  DV  I +G      DN +    VH+          +  SG  L  P TIG+NV
Sbjct: 84  FDCVML-DVCPIRIG------DNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNV 136

Query: 127 TVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA 186
            +G  AV           +  G T+ D VVV      A+G++V ++  +P   V GGNPA
Sbjct: 137 WIGGRAV-----------INPGVTIGDNVVV------ASGAVVTKD--VPDNVVVGGNPA 177

Query: 187 KFLRKL 192
           + ++KL
Sbjct: 178 RIIKKL 183

Length = 183

>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 11/84 (13%)

Query: 122 IGDNVTVGHSAVLHGCTVE---------DEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           IGD V++ H   L G   E         D A +G   T+L  + +    MVAAGSLV ++
Sbjct: 234 IGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD 293

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEE 196
             +PS  +  GNPAK +  + +++
Sbjct: 294 --VPSHSMVAGNPAKLIGFVDEQD 315

Length = 355

>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 29/148 (19%)

Query: 58  DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN----- 112
           DAF         +VQV     I   C+      SI++G  T I   S V +   N     
Sbjct: 59  DAFGRGKLFFGDNVQVNDYVHI--ACI-----ESITIGRDTLIA--SKVFITDHNHGSFK 109

Query: 113 -----LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGS 167
                 S  + P    D  T+  SAV+ G       ++G   T+L GV +    +V A S
Sbjct: 110 HSDDFSSPNLPP----DMRTLESSAVVIG----QRVWIGENVTILPGVSIGNGCIVGANS 161

Query: 168 LVRQNTRIPSGEVWGGNPAKFLRKLTDE 195
           +V ++  IP   V  GNPAK ++K   E
Sbjct: 162 VVTKS--IPENTVIAGNPAKIIKKYNHE 187

Length = 192

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 43.2 bits (103), Expect = 6e-05
 Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 52/184 (28%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLR-----------------GDVNSI---------SV 94
           +     I G   +G+ + I+    +                  GD N+I         + 
Sbjct: 38  IGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTA 97

Query: 95  GSG--TNIQDNSL----VHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGM 147
             G  T I +N+L    VHVA            IG+NV + ++A L G   + D A +G 
Sbjct: 98  QGGGVTRIGNNNLLMAYVHVAHD--------CVIGNNVILANNATLAGHVEIGDYAIIGG 149

Query: 148 GATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL---------RKLTDEEIA 198
            + +     + RH MV  GS V Q+   P      GN A+           R  + EEI 
Sbjct: 150 LSAVHQFCRIGRHAMVGGGSGVVQDV-PPYVIA-AGNRARLRGLNLVGLKRRGFSREEIR 207

Query: 199 FISQ 202
            + +
Sbjct: 208 ALKR 211

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 121 TIGDNVTVGHSAVLHGCTVEDEAF------VGMGATL------LDGVVVERHGMVAAGSL 168
           TIGD+ T+   +V+     ED         +G GATL      L GVV+    ++   SL
Sbjct: 618 TIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSL 677

Query: 169 VRQNTRIPSGEVWGGNPA 186
           V +   +P+   W GNPA
Sbjct: 678 VMKGEEVPAHTRWRGNPA 695

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase hexapeptide repeat family

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 13/73 (17%)

Query: 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP 185
           VT+GH           + ++G GA +L GV +    ++AAG++V ++  +    +  G P
Sbjct: 109 VTIGH-----------DVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVP 155

Query: 186 AKFLRKLTDEEIA 198
           AK +R+    EIA
Sbjct: 156 AKLIRRRFPPEIA 168

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. Length = 204

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 55/172 (31%)

Query: 57  KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK 116
            D  + P   + G   +G    I   CV++       +G G  I+ +S++  A       
Sbjct: 20  VDVVIDPGVILEGKTVIGEDCVIGPNCVIKDST----IGDGVVIKASSVIEGAVIGNGAT 75

Query: 117 VLP------------------------TTIGDNVTVGHSAVL------------------ 134
           V P                        +TIG+     H + L                  
Sbjct: 76  VGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITC 135

Query: 135 -------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE 179
                  H   + D  F+G  + L+  V +     +AAGS + ++  +P G 
Sbjct: 136 NYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKD--VPPGA 185

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 52/184 (28%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLR-----------------GDVNSI---------SV 94
           +     I G   +G+ + I+    +                  GD N+I         +V
Sbjct: 41  IGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTV 100

Query: 95  GSG--TNIQDNSL----VHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGM 147
             G  T I DN+L    VHVA            +G++V + ++A L G   V D A +G 
Sbjct: 101 QGGGVTRIGDNNLLMAYVHVAHD--------CVVGNHVILANNATLAGHVEVGDYAIIGG 152

Query: 148 GATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL---------RKLTDEEIA 198
              +   V +  H MV   S V Q+   P      GNPA+           R  + EEI 
Sbjct: 153 LTAVHQFVRIGAHAMVGGMSGVSQDV-PPYVLAE-GNPARLRGLNLVGLKRRGFSREEIH 210

Query: 199 FISQ 202
            + +
Sbjct: 211 ALRR 214

Length = 262

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 120 TTIGDNVTVGHSAVL--------HGC-TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
             IGDN T+     L            T+ D   +G GA +L  + +  +  + A ++V 
Sbjct: 29  AVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88

Query: 171 QNTRIPSGEVWGGNP 185
           ++  +P+     G P
Sbjct: 89  KD--VPANSTVVGVP 101

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 43/166 (25%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR-----------------GDVNSI----- 92
           +     +     + G   +GR + I+    +                  GD N+I     
Sbjct: 36  IGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVT 95

Query: 93  ----SVGSG--TNIQDNSL----VHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVED 141
               +V  G  T I DN+L     HVA            IG+N  + ++A L G   V D
Sbjct: 96  IHRGTVQGGGVTRIGDNNLIMAYAHVAHD--------CVIGNNCILANNATLAGHVEVGD 147

Query: 142 EAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK 187
            A +G  + +   V +  H M+   S V Q+   P      GN A+
Sbjct: 148 YAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV-PPYVIAS-GNHAR 191

Length = 260

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 15/85 (17%)

Query: 73  VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132
           +GRG+SI  G  ++   NS+ +G    I  N  V +  S          I D+VT+    
Sbjct: 2   IGRGTSIGEGTTIK---NSV-IGRNCKIGKN--VVIDNS---------YIWDDVTIEDGC 46

Query: 133 VLHGCTVEDEAFVGMGATLLDGVVV 157
            +H   V D A +G G T+  G ++
Sbjct: 47  TIHHSIVADGAVIGKGCTIPPGSLI 71

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 45  LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNS 104
           L  +FD        A + PSA I    ++G G SI    V         +G+G  I D  
Sbjct: 87  LAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAV---------IGAGVVIGDGV 137

Query: 105 LVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV 157
           ++       +G V    IGD V +G    LH   T+     +G    +  G V+
Sbjct: 138 VIG------AGAV----IGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181

Length = 343

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 67/173 (38%)

Query: 60  FVAPSASIIG-DVQVGRGSSIWYGCVLRGD---------------VNSISVGSGTNIQDN 103
            + P ++ I  DV++G  + I  G V++G+               V+S  +G G  I  N
Sbjct: 254 IIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDST-IGDGVTIT-N 311

Query: 104 SLVHVAKSNLSGKVLP-------TTIGDNVTVG------------HSAVLH--------- 135
           S++  +K   +  V P       + IG+ V +G             + V H         
Sbjct: 312 SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEV 371

Query: 136 ------GC---------------TVEDEAFVGMGATLLDGVVVERHGMVAAGS 167
                 GC                + D AF+G  + L+  V V  +  +AAGS
Sbjct: 372 GENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGS 424

Length = 458

>gnl|CDD|236703 PRK10502, PRK10502, putative acyl transferase; Provisional

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 22/90 (24%)

Query: 119 PTTIGDNVTVGHSAVLHGCT------------------VEDEAFVGMGATLLDGVVVERH 160
             TIG +  +   + L  CT                  + +  ++     +  GV +   
Sbjct: 91  EITIGAHCVISQKSYL--CTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSG 148

Query: 161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 190
            +V A S V ++  +P+  +  GNPA  +R
Sbjct: 149 AVVGARSSVFKS--LPANTICRGNPAVPIR 176

Length = 182

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 18/87 (20%)

Query: 94  VGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLD 153
           +G GT+I + + +     N       + IG N  +G + V+        +++    T+ D
Sbjct: 2   IGRGTSIGEGTTI----KN-------SVIGRNCKIGKNVVIDN------SYIWDDVTIED 44

Query: 154 GVVVERHGMVAAGSLVRQNTRIPSGEV 180
           G  +  H +VA G+++ +   IP G +
Sbjct: 45  GCTIH-HSIVADGAVIGKGCTIPPGSL 70

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 31/128 (24%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125
           II D V++G  +      + RG  +   +G GT I DN LV               I  N
Sbjct: 197 IIEDDVEIGANT-----TIDRGAFDDTIIGEGTKI-DN-LVQ--------------IAHN 235

Query: 126 VTVGHSAVLHGCT-VEDEAFVGMGATLLDGVVVERH------GMVAAGSLVRQNTRIPSG 178
             +G + ++     +     +G    +   V V  H        + A S V ++  IP  
Sbjct: 236 CRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKS--IPPP 293

Query: 179 EVWGGNPA 186
            V+GG PA
Sbjct: 294 GVYGGIPA 301

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 21/143 (14%)

Query: 47  NIFDKAPAVDK-----DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ 101
             +DK  +VDK     D FV     I+    V  G+ I  G V+  + + +++G+GT   
Sbjct: 86  GYYDKVDSVDKAPRMLDYFVPEGVRIVPGAIVRLGAYIAKGTVVMPE-SFVNIGAGTG-- 142

Query: 102 DNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLL 152
           + ++V    S +        +G N  +G  A + G           + D   +G  + ++
Sbjct: 143 EGTMVDGRAS-VGSCA---QVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVV 198

Query: 153 DGVVVERHGMVAAGSLVRQNTRI 175
           +GV+V    +VAAG  + Q+T+I
Sbjct: 199 EGVIVGDGCVVAAGVFITQDTKI 221

Length = 271

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 27/133 (20%)

Query: 45  LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNS 104
               F+ A  +   A + P+A+I  +V +G    I               G+G  I +N 
Sbjct: 92  FYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVI---------------GAGVVIGENV 136

Query: 105 LVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV 163
           ++       +G V    IG+NV +G   V+H   T+     +G    +  G V+   G  
Sbjct: 137 VIG------AGAV----IGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFG 186

Query: 164 AAGSLVRQNTRIP 176
            AG+      +IP
Sbjct: 187 YAGT-AIGWVKIP 198

Length = 338

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PLN02296	269	carbonate dehydratase	100.0
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	100.0
PRK13627	196	carnitine operon protein CaiE; Provisional	99.97
PLN02472	246	uncharacterized protein	99.97
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.97
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.95
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.95
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.94
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.94
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.94
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.93
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.92
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.92
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.92
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.91
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.9
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.9
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.89
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.87
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.87
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.86
PRK10502	182	putative acyl transferase; Provisional	99.86
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.86
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.86
PRK10092	183	maltose O-acetyltransferase; Provisional	99.86
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.86
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.84
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.84
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.83
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.82
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.81
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.81
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.8
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.8
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.8
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.79
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.79
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.79
PRK11132	273	cysE serine acetyltransferase; Provisional	99.78
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.78
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.78
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.78
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.78
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.78
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.77
PLN02739	355	serine acetyltransferase	99.76
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.76
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.75
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.75
PLN02694	294	serine O-acetyltransferase	99.75
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.75
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.74
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.73
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.73
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.72
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.71
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.7
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.7
PLN02296	269	carbonate dehydratase	99.7
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.7
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.7
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.69
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.69
PLN02357	360	serine acetyltransferase	99.68
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.68
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.67
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.66
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	99.66
PRK10191	146	putative acyl transferase; Provisional	99.64
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.64
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.64
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.64
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.62
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.6
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.6
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.6
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.58
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.57
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.56
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.56
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.56
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.56
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.54
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.52
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.52
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.52
PRK13627	196	carnitine operon protein CaiE; Provisional	99.51
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.51
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.5
PLN02472	246	uncharacterized protein	99.5
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.48
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.48
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.47
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.46
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.46
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.46
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.44
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.44
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.42
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.42
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.39
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.37
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.37
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.37
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.36
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.33
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.3
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.29
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.29
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.29
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.28
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.28
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.26
PRK10502	182	putative acyl transferase; Provisional	99.25
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.24
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.24
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.23
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.23
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.21
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.21
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.21
PRK11132	273	cysE serine acetyltransferase; Provisional	99.19
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.18
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.18
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.17
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.17
PRK10191	146	putative acyl transferase; Provisional	99.16
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.15
PRK10092	183	maltose O-acetyltransferase; Provisional	99.15
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.15
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.15
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.14
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.14
PLN02739	355	serine acetyltransferase	99.14
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.13
PLN02694	294	serine O-acetyltransferase	99.12
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.11
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.08
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.08
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.07
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.06
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.05
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.04
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.03
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.03
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.03
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.0
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.97
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.97
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.96
PLN02357	360	serine acetyltransferase	98.92
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.91
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.84
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.77
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.77
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.77
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.74
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.68
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.65
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.65
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.63
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.61
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.61
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.57
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.57
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.55
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.54
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.52
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.5
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.47
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.46
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.22
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.16
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	97.94
COG4801	277	Predicted acyltransferase [General function predic	97.92
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	97.9
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.7
COG4801	277	Predicted acyltransferase [General function predic	97.42
PF13720	83	Acetyltransf_11: Udp N-acetylglucosamine O-acyltra	96.75
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	90.79
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	86.02
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	80.44

>PLN02296 carbonate dehydratase

Probab=100.00  E-value=4.8e-46  Score=324.30  Aligned_cols=263  Identities=94%  Similarity=1.404  Sum_probs=251.7

Q ss_pred             CchhhhHHHHHhHHHHHHHHHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEc
Q 024224            1 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIW   80 (270)
Q Consensus         1 m~~~~~~i~~~g~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~   80 (270)
                      |.++.|+++.+|+|+|+.+++|+++++++.+.+.+.+.+++++.++.+.+..+.|+++++|+|++.+.+++.||++|.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~   80 (269)
T PLN02296          1 MGTLGRAIYTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIW   80 (269)
T ss_pred             CchHHHHHHHHHHHHHhhcchHhhhceeeecchHHHHHHHHHHHHHhhcCCCCccCCCCEECCCcEEEcceEECCCCEEC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCC
Q 024224           81 YGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERH  160 (270)
Q Consensus        81 ~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~  160 (270)
                      ++|+|.++.+++.||++|.|+++|+|........+..++++||++|+|++++++++|+||++|+||.+|+|.++++|+++
T Consensus        81 ~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~  160 (269)
T PLN02296         81 YGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKH  160 (269)
T ss_pred             CCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCC
Confidence            99999998888999999999999999865443334456899999999999999999999999999999999999999999


Q ss_pred             cEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChH
Q 024224          161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE  240 (270)
Q Consensus       161 ~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (270)
                      |+|++||+|.+++.||+++++.|+||++++++++.+...+....+.|.++++.|..++.+.+++++.++.+++++..+++
T Consensus       161 a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
T PLN02296        161 AMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE  240 (269)
T ss_pred             CEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccccccCCCcccCCCCCC
Q 024224          241 EYDSMLGVVRETPQEIIVPDSIK  263 (270)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~  263 (270)
                      +|++..+..++.|||..+|++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~  263 (269)
T PLN02296        241 EYDSMLGVVRETPPELILPDNIL  263 (269)
T ss_pred             ccccccCcccCCCCcccCCCccc
Confidence            99999999999999999999764

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-34  Score=232.36  Aligned_cols=167  Identities=49%  Similarity=0.840  Sum_probs=157.2

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.+..|.|++.++|+|+|.|.|+++||+++.|+++++|+||.+++.||++|+|++||+|+....      .+++||++
T Consensus         5 ~~~~~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~------~p~~IG~~   78 (176)
T COG0663           5 YSYEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG------YPVTIGDD   78 (176)
T ss_pred             ccccCCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC------CCeEECCC
Confidence            344567889999999999999999999999999999999999999999999999999999997443      59999999


Q ss_pred             cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT  205 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~  205 (270)
                      |+||+++++|+|+||++|+||.||+|++|+.||++|+||+||+|+++..+|+++++.|.|+|+++.+++++.++++...+
T Consensus        79 vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~  158 (176)
T COG0663          79 VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAE  158 (176)
T ss_pred             cEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhHhhhhhHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 024224          206 NYSNLAQVHAAEN  218 (270)
Q Consensus       206 ~~~~l~~~~~~~~  218 (270)
                      .|.++.+.|....
T Consensus       159 ~Yv~~~~~~~~~~  171 (176)
T COG0663         159 NYVKLADRYLAGL  171 (176)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998776543

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.97  E-value=6.3e-30  Score=213.99  Aligned_cols=165  Identities=35%  Similarity=0.552  Sum_probs=154.5

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.+..+.++++++|+|++.|.+++.||++|.|+++++|+++.+.++||++|.|+++|+|+...      ..++.|+++
T Consensus         4 ~~~~~~~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~------~~~siIg~~   77 (196)
T PRK13627          4 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYC------DTDTIVGEN   77 (196)
T ss_pred             cccCCCCCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCC------CCCCEECCC
Confidence            45667788899999999999999999999999999999999988889999999999999997543      247999999


Q ss_pred             cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT  205 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~  205 (270)
                      +.|++++.+++++||++|+||.+++|.++++||++++|++||+|.+++.+|++++|+|+||++++.+++++..+++...+
T Consensus        78 ~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~  157 (196)
T PRK13627         78 GHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKRLNTK  157 (196)
T ss_pred             CEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 024224          206 NYSNLAQVHAA  216 (270)
Q Consensus       206 ~~~~l~~~~~~  216 (270)
                      .|.++.+.|+.
T Consensus       158 ~y~~~~~~~~~  168 (196)
T PRK13627        158 EYQDLVGRCHA  168 (196)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>PLN02472 uncharacterized protein

Probab=99.97  E-value=1.7e-29  Score=217.73  Aligned_cols=188  Identities=37%  Similarity=0.633  Sum_probs=170.4

Q ss_pred             cchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCC
Q 024224           32 NYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKS  111 (270)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~  111 (270)
                      ...+.....+.+.+..+.+..|.++.+++|.|++.+.+++.||+++.|+++++|+++.+.++||++|.|+++|+|+....
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~  118 (246)
T PLN02472         39 PDRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWN  118 (246)
T ss_pred             ccccccCcCCcceEEecCCcCCccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCc
Confidence            44445566666777888889999999999999999999999999999999999999989999999999999999986543


Q ss_pred             CCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          112 NLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       112 ~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      ...+..++++||++|+|++++.+++|+||++|+||.+++|.+++.||++++|+++++|.++..+|+++++.|+||++++.
T Consensus       119 ~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~  198 (246)
T PLN02472        119 SPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRT  198 (246)
T ss_pred             cccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEecc
Confidence            22233458999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024224          192 LTDEEIAFISQSATNYSNLAQVHAAENA  219 (270)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~  219 (270)
                      +++.+.+.+....+.|.++.+.|..++.
T Consensus       199 ~~~~~~~~l~~~a~~y~~l~k~~~~~~~  226 (246)
T PLN02472        199 LTNEETLEIPKLAVAINDLSQSHFSEFL  226 (246)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999987654

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.97  E-value=6.6e-29  Score=207.17  Aligned_cols=165  Identities=36%  Similarity=0.592  Sum_probs=154.5

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.+..|.|+++++|+|.+.+.+++.||++|.|+++|+|.++.+++.||++|.|+++|+|+...      .+++.||++
T Consensus         2 ~~~~~~~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~------~~~siIg~~   75 (192)
T TIGR02287         2 YQIDGLTPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP------GQDTVVEEN   75 (192)
T ss_pred             cCcCCcCCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC------CCCCeECCC
Confidence            34567889999999999999999999999999999999999988899999999999999996432      358999999


Q ss_pred             cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT  205 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~  205 (270)
                      +.|++++.|++|+||++|+||.++++.++++||++++|+++++|.+++.+|++++++|+|||+++.+++++..|+.+...
T Consensus        76 ~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~~~~~~~~~~~  155 (192)
T TIGR02287        76 GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQELAWKKQGTH  155 (192)
T ss_pred             CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 024224          206 NYSNLAQVHAA  216 (270)
Q Consensus       206 ~~~~l~~~~~~  216 (270)
                      .|.++.+.|++
T Consensus       156 ~y~~~~~~~~~  166 (192)
T TIGR02287       156 EYQVLATRCKQ  166 (192)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.95  E-value=1.5e-26  Score=187.29  Aligned_cols=154  Identities=40%  Similarity=0.694  Sum_probs=142.7

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      |.++++++|+|.+.+.+++.||++|.|+++|+|.++.+.+.||++|.|+++|+|+..      ..++++||++|+|++++
T Consensus         1 ~~i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~------~~~~~~Ig~~~~Ig~~~   74 (155)
T cd04745           1 PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGF------PGQDTVLEENGHIGHGA   74 (155)
T ss_pred             CccCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeec------CCCCeEEcCCCEECCCc
Confidence            357889999999999999999999999999999987778999999999999999642      23579999999999999


Q ss_pred             EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224          133 VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ  212 (270)
Q Consensus       133 ~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~  212 (270)
                      .+.++.||++|+||.++.|.++++||++++|+++++|.+++.||+++++.|+|++.++.+++++++|.++...+|..|++
T Consensus        75 ~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
T cd04745          75 ILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTKEYQQLAA  154 (155)
T ss_pred             EEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999988899999999999999999999999998888888887764

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.95  E-value=2e-26  Score=200.47  Aligned_cols=201  Identities=17%  Similarity=0.287  Sum_probs=149.4

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCC-----
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSN-----  112 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~-----  112 (270)
                      ..++..+.||+++.|++++.|.+++.||++|.|+++++|.+.         ...+.||++|.|+++++|+.+...     
T Consensus        24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~  103 (255)
T PRK12461         24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTR  103 (255)
T ss_pred             CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEE
Confidence            344566777777777777777788888888888888887642         236899999999999999865421     


Q ss_pred             ---------CCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          113 ---------LSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       113 ---------~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                               +....|++.||++|+|++++.+.+ ++|||+++||.++.|.++++||++++|+++|+|++|  |||++++.
T Consensus       104 IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~  181 (255)
T PRK12461        104 IGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMA  181 (255)
T ss_pred             EcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEe
Confidence                     122357788888888888887755 999999999999999999999999999999999999  99999999


Q ss_pred             ecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          183 GNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       183 G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      |+||++. .+..--+++..-..+....+.++|+..|...+...++.+++.++.+ ..++..+...|+++
T Consensus       182 G~pa~~~-~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~  248 (255)
T PRK12461        182 GHPTNVH-GLNAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQF-ESPEVEELIDFIKA  248 (255)
T ss_pred             cCcceEe-ccchhhhhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHc
Confidence            9999952 2222111111112233445557777777888877787777776544 45777778877754

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.94  E-value=2.6e-25  Score=179.87  Aligned_cols=153  Identities=43%  Similarity=0.733  Sum_probs=142.3

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      |.+.++++|+|.+.|.+++.||++|.|+++++|.++..+++||++|.|+++|.|....      ..+++||+++.|++++
T Consensus         1 ~~~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~------~~~~~Ig~~~~I~~~~   74 (154)
T cd04650           1 PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH------GYPTEIGDYVTIGHNA   74 (154)
T ss_pred             CccCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC------CCCeEECCCCEECCCc
Confidence            3578999999999999999999999999999999876779999999999999998521      1369999999999999


Q ss_pred             EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHH
Q 024224          133 VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA  211 (270)
Q Consensus       133 ~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~  211 (270)
                      .+.++.||++|+|+.++.+.+++.||+++++++++.|.++..+|+++++.|+||++++.++++++++++...+.|.+++
T Consensus        75 ~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~  153 (154)
T cd04650          75 VVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEYVELA  153 (154)
T ss_pred             EEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998889999999999999999999999999999999888764

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.94  E-value=1e-25  Score=197.30  Aligned_cols=200  Identities=18%  Similarity=0.224  Sum_probs=136.8

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCCC-----
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSNL-----  113 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~~-----  113 (270)
                      .++..+.||+++.|++++.|.+++.||++|.|+++++|.++         ...+.||++|.|+++|+|.......     
T Consensus        28 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~  107 (262)
T PRK05289         28 VIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTR  107 (262)
T ss_pred             EECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeE
Confidence            34556677777777777777777888888888888887642         1258899999999999887653210     


Q ss_pred             ----------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          114 ----------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       114 ----------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                                ....|++.||++|.+++++.+.+ ++|||+||||.++.|.++++||++++|+++|+|.+|  ||++++++
T Consensus       108 IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~  185 (262)
T PRK05289        108 IGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAE  185 (262)
T ss_pred             ECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEEe
Confidence                      01124455555555555554443 899999999999999999999999999999999999  99999999


Q ss_pred             ecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          183 GNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       183 G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      |+|++++. +...-++...-..+....+.++|+..+.......++++++.++.. ..++..+...|+++
T Consensus       186 G~pa~~~~-~n~~g~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~  252 (262)
T PRK05289        186 GNPARLRG-LNLVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEEYP-DSPEVKEILDFIES  252 (262)
T ss_pred             cccCeEec-cchhhhhhCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhcc-CCHHHHHHHHHHhc
Confidence            99999852 211111111111223345556666666666666666666655443 45667777777765

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.94  E-value=4.2e-26  Score=190.25  Aligned_cols=199  Identities=19%  Similarity=0.280  Sum_probs=114.4

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEEC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIG  123 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig  123 (270)
                      .+++.+.+.|++++.|+|+|.|+++++||+++.|+++++|.|.   .+||+++.|.+.+.|...+++  |.+....+.||
T Consensus         9 TAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~---T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG   85 (260)
T COG1043           9 TAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGH---TTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG   85 (260)
T ss_pred             ceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCC---eEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence            4556677777788888888888877888777777777777643   344444444444444444443  33333334444


Q ss_pred             CCcEECcCcEE--------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCc---
Q 024224          124 DNVTVGHSAVL--------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTR---  174 (270)
Q Consensus       124 ~~v~I~~~~~i--------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~---  174 (270)
                      +++.|++++++                          |+|+||++|.+.+|+++.++|.|||+++||+.+-|++.++   
T Consensus        86 ~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~  165 (260)
T COG1043          86 DNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGA  165 (260)
T ss_pred             CCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcc
Confidence            44444444433                          3455555555555555555555555554444444444333   


Q ss_pred             -------------cCCCcEEeecCceeccCCCHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccC
Q 024224          175 -------------IPSGEVWGGNPAKFLRKLTDEEIAFISQ---SATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARR  238 (270)
Q Consensus       175 -------------I~~~~iv~G~pa~~i~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (270)
                                   ||||.++.|+|++.-. ++-.-   +++   ..+++..+.++|+..|.....-.|+..++.+..+ .
T Consensus       166 ~amiGg~S~v~~DVpPy~~~~Gn~a~l~G-lN~vG---lkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~-~  240 (260)
T COG1043         166 HAMIGGLSAVSQDVPPYVIASGNHARLRG-LNIVG---LKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYA-D  240 (260)
T ss_pred             hheeccccccccCCCCeEEecCCcccccc-cceee---eeccCCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhc-C
Confidence                         6666666666665431 00000   111   1345556667888888888777777777766655 4


Q ss_pred             hHHHhhhccccccC
Q 024224          239 DEEYDSMLGVVRET  252 (270)
Q Consensus       239 ~~~~~~~~~~~~~~  252 (270)
                      .++......|+...
T Consensus       241 ~~~v~~~~dFi~~s  254 (260)
T COG1043         241 NPEVKEFIDFIASS  254 (260)
T ss_pred             ChHHHHHHHHHhhc
Confidence            57777777776543

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.93  E-value=3.9e-24  Score=172.80  Aligned_cols=151  Identities=58%  Similarity=0.981  Sum_probs=141.5

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      ++++++|+|.+.|.+++.||++|.|++++.|.++.++++||++|.|+++++|.....      ++++||+++.|+.++.+
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~------~~~~Ig~~~~I~~~~~i   75 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG------YPTIIGDNVTVGHGAVL   75 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC------CCeEEcCCcEECCCcEE
Confidence            688999999999999999999999999999998878999999999999999986432      46899999999999999


Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHH
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA  211 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~  211 (270)
                      .++.||++++|++++.+.++++|+++|+|++++.|.+++.+|+++++.|.|++++++++..+...+++....|.+|+
T Consensus        76 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (153)
T cd04645          76 HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEIAELRESAEHYVELA  152 (153)
T ss_pred             eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888888764

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.92  E-value=5.7e-24  Score=173.70  Aligned_cols=136  Identities=16%  Similarity=0.240  Sum_probs=124.2

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      +|+++++|+|.+.|.+++.||++|.|++++.|.++.++++||++|.|+++|+|......+.+...++.||+++.+..++.
T Consensus         1 ~~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~   80 (164)
T cd04646           1 KIAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCK   80 (164)
T ss_pred             CcCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcE
Confidence            37899999999999999999999999999999876678999999999999999875543334456789999999999999


Q ss_pred             EeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          134 LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       134 i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      +.+++||++||||++|+|.++++||++|+||++++|.+++.+|+++++.|+|+...
T Consensus        81 i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~  136 (164)
T cd04646          81 CEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRR  136 (164)
T ss_pred             EEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEE
Confidence            99999999999999999999999999999999999999999999999999988644

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.92  E-value=1.4e-23  Score=183.09  Aligned_cols=141  Identities=21%  Similarity=0.313  Sum_probs=114.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCCC----
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSNL----  113 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~~----  113 (270)
                      ..+...+.|++++.|+|++.|.+++.||++|.|+++++|.+.         ..+++||++|.|+++|+|.......    
T Consensus        23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~  102 (254)
T TIGR01852        23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT  102 (254)
T ss_pred             CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence            345667788888899999999999999999999999999732         2368999999999999998653211    


Q ss_pred             -----------CCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          114 -----------SGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       114 -----------~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                                 ....++++||++|.|++++.+. +++||++|+||+++.|.++++||++++|+++++|+++  ||+++++
T Consensus       103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~  180 (254)
T TIGR01852       103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLV  180 (254)
T ss_pred             EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcEE
Confidence                       0012556666666666666554 4899999999999999999999999999999999998  9999999


Q ss_pred             eecCceec
Q 024224          182 GGNPAKFL  189 (270)
Q Consensus       182 ~G~pa~~i  189 (270)
                      +|+|++..
T Consensus       181 ~G~pa~~~  188 (254)
T TIGR01852       181 EGNRARLR  188 (254)
T ss_pred             ecCcCeec
Confidence            99999983

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.92  E-value=1.4e-23  Score=183.17  Aligned_cols=192  Identities=19%  Similarity=0.263  Sum_probs=129.1

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCCC----
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSNL----  113 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~~----  113 (270)
                      ..+...+.|++++.|+|++.|.+++.||++|.|+++++|.+.         ...++||++|.|+++|+|.......    
T Consensus        24 ~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~  103 (254)
T cd03351          24 CVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVT  103 (254)
T ss_pred             cEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCce
Confidence            344566777888888888888888888888888888888632         2368899999999999987643211    


Q ss_pred             -----------CCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          114 -----------SGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       114 -----------~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                                 ....+++.||++|.|+.++.+ ++++||++|+||+++.|.++++||++++|+++|+|.++  ||+++++
T Consensus       104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~  181 (254)
T cd03351         104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIA  181 (254)
T ss_pred             EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee--cCCCeEE
Confidence                       001133444444444444433 34899999999999999999999999999999999998  8999999


Q ss_pred             eecCceecc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          182 GGNPAKFLR---------KLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       182 ~G~pa~~i~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      +|+|+++..         .++++...          ++.+.|+..+.......++..++.++.. ..++..+...|+++
T Consensus       182 ~G~~~~~~~~~~~g~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~  249 (254)
T cd03351         182 AGNRARLRGLNLVGLKRRGFSREEIR----------ALKRAYRILYRSGLTLEEALEELEEEAP-DSPEVEELVDFIRS  249 (254)
T ss_pred             EccCCeEeccceeceeecCCCHHHHH----------HHHHHHHHHHhcCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHh
Confidence            999997542         33333333          3333343333333333444444444322 35666666777764

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.91  E-value=5.9e-23  Score=172.38  Aligned_cols=164  Identities=18%  Similarity=0.334  Sum_probs=123.1

Q ss_pred             HHHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECC
Q 024224           19 GQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGS   96 (270)
Q Consensus        19 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~   96 (270)
                      ......++.+++...... .-.+...+..+++   .+|++++|.|.+.+.  .++.||++++|+.+|+|. +.+.++||+
T Consensus        26 ~~~~~~~~~~~n~~~~~~-~~~~~~ll~~~~~---~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~-d~~~I~IGd  100 (203)
T PRK09527         26 RLRGKTLMYEFNHSHPSE-VEKRESLIKEMFA---TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGD  100 (203)
T ss_pred             HHHHHHHHHHHcCCCCCC-HHHHHHHHHHhhh---hcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEe-cCCCEEECC
Confidence            344445555655432221 1112233444444   489999999998874  689999999999999998 446899999


Q ss_pred             CCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc-EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224           97 GTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA-VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI  175 (270)
Q Consensus        97 ~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~-~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I  175 (270)
                      +|.|+++|+|.+..|+....     .     -..+. ..++++||++||||++++|.++++||++|+|++||+|.++  +
T Consensus       101 ~v~Ig~~v~I~~~~h~~~~~-----~-----r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--v  168 (203)
T PRK09527        101 NVLIAPNVTLSVTGHPVHHE-----L-----RKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--I  168 (203)
T ss_pred             CCEECCCCEEEeCCCCCChh-----h-----ccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--C
Confidence            99999999998755432100     0     00111 2356999999999999999999999999999999999998  9


Q ss_pred             CCCcEEeecCceeccCCCHHHHHH
Q 024224          176 PSGEVWGGNPAKFLRKLTDEEIAF  199 (270)
Q Consensus       176 ~~~~iv~G~pa~~i~~~~~~~~~~  199 (270)
                      |++++++|+||++++.+.+.+..+
T Consensus       169 p~~~v~~G~PAk~i~~~~~~~~~~  192 (203)
T PRK09527        169 PPNVVAAGVPCRVIREINDRDKQY  192 (203)
T ss_pred             CCCcEEEeeCCEEeccCCHHHHHH
Confidence            999999999999999997665444

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.90  E-value=1.4e-22  Score=165.10  Aligned_cols=152  Identities=19%  Similarity=0.376  Sum_probs=134.1

Q ss_pred             eCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCC--CccCeEECCCcEECc
Q 024224           55 VDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSG--KVLPTTIGDNVTVGH  130 (270)
Q Consensus        55 i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~--~~~~~~Ig~~v~I~~  130 (270)
                      ...+..|++.+.|.+  ++.||+++.|++++.|.++.++++||++|.|+++|+|.+..+...+  ...+++||++++|++
T Consensus         4 ~~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~   83 (161)
T cd03359           4 TASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGE   83 (161)
T ss_pred             CcCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECC
Confidence            445678888888865  7999999999999999988778999999999999999975433222  224789999999999


Q ss_pred             CcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHH
Q 024224          131 SAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATN  206 (270)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~  206 (270)
                      ++.+..+.||++++||.++.|.+++.|+++++|+++++|.+++.+|++++++|+||++++++++.+.+++....++
T Consensus        84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~~~~  159 (161)
T cd03359          84 NCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEETKE  159 (161)
T ss_pred             CCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhhHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999988877654443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.90  E-value=2.4e-23  Score=173.83  Aligned_cols=167  Identities=18%  Similarity=0.215  Sum_probs=135.2

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------CceEECCCCEECCCCEEEcCCCC----
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISVGSGTNIQDNSLVHVAKSN----  112 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~v~IG~~~~I~~~~~I~~~~~~----  112 (270)
                      +.++++.+.|++++.|++.++|.+.++||+++.|.+.+.|..++         ..+.||++|.|.++++|+.++..    
T Consensus        27 f~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g~  106 (260)
T COG1043          27 FCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGV  106 (260)
T ss_pred             eEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCcee
Confidence            56778889999999999999999999999999999999997443         57999999999999999987643    


Q ss_pred             -----------CCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecC----CCccC
Q 024224          113 -----------LSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ----NTRIP  176 (270)
Q Consensus       113 -----------~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~----~~~I~  176 (270)
                                 +....|+|.||++|.+..+++|.+ +.|||++.||..+-|-+-|+||++|+||+.|.|.+    .+.+.
T Consensus       107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~  186 (260)
T COG1043         107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIAS  186 (260)
T ss_pred             EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCCCeEEec
Confidence                       234589999999999999999988 99999999999999999999999999999988744    22111


Q ss_pred             -CCcEEeec--CceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224          177 -SGEVWGGN--PAKFLRKLTDEEIAFISQSATNYSNLAQ  212 (270)
Q Consensus       177 -~~~iv~G~--pa~~i~~~~~~~~~~~~~~~~~~~~l~~  212 (270)
                       ..+...|.  -.-..+.++.+++..+++..+.+++-..
T Consensus       187 Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~  225 (260)
T COG1043         187 GNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGL  225 (260)
T ss_pred             CCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCC
Confidence             12222231  1223467899999999988887665544

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.89  E-value=2.1e-22  Score=172.80  Aligned_cols=128  Identities=32%  Similarity=0.555  Sum_probs=118.7

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .++.++.|+|++.+.+++.||+++.|++++.|.+   ++.||++|.|+++++|..          .+.||++|+|+.++.
T Consensus        82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~I~~----------~s~Ig~~~~Ig~~~~  148 (231)
T TIGR03532        82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINI---GAEIGEGTMIDMNAVLGG----------RATVGKNVHIGAGAV  148 (231)
T ss_pred             ccccccEECCCCEEeCCeEECCCCEEecCcccCC---CeEECCCCEEccccccCC----------CcEECCCcEEcCCcE
Confidence            3578899999999999999999999999999984   579999999999999853          789999999999999


Q ss_pred             Ee---------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          134 LH---------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       134 i~---------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      +.         ++.||++|+||++++|.++++||++++|+++++|.++  +|++++++|+||++++.+++..
T Consensus       149 I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~~i~~~~~~~  218 (231)
T TIGR03532       149 LAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAKVIKQVDEKT  218 (231)
T ss_pred             EccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEeccCChhH
Confidence            96         4899999999999999999999999999999999998  9999999999999999998754

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.87  E-value=2.3e-21  Score=174.29  Aligned_cols=53  Identities=21%  Similarity=0.328  Sum_probs=49.8

Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      ++||++||||.++.|.++++||++++|+++|+|++|  +|+++++.|+||+..++
T Consensus       254 ~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~pa~~~~~  306 (324)
T TIGR01853       254 TKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKS--IPPPGVYGGIPARPNKE  306 (324)
T ss_pred             cEECCCeEEccccccccCCEECCCCEEccCCEeCCc--CCCCcEEEccCccHHHH
Confidence            789999999999999999999999999999999999  99999999999997663

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.87  E-value=2.9e-21  Score=162.90  Aligned_cols=62  Identities=29%  Similarity=0.574  Sum_probs=55.7

Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC-CCHHHHH
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEEIA  198 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~~~~~~  198 (270)
                      .++.||++|+||.+++|.++++||++++|+++++|.++  ||++++++|+||++++. ++++..+
T Consensus       107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~Pa~~~~~~~~~~~~~  169 (204)
T TIGR03308       107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVPAKLIRRRFPPEIAA  169 (204)
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecCchHhhhcCCHHHHH
Confidence            46899999999999999999999999999999999998  99999999999999875 4444433

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.86  E-value=1.1e-20  Score=171.73  Aligned_cols=99  Identities=16%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             ceEECCCCEECCCCEEEcCCCCCCC------------CccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEE
Q 024224           91 SISVGSGTNIQDNSLVHVAKSNLSG------------KVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV  157 (270)
Q Consensus        91 ~v~IG~~~~I~~~~~I~~~~~~~~~------------~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~I  157 (270)
                      .+.||+++.||.+++|..+.....-            ..|++.||++|.|+.++.+. +++||++|+||.++.|.++++|
T Consensus       203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~i  282 (343)
T PRK00892        203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEI  282 (343)
T ss_pred             cEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEE
Confidence            3555556666555555432211110            12333333333333333333 3889999999999999999999


Q ss_pred             CCCcEECCCCeecCCCccCC-CcEEeecCceeccC
Q 024224          158 ERHGMVAAGSLVRQNTRIPS-GEVWGGNPAKFLRK  191 (270)
Q Consensus       158 g~~~vIgagsvV~~~~~I~~-~~iv~G~pa~~i~~  191 (270)
                      |++++|++++.|.++  +|+ +.++.|+||+.+++
T Consensus       283 g~~~~i~~~s~v~~~--i~~~~~~~~G~pa~~~~~  315 (343)
T PRK00892        283 GDGVTITAMSGVTKS--IPEPGEYSSGIPAQPNKE  315 (343)
T ss_pred             CCCCEEecCCeeCCc--cCCCCeEEEeecCchHHH
Confidence            999999999999998  999 88889999987654

>PRK10502 putative acyl transferase; Provisional

Probab=99.86  E-value=1.6e-20  Score=155.83  Aligned_cols=132  Identities=20%  Similarity=0.301  Sum_probs=109.5

Q ss_pred             hhhccCCCceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEE
Q 024224           45 LMNIFDKAPAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTI  122 (270)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~I  122 (270)
                      ++.+++  ..||+++.|++++.|..  ++.||++|.|++++.|. +...++||++|.|+++++|....|++....     
T Consensus        46 ~lr~~g--a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~-~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~-----  117 (182)
T PRK10502         46 LLRLFG--AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLY-NLGEITIGAHCVISQKSYLCTGSHDYSDPH-----  117 (182)
T ss_pred             HHHHhc--cccCCCcEEcCCEEEecCCeEEECCCeEECCCceec-ccCceEECCCcEECCCeEEECCCCCCcCCC-----
Confidence            344443  46899999999998875  69999999999999998 346799999999999999987665432111     


Q ss_pred             CCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          123 GDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       123 g~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                             ......+++||++||||++|+|.+|++||++|+|+++++|.++  +|++++++|+||++++++.
T Consensus       118 -------~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~Pa~~ik~r~  179 (182)
T PRK10502        118 -------FDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNPAVPIRPRV  179 (182)
T ss_pred             -------cccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCcceEecccc
Confidence                   0112356899999999999999999999999999999999998  9999999999999998753

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.86  E-value=8.1e-21  Score=165.30  Aligned_cols=148  Identities=20%  Similarity=0.343  Sum_probs=125.1

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEECC
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIGD  124 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig~  124 (270)
                      +.+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+   ++.||++|.|+++++|...+++  +.+....+.||+
T Consensus         6 a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~   82 (255)
T PRK12461          6 AVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILG---PTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD   82 (255)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeC---CCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence            46678889999999999999999999999999999999994   5799999999999999876654  334445677888


Q ss_pred             CcEECcCcEE-------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCc
Q 024224          125 NVTVGHSAVL-------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE  179 (270)
Q Consensus       125 ~v~I~~~~~i-------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~  179 (270)
                      ++.|+++++|                         ++|.||++|+|++++.+..+++||++|+|++++.|.++++|++++
T Consensus        83 ~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a  162 (255)
T PRK12461         83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA  162 (255)
T ss_pred             ceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence            7777777766                         346778888888888888899999999999999999999999999


Q ss_pred             EEeecCceeccCCCHHHHH
Q 024224          180 VWGGNPAKFLRKLTDEEIA  198 (270)
Q Consensus       180 iv~G~pa~~i~~~~~~~~~  198 (270)
                      ++.+ -+.+.++++++.+.
T Consensus       163 ~Vg~-gs~V~~dVpp~~i~  180 (255)
T PRK12461        163 MMAG-GSRISKDVPPYCMM  180 (255)
T ss_pred             EECC-CceEeccCCCCeEE
Confidence            9987 48888888887653

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.86  E-value=1e-20  Score=159.85  Aligned_cols=139  Identities=17%  Similarity=0.262  Sum_probs=94.2

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC----------------
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN----------------  112 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~----------------  112 (270)
                      ++..+.|+++++|+|++.|.++++||++|.|++++.|..   .++||++|.|+++++|.....+                
T Consensus        16 i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~---~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~   92 (205)
T cd03352          16 IGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYE---GCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGG   92 (205)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC---CCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcce
Confidence            445556666666666666666666666666666666653   2456666666665555321100                


Q ss_pred             ---------------------CC------------CCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEEC
Q 024224          113 ---------------------LS------------GKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVE  158 (270)
Q Consensus       113 ---------------------~~------------~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig  158 (270)
                                           ..            ...+.+.||+++.|+.++.+ +++.||++|+||+++.|.++++||
T Consensus        93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig  172 (205)
T cd03352          93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIG  172 (205)
T ss_pred             EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEEC
Confidence                                 00            01123334444444444433 458999999999999999999999


Q ss_pred             CCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          159 RHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       159 ~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                      ++++|+++++|.++  +|++.++.|+||++++++
T Consensus       173 ~~~~i~~~s~v~~~--~~~~~~~~G~pa~~~~~~  204 (205)
T cd03352         173 DGVVIGAGSGVTSI--VPPGEYVSGTPAQPHREW  204 (205)
T ss_pred             CCCEEcCCCEEeeE--CCCCCEEEeecCchhhhc
Confidence            99999999999998  999999999999987654

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.86  E-value=1.3e-20  Score=156.25  Aligned_cols=123  Identities=25%  Similarity=0.449  Sum_probs=103.1

Q ss_pred             CCCEECCCcE--EecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           57 KDAFVAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        57 ~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      .+++|.|.+.  ++.++.||++++|+.+|+|. +.+.++||++|.|+++|+|.+..|+.+..          ....+..+
T Consensus        58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~~----------~~~~~~~~  126 (183)
T PRK10092         58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDPV----------ARNSGAEL  126 (183)
T ss_pred             CCEEEeCCEEEeecCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCChH----------Hcccccee
Confidence            3678888774  46789999999999999997 66789999999999999999876643221          11122222


Q ss_pred             -eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          135 -HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       135 -~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                       +++.||++||||++|+|.++++||++|+|+++++|.++  ||++++++|+||++++.+
T Consensus       127 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~PAr~i~~~  183 (183)
T PRK10092        127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL  183 (183)
T ss_pred             cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEecCcEEeecC
Confidence             45899999999999999999999999999999999998  999999999999998753

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.86  E-value=7e-20  Score=150.06  Aligned_cols=154  Identities=29%  Similarity=0.505  Sum_probs=121.8

Q ss_pred             CceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      .+.|+++++|+|++.|.+++.||++|+|++++.|.++. .++.||++|.|+++++|....      .+.+.||+++.|++
T Consensus         2 ~~~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~------~~~v~Ig~~~~I~~   75 (167)
T cd00710           2 EPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE------GYSVWIGKNVSIAH   75 (167)
T ss_pred             CCEeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC------CCCEEECCCceECC
Confidence            57899999999999999999999999999999998653 369999999999999997532      24799999999999


Q ss_pred             CcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe-------ecCceeccCCCHHHHHHHHH
Q 024224          131 SAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG-------GNPAKFLRKLTDEEIAFISQ  202 (270)
Q Consensus       131 ~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~-------G~pa~~i~~~~~~~~~~~~~  202 (270)
                      ++.+.+ +.||++|+||.+|.|. +++||++|+|++++.|. +..|++++++.       +.|.+.+.++.+...+..+.
T Consensus        76 ~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~  153 (167)
T cd00710          76 GAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADALPDVTDSAREFNEK  153 (167)
T ss_pred             CCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcccccccCChhHHHHHHH
Confidence            999987 9999999999999996 69999999999999996 34567666653       23333334444444444444


Q ss_pred             HHHHHHHHHHH
Q 024224          203 SATNYSNLAQV  213 (270)
Q Consensus       203 ~~~~~~~l~~~  213 (270)
                      ....|.++.+.
T Consensus       154 i~~~~~~~~~~  164 (167)
T cd00710         154 VITVNNELAEG  164 (167)
T ss_pred             Hhhhhhhhhhh
Confidence            44455555543

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.84  E-value=2e-20  Score=153.55  Aligned_cols=122  Identities=24%  Similarity=0.465  Sum_probs=101.7

Q ss_pred             eCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           55 VDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        55 i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      ++++++|.+.+.+  ..++.||++++|+++++|. +.+.++||++|.|+++|+|.+..|.....       +..   .+.
T Consensus        45 ~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~-------~~~---~~~  113 (169)
T cd03357          45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDPE-------ERN---RGL  113 (169)
T ss_pred             cCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCChh-------Hcc---ccc
Confidence            6788888888665  4579999999999999987 44689999999999999999766532211       110   122


Q ss_pred             -EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          133 -VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       133 -~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                       ..+++.||++||||++|+|.++++||++|+||++|+|.++  ||++++++|+|||++
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~PAkvi  169 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGNPARVI  169 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEccccEEC
Confidence             2356999999999999999999999999999999999998  999999999999975

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.84  E-value=6.1e-20  Score=153.66  Aligned_cols=145  Identities=19%  Similarity=0.254  Sum_probs=109.8

Q ss_pred             cCCCceeCCCCEECCCcEE----ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC
Q 024224           49 FDKAPAVDKDAFVAPSASI----IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD  124 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i----~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (270)
                      .+....+|+++++.+++.+    .+.+.||+++.|++++.|.. ..+++||++|.|++++.|.+..|.....  .. .-.
T Consensus        40 ~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~-~~~v~IG~~v~Ig~~v~I~~~~hg~~~~--~~-~~~  115 (192)
T PRK09677         40 NDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIAC-IESITIGRDTLIASKVFITDHNHGSFKH--SD-DFS  115 (192)
T ss_pred             CCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEcc-CceEEECCCCEECCCeEEECCCCccccc--cc-ccc
Confidence            4566678888888888877    34688999999999988873 3578899999999999888654421100  00 000


Q ss_pred             CcEEC---cCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHH
Q 024224          125 NVTVG---HSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAF  199 (270)
Q Consensus       125 ~v~I~---~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~  199 (270)
                      +..+.   ......+++||++|+||++++|.++++||++|+|+++|+|.++  +|++++++|+||++++.+.++...|
T Consensus       116 ~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~~~~w  191 (192)
T PRK09677        116 SPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHETKLW  191 (192)
T ss_pred             ccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCcccccc
Confidence            01111   1123456899999999999999999999999999999999998  9999999999999999988765443

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.83  E-value=1.6e-19  Score=158.81  Aligned_cols=59  Identities=14%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEc
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHV  108 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~  108 (270)
                      ..++.++.||+++.|+++++|++++.||++|+|+++++|.   .++.||++|.|++++.|..
T Consensus       124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~---~~~~IG~~v~I~~GavIG~  182 (338)
T COG1044         124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIY---HNVVIGNNVIIHSGAVIGA  182 (338)
T ss_pred             eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEe---cCcEECCceEECCCCEEcc
Confidence            3445555666666666666666666666666666666665   2345666666666666554

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.82  E-value=2.2e-19  Score=138.54  Aligned_cols=119  Identities=23%  Similarity=0.366  Sum_probs=101.9

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +++++.|++.+.|.+++.||++|.|++++.|.   .++.||++|.|++++.+.....            ....+..++.+
T Consensus         1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~---~~~~Ig~~~~I~~~~~i~~~~~------------~~~~~~~~~~~   65 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIY---EGVTIEDDVFIGPNVVFTNDLY------------PRSKIYRKWEL   65 (119)
T ss_pred             CCCCCEECCCcEECCCcEECCCcEECCCcEEe---CCeEECCCcEEcCCeEEecCCC------------Ccccccccccc
Confidence            46788888888888899999999999999996   3579999999999999974221            22333346678


Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceecc
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR  190 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~  190 (270)
                      .++.||++|+||+++.+.+++.|++++.|+++++|.++  +|+++++.|+|||+++
T Consensus        66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~--i~~~~~~~G~pa~~~~  119 (119)
T cd03358          66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD--VPPYALVVGNPARIIG  119 (119)
T ss_pred             CCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCc--CCCCeEEecCcceecC
Confidence            88999999999999999999999999999999999998  9999999999999764

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.81  E-value=2.2e-18  Score=156.65  Aligned_cols=125  Identities=12%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             EEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCC---------ccCeEECCCcEECcCcEE--
Q 024224           66 SIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK---------VLPTTIGDNVTVGHSAVL--  134 (270)
Q Consensus        66 ~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---------~~~~~Ig~~v~I~~~~~i--  134 (270)
                      .|++++.||++|.|+++++|.   ..+.||++|.|+++++|......+...         .+.+.||++|.||++++|  
T Consensus       144 ~I~~~~~IG~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~  220 (343)
T PRK00892        144 VIGDGVKIGADCRLHANVTIY---HAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDR  220 (343)
T ss_pred             EEcCCcEECCCCEeCCCeEEc---CCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEec
Confidence            333333344444444444443   235677777777777775432222111         135777777777777765  


Q ss_pred             ---------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          135 ---------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       135 ---------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                                           ++|+||++|+|++++.|..+++||++|+|++++.|.++++|++++++++. +.+.++++
T Consensus       221 ~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~-s~v~~~i~  299 (343)
T PRK00892        221 GALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAM-SGVTKSIP  299 (343)
T ss_pred             CccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecC-CeeCCccC
Confidence                                 34677777777777777888999999999999999999999999999875 55555555


Q ss_pred             H
Q 024224          194 D  194 (270)
Q Consensus       194 ~  194 (270)
                      +
T Consensus       300 ~  300 (343)
T PRK00892        300 E  300 (343)
T ss_pred             C
Confidence            5

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.81  E-value=1e-18  Score=152.45  Aligned_cols=184  Identities=17%  Similarity=0.230  Sum_probs=131.4

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCc-------
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKV-------  117 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~-------  117 (270)
                      .++.+.+.|++++.|+|++.|.+++.||+++.|+++|.|.+   +++||++|.|+++++|....++  +.+..       
T Consensus         5 a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~---~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   81 (254)
T TIGR01852         5 AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILG---HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD   81 (254)
T ss_pred             CEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEee---eEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence            35577889999999999999999999999999999999984   5899999999999999743221  00000       


Q ss_pred             ------------------cCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC
Q 024224          118 ------------------LPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG  178 (270)
Q Consensus       118 ------------------~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~  178 (270)
                                        +.++||+++.|+.++.+ ++|.||++|+|++++.+..+++||++|+|++++.|.++++|+++
T Consensus        82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~  161 (254)
T TIGR01852        82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY  161 (254)
T ss_pred             CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence                              34566666666666666 56888999999999999999999999999999999999999999


Q ss_pred             cEEeecCceeccCCCHHHHHH-----H--------H---HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 024224          179 EVWGGNPAKFLRKLTDEEIAF-----I--------S---QSATNYSNLAQVHAAENAKSFDEIEFEKVLRKK  234 (270)
Q Consensus       179 ~iv~G~pa~~i~~~~~~~~~~-----~--------~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  234 (270)
                      +++++ .+.+.+++++....+     .        .   -..+...++...|+..+....+.-+...++.+.
T Consensus       162 ~~Ig~-~s~V~~~i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (254)
T TIGR01852       162 AMIGG-LSAVSKDVPPYGLVEGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFRSGLPLREAAQQVAEE  232 (254)
T ss_pred             CEEee-eeeEeeecCCCcEEecCcCeecccceeeeecCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            98876 344555555332211     0        0   012334456666666666555444444444433

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.80  E-value=2e-18  Score=144.53  Aligned_cols=135  Identities=19%  Similarity=0.369  Sum_probs=88.8

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCCC---
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKSN---  112 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~~---  112 (270)
                      +...+.|+++++|+|++.|.+++.||++|.|++++.|....             .++.||+++.|++++.|.....-   
T Consensus        12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~   91 (193)
T cd03353          12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG   91 (193)
T ss_pred             EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence            34556677777777777777777777777777777665220             01223333333333322210000   


Q ss_pred             ---------------------CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          113 ---------------------LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       113 ---------------------~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                                           ....-.++.||++|.|++++.+.        +++||+++|||.++++.++++||++++|
T Consensus        92 ~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i  171 (193)
T cd03353          92 VHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATI  171 (193)
T ss_pred             CEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEE
Confidence                                 00001245666666666666552        4789999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEEeecC
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNP  185 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~p  185 (270)
                      +++++|+++  +|+++++.|.|
T Consensus       172 ~~gs~V~~~--v~~~~~v~~~~  191 (193)
T cd03353         172 AAGSTITKD--VPPGALAIARA  191 (193)
T ss_pred             CCCCEEccc--cCCCCEEEecc
Confidence            999999998  99999999975

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.80  E-value=2e-18  Score=137.24  Aligned_cols=128  Identities=16%  Similarity=0.241  Sum_probs=109.6

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      .+++...|++++.|++.+.+..++.||+++.|++++.|..   .++||++|.|+.++.|....+.  ...+++.||++++
T Consensus         9 ~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~~~igg~~~~--~~~~~v~Ig~~~~   83 (139)
T cd03350           9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGS---CAQIGKNVHLSAGAVIGGVLEP--LQATPVIIEDDVF   83 (139)
T ss_pred             EECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECC---CCEECCCCEECCCCEECCcccc--cccCCeEECCCCE
Confidence            4566777888888888888888888999999999988863   4799999999999999753211  1235799999999


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC-cEEeecC
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG-EVWGGNP  185 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~-~iv~G~p  185 (270)
                      |++++++. ++.||+++.|+++++|.+++.|+++   +++++|.+|  +|++ .+++|+|
T Consensus        84 Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~~~g~~  138 (139)
T cd03350          84 IGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVVVAGSL  138 (139)
T ss_pred             ECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEEecccC
Confidence            99999884 6999999999999999999999999   999999999  9999 8899987

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.80  E-value=2e-18  Score=150.60  Aligned_cols=145  Identities=21%  Similarity=0.303  Sum_probs=113.5

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCc-------
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKV-------  117 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~-------  117 (270)
                      ..+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+   +++||++|.|+++++|...+++  +.+..       
T Consensus         6 a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~---~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   82 (254)
T cd03351           6 AIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDG---PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD   82 (254)
T ss_pred             CEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeC---CeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence            45677889999999999999999999999999999999984   5799999999999999653221  11111       


Q ss_pred             ------------------cCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC
Q 024224          118 ------------------LPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG  178 (270)
Q Consensus       118 ------------------~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~  178 (270)
                                        +.++||++|.|+.++.| ++|.||++|+|++++.+..+++||++|+|++++.|.++++|+++
T Consensus        83 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~  162 (254)
T cd03351          83 NNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRH  162 (254)
T ss_pred             CCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCC
Confidence                              23556666666666655 45777777777777778888999999999999999999999999


Q ss_pred             cEEeecCceeccCCCHH
Q 024224          179 EVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       179 ~iv~G~pa~~i~~~~~~  195 (270)
                      +++++ -+.+.+++++.
T Consensus       163 ~~Ig~-~s~V~~~i~~~  178 (254)
T cd03351         163 AMVGG-GSGVVQDVPPY  178 (254)
T ss_pred             CEECc-CCEEeeecCCC
Confidence            98876 36666666543

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.79  E-value=2e-18  Score=131.12  Aligned_cols=105  Identities=22%  Similarity=0.338  Sum_probs=88.3

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      ++.||+++.|++++.|. +.+.++||++|.|++++.|....|++..       .+..     ....++.||++||||.++
T Consensus         3 ~i~iG~~~~I~~~~~i~-~~~~i~IG~~~~I~~~~~I~~~~h~~~~-------~~~~-----~~~~~v~Ig~~~~ig~~~   69 (107)
T cd05825           3 NLTIGDNSWIGEGVWIY-NLAPVTIGSDACISQGAYLCTGSHDYRS-------PAFP-----LITAPIVIGDGAWVAAEA   69 (107)
T ss_pred             eEEECCCCEECCCCEEe-eCCceEECCCCEECCCeEeecCCCCCCc-------Cccc-----eecCCEEECCCCEECCCC
Confidence            57799999999999998 4467999999999999999876553221       1111     123568999999999999


Q ss_pred             EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      .|.++++||++|+|+++++|.++  +|++++++|+||+++
T Consensus        70 ~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G~Pa~~~  107 (107)
T cd05825          70 FVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAGNPAVPV  107 (107)
T ss_pred             EECCCCEECCCCEECCCCEEeCc--CCCCCEEECCccEeC
Confidence            99999999999999999999998  999999999999974

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.79  E-value=2.4e-18  Score=137.51  Aligned_cols=126  Identities=24%  Similarity=0.355  Sum_probs=96.4

Q ss_pred             eEECCCCEEcc-CCEEEcCCCceEECCCCEECCCCEEEcC-CCCCCC-CccCeEECCCcE-----ECcCcEEeceEECCC
Q 024224           71 VQVGRGSSIWY-GCVLRGDVNSISVGSGTNIQDNSLVHVA-KSNLSG-KVLPTTIGDNVT-----VGHSAVLHGCTVEDE  142 (270)
Q Consensus        71 v~IG~~~~I~~-~~~I~~~~~~v~IG~~~~I~~~~~I~~~-~~~~~~-~~~~~~Ig~~v~-----I~~~~~i~~~~Ig~~  142 (270)
                      +.||++++|++ .+.+. . ..++||++|.|++++.|... .|++.. ...+..++++..     ........++.||++
T Consensus         2 ~~iG~~s~i~~~~~~~~-~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~   79 (145)
T cd03349           2 ISVGDYSYGSGPDCDVG-G-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGND   79 (145)
T ss_pred             EEEeCceeeCCCCceEe-C-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCC
Confidence            56888899988 45554 3 57999999999999999887 665432 122333443332     122234467999999


Q ss_pred             cEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC-CHHHHHHH
Q 024224          143 AFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL-TDEEIAFI  200 (270)
Q Consensus       143 ~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~-~~~~~~~~  200 (270)
                      ||||++++|.++++||++|+|+++|+|.++  +|++++++|+||++++.+ +++..+.+
T Consensus        80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~Pa~~i~~~~~~~~~~~~  136 (145)
T cd03349          80 VWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIRYRFDEETIERL  136 (145)
T ss_pred             CEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEecCCEeehhhCCHHHHHHH
Confidence            999999999999999999999999999998  999999999999999874 44444443

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.79  E-value=1.4e-18  Score=144.88  Aligned_cols=131  Identities=21%  Similarity=0.334  Sum_probs=103.6

Q ss_pred             eCCCCEECCCcEE--e-cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           55 VDKDAFVAPSASI--I-GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        55 i~~~~~I~~~~~i--~-~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      ....+.+.+...+  + ..+.+|.+|.++.++.+. ....++||+++.++++|.|.+..|..+....        ..+..
T Consensus        49 ~~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~--------~~~~~  119 (190)
T COG0110          49 IGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDFVTA--------NIGAL  119 (190)
T ss_pred             cCCccEECCCEEEecCCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCChhhc--------ccCCc
Confidence            4444566666544  3 578999999999999975 5568999999999999999986553221110        01112


Q ss_pred             cEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          132 AVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       132 ~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      ....+++||++||||++|+|++|++||++++||++|+|++|  +|++++++|+||++++++.+..
T Consensus       120 ~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkd--vp~~~iv~G~Pa~vir~~~~~~  182 (190)
T COG0110         120 VGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--VPPYGIVAGNPARVIRKRDVVA  182 (190)
T ss_pred             eecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCc--cCCCeEEeCCcceEEEecchhh
Confidence            33356999999999999999999999999999999999999  9999999999999998876554

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.78  E-value=2.8e-18  Score=149.47  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=87.4

Q ss_pred             CCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECC
Q 024224           62 APSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVED  141 (270)
Q Consensus        62 ~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~  141 (270)
                      ...+.+..++.|+.++.|++++.|... ..++||++|.||++|+|..          +++||...   ..+....++||+
T Consensus       133 ~~~~~~~~gidI~~~a~IG~g~~I~h~-~givIG~~a~IGdnv~I~~----------~VtiGg~~---~~~~~~~p~IGd  198 (273)
T PRK11132        133 QNQISVAFQVDIHPAAKIGRGIMLDHA-TGIVIGETAVIENDVSILQ----------SVTLGGTG---KTSGDRHPKIRE  198 (273)
T ss_pred             hhcceeeeeeEecCcceECCCeEEcCC-CCeEECCCCEECCCCEEcC----------CcEEecCc---ccCCCcCCEECC
Confidence            334444455666666666666666532 3578888888888888853          45555321   112223479999


Q ss_pred             CcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          142 EAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       142 ~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +|+||+||.|.++++||++|+||+||+|.++  ||++++++|+||++++...
T Consensus       199 ~V~IGaga~Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v~G~PArvi~~~~  248 (273)
T PRK11132        199 GVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARIVGKPE  248 (273)
T ss_pred             CcEEcCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCcEEeCccc
Confidence            9999999999999999999999999999998  9999999999999987653

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.78  E-value=4.8e-18  Score=142.15  Aligned_cols=115  Identities=30%  Similarity=0.573  Sum_probs=104.0

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-
Q 024224           57 KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-  135 (270)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-  135 (270)
                      ..+.+++.+.+.+++.||+++.|+++++|.+   +++||++|.|+.++.|..          ++.||++++|+.++.+. 
T Consensus        86 ~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~  152 (201)
T TIGR03570        86 FATLIHPSAIVSPSASIGEGTVIMAGAVINP---DVRIGDNVIINTGAIVEH----------DCVIGDYVHIAPGVTLSG  152 (201)
T ss_pred             ceEEecCCeEECCCCEECCCCEECCCCEECC---CCEECCCcEECCCCEEcC----------CCEECCCCEECCCCEEeC
Confidence            3457778888888888999999999999873   479999999999999953          78999999999999887 


Q ss_pred             ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCc
Q 024224          136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA  186 (270)
Q Consensus       136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa  186 (270)
                      ++.||++|+||.++.+.+++.||++|+|+++++|.++  +|++++|.|+||
T Consensus       153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~pa  201 (201)
T TIGR03570       153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVPA  201 (201)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEeccC
Confidence            5999999999999999999999999999999999998  999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.78  E-value=4.4e-18  Score=153.12  Aligned_cols=146  Identities=15%  Similarity=0.297  Sum_probs=91.8

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------CceEECCCCEECCCCEEEcCCCCC
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISVGSGTNIQDNSLVHVAKSNL  113 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~v~IG~~~~I~~~~~I~~~~~~~  113 (270)
                      +.+.+.|+++++|+|++.|++++.||++|.|+++++|.++.               .+++||++|.|+++|+|......+
T Consensus       100 i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~  179 (324)
T TIGR01853       100 VDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGY  179 (324)
T ss_pred             eCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccc
Confidence            34444455555555555555544555554444444443211               245666666666666665322211


Q ss_pred             CC----------CccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCC
Q 024224          114 SG----------KVLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERH  160 (270)
Q Consensus       114 ~~----------~~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~  160 (270)
                      ..          ..+.++||++|.||.++++                       ++|.||++|.|++++.|.++++||++
T Consensus       180 ~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~  259 (324)
T TIGR01853       180 AHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRN  259 (324)
T ss_pred             eeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCC
Confidence            10          0135778888888887766                       34666677777777777778888999


Q ss_pred             cEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       161 ~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      |++|+++.|.++++|++++++++. +.+.+++++.
T Consensus       260 ~~ig~~~~I~~~v~Ig~~~~ig~~-s~V~~~v~~~  293 (324)
T TIGR01853       260 VIIGGQVGVAGHLEIGDNVTIGAK-SGVTKSIPPP  293 (324)
T ss_pred             eEEccccccccCCEECCCCEEccC-CEeCCcCCCC
Confidence            999999999999999999988874 6666666553

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.78  E-value=4.6e-18  Score=146.91  Aligned_cols=116  Identities=24%  Similarity=0.404  Sum_probs=85.9

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-
Q 024224           56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-  134 (270)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-  134 (270)
                      ..+++|.|++.+..++.||+++.|+++ .+..   ++.||++|.|..+++|..          ++.||++|+|..++.+ 
T Consensus        98 ~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vni---ga~IGeGt~I~~~a~IG~----------~v~IG~nv~I~~g~~Ig  163 (269)
T TIGR00965        98 KAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNI---GAYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIG  163 (269)
T ss_pred             cCCEEECCCcEECCCcEECCCCEEeee-EEcC---CcEECCCCEECCCcEECC----------CCEECCCCEEcCCcccC
Confidence            446677777777777777777777765 3331   256777777777777753          7788888888888877 


Q ss_pred             --------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEEe-e-cC
Q 024224          135 --------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVWG-G-NP  185 (270)
Q Consensus       135 --------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv~-G-~p  185 (270)
                              ++++|||+|+||++|.|.+|++||++|+||+|++|.+++             .||+++++. | .|
T Consensus       164 G~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g~~p  237 (269)
T TIGR00965       164 GVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNLP  237 (269)
T ss_pred             CCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecCCee
Confidence                    447888888888888888888888888888888886643             489999997 3 56

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.78  E-value=5.2e-18  Score=140.73  Aligned_cols=115  Identities=30%  Similarity=0.574  Sum_probs=104.8

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      ...+.+++.+.+.+++.+|.+|.|+++++|.+   +++||++|.|++++.|..          ++.||++|+|+.++.+.
T Consensus        82 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~  148 (197)
T cd03360          82 RFATLIHPSAVVSPSAVIGEGCVIMAGAVINP---DARIGDNVIINTGAVIGH----------DCVIGDFVHIAPGVVLS  148 (197)
T ss_pred             ccceEECCCeEECCCCEECCCCEEcCCCEECC---CCEECCCeEECCCCEECC----------CCEECCCCEECCCCEEc
Confidence            44567888888888899999999999999974   479999999999999953          78999999999999886


Q ss_pred             c-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecC
Q 024224          136 G-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP  185 (270)
Q Consensus       136 ~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~p  185 (270)
                      + ++||++|+||.+++|.+++.||++++|+++++|.++  +|+++++.|+|
T Consensus       149 ~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g~p  197 (197)
T cd03360         149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVGNP  197 (197)
T ss_pred             CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEecC
Confidence            5 999999999999999999999999999999999998  99999999998

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.78  E-value=5.4e-18  Score=149.27  Aligned_cols=156  Identities=16%  Similarity=0.229  Sum_probs=90.1

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC----------------CceEECCCCEECCCCEEEcCC
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV----------------NSISVGSGTNIQDNSLVHVAK  110 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~----------------~~v~IG~~~~I~~~~~I~~~~  110 (270)
                      .++++++.||++++|+++++|..++.||++|.|+++++|..+.                ++++||++|.||.+++|..+.
T Consensus       142 ~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga  221 (338)
T COG1044         142 AVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGA  221 (338)
T ss_pred             CEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceecccc
Confidence            4555566666666666666666667777777777777775432                456777777777777776653


Q ss_pred             CCCCC------------CccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          111 SNLSG------------KVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       111 ~~~~~------------~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      .+.+-            .+|++.||.+|.|..++-|.+ +.||++|.||..+.|.++..|+|++.|++.+.|.++  |++
T Consensus       222 ~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~--i~~  299 (338)
T COG1044         222 LDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMAS--ITE  299 (338)
T ss_pred             ccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccc--cCC
Confidence            33111            123333333333333332222 566666666666666677777777777777777776  666


Q ss_pred             CcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ  212 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~  212 (270)
                      ..++.|.|+...+        .|.+....+..+.+
T Consensus       300 ~~~~gg~P~~p~k--------~w~k~~a~~~~l~~  326 (338)
T COG1044         300 PGYSGGIPAQPIK--------EWLKTAALIRRLPE  326 (338)
T ss_pred             CceeccCCCchHH--------HHHHHHHHHhhCHH
Confidence            6666666666443        44444444444444

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.77  E-value=9.3e-18  Score=157.57  Aligned_cols=140  Identities=21%  Similarity=0.356  Sum_probs=98.3

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCC----
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKS----  111 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~----  111 (270)
                      +...+.|++++.|++++.|.+++.||++|.|+++|.|....             .+..||++|.|++++.|.....    
T Consensus       258 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~  337 (451)
T TIGR01173       258 IRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG  337 (451)
T ss_pred             ECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC
Confidence            45566788889999999998888899998888888776210             0122333333333333221100    


Q ss_pred             --CC-----------C-------CCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          112 --NL-----------S-------GKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       112 --~~-----------~-------~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                        -.           .       ..-+++.||++|.|+.++++.        +++||++||||.++.|.++++||++|+|
T Consensus       338 ~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  417 (451)
T TIGR01173       338 VHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI  417 (451)
T ss_pred             cEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence              00           0       001236677777777777663        4899999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEEeecCceecc
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNPAKFLR  190 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~pa~~i~  190 (270)
                      ++|++|.++  ||+++++.|.|+++..
T Consensus       418 ~~g~~v~~~--v~~~~~~~~~~~~~~~  442 (451)
T TIGR01173       418 AAGSTVTKD--VPEGALAISRARQRNI  442 (451)
T ss_pred             ccCCEECcc--CCCCcEEEccCceeec
Confidence            999999999  9999999997776553

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PLN02739 serine acetyltransferase

Probab=99.76  E-value=1.6e-17  Score=147.63  Aligned_cols=82  Identities=27%  Similarity=0.390  Sum_probs=64.8

Q ss_pred             ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHH---HHHHHHHHHHHHHHH
Q 024224          136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEI---AFISQSATNYSNLAQ  212 (270)
Q Consensus       136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~---~~~~~~~~~~~~l~~  212 (270)
                      .++||++|+||+||+|.++++||++|+||+||+|.++  ||++++++|+||++++.....+-   .......+.+..+..
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~~~~~p~~~m~~DaT~e~~~~Ia~  334 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFVDEQDPSLTMEYDATREFFQNVAV  334 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccCCccchhhhhhhhhhHHHHHHHHH
Confidence            4789999999999999999999999999999999998  99999999999999987653321   111222345556666


Q ss_pred             HHHHHhc
Q 024224          213 VHAAENA  219 (270)
Q Consensus       213 ~~~~~~~  219 (270)
                      .|+..+.
T Consensus       335 ay~~lf~  341 (355)
T PLN02739        335 AYRETIP  341 (355)
T ss_pred             HHHhhcc
Confidence            6665544

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.76  E-value=1.6e-17  Score=156.02  Aligned_cols=139  Identities=20%  Similarity=0.328  Sum_probs=91.8

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC-----C---------CceEECCCCEECCCCEEEcCCCC----
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD-----V---------NSISVGSGTNIQDNSLVHVAKSN----  112 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-----~---------~~v~IG~~~~I~~~~~I~~~~~~----  112 (270)
                      ....|++++.|+|++.|++++.||++|.|++++.|.+.     .         .++.||++|.|++++.|....-.    
T Consensus       267 ~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~  346 (446)
T PRK14353        267 YDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAK  346 (446)
T ss_pred             CceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCE
Confidence            34455555566665555555555555555554443210     0         12344444444444444210000    


Q ss_pred             --CCCCccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          113 --LSGKVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       113 --~~~~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                        ......++.||++|.|+.++++        +++.||++|+||++++|.+++.||++++||++++|.++  +|+++++.
T Consensus       347 i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~~~~~  424 (446)
T PRK14353        347 VNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDDALAL  424 (446)
T ss_pred             ECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCCCEEE
Confidence              0001235678888888888765        25899999999999999999999999999999999998  99999999


Q ss_pred             ecCceeccC
Q 024224          183 GNPAKFLRK  191 (270)
Q Consensus       183 G~pa~~i~~  191 (270)
                      |.|....+.
T Consensus       425 g~~~~~~~~  433 (446)
T PRK14353        425 GRARQETKP  433 (446)
T ss_pred             ecCceEecc
Confidence            998876543

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.75  E-value=2.6e-17  Score=130.85  Aligned_cols=120  Identities=24%  Similarity=0.371  Sum_probs=100.9

Q ss_pred             CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe---
Q 024224           59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH---  135 (270)
Q Consensus        59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~---  135 (270)
                      ..|+|.+.+++++.|++++.|.+++.+..   .+.||++|.|+.+++|..          .++||++|.|++++.+.   
T Consensus         2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~---~~~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~~~igg~~   68 (139)
T cd03350           2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNI---GAYVDEGTMVDSWATVGS----------CAQIGKNVHLSAGAVIGGVL   68 (139)
T ss_pred             cccCCCcEECCCCEECCCCEECCCCEEcc---CCEECCCeEEcCCCEECC----------CCEECCCCEECCCCEECCcc
Confidence            35677777777777888888888888763   357888888888888853          78899999999999885   


Q ss_pred             ------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          136 ------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       136 ------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                            +++||++|+||++++|.++++||++++|+++++|.+++.|.++    |.-+-++++.++.
T Consensus        69 ~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~----~~~~~v~~~~~~~  130 (139)
T cd03350          69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR----ETGEIYYGRVPPG  130 (139)
T ss_pred             cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc----CcccEEecccCCC
Confidence                  4899999999999999999999999999999999999999887    7677777877654

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.75  E-value=1.1e-17  Score=128.94  Aligned_cols=151  Identities=17%  Similarity=0.321  Sum_probs=130.1

Q ss_pred             CCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCC--ccCeEECCCcEECcCcE
Q 024224           58 DAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK--VLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        58 ~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~--~~~~~Ig~~v~I~~~~~  133 (270)
                      +..+.....+-+  ++.+...+.+..+++|+||..++.||.+|.+++++.|....+.|+..  -.+..||++|.|+++|+
T Consensus        19 GNKVsr~~vlcGsQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cV   98 (184)
T KOG3121|consen   19 GNKVSRKHVLCGSQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECV   98 (184)
T ss_pred             CCcccceeEeeccceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceE
Confidence            334444455543  67788889999999999999999999999999999999866554432  25789999999999999


Q ss_pred             EeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHH
Q 024224          134 LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYS  208 (270)
Q Consensus       134 i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~  208 (270)
                      +....||..+.+|.+++|+.+|++.|.|.|-.++++.+++.+|+++.+.|+|+.+....|...+..+-...+.|+
T Consensus        99 VnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ctq~lMi~~tksyY  173 (184)
T KOG3121|consen   99 VNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCTQNLMIEATKSYY  173 (184)
T ss_pred             eehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888887777666555444

>PLN02694 serine O-acetyltransferase

Probab=99.75  E-value=1.4e-17  Score=145.37  Aligned_cols=107  Identities=23%  Similarity=0.371  Sum_probs=84.1

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      ++.|+.++.|++++.|.. ...++||++|.||++|+|..          ++++|..   +..+....++||++|+||+++
T Consensus       160 gvdI~p~A~IG~gv~Idh-~tGVVIGe~a~IGdnv~I~~----------~VtLGg~---g~~~~~r~piIGd~V~IGagA  225 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDH-ATGVVIGETAVIGNNVSILH----------HVTLGGT---GKACGDRHPKIGDGVLIGAGA  225 (294)
T ss_pred             eEEeCCcceecCCEEEeC-CCCeEECCCcEECCCCEEee----------cceeCCc---ccccCCCccEECCCeEECCee
Confidence            344555555555555542 23578888888888888863          5566553   334445679999999999999


Q ss_pred             EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                      +|.++++||++|+||+|++|.++  ||++++++|+||++++..
T Consensus       226 ~Ilggi~IGd~a~IGAgSVV~kd--VP~~~~v~G~PAkiv~~~  266 (294)
T PLN02694        226 TILGNVKIGEGAKIGAGSVVLID--VPPRTTAVGNPARLVGGK  266 (294)
T ss_pred             EECCCCEECCCCEECCCCEECCc--CCCCcEEEccCcEEEccC
Confidence            99999999999999999999998  999999999999999753

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=7.8e-18  Score=151.55  Aligned_cols=139  Identities=19%  Similarity=0.357  Sum_probs=104.4

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--------------CceEECCCCEECCCCEEEcCCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--------------NSISVGSGTNIQDNSLVHVAKS  111 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--------------~~v~IG~~~~I~~~~~I~~~~~  111 (270)
                      .-++...+.|+.++.|.|++.+.+++.||++|.|+++|+|. +.              ....||++|.||+.+.+.+++.
T Consensus       262 t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~  340 (460)
T COG1207         262 TTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAV  340 (460)
T ss_pred             eEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCc
Confidence            44667788999999999999999999999999999998875 21              1234444444444444433221


Q ss_pred             C------------------------CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECC
Q 024224          112 N------------------------LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVER  159 (270)
Q Consensus       112 ~------------------------~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~  159 (270)
                      -                        +...-+++.||.+|.||.|++..        .++||++++||+|+.+...++||+
T Consensus       341 L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd  420 (460)
T COG1207         341 LGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGD  420 (460)
T ss_pred             ccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecC
Confidence            0                        11123566777777888877652        389999999999999999999999


Q ss_pred             CcEECCCCeecCCCccCCCcEEeecCce
Q 024224          160 HGMVAAGSLVRQNTRIPSGEVWGGNPAK  187 (270)
Q Consensus       160 ~~vIgagsvV~~~~~I~~~~iv~G~pa~  187 (270)
                      ++.|++||+|++|  ||++++..+.+-.
T Consensus       421 ~a~iaAGStIT~D--Vp~~aLai~RarQ  446 (460)
T COG1207         421 GATIAAGSTITKD--VPEGALAISRARQ  446 (460)
T ss_pred             CcEEcccceEccc--CCCCceeEeecce
Confidence            9999999999999  9999999875433

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=2.5e-17  Score=154.76  Aligned_cols=142  Identities=17%  Similarity=0.288  Sum_probs=101.6

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc----CCC--------c------------------eEECCC
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG----DVN--------S------------------ISVGSG   97 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~~--------~------------------v~IG~~   97 (270)
                      +++..+.|++++.|+|++.|.+++.||++|.|++++.|..    +..        +                  +.||++
T Consensus       251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~  330 (448)
T PRK14357        251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS  330 (448)
T ss_pred             EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence            4455677888888888888888888888888888876531    100        1                  222222


Q ss_pred             CEECCCCEEEc-----CCCC-CCCCccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcEE
Q 024224           98 TNIQDNSLVHV-----AKSN-LSGKVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus        98 ~~I~~~~~I~~-----~~~~-~~~~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      |.|++++.+..     .... ......++.||++|.||.++++        ++++|||+++||.+++|.++++||++++|
T Consensus       331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i  410 (448)
T PRK14357        331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALI  410 (448)
T ss_pred             cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEE
Confidence            22232222211     0000 0001235788899999988876        35999999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEEeecCceeccC
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      ++|++|.++  ||++++++|.|.++++.
T Consensus       411 ~ag~~v~~~--v~~~~~~~g~~~~~~~~  436 (448)
T PRK14357        411 GAGSVITED--VPPYSLALGRARQIVKE  436 (448)
T ss_pred             cCCCEECCc--CCCCcEEEccccEEecc
Confidence            999999999  99999999999998753

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.74  E-value=4.1e-17  Score=142.18  Aligned_cols=129  Identities=26%  Similarity=0.419  Sum_probs=68.0

Q ss_pred             EECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec---
Q 024224           60 FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG---  136 (270)
Q Consensus        60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~---  136 (270)
                      ++.+++.+.++++|+.+++|++++.|.+    ..|+.++.|+++|.|.....    .++.+.||++|+|++++.+++   
T Consensus        99 ~~~~~~rI~p~a~V~~ga~Ig~gavI~p----~~V~iGa~Ig~gt~I~~~a~----IG~~a~IG~nv~I~~gv~I~g~~~  170 (272)
T PRK11830         99 FKEAGVRVVPGAVVRRGAYIAPNVVLMP----SYVNIGAYVDEGTMVDTWAT----VGSCAQIGKNVHLSGGVGIGGVLE  170 (272)
T ss_pred             hccCCcEEcCCeEECCCCEECCCcEEEE----EEECCCCEECCCcEEccccE----ECCCCEECCCcEECCCccCCCCcc
Confidence            3444444444555555555555555541    12222223333332222110    122455566666665555532   


Q ss_pred             ------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEEe-e-----------cC
Q 024224          137 ------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVWG-G-----------NP  185 (270)
Q Consensus       137 ------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv~-G-----------~p  185 (270)
                            ++||++|+||++++|..++.||++|+|+++++|.+++             .||+++++. |           .|
T Consensus       171 ~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~  250 (272)
T PRK11830        171 PLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYC  250 (272)
T ss_pred             ccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecCcccccCCCcCCcC
Confidence                  5666666666666666666666666666655555422             278899887 6           48


Q ss_pred             ceeccCCCHHH
Q 024224          186 AKFLRKLTDEE  196 (270)
Q Consensus       186 a~~i~~~~~~~  196 (270)
                      |++++.+.+..
T Consensus       251 ~~i~~~~~~~~  261 (272)
T PRK11830        251 AVIVKKVDAKT  261 (272)
T ss_pred             cEEEEEccccc
Confidence            88888775543

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=5.1e-17  Score=132.71  Aligned_cols=109  Identities=20%  Similarity=0.349  Sum_probs=76.4

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +-.++.|+|.|.|+.++.|..+.             .++||+.+.||++|+|..          .++||..-.=   +--
T Consensus        64 ~~~gieIhp~A~IG~g~fIdHg~-------------GvVIgeta~IGddv~I~~----------gVTLGgtg~~---~g~  117 (194)
T COG1045          64 FLFGIEIHPGAKIGRGLFIDHGT-------------GVVIGETAVIGDDVTIYH----------GVTLGGTGKE---SGK  117 (194)
T ss_pred             hhcceeeCCCCeECCceEEcCCc-------------eEEEcceeEECCCeEEEc----------ceEecCCCCc---CCC
Confidence            34445566655544433343322             245666666666666652          3444432111   111


Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      ...+||++|.||+||.|+++++||+|+.|||||||.++  ||++++++|.||+++..
T Consensus       118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkd--VP~~~tvvGvPArii~~  172 (194)
T COG1045         118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKD--VPPNATVVGVPARVIGR  172 (194)
T ss_pred             CCCccCCCeEECCCCEEEcceEECCCCEECCCceEccC--CCCCceEecCcceEecc
Confidence            23789999999999999999999999999999999999  99999999999999973

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=5.8e-17  Score=153.71  Aligned_cols=144  Identities=17%  Similarity=0.323  Sum_probs=107.9

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC------------CCceEECCCCEECCCCEEEcC------
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD------------VNSISVGSGTNIQDNSLVHVA------  109 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~------------~~~v~IG~~~~I~~~~~I~~~------  109 (270)
                      ++...+.|++++.|+|++.|.+++.||++|.|+++|+|.+.            ..++.||++|.|++++.|...      
T Consensus       267 ~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~  346 (482)
T PRK14352        267 WIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEE  346 (482)
T ss_pred             EEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCC
Confidence            34456678999999999999999999999999988887620            012334444555444444321      


Q ss_pred             CC--C----------------CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          110 KS--N----------------LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       110 ~~--~----------------~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      .+  .                +...-+++.||++|.||.++++.        ++.||++|+||.+++|.++++||++++|
T Consensus       347 ~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~i  426 (482)
T PRK14352        347 GKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYT  426 (482)
T ss_pred             CEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEE
Confidence            10  0                00011356888999999998774        3899999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEE-eecCceeccCCC
Q 024224          164 AAGSLVRQNTRIPSGEVW-GGNPAKFLRKLT  193 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv-~G~pa~~i~~~~  193 (270)
                      ++|++|.++  +|+++++ .|.|++.++.+.
T Consensus       427 gags~v~~~--v~~~~~~~~~~p~~~~~~~~  455 (482)
T PRK14352        427 GAGTVIRED--VPPGALAVSEGPQRNIEGWV  455 (482)
T ss_pred             CCCCEEcCC--CCCCcEEEeccccccccccc
Confidence            999999999  9999976 489999988754

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.73  E-value=1.7e-16  Score=129.38  Aligned_cols=121  Identities=19%  Similarity=0.262  Sum_probs=101.5

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      .+...+.|++++.|++++.+.+++.||++|.|++++.|.+   ++.||++|.|++++.|.           ++.|++++.
T Consensus        13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~---~~~Ig~~~~I~~~~~i~-----------~siig~~~~   78 (163)
T cd05636          13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRG---YTVLGDGCVVGNSVEVK-----------NSIIMDGTK   78 (163)
T ss_pred             EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcC---CCEECCCCEECCCcEEe-----------eeEecCCCE
Confidence            3345678999999999999999999999999999999984   46999999999999996           578888888


Q ss_pred             ECcCcEEeceEECCCcEECCccEECC------------------------CcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          128 VGHSAVLHGCTVEDEAFVGMGATLLD------------------------GVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       128 I~~~~~i~~~~Ig~~~~Ig~~a~I~~------------------------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                      |++++.+.++.|++++.|++++.+..                        ++.|+++++||+++.+.+++.|++++++.
T Consensus        79 I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~  157 (163)
T cd05636          79 VPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY  157 (163)
T ss_pred             eccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence            88888888888888888888887732                        57888888888888888887888777665

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=6.6e-17  Score=152.31  Aligned_cols=137  Identities=23%  Similarity=0.371  Sum_probs=96.9

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCC---------
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKS---------  111 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~---------  111 (270)
                      .+++++.|++++.|.+++.||++|.|+++|+|....             .++.||++|.|++++.|.....         
T Consensus       267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~  346 (456)
T PRK09451        267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGN  346 (456)
T ss_pred             EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecc
Confidence            467777888888777777777777777777775100             0123334444444443332110         


Q ss_pred             ---------------CCCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCe
Q 024224          112 ---------------NLSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL  168 (270)
Q Consensus       112 ---------------~~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsv  168 (270)
                                     +.....+++.||++|.||.++++.        +++|||+|+||.+|.|.++++||++++|++||+
T Consensus       347 ~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~  426 (456)
T PRK09451        347 FVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTT  426 (456)
T ss_pred             ceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCE
Confidence                           000012356788888888887663        478999999999999999999999999999999


Q ss_pred             ecCCCccCCCcEEe-ecCceeccCC
Q 024224          169 VRQNTRIPSGEVWG-GNPAKFLRKL  192 (270)
Q Consensus       169 V~~~~~I~~~~iv~-G~pa~~i~~~  192 (270)
                      |++|  ||+++++. |.|++.++++
T Consensus       427 v~~~--v~~~~~~~~~~~~~~~~~~  449 (456)
T PRK09451        427 VTRD--VAENELVISRVPQRHIQGW  449 (456)
T ss_pred             Eccc--cCCCCEEEeccCceecccc
Confidence            9999  99999985 5899988764

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=3.7e-17  Score=153.62  Aligned_cols=135  Identities=19%  Similarity=0.299  Sum_probs=101.3

Q ss_pred             CceeCCCCEECCCcEEe-----c----------CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC----
Q 024224           52 APAVDKDAFVAPSASII-----G----------DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN----  112 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~-----~----------~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~----  112 (270)
                      ...||+++.|++++.|.     .          ++.||++|.|++++.|.+   .+.||++|.|++++.|......    
T Consensus       280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~~~~i~~~~~  356 (450)
T PRK14360        280 NTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRP---EAQIGSNCRIGNFVEIKKSQLGEGSK  356 (450)
T ss_pred             CcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECC---CCEEeCceEECCCEEEeccccCCCcE
Confidence            44566666666655543     1          244566777777777763   3578888888887777532111    


Q ss_pred             --CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          113 --LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       113 --~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                        +....+++.||++|.||.++.+.        +++||++|+||.++.|.++++||++++|++||+|.++  ||+++++.
T Consensus       357 i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~  434 (450)
T PRK14360        357 VNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD--VPDNSLAI  434 (450)
T ss_pred             eccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc--CCCCCEEE
Confidence              11112467899999999998774        5899999999999999999999999999999999998  99999999


Q ss_pred             ecCceeccC
Q 024224          183 GNPAKFLRK  191 (270)
Q Consensus       183 G~pa~~i~~  191 (270)
                      |+|++.+++
T Consensus       435 g~~~~~~~~  443 (450)
T PRK14360        435 ARSRQVIKE  443 (450)
T ss_pred             eccceeecc
Confidence            988887643

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.72  E-value=1.2e-16  Score=150.67  Aligned_cols=135  Identities=25%  Similarity=0.498  Sum_probs=101.7

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC---------------
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN---------------  112 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~---------------  112 (270)
                      .++..+.|++++.|+|++.|.+++.||++|.|+++++|.+    +.||++|.|+.+++|....-.               
T Consensus       264 ~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~  339 (459)
T PRK14355        264 YIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKG----CRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGT  339 (459)
T ss_pred             EECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeC----CEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCC
Confidence            3455667888888888888888899999999999988862    466666666655554321000               


Q ss_pred             ----------C----------------CCCccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEEC
Q 024224          113 ----------L----------------SGKVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVE  158 (270)
Q Consensus       113 ----------~----------------~~~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig  158 (270)
                                +                ...-+++.||++|.||.++++        +++.||++|+||.++.|.++++||
T Consensus       340 ~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig  419 (459)
T PRK14355        340 ELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVG  419 (459)
T ss_pred             EeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEEC
Confidence                      0                000124577778888887755        248899999999999999999999


Q ss_pred             CCcEECCCCeecCCCccCCCcEEeecCcee
Q 024224          159 RHGMVAAGSLVRQNTRIPSGEVWGGNPAKF  188 (270)
Q Consensus       159 ~~~vIgagsvV~~~~~I~~~~iv~G~pa~~  188 (270)
                      ++++|+|+|+|.++  ||+++++.|.+...
T Consensus       420 ~~~~i~a~s~v~~~--v~~~~~~~~~~~~~  447 (459)
T PRK14355        420 RNSLIAAGTTVTKD--VPPDSLAIARSPQV  447 (459)
T ss_pred             CCCEECCCCEEccc--CCCCcEEEecccee
Confidence            99999999999998  99999999854443

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.71  E-value=2.7e-16  Score=132.78  Aligned_cols=137  Identities=17%  Similarity=0.276  Sum_probs=82.6

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEE------------cCCCCC-CCC----
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVH------------VAKSNL-SGK----  116 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~------------~~~~~~-~~~----  116 (270)
                      .++++++|+|.+.|.+++.||++++|++++.|.+   +++||++|.|+++++|.            ....-. +..    
T Consensus         3 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~   79 (205)
T cd03352           3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGD---GVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAP   79 (205)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECC---CCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEe
Confidence            3555556666666555555666666666555542   24555555555554443            322100 000    


Q ss_pred             ----------ccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCCcEE
Q 024224          117 ----------VLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       117 ----------~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                                .+.+.|++++.|+.++.+                       +++.||++++|++++.+..++.||++|+|
T Consensus        80 ~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i  159 (205)
T cd03352          80 DGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVII  159 (205)
T ss_pred             cCCcEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEE
Confidence                      013455555555554443                       23566666667777777788899999999


Q ss_pred             CCCCeecCCCccCCCcEEeecCceeccCCCH
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD  194 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~pa~~i~~~~~  194 (270)
                      +++++|.++++|++++++.+ .+.+.++.++
T Consensus       160 g~~~~v~~~~~ig~~~~i~~-~s~v~~~~~~  189 (205)
T cd03352         160 GGQVGIAGHLTIGDGVVIGA-GSGVTSIVPP  189 (205)
T ss_pred             cCCCEEeCCcEECCCCEEcC-CCEEeeECCC
Confidence            99999999999999998775 3555565554

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.70  E-value=1.4e-16  Score=139.62  Aligned_cols=149  Identities=21%  Similarity=0.294  Sum_probs=117.1

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEEC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIG  123 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig  123 (270)
                      .+++.+.+.|++++.|+|++.|.++++||++|.|+++++|.+   +++||++|.|+++++|...+++  +.+....+.||
T Consensus         8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g---~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG   84 (262)
T PRK05289          8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDG---HTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG   84 (262)
T ss_pred             CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcC---ccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence            455678889999999999999999999999999999999984   5799999999999999865543  23333356666


Q ss_pred             CCcEECcCcEEe--------------------------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          124 DNVTVGHSAVLH--------------------------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       124 ~~v~I~~~~~i~--------------------------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      ++|.|+++++|+                          +|.||++|++++++.+.++++||++|+||+++.|.++++|++
T Consensus        85 ~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~  164 (262)
T PRK05289         85 DNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGA  164 (262)
T ss_pred             CCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECC
Confidence            666666666553                          355555556666666667788999999999999999999999


Q ss_pred             CcEEeecCceeccCCCHHHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEEIA  198 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~~~  198 (270)
                      ++++.+ -+.+.+++++....
T Consensus       165 ~~~Ig~-gs~V~~di~~~~~~  184 (262)
T PRK05289        165 HAMVGG-MSGVSQDVPPYVLA  184 (262)
T ss_pred             CCEEee-ecceeccCCCCeEE
Confidence            998886 48888888866543

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.70  E-value=3e-16  Score=118.88  Aligned_cols=109  Identities=23%  Similarity=0.449  Sum_probs=89.6

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      +++||++++|++++.|.++ .++.||++|.|+++|.|....+        ..++..+.+.......++.||++|+|+.++
T Consensus         1 ~v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~   71 (109)
T cd04647           1 NISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNH--------DIDDPERPIEQGVTSAPIVIGDDVWIGANV   71 (109)
T ss_pred             CeEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCC--------CCCccccccccccccCCeEECCCCEECCCC
Confidence            3678888888888888853 4789999999999999986532        223334444445566779999999999999


Q ss_pred             EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      .+.+++.|+++++|++++.|.++  +|+++++.|.||+++
T Consensus        72 ~i~~~~~ig~~~~i~~~~~v~~~--i~~~~i~~g~pa~~~  109 (109)
T cd04647          72 VILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAGNPAKVI  109 (109)
T ss_pred             EEcCCCEECCCCEECCCCEEeeE--CCCCCEEEccccEeC
Confidence            99999999999999999999986  999999999999974

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PLN02296 carbonate dehydratase

Probab=99.70  E-value=1.2e-15  Score=133.49  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=115.8

Q ss_pred             chhhhHHHHHhHHHHHHHHHHHH-hccc-----------ccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEec
Q 024224            2 GTLGRAVYTVGFWIRETGQALDR-LGCR-----------LQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIG   69 (270)
Q Consensus         2 ~~~~~~i~~~g~~~~~~~~~l~~-~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~   69 (270)
                      +++.++++.+|..+..++-.+.. ..++           +.+.......-..... ...+...+.||+++.|++++.|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~p~I~~~~~I~p-~A~V~G~V~IG~~~~I~~gavI~g   87 (269)
T PLN02296          9 YTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAFVAP-SASVIGDVQVGRGSSIWYGCVLRG   87 (269)
T ss_pred             HHHHHHHHhhcchHhhhceeeecchHHHHHHHHHHHHHhhcCCCCccCCCCEECC-CcEEEcceEECCCCEECCCCEEEc
Confidence            46788999999999888877751 1111           1111111111101111 111223467889999999998887


Q ss_pred             C---eEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceE
Q 024224           70 D---VQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCT  138 (270)
Q Consensus        70 ~---v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~  138 (270)
                      +   +.||++|.|+++|+|..+.       .+++||++|.|+++|+|+           .++||++|+|+.++++ .+++
T Consensus        88 ~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~-----------g~~Igd~v~IG~ga~I~~gv~  156 (269)
T PLN02296         88 DVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLH-----------GCTVEDEAFVGMGATLLDGVV  156 (269)
T ss_pred             CCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceec-----------CCEECCCcEECCCcEECCCeE
Confidence            5   5999999999999997321       357999999999999985           6899999999999977 4699


Q ss_pred             ECCCcEECCccEECCCcEECCCcEE-CCCCeecCC
Q 024224          139 VEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQN  172 (270)
Q Consensus       139 Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~  172 (270)
                      ||+++.|+++|.|.+++.|++++++ |..+.+.++
T Consensus       157 Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~  191 (269)
T PLN02296        157 VEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRK  191 (269)
T ss_pred             ECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCC
Confidence            9999999999999999999999886 555655554

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.70  E-value=2.2e-16  Score=128.65  Aligned_cols=51  Identities=29%  Similarity=0.510  Sum_probs=48.6

Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCce
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK  187 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~  187 (270)
                      +.++||++|+||++|.|.++++||++|+|+++++|.+|  ||++++++|+|||
T Consensus       112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~G~Par  162 (162)
T TIGR01172       112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVVGVPAR  162 (162)
T ss_pred             cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEEeecCC
Confidence            45799999999999999999999999999999999998  9999999999986

Cysteine biosynthesis

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.70  E-value=3e-16  Score=146.64  Aligned_cols=74  Identities=22%  Similarity=0.422  Sum_probs=65.4

Q ss_pred             ccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee-cCce
Q 024224          117 VLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG-NPAK  187 (270)
Q Consensus       117 ~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G-~pa~  187 (270)
                      -++++||++|.||+++++.        +++||++|+||.+++|.++++||++++|++|++|.+|  +|+++++.| .|++
T Consensus       340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~~~~~~~  417 (430)
T PRK14359        340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD--VPKGSLAISRAPQK  417 (430)
T ss_pred             ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc--cCCCcEEEeccCce
Confidence            4678999999999998774        4899999999999999999999999999999999999  999999986 6776


Q ss_pred             eccCC
Q 024224          188 FLRKL  192 (270)
Q Consensus       188 ~i~~~  192 (270)
                      ..+.+
T Consensus       418 ~~~~~  422 (430)
T PRK14359        418 NIKNF  422 (430)
T ss_pred             ehhhH
Confidence            55543

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.69  E-value=3.6e-17  Score=135.24  Aligned_cols=56  Identities=32%  Similarity=0.626  Sum_probs=53.4

Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCH
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD  194 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~  194 (270)
                      ..||||||||++++|.++++||+|++|+|||+|.+|  ||++++++|+|||.++..++
T Consensus       201 P~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~~AvGnPAklIg~~~e  256 (269)
T KOG4750|consen  201 PKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNTLAVGNPAKLIGKIDE  256 (269)
T ss_pred             CcccCCeEEccccEEeCCeeECCCcEEeccceEEec--cCCCceecCCchhhcccccc
Confidence            489999999999999999999999999999999999  99999999999999987654

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.69  E-value=5.3e-16  Score=146.11  Aligned_cols=140  Identities=19%  Similarity=0.317  Sum_probs=99.5

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC----C--------CceEECCCCEECCCCEEEcCCC----
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD----V--------NSISVGSGTNIQDNSLVHVAKS----  111 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~--------~~v~IG~~~~I~~~~~I~~~~~----  111 (270)
                      +++..+.|++++.|++++.|.+++.||++|.|++++.|...    .        .+..||++|.|++++.|.....    
T Consensus       261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~  340 (458)
T PRK14354        261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEE  340 (458)
T ss_pred             EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCC
Confidence            45566778888888888888888888888888888877521    0        0123444444444444432100    


Q ss_pred             ---------------C-----CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          112 ---------------N-----LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       112 ---------------~-----~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                                     +     +....++++||++|.|+.++.+.        ++.||+++++|.+++|.++++||++++|
T Consensus       341 ~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v  420 (458)
T PRK14354        341 VKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYI  420 (458)
T ss_pred             cEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEE
Confidence                           0     00011345666667777766552        4889999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEEeecCceec
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      +++|+|.++  ||+++++.|.|..+-
T Consensus       421 ~~~~~v~~~--~~~~~~~~~~~~~~~  444 (458)
T PRK14354        421 AAGSTITKD--VPEDALAIARARQVN  444 (458)
T ss_pred             CCCCEECCC--CCCCCEEEeccceec
Confidence            999999998  999999999987753

>PLN02357 serine acetyltransferase

Probab=99.68  E-value=2.8e-16  Score=140.73  Aligned_cols=86  Identities=20%  Similarity=0.372  Sum_probs=66.8

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                      ++||++|.||++|+|..          +++||...   .......++||++|+||+||.|.++++||++++||+|++|.+
T Consensus       247 iVIGe~avIGdnV~I~~----------gVtIGg~g---~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~  313 (360)
T PLN02357        247 VVIGETAVVGNNVSILH----------NVTLGGTG---KQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK  313 (360)
T ss_pred             eEECCCCEECCCCEEeC----------CceecCcc---ccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence            55666666666666642          34444321   111124589999999999999999999999999999999999


Q ss_pred             CCccCCCcEEeecCceeccCC
Q 024224          172 NTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       172 ~~~I~~~~iv~G~pa~~i~~~  192 (270)
                      +  ||++++++|+||+++...
T Consensus       314 d--VP~~~~v~G~PArvv~~~  332 (360)
T PLN02357        314 D--VPPRTTAVGNPARLIGGK  332 (360)
T ss_pred             c--cCCCcEEECCCeEEEccC
Confidence            8  999999999999999754

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.68  E-value=1.4e-15  Score=124.21  Aligned_cols=112  Identities=16%  Similarity=0.310  Sum_probs=99.5

Q ss_pred             CCCceeCCCCEECCCcEEe---cCeEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccC
Q 024224           50 DKAPAVDKDAFVAPSASII---GDVQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLP  119 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~  119 (270)
                      .....||+++.|+|++.+.   +.+.||++|.|+++++|..+.       .++.||++|.|..++.|.           .
T Consensus        15 ~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~-----------~   83 (164)
T cd04646          15 RGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE-----------A   83 (164)
T ss_pred             cCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE-----------e
Confidence            4567899999999999986   569999999999999998542       357899999999999987           5


Q ss_pred             eEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224          120 TTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~  172 (270)
                      ++||++|+|+.++++ .+++||++|+||++|+|.+++.|+++++++++..+.+.
T Consensus        84 ~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~  137 (164)
T cd04646          84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRT  137 (164)
T ss_pred             eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEe
Confidence            999999999999988 55999999999999999999999999999999888885

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.67  E-value=2.5e-15  Score=123.12  Aligned_cols=118  Identities=26%  Similarity=0.433  Sum_probs=103.4

Q ss_pred             CCCceeCCCCEECCCcEEec----CeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECC
Q 024224           50 DKAPAVDKDAFVAPSASIIG----DVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD  124 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (270)
                      .....+|++++|++++.|..    ++.||++|.|++++.|.+.. ..+.||++|.|+.++.|.+          ++.||+
T Consensus        18 ~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g----------~~~Ig~   87 (167)
T cd00710          18 IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG----------PAYIGD   87 (167)
T ss_pred             EeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC----------CEEECC
Confidence            34567888999999998876    48999999999999997432 3689999999999999974          799999


Q ss_pred             CcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE
Q 024224          125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV  180 (270)
Q Consensus       125 ~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i  180 (270)
                      +|+|+.++.+..++||++|+||++|.|. ++.|++++++++++++.++  .+.+.+
T Consensus        88 ~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~--~~~~~~  140 (167)
T cd00710          88 NCFIGFRSVVFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQ--TQADAL  140 (167)
T ss_pred             CCEECCCCEEECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCC--Cccccc
Confidence            9999999999999999999999999995 6999999999999999988  665543

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.66  E-value=2.3e-15  Score=122.71  Aligned_cols=105  Identities=23%  Similarity=0.376  Sum_probs=84.2

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      ....|++++.|++++.|.+++.||++|.|++++.|.    +..||+++.|++++.+.           +++|++++.|++
T Consensus        34 ~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~----~siig~~~~I~~~~~i~-----------~siIg~~~~I~~   98 (163)
T cd05636          34 GPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK----NSIIMDGTKVPHLNYVG-----------DSVLGENVNLGA   98 (163)
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe----eeEecCCCEeccCCEEe-----------cCEECCCCEECC
Confidence            345566666666666666677777777777777775    25778888888877775           678999999999


Q ss_pred             CcEEe-------------------------ceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224          131 SAVLH-------------------------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR  170 (270)
Q Consensus       131 ~~~i~-------------------------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~  170 (270)
                      ++.+.                         ++.||++++||.++.|.+++.||++++|++|++|.
T Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV~  163 (163)
T cd05636          99 GTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR  163 (163)
T ss_pred             CcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEeC
Confidence            98773                         48999999999999999999999999999999873

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.66  E-value=3.1e-16  Score=121.89  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=135.1

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC---CCCCccCeEECCCcE
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN---LSGKVLPTTIGDNVT  127 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~---~~~~~~~~~Ig~~v~  127 (270)
                      ..++|.+++.+.--+.|.|+++|+++|.++|.+++.++.++++||+||.|.+.++|...-.+   ++..+.+..||.+..
T Consensus         7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv   86 (190)
T KOG4042|consen    7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV   86 (190)
T ss_pred             ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence            34678888888888889999999999999999999999999999999999999999763322   334456899999999


Q ss_pred             ECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCce--eccCC---CHHHHHHHHH
Q 024224          128 VGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK--FLRKL---TDEEIAFISQ  202 (270)
Q Consensus       128 I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~--~i~~~---~~~~~~~~~~  202 (270)
                      +.-+|......+||+.+|+..+.+.+||.+-++|+|||+..|.....+|+++++.|.-..  ..++.   ...++..|++
T Consensus        87 FeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~~~~~~qtlQidFLrK  166 (190)
T KOG4042|consen   87 FEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTKTPNMTQTLQIDFLRK  166 (190)
T ss_pred             EEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccceecCCCCCccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999985432  22221   1345667777


Q ss_pred             HHHHHHHHHH
Q 024224          203 SATNYSNLAQ  212 (270)
Q Consensus       203 ~~~~~~~l~~  212 (270)
                      ....|..|.+
T Consensus       167 iLPnYHHL~k  176 (190)
T KOG4042|consen  167 ILPNYHHLYK  176 (190)
T ss_pred             Hccchhhhhc
Confidence            7777776654

>PRK10191 putative acyl transferase; Provisional

Probab=99.64  E-value=2.4e-15  Score=119.99  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=49.4

Q ss_pred             ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      .+.||++|+||+++.+.+++.||++++|+++++|.++  +|+++++.|.||++.
T Consensus        92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d--v~~~~~v~G~pA~~~  143 (146)
T PRK10191         92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS--VPDNALVVGEKARVK  143 (146)
T ss_pred             CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc--cCCCcEEEccCcEEE
Confidence            3689999999999999999999999999999999998  999999999999864

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.64  E-value=2.2e-15  Score=118.70  Aligned_cols=100  Identities=12%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEEC----CCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ----DNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~----~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      ++|.|.+.+...+.||+++.|.+++++..   ++.||++|.|.    .+++|.          |++.||++|.|.  +.+
T Consensus         2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~---~a~IG~~~iIn~~ig~~a~Ig----------hd~~IG~~~~I~--~~l   66 (147)
T cd04649           2 VRIADADRVRLGAYLAEGTTVMHEGFVNF---NAGTLGNCMVEGRISSGVIVG----------KGSDVGGGASIM--GTL   66 (147)
T ss_pred             eEecCCCEECCCCEECCCcEECCCCEEcc---CCEECCCeEECCcccCCEEEC----------CCCEECCCCEEE--EEC
Confidence            45666777777777888888888888774   35777777776    555553          466666666666  333


Q ss_pred             -e----ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224          135 -H----GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI  175 (270)
Q Consensus       135 -~----~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I  175 (270)
                       .    ++.||++||||++|+|  ++.||++|+||+|++|.+++.|
T Consensus        67 ~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i  110 (147)
T cd04649          67 SGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV  110 (147)
T ss_pred             CCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence             2    2899999999999999  7999999999999999998654

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.64  E-value=3.5e-15  Score=140.53  Aligned_cols=69  Identities=22%  Similarity=0.441  Sum_probs=59.2

Q ss_pred             CeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          119 PTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      +++||+++.|++++++        +++.||+++++|.++.|.++++||++++|+++++|.++  +|+++++.|......
T Consensus       373 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~--~~~~~~~~~~~~~~~  449 (456)
T PRK14356        373 DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKD--VPDGSLAIARGRQKN  449 (456)
T ss_pred             CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEecc--CCCCcEEEEecceee
Confidence            4677777888877654        34899999999999999999999999999999999998  999999998654433

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.64  E-value=2.8e-15  Score=121.25  Aligned_cols=101  Identities=28%  Similarity=0.498  Sum_probs=89.8

Q ss_pred             CceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           52 APAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      ++.|++++.|+|++++.+   .+.||++|.|.++|+|.++. .+++||++|.||+++.|+           .|+||++|.
T Consensus        29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH-----------Gc~Ig~~~l   97 (176)
T COG0663          29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH-----------GCTIGDNVL   97 (176)
T ss_pred             eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE-----------EeEECCCcE
Confidence            468899999999999987   49999999999999999754 579999999999999997           699999999


Q ss_pred             ECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224          128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       128 I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ||.++++ +++.||++|+||+||.|.++-.++++.++
T Consensus        98 IGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~  134 (176)
T COG0663          98 IGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLV  134 (176)
T ss_pred             EecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence            9999965 55999999999999999998888887765

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.62  E-value=1.1e-14  Score=138.03  Aligned_cols=132  Identities=22%  Similarity=0.354  Sum_probs=90.9

Q ss_pred             CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC-----------C--CceEECCCCEECCCCEEEcCCC-----
Q 024224           50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD-----------V--NSISVGSGTNIQDNSLVHVAKS-----  111 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-----------~--~~v~IG~~~~I~~~~~I~~~~~-----  111 (270)
                      .....||+++.|++++.|.+++.||++|.|+++|.|...           .  .++.||++|.|++++.+.....     
T Consensus       268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~  347 (481)
T PRK14358        268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGV  347 (481)
T ss_pred             cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCC
Confidence            455567788888888888777777777777777665311           0  0123333333333333321110     


Q ss_pred             --------------CCC-----CCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          112 --------------NLS-----GKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       112 --------------~~~-----~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                                    ...     ..-++++||++|.||+++++.        ++.||++|+||++|+|.++++||++++|+
T Consensus       348 ~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~  427 (481)
T PRK14358        348 HIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA  427 (481)
T ss_pred             EECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence                          000     012468888888888888774        47999999999999999999999999999


Q ss_pred             CCCeecCCCccCCCcEEee
Q 024224          165 AGSLVRQNTRIPSGEVWGG  183 (270)
Q Consensus       165 agsvV~~~~~I~~~~iv~G  183 (270)
                      ++|+|.++  +|+++++.+
T Consensus       428 ~gs~v~~~--v~~~~~~~~  444 (481)
T PRK14358        428 AGSAVHDD--VPEGAMAVA  444 (481)
T ss_pred             CCCEEecc--cCCCCEEEe
Confidence            99999998  999998885

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.60  E-value=5.8e-15  Score=126.00  Aligned_cols=113  Identities=19%  Similarity=0.342  Sum_probs=93.0

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      -++++|.|.+.+.-+++||+|+++++.+.|.   -+..+++.|.|.-++++.+          ..+||++|+||.|+.|.
T Consensus       106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVN---igA~~~~gtMVd~~as~G~----------~a~VGkn~higgGa~I~  172 (271)
T COG2171         106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVN---IGAGTGEGTMVDGRASVGS----------CAQVGKNSHIGGGASIG  172 (271)
T ss_pred             cCceeecCccEEeeccEECCCcEEcccceEE---ECcccCcceEEeeeeeeec----------cEEECCCcccCCcceEe
Confidence            3458999999999999999999999988876   2346666677766666643          68899999999999884


Q ss_pred             ---------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee
Q 024224          136 ---------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG  183 (270)
Q Consensus       136 ---------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G  183 (270)
                               +++|||||+||+||.+..|+.+|++|+|++|++|+++  .|.+....|
T Consensus       173 GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~--tki~~~~~g  227 (271)
T COG2171         173 GVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQD--TKIYDRVAG  227 (271)
T ss_pred             EEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCC--cceEEeecc
Confidence                     3899999999999999999999999999999999999  444444444

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.60  E-value=3.1e-14  Score=115.94  Aligned_cols=110  Identities=22%  Similarity=0.370  Sum_probs=90.7

Q ss_pred             CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC---------CceEECCCCEECCCCEEEcCCCCCCCCccC
Q 024224           52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV---------NSISVGSGTNIQDNSLVHVAKSNLSGKVLP  119 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~---------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~  119 (270)
                      ...+++++.|+|++.|.++   +.||++|.|+++++|.+..         .++.||++|.|++++++.           .
T Consensus        21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~-----------~   89 (161)
T cd03359          21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN-----------A   89 (161)
T ss_pred             CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE-----------e
Confidence            6689999999999999876   7999999999999998532         468999999999999997           5


Q ss_pred             eEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECC-CCeecCC
Q 024224          120 TTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAA-GSLVRQN  172 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIga-gsvV~~~  172 (270)
                      +.||+++.|++++.+. ++.|+++++|++++.|.+++.|++++++++ .+.+.++
T Consensus        90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~  144 (161)
T cd03359          90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGE  144 (161)
T ss_pred             eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEe
Confidence            8899999999988774 477888888888887777777777777754 5555554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.60  E-value=1.8e-14  Score=108.10  Aligned_cols=99  Identities=21%  Similarity=0.343  Sum_probs=73.7

Q ss_pred             eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccE
Q 024224           71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGAT  150 (270)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~  150 (270)
                      +.|++++.|++++.|.. ...+.||+++.|+++|.|..          .+.|++++.+   ..+.++.||++|+|+.++.
T Consensus         3 ~~i~~~~~ig~~~~i~~-~~~~~ig~~~~Ig~~~~i~~----------~~~i~~~~~~---~~~~~~~Ig~~~~Ig~~~~   68 (101)
T cd03354           3 IDIHPGAKIGPGLFIDH-GTGIVIGETAVIGDNCTIYQ----------GVTLGGKGKG---GGKRHPTIGDNVVIGAGAK   68 (101)
T ss_pred             eEeCCCCEECCCEEECC-CCeEEECCCCEECCCCEEcC----------CCEECCCccC---CcCCCCEECCCcEEcCCCE
Confidence            44555555555555542 13456777777777777642          3344444332   1357799999999999999


Q ss_pred             ECCCcEECCCcEECCCCeecCCCccCCCcEEeecC
Q 024224          151 LLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP  185 (270)
Q Consensus       151 I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~p  185 (270)
                      +.++++||++++|+++++|.++  +|+++++.|+|
T Consensus        69 i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~G~P  101 (101)
T cd03354          69 ILGNITIGDNVKIGANAVVTKD--VPANSTVVGVP  101 (101)
T ss_pred             EECcCEECCCCEECCCCEECcc--cCCCCEEEeCC
Confidence            9999999999999999999998  99999999998

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.58  E-value=1.3e-14  Score=126.91  Aligned_cols=105  Identities=20%  Similarity=0.312  Sum_probs=84.7

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCE---ECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTN---IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~---I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      +..+++|++.+.|..+++||++|.|+++++|..+  --++|+++.   |..+++|.          |++.||++|.|  +
T Consensus       175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~n--AgtiG~~~IEgrInsGavIG----------hds~IG~gasI--g  240 (341)
T TIGR03536       175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFN--AGTEGPSMVEGRISAGVMVG----------KGSDLGGGCST--M  240 (341)
T ss_pred             ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcC--cEecCCceEecccccCCEEC----------CCCEECCCCEE--e
Confidence            5667788888888888888888888888888632  123787777   77777774          57888888888  4


Q ss_pred             cEE-ec----eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224          132 AVL-HG----CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI  175 (270)
Q Consensus       132 ~~i-~~----~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I  175 (270)
                      +++ .+    +.||++|+||+||.|  ++.||++|+|++|++|..++.|
T Consensus       241 ~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       241 GTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             EEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence            444 34    899999999999999  8999999999999999998765

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.57  E-value=3.3e-14  Score=123.81  Aligned_cols=103  Identities=16%  Similarity=0.332  Sum_probs=87.9

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCce-EECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSI-SVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v-~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      +.++++|.+.+.+.-+++||+++.|+++++|..   ++ +||++ .|  ++.|          .|+++||++|.|++++.
T Consensus       150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~---nAgtIG~~-iI--~g~I----------~HdvvIGd~~~IgpGvs  213 (319)
T TIGR03535       150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNF---NAGTLGAS-MV--EGRI----------SAGVVVGDGSDIGGGAS  213 (319)
T ss_pred             CCCccEECCCceeeeccEECCCCEEcCCCEEcc---CceEecCc-eE--EEEE----------ccCCEECCCCEECCCce
Confidence            456888888888888999999999999999874   34 57775 55  3555          46999999999999999


Q ss_pred             Eec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224          134 LHG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI  175 (270)
Q Consensus       134 i~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I  175 (270)
                      |.+         +.||++|+||+||.|  ++.||++|+||+|++|.+++.|
T Consensus       214 I~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v  262 (319)
T TIGR03535       214 IMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV  262 (319)
T ss_pred             ecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence            544         899999999999999  8999999999999999998655

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=1.5e-14  Score=135.35  Aligned_cols=133  Identities=20%  Similarity=0.290  Sum_probs=103.9

Q ss_pred             HHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCE
Q 024224           20 QALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTN   99 (270)
Q Consensus        20 ~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~   99 (270)
                      +.+.||.+.+.....+...     ..+.+-..+..-++.+.+.+.+.++.++.||.++.|+.++.|.    +.+||.+|.
T Consensus       288 DiI~RW~YP~Vpd~~~~~~-----q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~----NSVIG~~c~  358 (673)
T KOG1461|consen  288 DIIQRWTYPLVPDINFSGN-----QTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS----NSVIGANCR  358 (673)
T ss_pred             HHHHhhcccccccccCCCC-----ceeeecccccccCccceehhhccccceEEecccccccCCCeee----cceecCCCE
Confidence            4456777777554433321     1122222333446777888888888999999999999999998    469999999


Q ss_pred             ECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224          100 IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       100 I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~  172 (270)
                      ||++|.|.           ++.|+++|+||.||.|+.+.|++++.|++++.+.+|+++|.+++++.+-++.++
T Consensus       359 IgsN~~I~-----------~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  359 IGSNVRIK-----------NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             ecCceEEe-----------eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence            99999998           799999999999999999999999999999999888887777777766666555

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.56  E-value=4.3e-14  Score=132.08  Aligned_cols=93  Identities=16%  Similarity=0.330  Sum_probs=71.4

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc----------EECcCcEEeceEECCCcEECCccEECC-------C
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV----------TVGHSAVLHGCTVEDEAFVGMGATLLD-------G  154 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v----------~I~~~~~i~~~~Ig~~~~Ig~~a~I~~-------g  154 (270)
                      .+||++|.|++++.|.           ++.||++|          .|++++.+++|+||++|.||+++++..       +
T Consensus       299 ~~ig~~~~i~~~~~i~-----------~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~  367 (430)
T PRK14359        299 SDVGPLAHIRPKSEIK-----------NTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHK  367 (430)
T ss_pred             CEECCCCEECCCcEEe-----------ccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcC
Confidence            4566666666666664           34444444          677777788899999999999998864       3


Q ss_pred             cEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          155 VVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       155 v~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++||++|+||+++.|.++++|++++++++ -+.+.+++++..
T Consensus       368 ~~ig~~~~ig~~~~i~~~~~ig~~~~i~~-g~~v~~~v~~~~  408 (430)
T PRK14359        368 TIIGKNVFIGSDTQLVAPVNIEDNVLIAA-GSTVTKDVPKGS  408 (430)
T ss_pred             CEECCCeEEcCCCEEeCCcEECCCCEECC-CCEEccccCCCc
Confidence            89999999999999999999999987764 466677766543

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.56  E-value=3.7e-14  Score=133.33  Aligned_cols=137  Identities=15%  Similarity=0.322  Sum_probs=98.2

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc----CC--------CceEECCCCEECCCCEEEcCCCCCCCC
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG----DV--------NSISVGSGTNIQDNSLVHVAKSNLSGK  116 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~--------~~v~IG~~~~I~~~~~I~~~~~~~~~~  116 (270)
                      ++..+.+++++.|++++.|.+++.||++|.|++++.|..    +.        .+..||++|.|+++|.|..        
T Consensus       259 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~--------  330 (450)
T PRK14360        259 ISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRP--------  330 (450)
T ss_pred             EeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECC--------
Confidence            344566788888888888888888999999988888751    10        0234556666666666642        


Q ss_pred             ccCeEECCCcEECcCcE-----------------EeceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCC
Q 024224          117 VLPTTIGDNVTVGHSAV-----------------LHGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       117 ~~~~~Ig~~v~I~~~~~-----------------i~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~  172 (270)
                        ++.||++|.|+.++.                 +.++.||++|.||+++++..       +++||++|+||++++|..+
T Consensus       331 --~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~  408 (450)
T PRK14360        331 --EAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP  408 (450)
T ss_pred             --CCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC
Confidence              344555555554443                 34467888999999988743       7899999999999999999


Q ss_pred             CccCCCcEEeecCceeccCCCHHH
Q 024224          173 TRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       173 ~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++|+++++++. .+.+.+++++..
T Consensus       409 ~~ig~~~~v~~-~~~v~~~~~~~~  431 (450)
T PRK14360        409 ITLGEDVTVAA-GSTITKDVPDNS  431 (450)
T ss_pred             cEECCCCEECC-CCEECccCCCCC
Confidence            99999987764 677777777643

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.56  E-value=1.5e-13  Score=110.99  Aligned_cols=112  Identities=23%  Similarity=0.342  Sum_probs=97.1

Q ss_pred             CCCceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           50 DKAPAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      ...+.||+++.|++++.|.+.   +.||++|.|+++|.|.++. .++.||+++.|++++.+.           +++||++
T Consensus        16 ~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~~   84 (154)
T cd04650          16 IGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----------GAKVGNY   84 (154)
T ss_pred             EeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----------CcEECCC
Confidence            345678999999999998876   8999999999999998532 358999999999999996           6899999


Q ss_pred             cEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcE-ECCCCeecCC
Q 024224          126 VTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGM-VAAGSLVRQN  172 (270)
Q Consensus       126 v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v-IgagsvV~~~  172 (270)
                      |+|+.++.+. ++.||+++++++++.+.++..++++++ .|..+.+.++
T Consensus        85 ~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~  133 (154)
T cd04650          85 VIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRK  133 (154)
T ss_pred             CEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEecc
Confidence            9999999875 599999999999999999999999999 4666777665

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.54  E-value=1.2e-13  Score=119.57  Aligned_cols=115  Identities=21%  Similarity=0.290  Sum_probs=76.6

Q ss_pred             ceeCCCCEECCCcEEec-----CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           53 PAVDKDAFVAPSASIIG-----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~-----~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      +.+.++++|++++.|.+     ++.||++|.|..++.|.+   .+.||++|.|+.++.|.+...  +...++++||++|+
T Consensus       107 a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~---~v~IG~nv~I~~g~~IgG~~e--p~~~~~ViIgDnv~  181 (269)
T TIGR00965       107 AAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGS---CAQIGKNVHLSGGVGIGGVLE--PLQANPTIIEDNCF  181 (269)
T ss_pred             cEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECC---CCEECCCCEEcCCcccCCCcc--cCCCCCeEECCCCE
Confidence            34444455555554443     345666666666666552   356666666666665543211  11247899999999


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCc-------EECCCCeecCC
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHG-------MVAAGSLVRQN  172 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~-------vIgagsvV~~~  172 (270)
                      ||.+|.|. +++||++++||++|+|.+++.|.+..       .|.++++|.++
T Consensus       182 IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g  234 (269)
T TIGR00965       182 IGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSG  234 (269)
T ss_pred             ECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecC
Confidence            99999774 69999999999999999999888754       24556666544

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.52  E-value=8.2e-14  Score=119.69  Aligned_cols=109  Identities=22%  Similarity=0.375  Sum_probs=92.8

Q ss_pred             ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEE
Q 024224           73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATL  151 (270)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I  151 (270)
                      ++.++.|++++.|.+   ++.||++|.|+.++.|..          ++.||++|.|++++.+. +++||++|+||.++.|
T Consensus        83 vg~~~~I~~~a~I~g---~v~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I  149 (231)
T TIGR03532        83 KNINARIEPGAIIRD---QVIIGDNAVIMMGAVINI----------GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVL  149 (231)
T ss_pred             cccccEECCCCEEeC---CeEECCCCEEecCcccCC----------CeEECCCCEEccccccCCCcEECCCcEEcCCcEE
Confidence            678888888888873   589999999999999964          78999999999999996 6999999999999999


Q ss_pred             CC--------CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          152 LD--------GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       152 ~~--------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      .+        ++.||++|+||++++|.+++.|++++++. ..+.+.+++++.
T Consensus       150 ~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Ig-agsvV~~di~~~  200 (231)
T TIGR03532       150 AGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVA-AGAIVTEDVPPN  200 (231)
T ss_pred             ccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEEC-CCCEEccccCCC
Confidence            74        68999999999999999998999888766 356666665544

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.52  E-value=3.7e-13  Score=108.87  Aligned_cols=110  Identities=24%  Similarity=0.437  Sum_probs=85.8

Q ss_pred             CCceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           51 KAPAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ..+.|++++.|++++.|.+   .+.||++|.|+++|+|.+.. .++.||++|.|++++.+.           .+.||++|
T Consensus        17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~-----------~~~Ig~~~   85 (155)
T cd04745          17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILH-----------GCTIGRNA   85 (155)
T ss_pred             ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEE-----------CCEECCCC
Confidence            3567888888888888876   58899999999999885321 357888888888888886           68899999


Q ss_pred             EECcCcEEec-eEECCCcEECCccEECCCcEECCCcEE-CCCCeecC
Q 024224          127 TVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQ  171 (270)
Q Consensus       127 ~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~  171 (270)
                      +|+.++.+.+ +.||++++|++++.|.++..|++++++ |.-+.+.+
T Consensus        86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~  132 (155)
T cd04745          86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIR  132 (155)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEec
Confidence            9999887755 888899888888888888888888776 33344433

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.52  E-value=3.6e-13  Score=112.69  Aligned_cols=144  Identities=15%  Similarity=0.239  Sum_probs=90.3

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeE
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTT  121 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~  121 (270)
                      ....+++.+.|++++.|.+.+.|+.++.|+++|.|....  ....||++|.|++++.|....-.       +......+.
T Consensus         8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~   87 (193)
T cd03353           8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTV   87 (193)
T ss_pred             CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccE
Confidence            345788888888888888888888888888888887433  23467777777776666421100       000011233


Q ss_pred             ECCCcEECcCcEE-----------------eceEECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccCC
Q 024224          122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       122 Ig~~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      |++++.|+.++.+                 .++.||++|.||+++.+.       .++.||++++|++++.+.++++|++
T Consensus        88 Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~  167 (193)
T cd03353          88 LGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGD  167 (193)
T ss_pred             ECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECC
Confidence            3333333332222                 224555666666665553       2577899999999999988888888


Q ss_pred             CcEEeecCceeccCCCHH
Q 024224          178 GEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~  195 (270)
                      ++++.. -+.+.+++++.
T Consensus       168 ~~~i~~-gs~V~~~v~~~  184 (193)
T cd03353         168 GATIAA-GSTITKDVPPG  184 (193)
T ss_pred             CcEECC-CCEEccccCCC
Confidence            887764 45566666653

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.51  E-value=2e-13  Score=114.35  Aligned_cols=100  Identities=21%  Similarity=0.318  Sum_probs=83.1

Q ss_pred             EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-----eEECCCcEEC
Q 024224           72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-----CTVEDEAFVG  146 (270)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-----~~Ig~~~~Ig  146 (270)
                      .|+++++|++++.|.+   ++.||++|.|+++|+|.+..       +.++||++|.|+++|+|+.     ++|+++++||
T Consensus        12 ~i~~~a~I~~~a~I~g---~V~IG~~~~I~~~avIrgd~-------~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig   81 (196)
T PRK13627         12 VVHPTAFVHPSAVLIG---DVIVGAGVYIGPLASLRGDY-------GRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIG   81 (196)
T ss_pred             ccCCCeEECCCCEEEC---ceEECCCCEECCCCEEecCC-------ccEEECCCCEECCCCEEeCCCCCCCEECCCCEEC
Confidence            4678888889998884   47999999999999998633       2588999999999999865     7899999999


Q ss_pred             CccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          147 MGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       147 ~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                      .++.+. +++||++|+||++++|..++.|++++++.
T Consensus        82 ~~a~i~-g~vIG~~v~IG~ga~V~~g~~IG~~s~Vg  116 (196)
T PRK13627         82 HGAILH-GCVIGRDALVGMNSVIMDGAVIGEESIVA  116 (196)
T ss_pred             CCcEEe-eEEECCCCEECcCCccCCCcEECCCCEEc
Confidence            998774 58888888888888888877777777655

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.51  E-value=4.6e-13  Score=108.03  Aligned_cols=110  Identities=24%  Similarity=0.397  Sum_probs=85.6

Q ss_pred             CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      ...+++++.|++++.|.++   +.||++|.|+++++|.+.. .++.||++|.|+.++++.           .+.||++++
T Consensus        17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~~~~   85 (153)
T cd04645          17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLH-----------GCTIGDNCL   85 (153)
T ss_pred             eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEe-----------eeEECCCCE
Confidence            3567888888888877754   6888888888888887432 147888888888888886           478888888


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecCC
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQN  172 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~  172 (270)
                      |+.++.+. +++|+++|+|++++.|.+++.+++++++ +..+.+.++
T Consensus        86 Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~  132 (153)
T cd04645          86 IGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRE  132 (153)
T ss_pred             ECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhccc
Confidence            88888776 5888888888888888888888888877 566565555

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.50  E-value=6.4e-14  Score=131.58  Aligned_cols=151  Identities=15%  Similarity=0.224  Sum_probs=113.8

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      .+++++.|++++.|.+++.||+++.|+++|.|.+..  .++.||++|.|++++.|..          ++.||++|.|+++
T Consensus       264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~----------~~~ig~~~~Ig~~  333 (446)
T PRK14353        264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRP----------GAELGEGAKVGNF  333 (446)
T ss_pred             EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEec----------cceecCCeEEcCc
Confidence            678889999999999999999999999999997443  2578899999998888864          3445555555544


Q ss_pred             cE-----------------EeceEECCCcEECCccEE-------CCCcEECCCcEECCCCeecCCCccCCCcEEeecCce
Q 024224          132 AV-----------------LHGCTVEDEAFVGMGATL-------LDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK  187 (270)
Q Consensus       132 ~~-----------------i~~~~Ig~~~~Ig~~a~I-------~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~  187 (270)
                      +.                 +.++.||++|.||+++++       ..++.||++|+||++++|.++++|++++++ |..+.
T Consensus       334 ~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i-g~~s~  412 (446)
T PRK14353        334 VEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYI-ASGSV  412 (446)
T ss_pred             eEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEE-CCCCE
Confidence            43                 345678888899988877       347999999999999999999999999988 45788


Q ss_pred             eccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024224          188 FLRKLTDEEIAFISQSATNYSNLAQVHA  215 (270)
Q Consensus       188 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (270)
                      +.+++++.....-+.....+..+..+|+
T Consensus       413 v~~~v~~~~~~~g~~~~~~~~~~~~~~~  440 (446)
T PRK14353        413 ITEDVPDDALALGRARQETKPGWAKKLR  440 (446)
T ss_pred             ECccCCCCCEEEecCceEecccccccch
Confidence            8888887655443333334444444443

>PLN02472 uncharacterized protein

Probab=99.50  E-value=4.6e-13  Score=115.75  Aligned_cols=101  Identities=25%  Similarity=0.306  Sum_probs=76.3

Q ss_pred             CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccCeE
Q 024224           52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTT  121 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~  121 (270)
                      .+.|++++.|++++++.++   +.||++|.|+++|+|....       ..+.||++|.|+++|+|.           +++
T Consensus        77 ~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~-----------~~~  145 (246)
T PLN02472         77 QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR-----------SCT  145 (246)
T ss_pred             CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC-----------CeE
Confidence            4667777788877777765   8888899999998886432       357888888888888885           688


Q ss_pred             ECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224          122 IGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       122 Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ||++|.||.+++| .+++||++|.|++++.|.++..|+++.++
T Consensus       146 Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~  188 (246)
T PLN02472        146 IEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELW  188 (246)
T ss_pred             EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence            8899888888755 34777777777777777666666666555

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.48  E-value=2.2e-13  Score=133.94  Aligned_cols=105  Identities=21%  Similarity=0.320  Sum_probs=85.8

Q ss_pred             cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCc
Q 024224           69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMG  148 (270)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~  148 (270)
                      -+++||+|+.|++ ..+. ..+.++||+||.|+++|.|.+..           +.++     ...++.++||++|+||++
T Consensus       111 lGa~IG~~v~I~~-~~~~-~~~li~IG~~~~I~~~v~l~~~~-----------~~~~-----~l~~g~i~IG~~~~IG~~  172 (695)
T TIGR02353       111 LGAKIGKGVDIGS-LPPV-CTDLLTIGAGTIVRKEVMLLGYR-----------AERG-----RLHTGPVTLGRDAFIGTR  172 (695)
T ss_pred             cCCEECCCCEEEe-eecc-cCCceEECCCCEECCCCEEEccc-----------CCCC-----ceeecCcEECCCcEECCC
Confidence            3678888888877 3332 34679999999999999997421           1111     123456899999999999


Q ss_pred             cEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          149 ATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       149 a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      |+|.+|++||++|+|+++|.|.++..||+++++.|+||+.+..
T Consensus       173 s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~  215 (695)
T TIGR02353       173 STLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA  215 (695)
T ss_pred             CEEcCCCEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence            9999999999999999999999977799999999999999865

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.48  E-value=6.1e-13  Score=125.54  Aligned_cols=58  Identities=10%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             eEECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          137 CTVEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      +.||++|.||+++++.       .++.||++|+||+++.|.++++|+++++++. -+.+.+++++.
T Consensus       373 ~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a-~s~v~~~v~~~  437 (459)
T PRK14355        373 ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAA-GTTVTKDVPPD  437 (459)
T ss_pred             CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECC-CCEEcccCCCC
Confidence            3555666666666542       2467888888888888888888888887764 35555565543

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.47  E-value=7.3e-13  Score=110.66  Aligned_cols=101  Identities=20%  Similarity=0.285  Sum_probs=84.8

Q ss_pred             eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-----ceEECCCcEE
Q 024224           71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-----GCTVEDEAFV  145 (270)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-----~~~Ig~~~~I  145 (270)
                      -.|+++++|++++.|.+   +++||++|.|+++|+|.+..       ++++||++|.|+++|+|+     +++|++++.|
T Consensus         9 p~i~~~~~I~~~a~I~G---~V~IG~~~~I~~~a~I~gd~-------g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~I   78 (192)
T TIGR02287         9 PVVHPEAYVHPTAVLIG---DVILGKRCYVGPLASLRGDF-------GRIVLKEGANIQDNCVMHGFPGQDTVVEENGHV   78 (192)
T ss_pred             CcCCCCcEECCCCEEEe---eEEECCCCEECCCcEEEccC-------CceEECCCCEECCCeEEeccCCCCCeECCCCEE
Confidence            34789999999999984   58999999999999998632       378999999999999994     4899999999


Q ss_pred             CCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          146 GMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       146 g~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                      +.++.|. +++|+++|.||+++.|..++.|++++++.
T Consensus        79 g~~a~I~-~siIg~~~~IG~ga~I~~g~~IG~~s~Vg  114 (192)
T TIGR02287        79 GHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVA  114 (192)
T ss_pred             CCCCEEc-CCEECCCCEECCCcccCCCeEECCCCEEc
Confidence            9998875 58888888888888887777777776665

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.46  E-value=1.4e-12  Score=113.76  Aligned_cols=116  Identities=25%  Similarity=0.328  Sum_probs=76.8

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC----CCCCccCeEECCCcEE
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN----LSGKVLPTTIGDNVTV  128 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~----~~~~~~~~~Ig~~v~I  128 (270)
                      +.++.+++|+|++.|.+ ..++.+++|+++++|.+   .+.||++|.||++|+|..+..-    .....++++||++|+|
T Consensus       110 a~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~---~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~I  185 (272)
T PRK11830        110 AVVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDT---WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFI  185 (272)
T ss_pred             eEECCCCEECCCcEEEE-EEECCCCEECCCcEEcc---ccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEE
Confidence            34556666666666653 44445555556666552   2455555555555555443210    0112347999999999


Q ss_pred             CcCcEE-eceEECCCcEECCccEECCCcEECCCc-------EECCCCeecCC
Q 024224          129 GHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHG-------MVAAGSLVRQN  172 (270)
Q Consensus       129 ~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~-------vIgagsvV~~~  172 (270)
                      |.++++ .++.||++|.||+++.|.+++.|++.+       .|-++++|.++
T Consensus       186 Ga~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g  237 (272)
T PRK11830        186 GARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPG  237 (272)
T ss_pred             CCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecC
Confidence            999987 679999999999999999999999755       35677777644

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.46  E-value=6.9e-13  Score=124.60  Aligned_cols=142  Identities=10%  Similarity=0.161  Sum_probs=94.2

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEECC
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTIGD  124 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~Ig~  124 (270)
                      .+++.+.|++++.|.+++.|+.++.|+++|.|....  .++.||++|.|++++.|....-.       +......++||+
T Consensus       257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~  336 (451)
T TIGR01173       257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGA  336 (451)
T ss_pred             EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECC
Confidence            466777777777777777777777777777776432  24667777777766666542211       000112344444


Q ss_pred             CcEECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcE
Q 024224          125 NVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEV  180 (270)
Q Consensus       125 ~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~i  180 (270)
                      +|.|++++.+                 +++.||++|+||+++++..       ++.||++++||++++|.++++|+++++
T Consensus       337 ~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~  416 (451)
T TIGR01173       337 GVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGAT  416 (451)
T ss_pred             CcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCE
Confidence            4444444322                 2367777778888777754       589999999999999999999999988


Q ss_pred             EeecCceeccCCCHHH
Q 024224          181 WGGNPAKFLRKLTDEE  196 (270)
Q Consensus       181 v~G~pa~~i~~~~~~~  196 (270)
                      +++ -+.+.+++++..
T Consensus       417 i~~-g~~v~~~v~~~~  431 (451)
T TIGR01173       417 IAA-GSTVTKDVPEGA  431 (451)
T ss_pred             Ecc-CCEECccCCCCc
Confidence            775 467777776643

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.46  E-value=6.9e-13  Score=124.67  Aligned_cols=138  Identities=15%  Similarity=0.160  Sum_probs=85.3

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcC----------CC--CCCCCccCeE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA----------KS--NLSGKVLPTT  121 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~----------~~--~~~~~~~~~~  121 (270)
                      .+++++.|++++.|.+++.|+.++.|+++|+|...   +.|. +|.|+++|.|...          ..  ++......+.
T Consensus       251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~---~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~  326 (448)
T PRK14357        251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPM---TRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTV  326 (448)
T ss_pred             EEccceEECCCcEEcCCcEEEeeeEECCCcEECCC---ceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccc
Confidence            56666666666666666677667777777776632   2221 1333333333210          00  0000112344


Q ss_pred             ECCCcEECcCcEE-----------------eceEECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccCC
Q 024224          122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       122 Ig~~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      ||++|.|++++.+                 .+++||++|+||+++++.       .+++||++++||+++.|.++++|++
T Consensus       327 ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~  406 (448)
T PRK14357        327 LKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGK  406 (448)
T ss_pred             ccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECC
Confidence            5555555544332                 346788888888888764       3589999999999999999999999


Q ss_pred             CcEEeecCceeccCCCHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++++++ -+.+.+++++..
T Consensus       407 ~~~i~a-g~~v~~~v~~~~  424 (448)
T PRK14357        407 GALIGA-GSVITEDVPPYS  424 (448)
T ss_pred             CCEEcC-CCEECCcCCCCc
Confidence            988775 577777776654

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.44  E-value=1.7e-12  Score=123.26  Aligned_cols=63  Identities=6%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             EEeceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          133 VLHGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       133 ~i~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      .++++.||++|+||+++++..       ++.||+++.||.++.+.++++|+++++++. -+.+.+++++..
T Consensus       371 ~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~iga-gs~v~~~v~~~~  440 (482)
T PRK14352        371 YVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGA-GTVIREDVPPGA  440 (482)
T ss_pred             eecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECC-CCEEcCCCCCCc
Confidence            344578889999999988863       489999999999999999999999986653 455666665543

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.44  E-value=1.6e-12  Score=123.44  Aligned_cols=141  Identities=12%  Similarity=0.159  Sum_probs=88.0

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEECCCc
Q 024224           56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTIGDNV  126 (270)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~Ig~~v  126 (270)
                      .+.+.|++++.|.+++.|..++.|+++|.|....  .+.+||++|.|++++.|.+..-.       +......+.||+++
T Consensus       268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~  347 (481)
T PRK14358        268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGV  347 (481)
T ss_pred             cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCC
Confidence            4455555555555555555555555555554321  23445555555555544321100       01112346666666


Q ss_pred             EECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          127 TVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       127 ~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                      .|+.++.+                 .+++||++|.||.++++..       ++.||++++||+++.|.++++|+++++++
T Consensus       348 ~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~  427 (481)
T PRK14358        348 HIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA  427 (481)
T ss_pred             EECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence            66664432                 4588999999999998853       57999999999999999999999999886


Q ss_pred             ecCceeccCCCHHHH
Q 024224          183 GNPAKFLRKLTDEEI  197 (270)
Q Consensus       183 G~pa~~i~~~~~~~~  197 (270)
                      + -+.+.+++++...
T Consensus       428 ~-gs~v~~~v~~~~~  441 (481)
T PRK14358        428 A-GSAVHDDVPEGAM  441 (481)
T ss_pred             C-CCEEecccCCCCE
Confidence            4 4566677766543

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.42  E-value=2.5e-12  Score=106.48  Aligned_cols=61  Identities=30%  Similarity=0.549  Sum_probs=27.9

Q ss_pred             eEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE
Q 024224          120 TTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV  180 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i  180 (270)
                      ++||++|.|++++.|. ++.||++|+|+.++.+.++++||++|+|++++.|.+++.|+++++
T Consensus       115 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~  176 (197)
T cd03360         115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAI  176 (197)
T ss_pred             CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCE
Confidence            3344444444444432 244444444444444444444444444444444444444444443

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.42  E-value=3.3e-12  Score=107.82  Aligned_cols=66  Identities=18%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +++++.|++++.|. ++.||+++.|+++|+|.    .++||++|.|+.++.+.           .+.||++|.|++++.+
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~----~s~IG~~s~I~~~~~i~-----------~~~IG~~~~I~~~v~I   68 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR----EVALGDYSYVMRDCDII-----------YTTIGKFCSIAAMVRI   68 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe----CCEECCCCEECCCcEEe-----------eeEECCCCEECCCCEE
Confidence            56777888888885 57899999999999997    36899999999999997           5889999999999877


Q ss_pred             ec
Q 024224          135 HG  136 (270)
Q Consensus       135 ~~  136 (270)
                      ..
T Consensus        69 ~~   70 (204)
T TIGR03308        69 NA   70 (204)
T ss_pred             CC
Confidence            53

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.39  E-value=6.3e-12  Score=104.99  Aligned_cols=90  Identities=29%  Similarity=0.512  Sum_probs=55.3

Q ss_pred             EECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224           93 SVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus        93 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                      .||++|.|+++++|..          +++||++|.|++++.+. ++.||++++|+.++.+.++++||++|+|+++++|.+
T Consensus       101 ~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~  170 (201)
T TIGR03570       101 SIGEGTVIMAGAVINP----------DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQ  170 (201)
T ss_pred             EECCCCEECCCCEECC----------CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeC
Confidence            4455555555555542          45566666666666554 366777777777777766677777777777777766


Q ss_pred             CCccCCCcEEeecCceeccCCC
Q 024224          172 NTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       172 ~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      ++.|++++++ |.++.+.++++
T Consensus       171 ~~~i~~~~~i-~~~~~v~~~~~  191 (201)
T TIGR03570       171 GVTIGAGAIV-GAGAVVTKDIP  191 (201)
T ss_pred             CCEECCCCEE-CCCCEECCcCC
Confidence            6666666654 33455555444

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.37  E-value=2.7e-12  Score=126.35  Aligned_cols=108  Identities=27%  Similarity=0.430  Sum_probs=85.7

Q ss_pred             ECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEEC
Q 024224           61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVE  140 (270)
Q Consensus        61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig  140 (270)
                      +.+.....-+++||++|.|.....+..  ..++||++|.|+++|.|.++..           .+.+.     .+.+++||
T Consensus       588 ~~~~~lr~lGa~IG~~v~i~~~~~~~~--dlv~IGd~~~I~~~~~i~~h~~-----------~~~~~-----~~~~v~IG  649 (695)
T TIGR02353       588 FLPAILRLLGVKIGRGVYIDGTDLTER--DLVTIGDDSTLNEGSVIQTHLF-----------EDRVM-----KSDTVTIG  649 (695)
T ss_pred             HHHHHHHHCCCEECCCeEECCeeccCC--CCeEECCCCEECCCCEEEeccc-----------ccccc-----ccCCeEEC
Confidence            333444455788888888877665543  3589999999999999974211           11111     34569999


Q ss_pred             CCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCc
Q 024224          141 DEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA  186 (270)
Q Consensus       141 ~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa  186 (270)
                      ++|+||++|+|.++++||++|+|+++|+|.++..+|+++++.|+||
T Consensus       650 ~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       650 DGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence            9999999999999999999999999999999888999999999996

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.37  E-value=7.9e-12  Score=117.81  Aligned_cols=59  Identities=7%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             eEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          137 CTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++||++|.||+++.+..       +++||+++++|+++.|.++++|+++++++. -+.+.+++++..
T Consensus       369 ~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~-~~~v~~~~~~~~  434 (458)
T PRK14354        369 AEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAA-GSTITKDVPEDA  434 (458)
T ss_pred             cccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECC-CCEECCCCCCCC
Confidence            34555566666665532       578899999999999999999999987764 566777777644

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.37  E-value=5.9e-12  Score=99.37  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      .+...+.|++++.|.+.+.+..++.||++|.|..  +|.   ..++||++|.|++++.|......  +...++.||++|+
T Consensus         9 ~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig---~~a~Ighd~~IG~~~~I~~~l~G--~~~~pV~IG~~~~   81 (147)
T cd04649           9 RVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RIS---SGVIVGKGSDVGGGASIMGTLSG--GGNNVISIGKRCL   81 (147)
T ss_pred             EECCCCEECCCcEECCCCEEccCCEECCCeEECC--ccc---CCEEECCCCEECCCCEEEEECCC--CcccCEEECCCCE
Confidence            3456667777777777777777777777777752  222   23567778888888888732111  1234599999999


Q ss_pred             ECcCcEEeceEECCCcEECCccEECCCcEEC
Q 024224          128 VGHSAVLHGCTVEDEAFVGMGATLLDGVVVE  158 (270)
Q Consensus       128 I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig  158 (270)
                      ||.++++ ++.||++|.||++++|.+++.|-
T Consensus        82 IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~  111 (147)
T cd04649          82 LGANSGI-GISLGDNCIVEAGLYVTAGTKVT  111 (147)
T ss_pred             ECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence            9999999 89999999999999999887763

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.36  E-value=7.7e-12  Score=117.94  Aligned_cols=140  Identities=11%  Similarity=0.179  Sum_probs=89.3

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEECCC
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTIGDN  125 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~Ig~~  125 (270)
                      +...+.+++++.|.+++.|+.++.|++++.|....  .++.||++|.|++++.|....-.       .......+.|+++
T Consensus       262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~  341 (456)
T PRK09451        262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG  341 (456)
T ss_pred             ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC
Confidence            34455677777777777777777788888776432  24556666666666666432110       0001122333333


Q ss_pred             cEECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          126 VTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       126 v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                      +.|++++.+                 +++.||++|.||+++++..       +++||++|+||++++|.++++|++++++
T Consensus       342 ~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  421 (456)
T PRK09451        342 AHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI  421 (456)
T ss_pred             ceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence            333333222                 2357888888888887742       4789999999999999999999999887


Q ss_pred             eecCceeccCCCHH
Q 024224          182 GGNPAKFLRKLTDE  195 (270)
Q Consensus       182 ~G~pa~~i~~~~~~  195 (270)
                      ++ -+.+.+++++.
T Consensus       422 ~~-gs~v~~~v~~~  434 (456)
T PRK09451        422 GA-GTTVTRDVAEN  434 (456)
T ss_pred             CC-CCEEccccCCC
Confidence            75 56666776654

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.33  E-value=2.8e-11  Score=90.80  Aligned_cols=84  Identities=18%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      .+.|++++.|.+++.|.+   ++.||++|.|++++.|..          +++||++|.|+.  .+..+.|++++.++.++
T Consensus        11 ~v~ig~~~~I~~~~~i~g---~v~IG~~~~Ig~~~~I~~----------~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~   75 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEG---PVYIGPGSRVKMGARIYG----------NTTIGPTCKIGG--EVEDSIIEGYSNKQHDG   75 (101)
T ss_pred             CEEECCCCEECCCCEEeC---CCEECCCCEECCCCEEeC----------cCEECCCCEECC--EECccEEcCCCEecCcC
Confidence            577777777777777763   467888888888877764          677777777754  45667777777777777


Q ss_pred             EECCCcEECCCcEECCCCee
Q 024224          150 TLLDGVVVERHGMVAAGSLV  169 (270)
Q Consensus       150 ~I~~gv~Ig~~~vIgagsvV  169 (270)
                      .|. +++||+++.|++++..
T Consensus        76 ~lg-~siIg~~v~ig~~~~~   94 (101)
T cd05635          76 FLG-HSYLGSWCNLGAGTNN   94 (101)
T ss_pred             EEe-eeEECCCCEECCCcee
Confidence            764 5777777777776554

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.30  E-value=3.3e-11  Score=85.77  Aligned_cols=77  Identities=27%  Similarity=0.481  Sum_probs=55.8

Q ss_pred             ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEEC
Q 024224           73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (270)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~  152 (270)
                      ||+++.|++++.|.    +..||++|.|++++.|.           ++.|++++.|++++.+.++.|++++.|+.++.+.
T Consensus         2 ig~~~~I~~~~~i~----~s~ig~~~~ig~~~~i~-----------~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~   66 (79)
T cd05787           2 IGRGTSIGEGTTIK----NSVIGRNCKIGKNVVID-----------NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP   66 (79)
T ss_pred             ccCCCEECCCCEEe----ccEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence            56666666666665    24677888888888875           5678888888888877777777777777777776


Q ss_pred             CCcEECCCcEEC
Q 024224          153 DGVVVERHGMVA  164 (270)
Q Consensus       153 ~gv~Ig~~~vIg  164 (270)
                      +++.|++++.||
T Consensus        67 ~~~~v~~~~~ig   78 (79)
T cd05787          67 PGSLISFGVVIG   78 (79)
T ss_pred             CCCEEeCCcEeC
Confidence            666666666665

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.29  E-value=2.3e-11  Score=112.05  Aligned_cols=103  Identities=20%  Similarity=0.396  Sum_probs=75.8

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +..++.+.+.+.|++++.| .++.|+++|.|.+...+..||++|.|+++|.|.           +++|+++|.|++++.+
T Consensus       273 ~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-----------~svi~~~~~i~~~~~i  340 (380)
T PRK05293        273 IYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-----------DSVIMPGAKIGENVVI  340 (380)
T ss_pred             eecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-----------CCEEeCCCEECCCeEE
Confidence            4344445555555555555 356666666665433467899999999999997           6889999999999999


Q ss_pred             eceEECCCcEECCccEECCC----cEECCCcEECCCCee
Q 024224          135 HGCTVEDEAFVGMGATLLDG----VVVERHGMVAAGSLV  169 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~g----v~Ig~~~vIgagsvV  169 (270)
                      .+++|++++.|+.++.+.++    ..||+++.|..++++
T Consensus       341 ~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        341 ERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             eEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence            99999999999999888765    556666666666554

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.29  E-value=4.5e-11  Score=85.90  Aligned_cols=78  Identities=23%  Similarity=0.349  Sum_probs=52.3

Q ss_pred             ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEEC
Q 024224           73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (270)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~  152 (270)
                      ||+++.|++++.|. +   ..||++|.|++++.|.           +++|++++.|++++.+.++.|++++.|++++.+.
T Consensus         2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~-----------~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~   66 (81)
T cd04652           2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKIT-----------NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK   66 (81)
T ss_pred             ccCCCEECCCCEEe-C---cEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc
Confidence            45556666666554 1   4667777777777775           4667777777777777777777777777777773


Q ss_pred             CCcEECCCcEECCC
Q 024224          153 DGVVVERHGMVAAG  166 (270)
Q Consensus       153 ~gv~Ig~~~vIgag  166 (270)
                       ++.|++++.|+++
T Consensus        67 -~~ii~~~~~i~~~   79 (81)
T cd04652          67 -DCLVGSGYRVEAG   79 (81)
T ss_pred             -cCEECCCcEeCCC
Confidence             4666666666554

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.29  E-value=2.9e-11  Score=113.91  Aligned_cols=82  Identities=30%  Similarity=0.443  Sum_probs=51.2

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      +.+++++.|.+++.+.+++.||++|.|+++|.|.    +.+||++|.|++++.|.           +++||++|.|++++
T Consensus       270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~----~~~i~~~~~I~~~~~i~-----------~~~ig~~~~Ig~~~  334 (456)
T PRK14356        270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR----DAVVSSGATIHSFSHLE-----------GAEVGDGCSVGPYA  334 (456)
T ss_pred             cEECCCCEEeCCcEEeCceEECCCCEECCCeEEE----eeEECCCCEEeeeEEEc-----------ccceecccEECCce
Confidence            3444444444444555567777778887777776    25788888888877775           45666666666666


Q ss_pred             EEe-ceEECCCcEECCcc
Q 024224          133 VLH-GCTVEDEAFVGMGA  149 (270)
Q Consensus       133 ~i~-~~~Ig~~~~Ig~~a  149 (270)
                      .+. +++||++|.||.++
T Consensus       335 ~i~~~~~ig~~~~ig~~~  352 (456)
T PRK14356        335 RLRPGAVLEEGARVGNFV  352 (456)
T ss_pred             EECCCCEECCCCEecCCc
Confidence            554 35555555555543

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.28  E-value=4.7e-11  Score=85.18  Aligned_cols=77  Identities=19%  Similarity=0.392  Sum_probs=56.9

Q ss_pred             ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEEC
Q 024224           73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (270)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~  152 (270)
                      ||+++.|++++.|..    ..||++|.|++++.|.           ++.|++++.|++++.+.+++|++++.|++++.+.
T Consensus         2 ig~~~~I~~~~~i~~----s~ig~~~~Ig~~~~i~-----------~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~   66 (79)
T cd03356           2 IGESTVIGENAIIKN----SVIGDNVRIGDGVTIT-----------NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV   66 (79)
T ss_pred             ccCCcEECCCCEEeC----CEECCCCEECCCCEEe-----------CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence            556666666666651    4677788888888776           5778888888888888888888888888888777


Q ss_pred             CCcEECCCcEEC
Q 024224          153 DGVVVERHGMVA  164 (270)
Q Consensus       153 ~gv~Ig~~~vIg  164 (270)
                      .++.+++++.|+
T Consensus        67 ~~~~ig~~~~i~   78 (79)
T cd03356          67 NLCIIGDDVVVE   78 (79)
T ss_pred             CCeEECCCeEEC
Confidence            767777776664

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.28  E-value=2.6e-11  Score=98.76  Aligned_cols=99  Identities=22%  Similarity=0.304  Sum_probs=66.0

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +..++.|++.+.|++++.|+.+    .+++|.   ..++||++|.|+++|+|......  ...+.++||++|+|+.++++
T Consensus        58 ~~~~~~I~~~~~Ig~~~~i~~~----~g~~Ig---~~~~IG~~~~I~~~v~ig~~~~~--~~~~~~~Ig~~v~Ig~~a~I  128 (162)
T TIGR01172        58 VLTGVDIHPGARIGRGVFIDHG----TGVVIG---ETAVIGDDVTIYHGVTLGGTGKE--KGKRHPTVGEGVMIGAGAKV  128 (162)
T ss_pred             eeeCeEeCCCCEECCCeEECCC----CeEEEC---CCCEECCCCEEcCCCEECCCccc--cCCcCCEECCCcEEcCCCEE
Confidence            3444555555554444444432    123343   12467788888888888754211  01345799999999999977


Q ss_pred             ec-eEECCCcEECCccEECCCcEECCCcEEC
Q 024224          135 HG-CTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       135 ~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      .+ ++||++|+||++|+|.++  |++++++.
T Consensus       129 ~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~  157 (162)
T TIGR01172       129 LGNIEVGENAKIGANSVVLKD--VPPGATVV  157 (162)
T ss_pred             ECCcEECCCCEECCCCEECCC--CCCCCEEE
Confidence            55 999999999999999986  57776653

Cysteine biosynthesis

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.26  E-value=1.4e-10  Score=86.93  Aligned_cols=82  Identities=26%  Similarity=0.354  Sum_probs=37.1

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .+++++.|.+++.+.+++.||+++.|++++.|.+   ++.||++|.|+.  .|.           .+.|++++.+.+++.
T Consensus        13 ~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~---~v~IG~~~~Ig~--~i~-----------~svi~~~~~i~~~~~   76 (101)
T cd05635          13 YIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYG---NTTIGPTCKIGG--EVE-----------DSIIEGYSNKQHDGF   76 (101)
T ss_pred             EECCCCEECCCCEEeCCCEECCCCEECCCCEEeC---cCEECCCCEECC--EEC-----------ccEEcCCCEecCcCE
Confidence            3444444544444444455555555555554442   234444444432  121           344444444444444


Q ss_pred             EeceEECCCcEECCccEE
Q 024224          134 LHGCTVEDEAFVGMGATL  151 (270)
Q Consensus       134 i~~~~Ig~~~~Ig~~a~I  151 (270)
                      |..++||+++.||+++..
T Consensus        77 lg~siIg~~v~ig~~~~~   94 (101)
T cd05635          77 LGHSYLGSWCNLGAGTNN   94 (101)
T ss_pred             EeeeEECCCCEECCCcee
Confidence            444444444444444433

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10502 putative acyl transferase; Provisional

Probab=99.25  E-value=7.6e-11  Score=97.85  Aligned_cols=55  Identities=18%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +.||+++.|++++.|.. ..++.||++|.|++++.|...        ..++||++|.|++++.|
T Consensus        52 a~iG~~~~I~~~a~i~~-~~~~~IG~~~~Ig~~~~I~~~--------~~v~IG~~~~I~~~~~I  106 (182)
T PRK10502         52 AKIGKGVVIRPSVRITY-PWKLTIGDYAWIGDDVWLYNL--------GEITIGAHCVISQKSYL  106 (182)
T ss_pred             cccCCCcEEcCCEEEec-CCeEEECCCeEECCCceeccc--------CceEECCCcEECCCeEE
Confidence            55677777777777663 245777777777777777642        24667777766666655

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.24  E-value=5.5e-11  Score=101.80  Aligned_cols=99  Identities=23%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc-EEeceEECCCcEECCcc
Q 024224           71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA-VLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~-~i~~~~Ig~~~~Ig~~a  149 (270)
                      +.++++|.|.-++++.   +.+.||+||.|+-++.|.+.-.  .....++.||++|.||.++ .+.|+.+|++|.|++|+
T Consensus       139 A~~~~gtMVd~~as~G---~~a~VGkn~higgGa~I~GVLe--p~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv  213 (271)
T COG2171         139 AGTGEGTMVDGRASVG---SCAQVGKNSHIGGGASIGGVLE--PLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGV  213 (271)
T ss_pred             cccCcceEEeeeeeee---ccEEECCCcccCCcceEeEEec--CCCCCCeEECCccEeccccceEeeeEeCCCcEEecce
Confidence            3344444444444433   2478888888888888876222  2235699999999999999 88999999999999999


Q ss_pred             EECCCcEECCCc--EECCCCeecCCCccC
Q 024224          150 TLLDGVVVERHG--MVAAGSLVRQNTRIP  176 (270)
Q Consensus       150 ~I~~gv~Ig~~~--vIgagsvV~~~~~I~  176 (270)
                      +|.+++.|..-+  -+ ++++|..+ .+|
T Consensus       214 ~I~~~tki~~~~~g~~-~~svv~~~-~lp  240 (271)
T COG2171         214 FITQDTKIYDRVAGRV-AGSVVVAG-TLP  240 (271)
T ss_pred             EEeCCcceEEeecccc-ccceEeec-ccC
Confidence            999999876532  23 55655554 355

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.24  E-value=1.5e-10  Score=101.56  Aligned_cols=112  Identities=18%  Similarity=0.195  Sum_probs=86.8

Q ss_pred             hhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCE-EEcC------CCceEECCCCEECCCCEEEcCCCCCCCC
Q 024224           44 TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCV-LRGD------VNSISVGSGTNIQDNSLVHVAKSNLSGK  116 (270)
Q Consensus        44 ~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~-I~~~------~~~v~IG~~~~I~~~~~I~~~~~~~~~~  116 (270)
                      .....+..++.|++++.|.+++.|++++.|..+++|+.++. +...      ...++||++|.||.+|.|...-..  +.
T Consensus       170 m~dyVvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsG--g~  247 (341)
T TIGR03536       170 MTDYVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSG--GG  247 (341)
T ss_pred             hhheEccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeC--CC
Confidence            34556677888999999998888888888888888888877 3211      135789999999999999542110  01


Q ss_pred             ccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEEC
Q 024224          117 VLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE  158 (270)
Q Consensus       117 ~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig  158 (270)
                      ...+.||++|+||.++.+ ++.||++|+||+|+.|.+++.|-
T Consensus       248 ~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       248 NIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             ceeEEECCCcEECCCCEE-eeEECCCCEECCCCEEeCCcEEE
Confidence            123999999999999999 99999999999999999988764

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.23  E-value=8.4e-11  Score=83.06  Aligned_cols=77  Identities=23%  Similarity=0.444  Sum_probs=58.8

Q ss_pred             EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEE
Q 024224           72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATL  151 (270)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I  151 (270)
                      .||+++.|++++.|.+   ++.||++|.|++++.|......           .        ...++.||++|+++.++++
T Consensus         2 ~ig~~~~i~~~~~i~~---~~~Ig~~~~I~~~~~i~~~~~~-----------~--------~~~~~~ig~~~~v~~~~~i   59 (78)
T cd00208           2 FIGEGVKIHPKAVIRG---PVVIGDNVNIGPGAVIGAATGP-----------N--------EKNPTIIGDNVEIGANAVI   59 (78)
T ss_pred             EECCCeEECCCCEEeC---cEEECCCCEECCCCEEEeccCC-----------C--------ccCCcEECCCcEECCCCEE
Confidence            5777888888888763   5788888888888888753221           0        2344788889999998999


Q ss_pred             CCCcEECCCcEECCCCeec
Q 024224          152 LDGVVVERHGMVAAGSLVR  170 (270)
Q Consensus       152 ~~gv~Ig~~~vIgagsvV~  170 (270)
                      .+++.||++++|++++.|.
T Consensus        60 ~~~~~ig~~~~i~~~s~v~   78 (78)
T cd00208          60 HGGVKIGDNAVIGAGAVVT   78 (78)
T ss_pred             eCCCEECCCCEECcCcEeC
Confidence            8889999999998888763

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.23  E-value=1.6e-10  Score=83.09  Aligned_cols=79  Identities=20%  Similarity=0.299  Sum_probs=69.4

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      |++++.|++++.+. ++.||++|.|++++.|.    +..|+++|.|++++.|.           ++.+++++.|++++.+
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~----~s~i~~~~~ig~~~~l~-----------~svi~~~~~i~~~~~v   65 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT----NCVIMDNVTIEDGCTLE-----------NCIIGNGAVIGEKCKL   65 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEe----CcEEeCCCEECCCCEEe-----------ccEEeCCCEECCCCEE
Confidence            67888888888886 68899999999999997    25899999999999996           6899999999999999


Q ss_pred             eceEECCCcEECCcc
Q 024224          135 HGCTVEDEAFVGMGA  149 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a  149 (270)
                      .++.||+++.|++++
T Consensus        66 ~~~ii~~~~~i~~~~   80 (81)
T cd04652          66 KDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCEECCCcEeCCCC
Confidence            988888888888764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.21  E-value=1.5e-10  Score=88.89  Aligned_cols=50  Identities=24%  Similarity=0.378  Sum_probs=22.1

Q ss_pred             CCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224           74 GRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG  136 (270)
Q Consensus        74 G~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~  136 (270)
                      |+++.|++++.|.+   ++.||++|.|++++.|..          .++||++|.|++++.+.+
T Consensus         2 g~~~~I~~~~~i~~---~~~Ig~~~~I~~~~~i~~----------~~~Ig~~~~I~~~~~i~~   51 (119)
T cd03358           2 GDNCIIGTNVFIEN---DVKIGDNVKIQSNVSIYE----------GVTIEDDVFIGPNVVFTN   51 (119)
T ss_pred             CCCCEECCCcEECC---CcEECCCcEECCCcEEeC----------CeEECCCcEEcCCeEEec
Confidence            33444444444432   234444555555544431          344555555554444433

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.21  E-value=1.3e-10  Score=95.25  Aligned_cols=100  Identities=18%  Similarity=0.291  Sum_probs=71.8

Q ss_pred             CCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           50 DKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      +....||++++|++++.+.  ++++||++|.|++++.|......+...+..   .+..+          .++++||++|+
T Consensus        60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~---~~~~~----------~~~v~IG~~~~  126 (169)
T cd03357          60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERN---RGLEY----------AKPITIGDNVW  126 (169)
T ss_pred             CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHcc---cccee----------cCCcEeCCCEE
Confidence            4466788888888888775  568888888888888887432222111111   12222          35899999999


Q ss_pred             ECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       128 I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      |+.+++| .+++||++|+||++|+|.++  |.+++++.
T Consensus       127 Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~  162 (169)
T cd03357         127 IGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAA  162 (169)
T ss_pred             ECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEE
Confidence            9999976 46999999999999999884  66776653

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.21  E-value=7.5e-11  Score=106.81  Aligned_cols=92  Identities=29%  Similarity=0.443  Sum_probs=77.9

Q ss_pred             EECCC-cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceE
Q 024224           60 FVAPS-ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCT  138 (270)
Q Consensus        60 ~I~~~-~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~  138 (270)
                      .+.|. ..|.+++.||.+|.|.++++|.   +++.||++|.||++|.|.           ++.||+++.|..++.+.+++
T Consensus       257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~---G~t~ig~~v~iGpg~~i~-----------ds~I~~~a~I~~~S~ie~s~  322 (460)
T COG1207         257 LIDPATTYIRGDVEIGRDVVIEPNVILE---GNTVIGDNVVIGPGSVIK-----------DSVIGDNAVIKAYSVIEGST  322 (460)
T ss_pred             EeCCCeEEEcCcEEECCceEEecCcEEe---eeEEECCceEECCCcEEE-----------eeEEcCCCEEEecceeeccE
Confidence            44444 4667899999999999999999   468999999999999998           78899999999999998888


Q ss_pred             ECCCcEECCccEECCCcEECCCcEECC
Q 024224          139 VEDEAFVGMGATLLDGVVVERHGMVAA  165 (270)
Q Consensus       139 Ig~~~~Ig~~a~I~~gv~Ig~~~vIga  165 (270)
                      ||++|.||+-+.+.|++.+++++.||.
T Consensus       323 vg~~~~VGPfA~LRPg~~L~~~~hIGN  349 (460)
T COG1207         323 VGEGATVGPFARLRPGAVLGADVHIGN  349 (460)
T ss_pred             ecCCcccCCccccCCcCcccCCCeEee
Confidence            888888888888888777777666653

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.19  E-value=1.7e-10  Score=100.83  Aligned_cols=99  Identities=18%  Similarity=0.235  Sum_probs=68.7

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .+..++.|+|.+.|+.++.|+.++    +.+|.   ..+.||++|.|..+++|.+..+..  .....+||++|+||.+++
T Consensus       137 ~~~~gidI~~~a~IG~g~~I~h~~----givIG---~~a~IGdnv~I~~~VtiGg~~~~~--~~~~p~IGd~V~IGaga~  207 (273)
T PRK11132        137 SVAFQVDIHPAAKIGRGIMLDHAT----GIVIG---ETAVIENDVSILQSVTLGGTGKTS--GDRHPKIREGVMIGAGAK  207 (273)
T ss_pred             eeeeeeEecCcceECCCeEEcCCC----CeEEC---CCCEECCCCEEcCCcEEecCcccC--CCcCCEECCCcEEcCCCE
Confidence            344455555555555444444432    33444   246889999999999997532210  113579999999999997


Q ss_pred             Ee-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          134 LH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       134 i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      |. +++||++|.||+|++|..+  |.+++++
T Consensus       208 Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v  236 (273)
T PRK11132        208 ILGNIEVGRGAKIGAGSVVLQP--VPPHTTA  236 (273)
T ss_pred             EcCCCEECCCCEECCCCEECcc--cCCCcEE
Confidence            65 5999999999999999875  7777666

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=5.9e-11  Score=111.56  Aligned_cols=69  Identities=14%  Similarity=0.316  Sum_probs=57.0

Q ss_pred             cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCc
Q 024224           69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMG  148 (270)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~  148 (270)
                      .+++-++.+++.+.+.+.   .++.||.++.||.++.|.           +++||.+|.||.++.|.++.|+++|+||.|
T Consensus       314 ~~IYk~~dv~~~~~~~v~---~~~~ig~gT~Ig~g~~I~-----------NSVIG~~c~IgsN~~I~~S~iw~~v~Igdn  379 (673)
T KOG1461|consen  314 RNIYKSPDVVLSHSVIVG---ANVVIGAGTKIGSGSKIS-----------NSVIGANCRIGSNVRIKNSFIWNNVTIGDN  379 (673)
T ss_pred             cccccCccceehhhcccc---ceEEecccccccCCCeee-----------cceecCCCEecCceEEeeeeeecCcEECCC
Confidence            356667777777777766   357889999999999998           799999999999999998888888888888


Q ss_pred             cEE
Q 024224          149 ATL  151 (270)
Q Consensus       149 a~I  151 (270)
                      |.|
T Consensus       380 c~I  382 (673)
T KOG1461|consen  380 CRI  382 (673)
T ss_pred             ceE
Confidence            665

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.18  E-value=3.5e-10  Score=85.37  Aligned_cols=98  Identities=23%  Similarity=0.384  Sum_probs=73.6

Q ss_pred             ceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           53 PAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      ..|+++++|++++.|.+  ++.||++|.|++++.|... ....++.++.+.....           ..+++||++|+|+.
T Consensus         2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~-~~~~~~~~~~~~~~~~-----------~~~~~Ig~~~~ig~   69 (109)
T cd04647           2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-NHDIDDPERPIEQGVT-----------SAPIVIGDDVWIGA   69 (109)
T ss_pred             eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC-CCCCCccccccccccc-----------cCCeEECCCCEECC
Confidence            46899999999999988  8999999999999999843 2222222222211211           24789999999999


Q ss_pred             CcEE-eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          131 SAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       131 ~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      ++.+ .++.||++|+|++++.|..  .++++++++
T Consensus        70 ~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~  102 (109)
T cd04647          70 NVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA  102 (109)
T ss_pred             CCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence            9987 5699999999999999973  567776663

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.17  E-value=5.7e-10  Score=93.40  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             EECCCcEE--ecCeEECCCCEEccCCEEEc-CCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224           60 FVAPSASI--IGDVQVGRGSSIWYGCVLRG-DVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG  136 (270)
Q Consensus        60 ~I~~~~~i--~~~v~IG~~~~I~~~~~I~~-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~  136 (270)
                      +|.|...+  +.++.+|+++.++.++++.. +.+.+.||++|.|++++.|...        ..++||++|.|++++.|.+
T Consensus        31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~--------~~v~IG~~v~Ig~~v~I~~  102 (192)
T PRK09677         31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACI--------ESITIGRDTLIASKVFITD  102 (192)
T ss_pred             EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccC--------ceEEECCCCEECCCeEEEC
Confidence            56665544  35688999999999999953 3467999999999999999742        3789999999999998864

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.17  E-value=2.4e-10  Score=93.67  Aligned_cols=88  Identities=24%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             CCceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEE
Q 024224           51 KAPAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTV  128 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I  128 (270)
                      .+..|++++.|+++..|.-  ++.||+.+.|               |++|.|..+++|.+...+. + ...-+||++|.|
T Consensus        66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~I---------------Gddv~I~~gVTLGgtg~~~-g-~RhPtIg~~V~I  128 (194)
T COG1045          66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVI---------------GDDVTIYHGVTLGGTGKES-G-KRHPTIGNGVYI  128 (194)
T ss_pred             cceeeCCCCeECCceEEcCCceEEEcceeEE---------------CCCeEEEcceEecCCCCcC-C-CCCCccCCCeEE
Confidence            3557899999999888853  6889887755               5555566777776533221 1 235679999999


Q ss_pred             CcCc-EEeceEECCCcEECCccEECCCc
Q 024224          129 GHSA-VLHGCTVEDEAFVGMGATLLDGV  155 (270)
Q Consensus       129 ~~~~-~i~~~~Ig~~~~Ig~~a~I~~gv  155 (270)
                      |.++ +++++.||+++.||+||+|.+.+
T Consensus       129 GagAkILG~I~IGd~akIGA~sVVlkdV  156 (194)
T COG1045         129 GAGAKILGNIEIGDNAKIGAGSVVLKDV  156 (194)
T ss_pred             CCCCEEEcceEECCCCEECCCceEccCC
Confidence            9999 55679999999999999999863

>PRK10191 putative acyl transferase; Provisional

Probab=99.16  E-value=2.8e-10  Score=90.84  Aligned_cols=60  Identities=22%  Similarity=0.440  Sum_probs=42.7

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCC
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG  154 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~g  154 (270)
                      +.||++|.|+++|+|......   ....+.||++|+|+.++.+.+ +.||++++||++++|.++
T Consensus        68 ~~IGd~~~I~h~v~IG~~~~~---~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d  128 (146)
T PRK10191         68 VVAGDDFTIRHGVTIGNRGAD---NMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS  128 (146)
T ss_pred             cEECCCCEECCCCEECCCCcC---CCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence            345555555555555432110   123568999999999998765 999999999999999875

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.15  E-value=3.4e-10  Score=80.53  Aligned_cols=74  Identities=22%  Similarity=0.433  Sum_probs=59.6

Q ss_pred             ECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCC
Q 024224           94 VGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT  173 (270)
Q Consensus        94 IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~  173 (270)
                      ||++|.|++++.|.           ++.|+++|.|++++.+.++.|++++.|++++.|. ++.|++++.|+.++.+..++
T Consensus         2 ig~~~~I~~~~~i~-----------~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~   69 (79)
T cd05787           2 IGRGTSIGEGTTIK-----------NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGS   69 (79)
T ss_pred             ccCCCEECCCCEEe-----------ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCC
Confidence            68899999999986           5789999999999999999999999999988885 57777777777776666655


Q ss_pred             ccCCCc
Q 024224          174 RIPSGE  179 (270)
Q Consensus       174 ~I~~~~  179 (270)
                      .+.+++
T Consensus        70 ~v~~~~   75 (79)
T cd05787          70 LISFGV   75 (79)
T ss_pred             EEeCCc
Confidence            555444

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.15  E-value=3.1e-10  Score=94.13  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             CCCceeCCCCEECCCcEEecC--eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           50 DKAPAVDKDAFVAPSASIIGD--VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~--v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      +.+..||++++|.+++.|...  ++||++|.|++++.|....   ...+......+..+          .+++.||++|+
T Consensus        71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~---h~~~~~~~~~~~~~----------~~~v~IGd~v~  137 (183)
T PRK10092         71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTAT---HPLDPVARNSGAEL----------GKPVTIGNNVW  137 (183)
T ss_pred             cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCC---CCCChHHcccccee----------cCCeEECCCcE
Confidence            455566666666666666543  5777777777777776321   11111111122222          24788999999


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      ||.++++. +++||++|+||++++|...  |+++++++
T Consensus       138 IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~  173 (183)
T PRK10092        138 IGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVG  173 (183)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEE
Confidence            99999775 5999999999999999875  56776663

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=4.4e-10  Score=102.80  Aligned_cols=96  Identities=23%  Similarity=0.394  Sum_probs=80.3

Q ss_pred             cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcE
Q 024224           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF  144 (270)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~  144 (270)
                      +.+.+++.||.+|.|++++.|.+   .++||++|.|++++.|.           ++.|.++|.|++++.+.+++||++|.
T Consensus       256 ~~i~gp~~ig~~~~i~~~~~i~~---~~~ig~~~~I~~~~~i~-----------~Sii~~~~~i~~~~~i~~sIi~~~~~  321 (358)
T COG1208         256 AYIIGPVVIGPGAKIGPGALIGP---YTVIGEGVTIGNGVEIK-----------NSIIMDNVVIGHGSYIGDSIIGENCK  321 (358)
T ss_pred             ceEeCCEEECCCCEECCCCEECC---CcEECCCCEECCCcEEE-----------eeEEEcCCEECCCCEEeeeEEcCCcE
Confidence            78888999999999999999985   46999999999999998           79999999999999999999999999


Q ss_pred             ECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          145 VGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       145 Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                      ||++. .     +|+ +.++.++.+.+++++++++++
T Consensus       322 ig~~~-~-----i~d-~~~g~~~~i~~g~~~~~~~~~  351 (358)
T COG1208         322 IGASL-I-----IGD-VVIGINSEILPGVVVGPGSVV  351 (358)
T ss_pred             ECCce-e-----ecc-eEecCceEEcCceEeCCCccc
Confidence            99933 2     666 666666666666666655544

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.15  E-value=3.7e-10  Score=98.67  Aligned_cols=65  Identities=25%  Similarity=0.401  Sum_probs=50.6

Q ss_pred             ceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEEC
Q 024224           91 SISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE  158 (270)
Q Consensus        91 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig  158 (270)
                      .++||++|.|+.++.|.+.-.+  +...++.||++|+||.++.| ++.||++|.||+|++|..++.|-
T Consensus       199 dvvIGd~~~IgpGvsI~G~LsG--g~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       199 GVVVGDGSDIGGGASIMGTLSG--GGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             CCEECCCCEECCCceecceecC--CCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCeEEE
Confidence            3678888888888886541100  01235999999999999999 99999999999999999887663

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.14  E-value=5.3e-10  Score=80.09  Aligned_cols=60  Identities=20%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             ECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEEC
Q 024224           94 VGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus        94 IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      ||++|.|++++.|.           ++.+++++.|++++.+.++.+++++.+++++.+..+..|++++.|+
T Consensus        20 Ig~~~~Ig~~~~i~-----------~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824          20 IGPNVTIGDGVRLQ-----------RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             ECCCCEECCCcEEe-----------eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            34445555555554           4555666666666666666666666666666666556666665554

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.14  E-value=5.7e-10  Score=93.90  Aligned_cols=102  Identities=20%  Similarity=0.206  Sum_probs=65.1

Q ss_pred             EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEece----E---ECCCcE
Q 024224           72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGC----T---VEDEAF  144 (270)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~----~---Ig~~~~  144 (270)
                      .+|+++.|.+.+.+. ...++.||++|.|+.+|+|..        .+.++||++|.|++++.|...    .   -..+..
T Consensus        57 ~ig~~~~I~~~~~~~-~g~ni~IG~~v~In~~~~I~d--------~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~  127 (203)
T PRK09527         57 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVD--------DYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM  127 (203)
T ss_pred             hcCCCcEEcCCEEEe-eCCCcEEcCCcEECCCcEEec--------CCCEEECCCCEECCCCEEEeCCCCCChhhcccccc
Confidence            588999999988885 335799999999999999974        237899999999999988531    0   011222


Q ss_pred             ECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          145 VGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       145 Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                      .+..++|.+++.||.+++|.+++.|..++.|++++++.
T Consensus       128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~  165 (203)
T PRK09527        128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT  165 (203)
T ss_pred             ccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            23334444444444444444444444444444555554

>PLN02739 serine acetyltransferase

Probab=99.14  E-value=2.4e-10  Score=102.07  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC-CCCee
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA-AGSLV  169 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg-agsvV  169 (270)
                      ++||++|.|..+|+|.+....  ...+.++||++|+||.+++| .+++||+++.||+|++|..+  |.+++++. .-+.+
T Consensus       232 avIGdnv~I~~gVTIGg~g~~--~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAri  307 (355)
T PLN02739        232 AVIGDRVSILHGVTLGGTGKE--TGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKL  307 (355)
T ss_pred             CEECCCCEEcCCceeCCcCCc--CCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEE
Confidence            456677777777777543211  11346899999999999966 45999999999999999875  67777663 23333


Q ss_pred             cCCCccCCCcEEeecCceec-cCCCHHHHHHHHHHHHHH
Q 024224          170 RQNTRIPSGEVWGGNPAKFL-RKLTDEEIAFISQSATNY  207 (270)
Q Consensus       170 ~~~~~I~~~~iv~G~pa~~i-~~~~~~~~~~~~~~~~~~  207 (270)
                      .+.  ..     ...|+... .+.+++....+.......
T Consensus       308 I~~--~~-----~~~p~~~m~~DaT~e~~~~Ia~ay~~l  339 (355)
T PLN02739        308 IGF--VD-----EQDPSLTMEYDATREFFQNVAVAYRET  339 (355)
T ss_pred             ecc--CC-----ccchhhhhhhhhhHHHHHHHHHHHHhh
Confidence            222  11     11355433 245566555555544443

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.13  E-value=9.3e-10  Score=78.81  Aligned_cols=77  Identities=26%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +++++.|++++.+++++.||++|.|++++.|.    +..|+++|.|++++.|.           ++.+++++.+++++.+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~----~sii~~~~~i~~~~~i~-----------~sii~~~~~v~~~~~~   66 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ----RCVILSNSTVRDHSWVK-----------SSIVGWNSTVGRWTRL   66 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEe----eeEEcCCCEECCCCEEe-----------CCEEeCCCEECCCcEE
Confidence            45667777777777777788888888888887    35889999999999997           6899999999998877


Q ss_pred             ec-eEECCCcEEC
Q 024224          135 HG-CTVEDEAFVG  146 (270)
Q Consensus       135 ~~-~~Ig~~~~Ig  146 (270)
                      .+ +.||+++.|+
T Consensus        67 ~~~~~ig~~~~i~   79 (80)
T cd05824          67 ENVTVLGDDVTIK   79 (80)
T ss_pred             ecCEEECCceEEC
Confidence            66 7777777665

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02694 serine O-acetyltransferase

Probab=99.12  E-value=3.9e-10  Score=98.82  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      +.||++|.|..++++.+....  ...++++||++|+||.+++| .+++||++|.||++++|.++  |.+++++
T Consensus       187 a~IGdnv~I~~~VtLGg~g~~--~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kd--VP~~~~v  255 (294)
T PLN02694        187 AVIGNNVSILHHVTLGGTGKA--CGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID--VPPRTTA  255 (294)
T ss_pred             cEECCCCEEeecceeCCcccc--cCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCc--CCCCcEE
Confidence            345566666677776542110  01247899999999999987 66999999999999999875  6666655

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.11  E-value=1.2e-09  Score=77.81  Aligned_cols=76  Identities=21%  Similarity=0.377  Sum_probs=60.0

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      |++++.|++++.+.+ +.||++|.|++++.|.    +..|+++|.|++++.+.           +++|++++.|++++.+
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~----~svi~~~~~i~~~~~i~-----------~svv~~~~~i~~~~~i   65 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT----NSILMDNVTIGANSVIV-----------DSIIGDNAVIGENVRV   65 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEe----CCEEeCCCEECCCCEEE-----------CCEECCCCEECCCCEE
Confidence            567777877777776 7888999999999887    24899999999999997           5788999888888776


Q ss_pred             ec-eEECCCcEEC
Q 024224          135 HG-CTVEDEAFVG  146 (270)
Q Consensus       135 ~~-~~Ig~~~~Ig  146 (270)
                      .. +.|++++.|+
T Consensus        66 ~~~~~ig~~~~i~   78 (79)
T cd03356          66 VNLCIIGDDVVVE   78 (79)
T ss_pred             cCCeEECCCeEEC
Confidence            55 6666666554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=4.1e-10  Score=100.63  Aligned_cols=88  Identities=23%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcE
Q 024224           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF  144 (270)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~  144 (270)
                      +.++.++.+|++|.|++++.|.    ..+||.+|.||+.+.|.           ++.+.++++||+|+.|.+|+||+++.
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik----~SviG~nC~Ig~~~~v~-----------nSilm~nV~vg~G~~IensIIg~gA~  393 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIK----RSVIGSNCDIGERVKVA-----------NSILMDNVVVGDGVNIENSIIGMGAQ  393 (433)
T ss_pred             eccchhhccCCCceecccceee----eeeecCCccccCCcEEE-----------eeEeecCcEecCCcceecceecccce
Confidence            5666778888888888888886    45999999999999998           79999999999999999999999999


Q ss_pred             ECCccEECCCcEECCCcEECCCCe
Q 024224          145 VGMGATLLDGVVVERHGMVAAGSL  168 (270)
Q Consensus       145 Ig~~a~I~~gv~Ig~~~vIgagsv  168 (270)
                      ||++|.+. +|.||.+-+|-|...
T Consensus       394 Ig~gs~L~-nC~Ig~~yvVeak~~  416 (433)
T KOG1462|consen  394 IGSGSKLK-NCIIGPGYVVEAKGK  416 (433)
T ss_pred             ecCCCeee-eeEecCCcEEccccc
Confidence            99999996 477666666654433

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.08  E-value=2.6e-09  Score=80.51  Aligned_cols=76  Identities=18%  Similarity=0.329  Sum_probs=36.4

Q ss_pred             EECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEE
Q 024224           60 FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTV  139 (270)
Q Consensus        60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~I  139 (270)
                      +|++++.|. ++.||++|.|+ ++.|.    +..||++|.|++++.|.           ++.|++++.|+.++.+.++.|
T Consensus         3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~----~svi~~~~~Ig~~~~I~-----------~siI~~~~~Ig~~~~i~~sii   65 (104)
T cd04651           3 YIGRRGEVK-NSLVSEGCIIS-GGTVE----NSVLFRGVRVGSGSVVE-----------DSVIMPNVGIGRNAVIRRAII   65 (104)
T ss_pred             eecCCCEEE-eEEECCCCEEc-CeEEE----eCEEeCCCEECCCCEEE-----------EeEEcCCCEECCCCEEEeEEE
Confidence            344444442 34455555554 44444    12455555555555554           344555555555555444444


Q ss_pred             CCCcEECCccEEC
Q 024224          140 EDEAFVGMGATLL  152 (270)
Q Consensus       140 g~~~~Ig~~a~I~  152 (270)
                      |+++.|++++.+.
T Consensus        66 g~~~~Ig~~~~v~   78 (104)
T cd04651          66 DKNVVIPDGVVIG   78 (104)
T ss_pred             CCCCEECCCCEEC
Confidence            4444444444443

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.07  E-value=1.5e-09  Score=81.81  Aligned_cols=79  Identities=15%  Similarity=0.256  Sum_probs=68.2

Q ss_pred             CEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcE
Q 024224           77 SSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVV  156 (270)
Q Consensus        77 ~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~  156 (270)
                      ++|++++.|.    +..||++|.|+ ++.|.           ++.|++++.|++++.|.++.|++++.||.++.+ .++.
T Consensus         2 ~~i~~~~~i~----~s~Ig~~~~I~-~~~I~-----------~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~si   64 (104)
T cd04651           2 PYIGRRGEVK----NSLVSEGCIIS-GGTVE-----------NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAI   64 (104)
T ss_pred             ceecCCCEEE----eEEECCCCEEc-CeEEE-----------eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEE
Confidence            3455666664    35788999998 88887           688999999999999999999999999999999 5799


Q ss_pred             ECCCcEECCCCeecCC
Q 024224          157 VERHGMVAAGSLVRQN  172 (270)
Q Consensus       157 Ig~~~vIgagsvV~~~  172 (270)
                      |++++.|++++.+..+
T Consensus        65 ig~~~~Ig~~~~v~~~   80 (104)
T cd04651          65 IDKNVVIPDGVVIGGD   80 (104)
T ss_pred             ECCCCEECCCCEECCC
Confidence            9999999999999887

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.06  E-value=3.2e-10  Score=87.90  Aligned_cols=103  Identities=20%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             ceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC---------CceEECCCCEECCCCEEEcCCCCCCCCccCe
Q 024224           53 PAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV---------NSISVGSGTNIQDNSLVHVAKSNLSGKVLPT  120 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~---------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~  120 (270)
                      ..+...+.+..++.|.+   ++.+|..|.+..+++|++..         .++.||+++.|++.|++.           -.
T Consensus        34 I~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn-----------AA  102 (184)
T KOG3121|consen   34 ILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN-----------AA  102 (184)
T ss_pred             EEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee-----------hh
Confidence            35566678888899987   59999999999999998543         479999999999999998           46


Q ss_pred             EECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCC
Q 024224          121 TIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAG  166 (270)
Q Consensus       121 ~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgag  166 (270)
                      .||++|++|.+++|+. |++.|.|.|-+++++-+.+.+.+.+.++++
T Consensus       103 qIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~  149 (184)
T KOG3121|consen  103 QIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN  149 (184)
T ss_pred             hheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence            7888888888876644 666666666666666666666666666544

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.05  E-value=2.4e-09  Score=75.47  Aligned_cols=53  Identities=25%  Similarity=0.408  Sum_probs=38.7

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-----CceEECCCCEECCCCEE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-----NSISVGSGTNIQDNSLV  106 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-----~~v~IG~~~~I~~~~~I  106 (270)
                      .|++++.|++++.|.+.+.||++|.|++++.|.+..     .++.||++|.|+.++++
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i   59 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVI   59 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEE
Confidence            588999999999998899999999999999998542     12444444444444444

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.04  E-value=2.8e-09  Score=97.28  Aligned_cols=106  Identities=24%  Similarity=0.306  Sum_probs=74.2

Q ss_pred             ECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEEC
Q 024224           61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVE  140 (270)
Q Consensus        61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig  140 (270)
                      +.+.+.+.+.+.||++|.| .++.|.+   ++.||++|.|+ +++|..          +++||++|.|+ ++.|.+++|+
T Consensus       245 i~~~~~i~~~~~i~~~~~i-~~~~i~~---~~~Ig~~~~I~-~~~i~~----------~~~Ig~~~~i~-~~~i~~s~i~  308 (353)
T TIGR01208       245 VDDESKIRGRVVVGEGAKI-VNSVIRG---PAVIGEDCIIE-NSYIGP----------YTSIGEGVVIR-DAEVEHSIVL  308 (353)
T ss_pred             cCCCCEEcCCEEECCCCEE-eCCEEEC---CcEECCCCEEc-CcEECC----------CCEECCCCEEe-eeEEEeeEEc
Confidence            5666777888889999999 7888874   46888888886 455542          67777777776 5777778888


Q ss_pred             CCcEECCcc-EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCcee
Q 024224          141 DEAFVGMGA-TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKF  188 (270)
Q Consensus       141 ~~~~Ig~~a-~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~  188 (270)
                      +++.|+.++ .+ .++.|++++.|++++.+..+     ..++.|.++++
T Consensus       309 ~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~-----~~~~~g~~~~~  351 (353)
T TIGR01208       309 DESVIEGVQARI-VDSVIGKKVRIKGNRRRPGD-----LRLTIGDYSQV  351 (353)
T ss_pred             CCCEEcCCccee-ecCEEcCCCEECCCcccccc-----cceEEcCCcee
Confidence            888887774 44 45777777777666555432     23567766653

Alternate name: dTDP-D-glucose synthase

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.03  E-value=2.6e-09  Score=100.29  Aligned_cols=100  Identities=16%  Similarity=0.354  Sum_probs=72.1

Q ss_pred             CcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC---------------C---
Q 024224           64 SASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD---------------N---  125 (270)
Q Consensus        64 ~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~---------------~---  125 (270)
                      ++.+.+ +.|+++|.|+ ++.|.    +.+||++|.|+++|.|..          .+.+|.               +   
T Consensus       310 ~~~i~~-s~I~~~~~I~-~~~I~----~svI~~~~~Ig~~~~I~~----------sii~g~~~~~~~~~~~~~~~~~~~~  373 (436)
T PLN02241        310 DCRITD-SIISHGCFLR-ECKIE----HSVVGLRSRIGEGVEIED----------TVMMGADYYETEEEIASLLAEGKVP  373 (436)
T ss_pred             CCeEEE-eEEcCCcEEc-CeEEE----eeEEcCCCEECCCCEEEE----------eEEECCCccccccccccccccCCcc
Confidence            344444 7788888888 88886    248999999999999874          333342               2   


Q ss_pred             cEECcCcEEeceEECCCcEECCccEEC------CCcEECCCcEECCC-CeecCCCccCCCc
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLL------DGVVVERHGMVAAG-SLVRQNTRIPSGE  179 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~------~gv~Ig~~~vIgag-svV~~~~~I~~~~  179 (270)
                      +.|+.++.+.+++|+++|+||+++.+.      +..++|++++|+.| ++|++++.+++++
T Consensus       374 ~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  434 (436)
T PLN02241        374 IGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT  434 (436)
T ss_pred             eEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence            378888888888899999999988886      44566777777776 3666666666554

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.5e-09  Score=97.86  Aligned_cols=99  Identities=23%  Similarity=0.379  Sum_probs=81.0

Q ss_pred             CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEEC
Q 024224           50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVG  129 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~  129 (270)
                      ...+.|++++.|++++.|++++.||++|.|+.++.|.    +..|.++|.|++++.|.           +++||++|.|+
T Consensus       259 ~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~----~Sii~~~~~i~~~~~i~-----------~sIi~~~~~ig  323 (358)
T COG1208         259 IGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK----NSIIMDNVVIGHGSYIG-----------DSIIGENCKIG  323 (358)
T ss_pred             eCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEE----eeEEEcCCEECCCCEEe-----------eeEEcCCcEEC
Confidence            3445677777777777777777788888888777776    46999999999999998           79999999999


Q ss_pred             cCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCee
Q 024224          130 HSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV  169 (270)
Q Consensus       130 ~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV  169 (270)
                      . +. .   ||+ +.+|.++.+.++++++.++++.++.++
T Consensus       324 ~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~  357 (358)
T COG1208         324 A-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGEIE  357 (358)
T ss_pred             C-ce-e---ecc-eEecCceEEcCceEeCCCccccCcccc
Confidence            9 22 2   999 999999999999999998888777654

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.03  E-value=3.3e-09  Score=79.36  Aligned_cols=45  Identities=33%  Similarity=0.483  Sum_probs=38.3

Q ss_pred             cCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEEC
Q 024224          118 LPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       118 ~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      +.++||++++|+.++.+.. ++||++|+|++++.|.++  +.+++++.
T Consensus        53 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~   98 (101)
T cd03354          53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD--VPANSTVV   98 (101)
T ss_pred             CCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc--cCCCCEEE
Confidence            4789999999999998876 999999999999999874  66766654

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.00  E-value=6.1e-09  Score=78.86  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=28.3

Q ss_pred             CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           90 NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      .+++||++|.|++++.|...        ..++||++|.|++++.+.
T Consensus         2 ~~i~iG~~~~I~~~~~i~~~--------~~i~IG~~~~I~~~~~I~   39 (107)
T cd05825           2 WNLTIGDNSWIGEGVWIYNL--------APVTIGSDACISQGAYLC   39 (107)
T ss_pred             ceEEECCCCEECCCCEEeeC--------CceEECCCCEECCCeEee
Confidence            35788888888888888742        257888888888887764

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.97  E-value=7.7e-09  Score=82.65  Aligned_cols=104  Identities=23%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             ceeCCCCEECC-CcEEec-CeEECCCCEEccCCEEEcC-CCc--------eEECCCCEECCCCEEEcCCCCCCCCccCeE
Q 024224           53 PAVDKDAFVAP-SASIIG-DVQVGRGSSIWYGCVLRGD-VNS--------ISVGSGTNIQDNSLVHVAKSNLSGKVLPTT  121 (270)
Q Consensus        53 ~~i~~~~~I~~-~~~i~~-~v~IG~~~~I~~~~~I~~~-~~~--------v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~  121 (270)
                      ..||++++|++ .+.+.. .+.||++|.|++++.|... ..+        ..++++...++      ..........+++
T Consensus         2 ~~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~   75 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDD------AKFDDWPSKGDVI   75 (145)
T ss_pred             EEEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccc------cccccccccCCcE
Confidence            36888999988 455554 7999999999999998743 111        11111111000      0000111245899


Q ss_pred             ECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          122 IGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       122 Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      ||++|+|+.++.+ .+++||++|+||++|+|.++  ++++++++
T Consensus        76 Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~  117 (145)
T cd03349          76 IGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVG  117 (145)
T ss_pred             ECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEE
Confidence            9999999999988 56999999999999999875  56776663

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.97  E-value=5e-09  Score=98.22  Aligned_cols=94  Identities=18%  Similarity=0.358  Sum_probs=72.3

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC-------------------CcEECc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD-------------------NVTVGH  130 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~-------------------~v~I~~  130 (270)
                      ++.||++|.| +++.|.    +.+||++|.|+++|.|.           +++|+.                   ++.|+.
T Consensus       308 ~~~ig~~~~i-~~~~i~----~svi~~~~~Ig~~~~i~-----------~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~  371 (429)
T PRK02862        308 ESIIAEGCII-KNCSIH----HSVLGIRSRIESGCTIE-----------DTLVMGADFYESSEEREELRKEGKPPLGIGE  371 (429)
T ss_pred             eCEECCCCEE-CCcEEE----EEEEeCCcEECCCCEEE-----------eeEEecCcccccccccccccccCCcccEECC
Confidence            4788888888 788876    35999999999999997           456644                   688999


Q ss_pred             CcEEeceEECCCcEECCccEECCCcEECC------CcEECCC-CeecCCCccCCCc
Q 024224          131 SAVLHGCTVEDEAFVGMGATLLDGVVVER------HGMVAAG-SLVRQNTRIPSGE  179 (270)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~------~~vIgag-svV~~~~~I~~~~  179 (270)
                      +|.|..++|+++|.||+++.|..+..+..      +++|+.| ++|++++.+++++
T Consensus       372 ~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (429)
T PRK02862        372 GTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT  427 (429)
T ss_pred             CCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence            99999999999999999999965443332      5666666 5566666666654

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.96  E-value=6.2e-09  Score=95.02  Aligned_cols=101  Identities=11%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      +.+.+.++|++++.| .++.|+..|.|+++|.|.    +.+|+.+|.|+++|.|.. ..     -.+++|++++.|+.++
T Consensus       249 ~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~----~~~i~~~~~Ig~~~~i~~-~~-----i~~s~i~~~~~i~~~~  317 (353)
T TIGR01208       249 SKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE----NSYIGPYTSIGEGVVIRD-AE-----VEHSIVLDESVIEGVQ  317 (353)
T ss_pred             CEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc----CcEECCCCEECCCCEEee-eE-----EEeeEEcCCCEEcCCc
Confidence            344455555555555 444455555556666554    135556666666666541 10     1278899999998874


Q ss_pred             -EEeceEECCCcEECCccEECC--CcEECCCcEEC
Q 024224          133 -VLHGCTVEDEAFVGMGATLLD--GVVVERHGMVA  164 (270)
Q Consensus       133 -~i~~~~Ig~~~~Ig~~a~I~~--gv~Ig~~~vIg  164 (270)
                       .+.+++||+++.|+.++.+..  +..+|+++.|+
T Consensus       318 ~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~  352 (353)
T TIGR01208       318 ARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE  352 (353)
T ss_pred             ceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence             788888999999988888864  35677777654

Alternate name: dTDP-D-glucose synthase

>PLN02357 serine acetyltransferase

Probab=98.92  E-value=2.1e-08  Score=90.33  Aligned_cols=68  Identities=24%  Similarity=0.323  Sum_probs=50.0

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ++||++|.|..+|+|.+.... . ..+.++||++|+||.++.| .+++||+++.||++++|..+  |.+++++
T Consensus       253 avIGdnV~I~~gVtIGg~g~~-~-g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~d--VP~~~~v  321 (360)
T PLN02357        253 AVVGNNVSILHNVTLGGTGKQ-S-GDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD--VPPRTTA  321 (360)
T ss_pred             CEECCCCEEeCCceecCcccc-C-CccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcc--cCCCcEE
Confidence            456677777777777643211 1 1246899999999999966 66999999999999999875  5555544

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.91  E-value=1.1e-08  Score=96.01  Aligned_cols=100  Identities=21%  Similarity=0.394  Sum_probs=63.8

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECC---------------C---CEECCCCEEEcCCCCCCC
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGS---------------G---TNIQDNSLVHVAKSNLSG  115 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~---------------~---~~I~~~~~I~~~~~~~~~  115 (270)
                      .|++++.|+ ++.|. ++.||++|.|+++|.|.   ..+.+|.               +   +.|+++|.|.        
T Consensus       317 ~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~---~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------  383 (436)
T PLN02241        317 IISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIE---DTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIR--------  383 (436)
T ss_pred             EEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEE---EeEEECCCccccccccccccccCCcceEECCCCEEc--------
Confidence            355555555 55553 45677777777777776   2355563               2   2677777775        


Q ss_pred             CccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCC-cEECCCcEECCCCee
Q 024224          116 KVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVERHGMVAAGSLV  169 (270)
Q Consensus       116 ~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~g-v~Ig~~~vIgagsvV  169 (270)
                         +++|+++|+|++++.+.+ .-+.+...+|.++.+..| |.||+++.|.+||+|
T Consensus       384 ---~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  436 (436)
T PLN02241        384 ---NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI  436 (436)
T ss_pred             ---ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence               577888888888887753 344444455555555555 578888888877764

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.84  E-value=3.7e-08  Score=90.76  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=63.6

Q ss_pred             cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcE
Q 024224           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF  144 (270)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~  144 (270)
                      ..+.....+...++|++++.|.    +..||++|.|+.  .+.           .++||++|.|+++|.|.+++|+++|.
T Consensus       271 ~~~~~~~~~~~~~~i~~~~~i~----~~~Ig~~~~I~~--~v~-----------~s~ig~~~~I~~~~~i~~svi~~~~~  333 (380)
T PRK05293        271 WRIYSVNPNLPPQYIAENAKVK----NSLVVEGCVVYG--TVE-----------HSVLFQGVQVGEGSVVKDSVIMPGAK  333 (380)
T ss_pred             CceecCCcCCCCCEECCCCEEe----cCEECCCCEEcc--eec-----------ceEEcCCCEECCCCEEECCEEeCCCE
Confidence            3443444444556666666663    235666666642  232           68999999999999999999999999


Q ss_pred             ECCccEECCCcEECCCcEECCCCeecCC
Q 024224          145 VGMGATLLDGVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       145 Ig~~a~I~~gv~Ig~~~vIgagsvV~~~  172 (270)
                      |+++|.|. ++.|++++.|++++.+..+
T Consensus       334 i~~~~~i~-~~ii~~~~~i~~~~~i~~~  360 (380)
T PRK05293        334 IGENVVIE-RAIIGENAVIGDGVIIGGG  360 (380)
T ss_pred             ECCCeEEe-EEEECCCCEECCCCEEcCC
Confidence            99998885 4777777777777776654

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.9e-08  Score=86.29  Aligned_cols=69  Identities=26%  Similarity=0.338  Sum_probs=45.4

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      +.|++++.++|.|.|++++.||.++.|++|++|+.    .+|-++|.|.+|+++.           +++||-.+.||..+
T Consensus       289 VyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~----sIIl~d~ei~enavVl-----------~sIigw~s~iGrWa  353 (407)
T KOG1460|consen  289 VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE----SIILDDAEIEENAVVL-----------HSIIGWKSSIGRWA  353 (407)
T ss_pred             eEEcCcceeCCccccCCCceecCCceecCCceeee----eeeccCcEeeccceEE-----------eeeeccccccccee
Confidence            45666666666666666677777777777777662    3666777777777665           56677666666666


Q ss_pred             EEec
Q 024224          133 VLHG  136 (270)
Q Consensus       133 ~i~~  136 (270)
                      .+.+
T Consensus       354 RVe~  357 (407)
T KOG1460|consen  354 RVEG  357 (407)
T ss_pred             eecc
Confidence            5544

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.77  E-value=5.1e-08  Score=88.32  Aligned_cols=96  Identities=23%  Similarity=0.422  Sum_probs=78.3

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      .+..+...|.......|.+.+..+..+ .++.|..||+|.|...+.+|+.++.|+.+++|.           +++|..+|
T Consensus       268 ~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~-----------~svim~~~  335 (393)
T COG0448         268 NLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE-----------NSVIMPDV  335 (393)
T ss_pred             cccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE-----------eeEEeCCc
Confidence            344555566666777788887766664 567777888887765678999999999999998           79999999


Q ss_pred             EECcCcEEeceEECCCcEECCccEECCC
Q 024224          127 TVGHSAVLHGCTVEDEAFVGMGATLLDG  154 (270)
Q Consensus       127 ~I~~~~~i~~~~Ig~~~~Ig~~a~I~~g  154 (270)
                      .||.+|.|..++|.++|.|++|+.|...
T Consensus       336 ~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         336 EIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             EECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence            9999999999999999999999998765

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.77  E-value=6.7e-08  Score=88.41  Aligned_cols=64  Identities=17%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             EECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCee
Q 024224           93 SVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV  169 (270)
Q Consensus        93 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV  169 (270)
                      .||++|.|+.+ .+.           ++.||++|.|+++|.+.+++|++++.||.++.| .+++||+++.|+++++|
T Consensus       296 ~ig~~~~I~~~-~v~-----------~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i  359 (361)
T TIGR02091       296 LVSEGCIISGA-TVS-----------HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVI  359 (361)
T ss_pred             EECCCCEECCC-EEE-----------ccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCEe
Confidence            45555666554 443           456666666666666666677777777766666 35666666666666655

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.74  E-value=1.1e-07  Score=79.13  Aligned_cols=97  Identities=22%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-eEECCCcEECCc-cEECCCcEECCCcEECCCC
Q 024224           90 NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG-ATLLDGVVVERHGMVAAGS  167 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~-a~I~~gv~Ig~~~vIgags  167 (270)
                      ..+.+|++|.++.++.+..        ....+||+++.+++++.+.. ...++...-..+ ......++||++|+||+++
T Consensus        66 ~~~~iG~~~~i~~~~~~~~--------~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a  137 (190)
T COG0110          66 KNLTIGDLCFIGVNVVILV--------GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGA  137 (190)
T ss_pred             cceEECCeeEEcCCcEEEe--------cCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCcc
Confidence            3456666666666666542        22456666666666665543 222222222121 2223345666666666666


Q ss_pred             eecCCCccCCCcEEeecCceeccCCCHH
Q 024224          168 LVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       168 vV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      +|.++++|+++++++ +.+.+.++++++
T Consensus       138 ~IlpGV~IG~gavig-agsVVtkdvp~~  164 (190)
T COG0110         138 VILPGVTIGEGAVIG-AGSVVTKDVPPY  164 (190)
T ss_pred             EECCCEEECCCcEEe-eCCEEeCccCCC
Confidence            666665666665443 355555555544

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.4e-07  Score=82.07  Aligned_cols=72  Identities=18%  Similarity=0.304  Sum_probs=54.0

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .|-.+++|+|++.+.+.++||.|+               .||.++.||+|+.|.           .++|-+++.|.+++.
T Consensus       284 ~IigdVyIhPsakvhptAkiGPNV---------------SIga~vrvg~GvRl~-----------~sIIl~d~ei~enav  337 (407)
T KOG1460|consen  284 EIIGDVYIHPSAKVHPTAKIGPNV---------------SIGANVRVGPGVRLR-----------ESIILDDAEIEENAV  337 (407)
T ss_pred             eEEeeeEEcCcceeCCccccCCCc---------------eecCCceecCCceee-----------eeeeccCcEeeccce
Confidence            455555566655555555555554               556777777888887           688889999999999


Q ss_pred             EeceEECCCcEECCccEE
Q 024224          134 LHGCTVEDEAFVGMGATL  151 (270)
Q Consensus       134 i~~~~Ig~~~~Ig~~a~I  151 (270)
                      +-.++||.++.||.-+.|
T Consensus       338 Vl~sIigw~s~iGrWaRV  355 (407)
T KOG1460|consen  338 VLHSIIGWKSSIGRWARV  355 (407)
T ss_pred             EEeeeecccccccceeee
Confidence            999999999999977776

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.65  E-value=1.6e-07  Score=87.41  Aligned_cols=68  Identities=25%  Similarity=0.352  Sum_probs=37.0

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      ++.||++|.|+ ++.|..    .+||++|.|+++|.|.           +++|+++|.|++++.|.+++|+++|.|++++
T Consensus       315 ~~~ig~~~~I~-~~~i~~----svIg~~~~I~~~~~i~-----------~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~  378 (407)
T PRK00844        315 DSLVSAGSIIS-GATVRN----SVLSPNVVVESGAEVE-----------DSVLMDGVRIGRGAVVRRAILDKNVVVPPGA  378 (407)
T ss_pred             eCEEcCCCEEC-CeeeEc----CEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCCCEECCCC
Confidence            45555555554 555541    3556666666666554           4555556555555555555555555555555


Q ss_pred             EECC
Q 024224          150 TLLD  153 (270)
Q Consensus       150 ~I~~  153 (270)
                      .|..
T Consensus       379 ~i~~  382 (407)
T PRK00844        379 TIGV  382 (407)
T ss_pred             EECC
Confidence            5533

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.65  E-value=6e-08  Score=80.95  Aligned_cols=104  Identities=23%  Similarity=0.368  Sum_probs=64.9

Q ss_pred             CceeCCCCEECCCc--EEecCeEECCCCEEcc--CCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           52 APAVDKDAFVAPSA--SIIGDVQVGRGSSIWY--GCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        52 ~~~i~~~~~I~~~~--~i~~~v~IG~~~~I~~--~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      ...++-+++|+|..  .|.+.+.||++..+-.  +.+|. +  ..+||++|.|.+++++.+..+ ..+..|+ .||++|+
T Consensus       134 ~lal~~q~ris~~~gvdihpaa~ig~gilldhatgvvig-e--TAvvg~~vSilH~Vtlggtgk-~~gdrhP-~Igd~vl  208 (269)
T KOG4750|consen  134 ILALGLQVRISPNFGVDIHPAAKIGKGILLDHATGVVIG-E--TAVVGDNVSILHPVTLGGTGK-GSGDRHP-KIGDNVL  208 (269)
T ss_pred             eEEEeecceecccccccccchhhcccceeeccccceeec-c--eeEeccceeeecceeeccccc-cccccCC-cccCCeE
Confidence            33455555555543  3344455555544422  22222 1  245666666666666654333 2334566 9999999


Q ss_pred             ECcCcEE-eceEECCCcEECCccEECCCcEECCCcE
Q 024224          128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGM  162 (270)
Q Consensus       128 I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v  162 (270)
                      ||.+++| .++.||+++.||+|++|..+  |.++.+
T Consensus       209 iGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~~  242 (269)
T KOG4750|consen  209 IGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNTL  242 (269)
T ss_pred             EccccEEeCCeeECCCcEEeccceEEec--cCCCce
Confidence            9999955 66999999999999999875  444443

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.63  E-value=2.2e-07  Score=85.01  Aligned_cols=82  Identities=22%  Similarity=0.308  Sum_probs=65.1

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .+.+.++|++.+.+ +++.||++|.|+++ .+.    +..||++|.|+++|.|.           +++|++++.|++++.
T Consensus       279 ~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~----~s~i~~~~~I~~~~~i~-----------~sii~~~~~v~~~~~  341 (361)
T TIGR02091       279 FLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS----HSVLGIRVRIGSGSTVE-----------DSVIMGDVGIGRGAV  341 (361)
T ss_pred             CCCCceEecCCCEE-ECCEECCCCEECCC-EEE----ccEECCCCEECCCCEEe-----------eeEEeCCCEECCCCE
Confidence            34556677777644 56777888888765 554    35899999999999997           799999999999999


Q ss_pred             EeceEECCCcEECCccEEC
Q 024224          134 LHGCTVEDEAFVGMGATLL  152 (270)
Q Consensus       134 i~~~~Ig~~~~Ig~~a~I~  152 (270)
                      +++++||+++.|+.++.|.
T Consensus       342 l~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       342 IRNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             EeeeEECCCCEECCCCEeC
Confidence            9988888888888887764

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.61  E-value=1.8e-07  Score=85.87  Aligned_cols=66  Identities=21%  Similarity=0.432  Sum_probs=49.4

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                      +.||++|.|+  ..+.           +++|+++|.|+.+|.+.+++|+++|.|++++.+. ++.||++++|++++.+..
T Consensus       290 ~~Ig~~~~i~--~~v~-----------~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~~~  355 (369)
T TIGR02092       290 SLVANGCIIE--GKVE-----------NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKIAG  355 (369)
T ss_pred             eEEcCCCEEe--eEEe-----------CCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECCCCEeCC
Confidence            3566677775  2343           5778888888888888888888888888888874 477888888887777744

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=9.8e-08  Score=85.61  Aligned_cols=75  Identities=24%  Similarity=0.435  Sum_probs=63.1

Q ss_pred             ceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224           91 SISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR  170 (270)
Q Consensus        91 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~  170 (270)
                      ...+|++|.|++++.|.           .++||++|.||+.+++.++.|-+++.||.|+.| +++.||.+|.||+||.+.
T Consensus       334 d~iv~~~t~i~~~s~ik-----------~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~  401 (433)
T KOG1462|consen  334 DSIVGDNTQIGENSNIK-----------RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLK  401 (433)
T ss_pred             hhccCCCceecccceee-----------eeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeee
Confidence            35778888888888887           799999999999999999999999999999998 469999999999988875


Q ss_pred             CCCccCCC
Q 024224          171 QNTRIPSG  178 (270)
Q Consensus       171 ~~~~I~~~  178 (270)
                      . +.|+++
T Consensus       402 n-C~Ig~~  408 (433)
T KOG1462|consen  402 N-CIIGPG  408 (433)
T ss_pred             e-eEecCC
Confidence            4 344444

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.57  E-value=4.2e-07  Score=85.25  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=14.6

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR   86 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~   86 (270)
                      |++++.| +++.|. ++.||.+|.|++++.|.
T Consensus       311 ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~  340 (429)
T PRK02862        311 IAEGCII-KNCSIH-HSVLGIRSRIESGCTIE  340 (429)
T ss_pred             ECCCCEE-CCcEEE-EEEEeCCcEECCCCEEE
Confidence            4444444 333332 34555555555555554

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.57  E-value=1.1e-07  Score=74.59  Aligned_cols=112  Identities=17%  Similarity=0.237  Sum_probs=87.5

Q ss_pred             cCCCceeCCCCEECCCcEEe---cCeEECCCCEEccCCEEEc----------CCCceEECCCCEECCCCEEEcCCCCCCC
Q 024224           49 FDKAPAVDKDAFVAPSASII---GDVQVGRGSSIWYGCVLRG----------DVNSISVGSGTNIQDNSLVHVAKSNLSG  115 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~----------~~~~v~IG~~~~I~~~~~I~~~~~~~~~  115 (270)
                      +...+.|++++.+||.+.+.   |.++||+|+.|.+.++|..          +..+..||.+..+.-+|...        
T Consensus        23 irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~--------   94 (190)
T KOG4042|consen   23 IRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSS--------   94 (190)
T ss_pred             cccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhh--------
Confidence            34567899999999999885   5799999999999998863          22368899998888777765        


Q ss_pred             CccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224          116 KVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus       116 ~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                         -..+||+..|+..+.+++ +++-++|.+|+.+.+...-.+.++++|-+-.-+.+
T Consensus        95 ---A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R  148 (190)
T KOG4042|consen   95 ---AKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSR  148 (190)
T ss_pred             ---hhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccc
Confidence               356788888877776654 78888888888888888888888888854444433

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.55  E-value=3.7e-07  Score=85.50  Aligned_cols=50  Identities=16%  Similarity=0.265  Sum_probs=22.2

Q ss_pred             eEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224          120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR  170 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~  170 (270)
                      ++||++|.|+.+|.+.+|+|+++|.||.+|.| .++.|+++|.|+++++|.
T Consensus       344 svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~  393 (425)
T PRK00725        344 SVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIG  393 (425)
T ss_pred             CEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEEC
Confidence            44444444444444444444444444444444 234444444444444443

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.54  E-value=1.3e-07  Score=83.35  Aligned_cols=99  Identities=20%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             EECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEE
Q 024224           60 FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTV  139 (270)
Q Consensus        60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~I  139 (270)
                      ...|++.+.+++.+..-..++.+|.|.+   +++||.+|.|++++.|.           ++++..+++++..+.+..+.+
T Consensus       254 r~~p~~~i~~nvlvd~~~~iG~~C~Ig~---~vvIG~r~~i~~gV~l~-----------~s~il~~~~~~~~s~i~s~iv  319 (371)
T KOG1322|consen  254 RLLPGSKIVGNVLVDSIASIGENCSIGP---NVVIGPRVRIEDGVRLQ-----------DSTILGADYYETHSEISSSIV  319 (371)
T ss_pred             cccCCccccccEeeccccccCCccEECC---CceECCCcEecCceEEE-----------eeEEEccceechhHHHHhhhc
Confidence            3334444444444444444444444442   24567888888888887           677778888888888888888


Q ss_pred             CCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224          140 EDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       140 g~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~  172 (270)
                      |-++.||.++.|-..++||++++|..-..|..+
T Consensus       320 g~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g  352 (371)
T KOG1322|consen  320 GWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG  352 (371)
T ss_pred             cccccccCceEEecccEeccceEEecccccccc
Confidence            888888888888887888888777655555444

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.52  E-value=5.2e-07  Score=84.04  Aligned_cols=68  Identities=21%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                      +.||++|.|+ ++.|.           +++||++|.|+++|.+.+++|+++|.|+.+|.|. ++.|++++.|+++++|..
T Consensus       316 ~~ig~~~~I~-~~~i~-----------~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        316 SLVSAGSIIS-GATVR-----------NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV  382 (407)
T ss_pred             CEEcCCCEEC-CeeeE-----------cCEECCCCEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence            5778888887 88886           5899999999999999999999999999999995 589999999999998877


Q ss_pred             C
Q 024224          172 N  172 (270)
Q Consensus       172 ~  172 (270)
                      +
T Consensus       383 ~  383 (407)
T PRK00844        383 D  383 (407)
T ss_pred             C
Confidence            4

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.50  E-value=1.4e-07  Score=56.04  Aligned_cols=33  Identities=24%  Similarity=0.600  Sum_probs=22.9

Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                      ++||++|+||++|.+  +++||++|+|++|++|++
T Consensus         2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred             eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence            578888888888888  588888888888888764

...

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.47  E-value=1.1e-06  Score=80.64  Aligned_cols=79  Identities=13%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224           57 KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG  136 (270)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~  136 (270)
                      +.++|++++.| +++.||++|.|+  +.+    .+.+||++|.|+++|.|.           +++|++++.|+.++.+.+
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v----~~s~i~~~~~I~~~~~i~-----------~sii~~~~~I~~~~~i~~  338 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIE--GKV----ENSILSRGVHVGKDALIK-----------NCIIMQRTVIGEGAHLEN  338 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEe--eEE----eCCEECCCCEECCCCEEE-----------eeEEeCCCEECCCCEEEE
Confidence            44555555554 344455555553  123    246899999999999997           789999999999999999


Q ss_pred             eEECCCcEECCccEECC
Q 024224          137 CTVEDEAFVGMGATLLD  153 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~  153 (270)
                      ++||+++.|++++.+.+
T Consensus       339 ~ii~~~~~v~~~~~~~~  355 (369)
T TIGR02092       339 VIIDKDVVIEPNVKIAG  355 (369)
T ss_pred             EEECCCCEECCCCEeCC
Confidence            99999999888888744

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.46  E-value=7.9e-07  Score=83.30  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=59.1

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      ++.||++|.| .+|.|.    +.+||++|.|+++|.|.           +++|+++|.|++++.|.+|+|+++|.|++++
T Consensus       327 ~s~i~~~~~i-~~~~i~----~svi~~~~~I~~~~~i~-----------~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~  390 (425)
T PRK00725        327 NSLVSGGCII-SGAVVR----RSVLFSRVRVNSFSNVE-----------DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGM  390 (425)
T ss_pred             eCEEcCCcEE-cCcccc----CCEECCCCEECCCCEEe-----------eeEEcCCCEECCCCEEeeEEECCCCEECCCC
Confidence            5677777777 677765    36899999999999997           7999999999999999999999888888887


Q ss_pred             EECCCcE
Q 024224          150 TLLDGVV  156 (270)
Q Consensus       150 ~I~~gv~  156 (270)
                      .|.+++.
T Consensus       391 ~i~~~~~  397 (425)
T PRK00725        391 VIGEDPE  397 (425)
T ss_pred             EECCCCC
Confidence            7765543

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.22  E-value=9e-07  Score=53.20  Aligned_cols=34  Identities=21%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR  170 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~  170 (270)
                      +.||++|+|++++.|.+++.||++++|+++++|.
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence            5778888888888888888888888888887765

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.16  E-value=2.7e-06  Score=50.56  Aligned_cols=31  Identities=35%  Similarity=0.720  Sum_probs=17.3

Q ss_pred             eEECCCcEECcCcEEeceEECCCcEECCccEE
Q 024224          120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATL  151 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I  151 (270)
                      +.||++|+|++++.+ ++.|||+|.|++|++|
T Consensus         2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I   32 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI   32 (34)
T ss_dssp             EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred             eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence            456666666666665 5667777777776665

...

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.94  E-value=3.7e-05  Score=70.02  Aligned_cols=53  Identities=15%  Similarity=0.396  Sum_probs=46.3

Q ss_pred             CeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224          119 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~  172 (270)
                      +++|+.++.|+.+++|..|+|-.+|.||.||.|. ++.|.++|+|+.|.++..+
T Consensus       311 nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~-~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         311 NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR-RAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE-EEEeCCCcEeCCCcEEcCC
Confidence            7999999999999999999999999999999985 4778888888777777765

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.92  E-value=0.00018  Score=60.74  Aligned_cols=116  Identities=20%  Similarity=0.298  Sum_probs=60.9

Q ss_pred             eCCCCEECC-CcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           55 VDKDAFVAP-SASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        55 i~~~~~I~~-~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      +-+++.+.. ..++.+++.||+++.+..+          ++|+...+++++.|.+           ..++.++.|..+|.
T Consensus         6 vPp~Tr~e~~~ivv~gdViIG~nS~l~~~----------V~g~~iivge~v~i~G-----------diva~diridmw~k   64 (277)
T COG4801           6 VPPNTRVEEAIIVVKGDVIIGKNSMLKYG----------VVGEEIIVGERVRIYG-----------DIVAKDIRIDMWCK   64 (277)
T ss_pred             cCCCCceeeeeEEEeccEEEcccceeeee----------eeeeeEEeccCcEEee-----------eEEecceeeeeeeE
Confidence            445555532 3455566777777766544          4567777777777763           33334444444443


Q ss_pred             Eec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          134 LHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       134 i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                      +.+ +..++++.||..+.|.+..++...--||+...+..+ -+..+-++.-+|-.++.-+
T Consensus        65 v~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Iegg-fva~g~Ivirnpvpvl~fl  123 (277)
T COG4801          65 VTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGG-FVAKGWIVIRNPVPVLEFL  123 (277)
T ss_pred             eeccEEEcCceEEeccceeeeeEEEecccccccceEEecC-eeecceEEEcCCccEEEEE
Confidence            333 445555555555555544444433334433333333 1233346666777766544

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=97.90  E-value=1.9e-05  Score=69.84  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=14.5

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVL   85 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I   85 (270)
                      .+-.++.+.+.+.++.+|.||.|+.||++++|
T Consensus       260 ~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i  291 (371)
T KOG1322|consen  260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRI  291 (371)
T ss_pred             cccccEeeccccccCCccEECCCceECCCcEe
Confidence            34444444444444444444444444444443

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.70  E-value=4.3e-05  Score=45.73  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=14.2

Q ss_pred             EECCCCEEccCCEEEcCCCceEECCCCEECCCCEE
Q 024224           72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLV  106 (270)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I  106 (270)
                      .||+++.|++++.|.+   .+.||++|.|+++++|
T Consensus         3 ~Ig~~~~i~~~~~i~~---~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGG---GVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEET---TEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecC---CCEECCCCEEcCCCEE
Confidence            3444444444444442   2444455555544444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.42  E-value=0.00086  Score=56.68  Aligned_cols=41  Identities=7%  Similarity=-0.015  Sum_probs=16.2

Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      |.|+-+|.+..|+.+.++..||+++.|....+|..|-.+++
T Consensus        57 iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~   97 (277)
T COG4801          57 IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA   97 (277)
T ss_pred             eeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence            33333333333333333444444444443333333333333

>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F

Probab=96.75  E-value=0.0031  Score=45.35  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             cCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          175 IPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       175 I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      |||++++.|+||++. .++.--++.---..+++..+.++|+..+...+.-.++..++...... +++..+...|+++
T Consensus         2 VpPf~~~~G~~a~~~-GlN~vGLrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~-~~~v~~~~~Fi~~   76 (83)
T PF13720_consen    2 VPPFMLVAGNPARIR-GLNLVGLRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD-SPEVREIVDFIRN   76 (83)
T ss_dssp             B-TTEEEETTTTEEE-EE-HHHHHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS-CHHHHHHHHHHHH
T ss_pred             CCCeEEecCCccEEe-eeeHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC-CHHHHHHHHHHHh
Confidence            999999999999865 22222222211123455566677887887777777777777775553 6778888777763

...

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=90.79  E-value=0.61  Score=43.72  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCC
Q 024224          119 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERH  160 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~  160 (270)
                      ++.+..++.++++++|..|.|+.++.||.+|+|. |+.+.+.
T Consensus       284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~~  324 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINSW  324 (414)
T ss_pred             EeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCccccc
Confidence            5677777777777777777777777777777775 3544443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=86.02  E-value=2.1  Score=40.12  Aligned_cols=41  Identities=12%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCc
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEA  143 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~  143 (270)
                      ..+..++.++++++|.           ++.++.++.||.+|+|.++.+.+..
T Consensus       285 Sil~~~~~vg~~svIe-----------~s~l~~~~~IG~~cIisGv~~~~~~  325 (414)
T PF07959_consen  285 SILEGGVSVGPGSVIE-----------HSHLGGPWSIGSNCIISGVDINSWS  325 (414)
T ss_pred             eEecCCceECCCCEEE-----------eeecCCCCEECCCCEEECCcccccc
Confidence            4677778888888876           6788888888888888887666553

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=80.44  E-value=9.3  Score=27.97  Aligned_cols=44  Identities=20%  Similarity=0.260  Sum_probs=24.2

Q ss_pred             CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEE
Q 024224           59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVH  107 (270)
Q Consensus        59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~  107 (270)
                      +.|.+++.+.+++....+..+...  +.+   .+.......|+.++.+.
T Consensus         3 ~~I~~~~~i~G~i~~~~~v~i~G~--v~G---~i~~~g~v~i~~~~~v~   46 (101)
T PF04519_consen    3 TIIGKGTKIEGDISSDGDVRIDGR--VEG---NIKAEGKVKIGGNGEVK   46 (101)
T ss_pred             EEECCCCEEEEEEEECcEEEEEEE--EEE---EEEEceEEEEcCCCEEE
Confidence            466677777777766665555333  442   24443345555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
3ixc_A	191	Crystal Structure Of Hexapeptide Transferase Family		2e-43
3tio_A	183	Crystal Structures Of Yrda From Escherichia Coli, A		4e-34
3r3r_A	187	Structure Of The Yrda Ferripyochelin Binding Protei		5e-32
3r1w_A	189	Crystal Structure Of A Carbonic Anhydrase From A Cr		1e-31
1v3w_A	173	Structure Of Ferripyochelin Binding Protein From Py		4e-28
3vnp_A	183	Crystal Structure Of Hypothetical Protein (Gk2848)		2e-27
1xhd_A	173	X-Ray Crystal Structure Of Putative Acetyltransfera		2e-27
3ou9_A	213	Crystal Structure Of Gamma-Carbonic Anhydrase W19f		7e-10
3otz_A	213	Crystal Structure Of Gamma-Carbonic Anhydrase W19a		9e-10
1thj_A	214	Carbonic Anhydrase From Methanosarcina Length = 214		1e-09
1qrl_A	214	A Closer Look At The Active Site Of Gamma-Carbonic		1e-09
1qrf_A	213	A Closer Look At The Active Site Of Gamma-Carbonic		1e-09
1qq0_A	247	Cobalt Substituted Carbonic Anhydrase From Methanos		1e-09
3otm_A	212	Crystal Structures Of Wild-Type Gamma-Carbonic Anhy		1e-09
3oup_A	213	Crystal Structure Of The Gamma-Carbonic Anhydrase W		2e-09
3ow5_A	213	Crystal Structure Of The Y200a Mutant Of Gamma Carb		2e-09
3kwc_A	229	Oxidized, Active Structure Of The Beta-carboxysomal		1e-07
3kwd_A	213	Inactive Truncation Of The Beta-Carboxysomal Gamma-		1e-07
3ect_A	195	Crystal Structure Of The Hexapeptide-repeat Contain		3e-05
1ocx_A	182	E. Coli Maltose-O-Acetyltransferase Length = 182		2e-04

>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family Protein From Anaplasma Phagocytophilum Length = 191

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 5/161 (3%)
Query: 52  APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKS 111
           +P+VD  AF+A +A IIGDV +G+ +SIWYG VLRGDV+ I VG GTNIQDN++VH    
Sbjct: 33  SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHT--D 90
Query: 112 NLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171
           ++ G    T IG  VT+GHS +LH CT+ + AFVGMG+ ++D  V+E   M+AAGSL+ +
Sbjct: 91  SMHGD---TVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR 147
Query: 172 NTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212
              + SGE+W G PAKFLR +T+EEI ++ +SA NY  L++
Sbjct: 148 GKIVKSGELWAGRPAKFLRMMTEEEILYLQKSAENYIALSR 188

>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A Homologous Protein Of Gamma-Class Carbonic Anhydrase, Show Possible Allosteric Conformations Length = 183

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 50  DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
           D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV 
Sbjct: 9   DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 68
Query: 110 -KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168
            KS+ +    P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSL
Sbjct: 69  HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 128
Query: 169 VRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 207
           V QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct: 129 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 167

>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From Salmonella Enterica Length = 187

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 43  RTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQD 102
           R   N+F   P + +   +  S+ +IGDV++     IW   V+RGDVN +++G+ TNIQD
Sbjct: 9   RPYKNLF---PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQD 65
Query: 103 NSLVHV---AKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVER 159
            S++HV   + SN  G   P  IG++VTVGH  +LHGCT+ +   VGMG+ +LDG ++E 
Sbjct: 66  GSVLHVTHKSSSNPHGN--PLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIED 123
Query: 160 HGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 207
             M+ AGSLV Q+ R+ SG ++ G+P K +R L+D E + +  SA NY
Sbjct: 124 DVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNY 171

>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil Degrading Psychrophilic Library Length = 189

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 39  LSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGT 98
           L+  RT   I   +P + +  FV  S+ IIGDV++G   S+W   V+RGD++ I +G+ T
Sbjct: 9   LTSVRTYQGI---SPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGART 65
Query: 99  NIQDNSLVHVAK-SNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVV 157
           ++QD S++H+   S+ +    P  IGD+VT+GH A+LHGCT+ +   +GM + ++DG +V
Sbjct: 66  SVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIV 125
Query: 158 ERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 217
           E   +VAAG+ V     + SG V+ G PAK +R +T++E +F +  A NY  L   H AE
Sbjct: 126 EDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLAE 185

>pdb|1V3W|A Chain A, Structure Of Ferripyochelin Binding Protein From Pyrococcus Horikoshii Ot3 Length = 173

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 45  LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNS 104
           +  I  K P +   AFV  +A +IGDV +   +S+W   VLRGD+  I VG  +N+QDN 
Sbjct: 3   IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNV 62
Query: 105 LVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVA 164
            +H +         PT IG+ VT+GH+A++HG  V +   +G+ + +LDG  +  H ++ 
Sbjct: 63  SIHTSHG------YPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIG 116
Query: 165 AGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVH 214
           AG++V  N  IP   +  G P K +R+LT+EEI +  ++A  Y  LA+ H
Sbjct: 117 AGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKH 166

>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From Geobacillus Kaustophilus Length = 183

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 51  KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAK 110
           K P +   AF+A   +I GDV +G  +SIW+  V+RGDV    +G+  NIQDNS++H + 
Sbjct: 9   KTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSP 68
Query: 111 SNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
           +N      P  I D VTVGH  +LH   V   A +GMG+ +LD   +     + AGSLV 
Sbjct: 69  NN------PLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVP 122
Query: 171 QNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAA 216
              +IP   +  G PAK +R+LT+++I  + +    Y    Q + A
Sbjct: 123 PGKKIPPNTLALGRPAKVVRELTEDDIREMERIRREYVEKGQYYKA 168

>pdb|1XHD|A Chain A, X-Ray Crystal Structure Of Putative Acetyltransferase, Product Of Bc4754 Gene [bacillus Cereus] Length = 173

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 50  DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
           +K P +   AF+A   +I GDV VG  SSIW+  V+RGDV+   +G   N+QD   +H +
Sbjct: 10  EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQS 69
Query: 110 KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV 169
                    P  + D+VTVGH  +LH C ++ +A +G G+ +LDG  +     + AGSLV
Sbjct: 70  PQ------YPLILEDDVTVGHQVILHSCHIKKDALIGXGSIILDGAEIGEGAFIGAGSLV 123
Query: 170 RQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAA 216
            Q  +IP   +  G PAK +R+LT E+     +  T Y    Q + +
Sbjct: 124 SQGKKIPPNTLAFGRPAKVIRELTAEDRKDXERIRTQYVEKGQYYKS 170

>pdb|3OU9|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19f Mutant From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 17  TPFNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|3OTZ|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19a Mutant From Metanosarcina Thermophila Length = 213

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 17  TPANPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|1THJ|A Chain A, Carbonic Anhydrase From Methanosarcina Length = 214

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 18  TPWNPEPSAPVIDPTAYIDPEASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 77
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 78  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 137
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 138 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 196
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 197 EAVVYVN---VHLAEGYK 211

>pdb|1QRL|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic Anhydrases: High Resolution Crystallographic Studies Of The Carbonic Anhydrase From Methanosarcina Thermophila Length = 214

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 18  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 77
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 78  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 137
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 138 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 196
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 197 EAVVYVN---VHLAEGYK 211

>pdb|1QRF|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic Anhydrases: High Resolution Crystallographic Studies Of The Carbonic Anhydrase From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 17  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|1QQ0|A Chain A, Cobalt Substituted Carbonic Anhydrase From Methanosarcina Thermophila Length = 247

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 51  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 110
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 111 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 170
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 171 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 229
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 230 EAVVYVN---VHLAEGYK 244

>pdb|3OTM|A Chain A, Crystal Structures Of Wild-Type Gamma-Carbonic Anhydrase From Methanosarcina Thermophila Length = 212

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 16  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 75
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 76  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 135
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 136 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 194
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 195 EAVVYVN---VHLAEGYK 209

>pdb|3OUP|A Chain A, Crystal Structure Of The Gamma-Carbonic Anhydrase W19n Mutant From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 17  TPNNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SATNYSNLAQVHAAENAK 220
            A  Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|3OW5|A Chain A, Crystal Structure Of The Y200a Mutant Of Gamma Carbonic Anhydrase From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 27/199 (13%)
Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQD 102
           T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD
Sbjct: 17  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP-AKFLRKLTDEEIAFISQ 202
           A +      +  V+E     A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDD----YAY 191
Query: 203 SATNYSNLA-QVHAAENAK 220
           S TN + +A  VH AE  K
Sbjct: 192 SHTNEAVVAVNVHLAEGYK 210

>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal Gamma-carbonic Anhydrase, Ccmm Length = 229

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 53  PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISVGSGTNIQDNSLVHVAKS 111
           P +   A+V   +++IGDV++     I  G  +R D  +   +GS TNIQD  ++H  + 
Sbjct: 40  PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 112 NL----SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAG 166
                  G+     IGDNV++ H A++HG   + D  F+G  +T+ +  V    G V   
Sbjct: 100 GRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGA--GCVVMM 157
Query: 167 SLVRQNTRIPSGE 179
            ++ Q+  IP G+
Sbjct: 158 HVLIQDVEIPPGK 170

>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal Gamma-Carbonic Anhydrase, Ccmm, Form 1 Length = 213

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 53  PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISVGSGTNIQDNSLVHVAKS 111
           P +   A+V   +++IGDV++     I  G  +R D  +   +GS TNIQD  ++H  + 
Sbjct: 40  PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 112 NL----SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAG 166
                  G+     IGDNV++ H A++HG   + D  F+G  +T+ +  V    G V   
Sbjct: 100 GRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGA--GCVVMM 157
Query: 167 SLVRQNTRIPSGE 179
            ++ Q+  IP G+
Sbjct: 158 HVLIQDVEIPPGK 170

>pdb|3ECT|A Chain A, Crystal Structure Of The Hexapeptide-repeat Containing- Acetyltransferase Vca0836 From Vibrio Cholerae Length = 195

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 95  GSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCT---------------- 138
           G    I D++ ++     L G   P TIGD+V +G S   +  +                
Sbjct: 74  GKTIRIGDHTFINXNVVXLDGA--PITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICK 131
Query: 139 ---VEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD 194
              +ED+ ++G    +  GV +    +VAA S+V Q+  +P   + GG PA+ LR L D
Sbjct: 132 PIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLKD 188

>pdb|1OCX|A Chain A, E. Coli Maltose-O-Acetyltransferase Length = 182

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 34/167 (20%)
Query: 36  QEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIW--YGCVLRGDVNSIS 93
           +E   R + L ++F +      +A++ P+        +  G++ +  + CV+  DV  I 
Sbjct: 40  EEHTLRQQILADLFGQV----TEAYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIR 94
Query: 94  VGSGTNIQDNSLVHVAKSNL------SGKVL--PTTIGDNVTVGHSAVLHGCTVEDEAFV 145
           +G    +     ++ A   +      SG  L  P TIG+NV +G  AV++          
Sbjct: 95  IGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINP--------- 145
Query: 146 GMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192
             G T+ D VVV      A+G++V ++  +P   V GGNPA+ ++KL
Sbjct: 146 --GVTIGDNVVV------ASGAVVTKD--VPDNVVVGGNPARIIKKL 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	3e-97
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	2e-96
3r3r_A	187	Ferripyochelin binding protein; structural genomic	9e-95
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	7e-92
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	4e-84
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	1e-80
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	7e-73
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-25
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	2e-24
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	2e-22
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	1e-19
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	6e-19
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-06
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-16
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	2e-15
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	5e-13
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	7e-12
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	2e-11
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	4e-11
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	8e-11
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	7e-10
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	1e-09
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	1e-09
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	4e-09
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	5e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	5e-09
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	5e-08
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	6e-08
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	8e-08
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	2e-06
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	2e-06
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	3e-04
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	3e-06
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	5e-06
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	5e-06
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	6e-06
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	6e-06
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	8e-06
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	2e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-05
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	5e-05
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	1e-04
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	1e-04
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-04
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	3e-04
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	3e-04
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-04
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	9e-04

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189

 Score =  282 bits (723), Expect = 3e-97
 Identities = 67/178 (37%), Positives = 108/178 (60%), Gaps = 1/178 (0%)

Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDN 103
           ++      +P + +  FV  S+ IIGDV++G   S+W   V+RGD++ I +G+ T++QD 
Sbjct: 11  SVRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDG 70

Query: 104 SLVHVA-KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGM 162
           S++H+   S+ +    P  IGD+VT+GH A+LHGCT+ +   +GM + ++DG +VE   +
Sbjct: 71  SVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVI 130

Query: 163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAK 220
           VAAG+ V     + SG V+ G PAK +R +T++E +F +  A NY  L   H AE   
Sbjct: 131 VAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLAEGYD 188

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191

 Score =  279 bits (717), Expect = 2e-96
 Identities = 88/199 (44%), Positives = 123/199 (61%), Gaps = 11/199 (5%)

Query: 16  RETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGR 75
                 +  L  + QG    +E L  +         +P+VD  AF+A +A IIGDV +G+
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMREVLVPYA------GVSPSVDSTAFIAGNARIIGDVCIGK 56

Query: 76  GSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH 135
            +SIWYG VLRGDV+ I VG GTNIQDN++VH            T IG  VT+GHS +LH
Sbjct: 57  NASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHT-----DSMHGDTVIGKFVTIGHSCILH 111

Query: 136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE 195
            CT+ + AFVGMG+ ++D  V+E   M+AAGSL+ +   + SGE+W G PAKFLR +T+E
Sbjct: 112 ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEE 171

Query: 196 EIAFISQSATNYSNLAQVH 214
           EI ++ +SA NY  L++ +
Sbjct: 172 EILYLQKSAENYIALSRGY 190

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187

 Score =  276 bits (707), Expect = 9e-95
 Identities = 69/178 (38%), Positives = 109/178 (61%), Gaps = 1/178 (0%)

Query: 44  TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDN 103
           TL    +  P + +   +  S+ +IGDV++     IW   V+RGDVN +++G+ TNIQD 
Sbjct: 7   TLRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDG 66

Query: 104 SLVHVA-KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGM 162
           S++HV  KS+ +    P  IG++VTVGH  +LHGCT+ +   VGMG+ +LDG ++E   M
Sbjct: 67  SVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVM 126

Query: 163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAK 220
           + AGSLV Q+ R+ SG ++ G+P K +R L+D E + +  SA NY      + +++  
Sbjct: 127 IGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNYVKWKDDYLSQDNH 184

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A Length = 247

 Score =  270 bits (693), Expect = 7e-92
 Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 32/241 (13%)

Query: 4   LGRAVYTVGFWIRETGQALDRLGCRLQGNYY------FQEQLSRHR----TLMNIFDKAP 53
             + ++T+         AL   GC  +G           ++ S  R    T  N    AP
Sbjct: 3   FNKQIFTILI--LSLSLALAGSGCISEGAEDNVAQEITVDEFSNIRENPVTPWNPEPSAP 60

Query: 54  AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQDNSLVHVAKS- 111
            +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+QD  ++H  ++ 
Sbjct: 61  VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETI 120

Query: 112 ------------NLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVE 158
                        + GK     IG+NV++ H + +HG   V D+ F+GM A +    V  
Sbjct: 121 NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 180

Query: 159 ----RHGMVAAGSLVRQNTRIPSGEVWGGN-PAKFLRKLTDEEIAFISQSATNYSNLAQV 213
                    A G  +     IP+G V      A  L ++TD+     +  A  Y N+   
Sbjct: 181 NCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHLA 240

Query: 214 H 214
            
Sbjct: 241 E 241

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173

 Score =  248 bits (635), Expect = 4e-84
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 6/173 (3%)

Query: 45  LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNS 104
           +    +K P +   AF+A   +I GDV VG  SSIW+  V+RGDV+   +G   N+QD  
Sbjct: 5   IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQC 64

Query: 105 LVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVA 164
            +H +         P  + D+VTVGH  +LH C ++ +A +GMG+ +LDG  +     + 
Sbjct: 65  TLHQSPQ------YPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIG 118

Query: 165 AGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 217
           AGSLV Q  +IP   +  G PAK +R+LT E+   + +  T Y    Q + + 
Sbjct: 119 AGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYYKSL 171

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173

 Score =  239 bits (613), Expect = 1e-80
 Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 9/175 (5%)

Query: 46  MNIF---DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQD 102
           M I+    K P +   AFV  +A +IGDV +   +S+W   VLRGD+  I VG  +N+QD
Sbjct: 1   MAIYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQD 60

Query: 103 NSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGM 162
           N  +H +         PT IG+ VT+GH+A++HG  V +   +G+ + +LDG  +  H +
Sbjct: 61  NVSIHTSHGY------PTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVI 114

Query: 163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 217
           + AG++V  N  IP   +  G P K +R+LT+EEI +  ++A  Y  LA+ H   
Sbjct: 115 IGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKG 169

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score =  221 bits (564), Expect = 7e-73
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 13/201 (6%)

Query: 24  RLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGC 83
             G   +G++   +  +   T  +     P +   A+V   +++IGDV++     I  G 
Sbjct: 11  SSGLVPRGSHMAVQSYAAPPTPWSRDLAEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGT 70

Query: 84  VLRGDVNS-ISVGSGTNIQDNSLVHVAKSN----LSGKVLPTTIGDNVTVGHSAVLHG-C 137
            +R D  +   +GS TNIQD  ++H  +        G+     IGDNV++ H A++HG  
Sbjct: 71  SIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPA 130

Query: 138 TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ-----NTRIPSGEVW-GGNPAKFLRK 191
            + D  F+G  +T+ +   V    +V    L++         +PSG V      A  L  
Sbjct: 131 YIGDGCFIGFRSTVFNA-RVGAGCVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPN 189

Query: 192 LTDEEIAFISQSATNYSNLAQ 212
           + + +I F          L  
Sbjct: 190 VEESDIHFAQHVVGINEALLS 210

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 99.4 bits (248), Expect = 1e-25
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 6/142 (4%)

Query: 57  KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK 116
            +  +     + G V +G  S I     L G    I +    NI   ++V+ A  + SG 
Sbjct: 57  NNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGN 116

Query: 117 VLPTTIGDNVTVGHSAVLHGCTV-EDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI 175
            L   +G  +   +  V  G  + +    +G  + +   VV+     V A S+V+++  +
Sbjct: 117 AL---MGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES--L 171

Query: 176 PSGEVWGGNPAKFLRKLTDEEI 197
               ++ G P + ++    + +
Sbjct: 172 DDWYIYVGVPVRKIKARKRKIV 193

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 60  FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLP 119
            + PSA +   V++G G ++  G  +  D     +G    I   ++V             
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSW---IGDLAIINTGAVVDH----------D 147

Query: 120 TTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG 178
             +G    +G ++ L G  +V + AF+G+GA ++ GV +    +V AG +V ++  +P  
Sbjct: 148 CRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDS 205

Query: 179 EVWGGNPAKFLRK 191
            +  G PAK    
Sbjct: 206 VLAIGVPAKIKGD 218

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 95.4 bits (237), Expect = 2e-22
 Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS 114
               A V+  A I GD  +G    +     L        +G G+N Q+N  +  +     
Sbjct: 276 SASGASVSGYAVIKGDTVIGENVLVSQRAYLDN----AWMGKGSNAQENCYIINS----- 326

Query: 115 GKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVV----VERHGMVAAGSLVR 170
                  +  N    H   +    + D  F G  + L         +    +V   +++ 
Sbjct: 327 ------RLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIID 380

Query: 171 QNTR--IPSGE-VWG 182
                 IP+G  VWG
Sbjct: 381 LEEPLEIPAGHLVWG 395

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 22/137 (16%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLV-HVAKSNL 113
           + K A ++PSA +    +   G  I    V+        +  G  +  +S++ H      
Sbjct: 78  IHKSALISPSAIV----EENAGILIMPYVVINAKAK---IEKGVILNTSSVIEHECV--- 127

Query: 114 SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
                   IG+   V   A   G   +    F+G+ + +L  + +    ++  G+ + +N
Sbjct: 128 --------IGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN 179

Query: 173 TRIPSGEVWGGNPAKFL 189
                  V+ G PAK +
Sbjct: 180 --QDEKGVFVGVPAKRM 194

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 82.9 bits (205), Expect = 6e-19
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 34/161 (21%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---NSISVGSGTNIQDN-------- 103
           + ++A +     I GD  +G      +   +R +    N++ +G+ ++IQ +        
Sbjct: 73  IGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVN 132

Query: 104 --SLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-----------HGCTVEDEAFVGMGAT 150
             S V V +         + I D V +    VL            G T+E  A +   + 
Sbjct: 133 IHSNVFVGEK--------SIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSV 184

Query: 151 LLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK 191
           +L G+ +    +V AG++V ++  +P   V  GNPA+ +  
Sbjct: 185 VLPGIHINEDALVGAGAVVTKD--VPKETVVVGNPAREICS 223

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 60  FVAPSASIIGDVQVGRGSSIWYGCVLRGDV---NSISVGSGTNIQDNSL----VHVAKSN 112
            ++ SA I   V +G   +I     +       +++ +  G+ I   S+    +    ++
Sbjct: 4   NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYND 63

Query: 113 LSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171
              K  P  IG+N  +    V++    + D    G   T+ +   +  +  +   S ++ 
Sbjct: 64  RINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQH 123

Query: 172 NTRI 175
           +  I
Sbjct: 124 HVYI 127

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 75.0 bits (184), Expect = 1e-16
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 49/173 (28%)

Query: 57  KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK 116
             A + P+A +    ++G  S IW+   + G      +G G ++  N  V         +
Sbjct: 2   HMATIHPTAIVDEGARIGAHSRIWHWVHICGGA---EIGEGCSLGQNVFVG-------NR 51

Query: 117 VLPTTIGDNVTVGHSAVLHG----------------------------------CTVEDE 142
           V    IG+ V + ++  ++                                     V   
Sbjct: 52  V---RIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQG 108

Query: 143 AFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE 195
           A +G   T++ G  + R+  V AG++V ++  +P   +  G PA+ +  ++  
Sbjct: 109 ATLGANCTVVCGATIGRYAFVGAGAVVNKD--VPDFALVVGVPARQIGWMSRH 159

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 27/174 (15%)

Query: 28  RLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG 87
             +    +  +  R  + + + D        A + P A I   V++G  + I     +  
Sbjct: 64  NSKYIVDYVVENDRRNSAIPMLDL---KGIKARIEPGAIIRDHVEIGDNAVIMMNATINI 120

Query: 88  DVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGC---------T 138
                 +G G+ I  N+++        G+    T+G N  VG  AVL G           
Sbjct: 121 GA---VIGEGSMIDMNAVL-------GGRA---TVGKNCHVGAGAVLAGVIEPPSAKPVI 167

Query: 139 VEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192
           VED+  +G    +L+GV V +  +VAAG++V +   +P   V  G PA+ ++++
Sbjct: 168 VEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTE--DVPPYTVVAGTPARVIKEI 219

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 65.3 bits (159), Expect = 5e-13
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 26/155 (16%)

Query: 56  DKDAFVAPSASIIGDVQVGRGSSIWYGCVL--RGDVNSISVGSGT---NIQDNSLVHVAK 110
           D   ++ P    +  + +G   SI  G V    G+    S    T     QDN     A+
Sbjct: 44  DCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADAR 103

Query: 111 SNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
              +     T IG +V                 ++G  A ++ GV +    ++A+ S+V 
Sbjct: 104 DGFTRS-GDTIIGHDV-----------------WIGTEAMIMPGVKIGHGAIIASRSVVT 145

Query: 171 QNTRIPSGEVWGGNPAKFLRK-LTDEEIAFISQSA 204
           ++  +   EV G NPAK ++   +D EIA + + A
Sbjct: 146 KD--VAPYEVVGSNPAKHIKFRFSDVEIAMLLEMA 178

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 32/185 (17%)

Query: 58  DAFVAPSASIIGDVQVGRGSSIWYGCVL-------RGDVNSISVGSGTNIQDNSLVHVAK 110
           D  +     I   + +GR  SI  G          R D ++          +  +  +  
Sbjct: 53  DQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKD 112

Query: 111 SNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
             L G      IG++V                 ++G   T++ GV +    ++AA ++V 
Sbjct: 113 LPLKG---DIEIGNDV-----------------WIGRDVTIMPGVKIGDGAIIAAEAVVT 152

Query: 171 QNTRIPSGEVWGGNPAKFLRK-LTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEK 229
           +N  +    + GGNP KF+RK  +D  I         + NL      EN       + E 
Sbjct: 153 KN--VAPYSIVGGNPLKFIRKRFSDGVIEEWLALQ--WWNLDMKIINENLPFIINGDIEM 208

Query: 230 VLRKK 234
           + RK+
Sbjct: 209 LKRKR 213

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 24/148 (16%)

Query: 56  DKDAFVAPSASIIGDVQVGRGSSIWYGCVL--RGDVNSISVGSGT---NIQDNSLVHVAK 110
           D   ++ P    +  + +G   SI  G      G+    +  + T   +           
Sbjct: 42  DCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGA 101

Query: 111 SNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
            N       T IG  V                 ++G  A  + GV V    ++ + +LV 
Sbjct: 102 VNGYQPAGDTLIGHEV-----------------WIGTEAMFMPGVRVGHGAIIGSRALVT 144

Query: 171 QNTRIPSGEVWGGNPAKFLRKLTDEEIA 198
            +  +    + GGNPA+ +RK   +   
Sbjct: 145 GD--VEPYAIVGGNPARTIRKRFSDGDI 170

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 39/182 (21%)

Query: 32  NYYFQEQLSRHRTLMNIF---DKAPAVDKDAFVAPSASIIGD----VQVGRGSSIWYGCV 84
           N    E     R L  IF   +    + K++ +     I+      V +GR ++I  G  
Sbjct: 62  NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGD--IVATKGSKVIIGRRTTIGAGFE 119

Query: 85  LRGDVNSISVGSGTNIQDN---------SLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH 135
           +  D  ++++G    I  +          +  +             I   V         
Sbjct: 120 VVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYV--------- 170

Query: 136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTR-IPSGEVWGGNPAKFLRKLTD 194
                   +VG   +++ GV V    ++  GS+V   T+ +PS     GNPAK +++   
Sbjct: 171 --------WVGRNVSIMKGVSVGSGSVIGYGSIV---TKDVPSMCAAAGNPAKIIKRNII 219

Query: 195 EE 196
             
Sbjct: 220 WA 221

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 29/146 (19%)

Query: 60  FVAPSASIIGDVQVGRGSSIWYGCVL-------RGDVNSISVGSGTNIQDNSLVHVAKSN 112
            +     +   +++G+  SI  G  +       R D ++       N  +  +  + +  
Sbjct: 50  ILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLP 109

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           + G    T IG++V                 ++G    ++ GV +    +VAA S+V ++
Sbjct: 110 IKG---DTIIGNDV-----------------WIGKDVVIMPGVKIGDGAIVAANSVVVKD 149

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIA 198
             I    + GGNPA  +++  D++  
Sbjct: 150 --IAPYMLAGGNPANEIKQRFDQDTI 173

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* Length = 203

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 42/206 (20%), Positives = 73/206 (35%), Gaps = 64/206 (31%)

Query: 29  LQGNYY------FQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIW-- 80
             G  +        E+  R +TLM  F+ +   + +   +    +     VG  + +   
Sbjct: 10  RAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFA--TVGENAWVEPP 67

Query: 81  ----YGCVLRGDVNSISVGSGT--N----IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130
               YG       N I +G     N    I D+  V              TIGDNV +  
Sbjct: 68  VYFSYGS------N-IHIGRNFYANFNLTIVDDYTV--------------TIGDNVLIAP 106

Query: 131 SAVL----HGC---------------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171
           +  L    H                 T+ +  ++G    +  GV +  + ++ AGS+V  
Sbjct: 107 NVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIV-- 164

Query: 172 NTR-IPSGEVWGGNPAKFLRKLTDEE 196
            T+ IP   V  G P + +R++ D +
Sbjct: 165 -TKDIPPNVVAAGVPCRVIREINDRD 189

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} PDB: 3ect_A* Length = 195

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 23/98 (23%)

Query: 119 PTTIGDNVTVGHSAVL----HGC---------------TVEDEAFVGMGATLLDGVVVER 159
           P TIGD+V +G S       H                  +ED+ ++G    +  GV +  
Sbjct: 96  PITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGA 155

Query: 160 HGMVAAGSLVRQNTR-IPSGEVWGGNPAKFLRKLTDEE 196
             +VAA S+V    + +P   + GG PA+ LR L D  
Sbjct: 156 RSVVAANSVV---NQDVPPDTLVGGTPARILRSLKDPA 190

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* Length = 199

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 23/98 (23%)

Query: 119 PTTIGDNVTVGHSAVL----HGC---------------TVEDEAFVGMGATLLDGVVVER 159
             TIGDNV +G +       H                  +    + G    +L GV +  
Sbjct: 94  QITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGE 153

Query: 160 HGMVAAGSLVRQNTR-IPSGEVWGGNPAKFLRKLTDEE 196
             ++ AGS+V   T+ IP   +  GNP K +RK+ ++ 
Sbjct: 154 GSVIGAGSVV---TKDIPPHSLAVGNPCKVVRKIDNDL 188

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} Length = 188

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 23/96 (23%)

Query: 119 PTTIGDNVTVGHSAVL----HGC---------------TVEDEAFVGMGATLLDGVVVER 159
              IGDNV +  +  +    H                  + D  ++G G  +  G+ +  
Sbjct: 96  KIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD 155

Query: 160 HGMVAAGSLVRQNTR-IPSGEVWGGNPAKFLRKLTD 194
           + ++ AGS+V   T+ IP   V  GNP + ++K+ +
Sbjct: 156 NVVIGAGSVV---TKDIPPNTVAVGNPCRVIKKIEE 188

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} PDB: 3igj_A* Length = 190

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 23/96 (23%)

Query: 119 PTTIGDNVTVGHSAVL----HGC---------------TVEDEAFVGMGATLLDGVVVER 159
              IGD+        +    H                  + +  +VG GA +  GV +  
Sbjct: 98  EVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGD 157

Query: 160 HGMVAAGSLVRQNTR-IPSGEVWGGNPAKFLRKLTD 194
           + ++A+G++V   T+ +P+  V GGNPAK ++ + +
Sbjct: 158 NAVIASGAVV---TKDVPNNVVVGGNPAKVIKTIEE 190

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 50/174 (28%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV----NSISVGS------GTNIQDNS 104
                 V  +  I G V +   + I  G  + G V     S  +G        T + + +
Sbjct: 229 SQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGS-EIGPNSYLRPYTILVEKN 287

Query: 105 ----LVHVAKSNL-SGKVLP-------TTIGDNVTVGHSAVL------------------ 134
                V V +S +  G  +P       + I ++V  G   ++                  
Sbjct: 288 KIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKR 347

Query: 135 -------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW 181
                   G  +      G+  T+L GV +  +  +  G++V ++  +  GE +
Sbjct: 348 ISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD--VGYGEFF 399

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 Length = 182

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 23/94 (24%)

Query: 119 PTTIGDNVTVGHSAVL----HGC---------------TVEDEAFVGMGATLLDGVVVER 159
           P  IGDN  +     +    H                 T+ +  ++G  A +  GV +  
Sbjct: 92  PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151

Query: 160 HGMVAAGSLVRQNTR-IPSGEVWGGNPAKFLRKL 192
           + +VA+G++V   T+ +P   V GGNPA+ ++KL
Sbjct: 152 NVVVASGAVV---TKDVPDNVVVGGNPARIIKKL 182

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A Length = 185

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 64/202 (31%)

Query: 29  LQGNYY------FQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIW-- 80
           L G+ Y        ++  R R L+ ++++    + D        + G    G    I   
Sbjct: 9   LAGHLYNPADLELVKERERARRLVRLYNETLETEYDKRTGLLKELFG--STGERLFIEPN 66

Query: 81  ----YGCVLRGDVNSISVGSGT--N----IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130
               YG       N I VG     N    I D   V               IGD+  +G 
Sbjct: 67  FRCDYGY------N-IHVGENFFMNFDGVILDVCEV--------------RIGDHCFIGP 105

Query: 131 SAVL----HGC---------------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171
              +    H                  +    ++G  A +  GV +  + ++A+G++V  
Sbjct: 106 GVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVV-- 163

Query: 172 NTR-IPSGEVWGGNPAKFLRKL 192
            T+ +P+  V GGNPAK ++ L
Sbjct: 164 -TKDVPANAVVGGNPAKVIKWL 184

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* Length = 215

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 30/134 (22%)

Query: 73  VGRGSSIWYGCVLRGDVNSISVGSGTNIQDN---------SLVHVAKSNLSGKVLPTTIG 123
             + +       +  +   IS+G    +             +  +             IG
Sbjct: 83  QAKTTMGNGEITIA-EKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIG 141

Query: 124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIP-SGEVWG 182
           ++V                 ++G   T+L GV +  + +V + +++ ++        V  
Sbjct: 142 NHV-----------------WLGRNVTILKGVCIPNNVVVGSHTVLYKS--FKEPNCVIA 182

Query: 183 GNPAKFLRKLTDEE 196
           G+PAK +++     
Sbjct: 183 GSPAKIVKENIVWG 196

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} Length = 287

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 122 IGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           + DNV++ H   L G           +     +G GA +L  + V +   +AAGS+V ++
Sbjct: 193 VEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKS 252

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAF 199
             +P      G PA+ + +    E + 
Sbjct: 253 --VPHNVTVAGVPARIIGETGCTEPSR 277

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 21/91 (23%)

Query: 60  FVAPSASII-GDVQVGRGSSIWYGCVLRGDV---NSISVGSGTNIQDNSLVHVAKSNLSG 115
              P+   + G ++ G+   I    ++ G+V   + + +G+G  +++             
Sbjct: 254 IYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKN------------- 300

Query: 116 KVLPTTIGDNVTVGHSAVLHGCTVEDEAFVG 146
                 IG++V +   +VL    V ++A +G
Sbjct: 301 ----VVIGNDVEIKPYSVLEDSIVGEKAAIG 327

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 55/174 (31%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS 114
             KD  +  +  I G+V++G    I  GCVL+   N + +G+   I+  S++  +     
Sbjct: 268 HGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK---NVV-IGNDVEIKPYSVLEDSIVGEK 323

Query: 115 GKVLP-------TTIGDNVTVG------------HSAVLH---------------GC--- 137
             + P         +     VG             S V H               G    
Sbjct: 324 AAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVI 383

Query: 138 ------------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE 179
                        + D+ FVG    L+  V V     + AG+ + ++  +   E
Sbjct: 384 TCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRD--VGENE 435

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 27/106 (25%)

Query: 60  FVAPSASII-GDVQVGRGSSIWYGCVLRGDV---NSISVGSGTNIQDNSLVHVAKSNLSG 115
            + PS   + G++  GR  +I    ++ G V   + + +G+G  +++             
Sbjct: 257 LLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKN------------- 303

Query: 116 KVLPTTIGDNVTVGHSAVLHGCTVEDEAFVG------MGATLLDGV 155
                 IGD+  +    VL    ++    VG       GA L +G 
Sbjct: 304 ----CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGA 345

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 55/174 (31%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS 114
             +D  +  +  I G V +G    I  GCVL+   N + +G  + I   +++  A+ + +
Sbjct: 271 HGRDITIDTNVIIEGHVILGDRVRIGTGCVLK---NCV-IGDDSEISPYTVLEDARLDAN 326

Query: 115 GKVLP-------TTIGDNVTVG------------HSAVLH---------------GC--- 137
             V P         + +   VG             S   H               G    
Sbjct: 327 CTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTI 386

Query: 138 ------------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE 179
                        + D+ FVG    L+  V V     + AG+ V ++  +   E
Sbjct: 387 TCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRD--VAENE 438

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 86/268 (32%)

Query: 13  FWIRETGQA--LDR-LGCRLQGNYYFQEQLSRHRTLMNIF---DKAPAVDKDAFVAPSAS 66
           FW   + Q   + + +   L+ NY F         LM+      + P++    ++     
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKF---------LMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 67  IIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV 126
           +  D QV            + +V+ +                 +  L  ++ P     NV
Sbjct: 119 LYNDNQV----------FAKYNVSRL-----------QPYLKLRQALL-ELRP---AKNV 153

Query: 127 TVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA 186
                 ++ G        +G G T +   V   + +           ++     W     
Sbjct: 154 ------LIDG-------VLGSGKTWVALDVCLSYKVQ---------CKMDFKIFW----L 187

Query: 187 KFLRKLTDEEI-----AFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEE 241
                 + E +       + Q   N+++ +  H++        I+ E  LR+    +   
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAE--LRRLLKSKP-- 242

Query: 242 YDSMLGVVRETPQEIIVPDSIKDPKSLQ 269
           Y++ L          +V  ++++ K+  
Sbjct: 243 YENCL----------LVLLNVQNAKAWN 260

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 60  FVAPSASII-GDVQVGRGSSIWYGCVLRGDV---NSISVGSGTNIQDNSLVHVAKSNLSG 115
            V P+ + I  DV +GR + I  G  L G         VG  T + D             
Sbjct: 272 VVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTD------------- 318

Query: 116 KVLPTTIGDNVTVGHSAVLHGCTVEDEAFVG 146
                 +GD  +V  +      ++ D A VG
Sbjct: 319 ----VAVGDGASVVRT-HGSSSSIGDGAAVG 344

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 Length = 289

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 122 IGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           I ++V++  S  L G           + +   +G GA +L  + V R   + AGS+V Q 
Sbjct: 186 IENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP 245

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAF 199
             +P      G PA+ + K   ++ + 
Sbjct: 246 --VPPHTTAAGVPARIVGKPDSDKPSM 270

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* Length = 267

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 122 IGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           I ++V++     L G           V +   +G GA +L  + V ++  + A S+V   
Sbjct: 166 IENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP 225

Query: 173 TRIPSGEVWGGNPAKFLRKLTDEEIAF 199
             +P      G PA+ + +    + AF
Sbjct: 226 --VPEYATAAGVPARIVSQDKAAKPAF 250

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 22/91 (24%)

Query: 60  FVAPSASII-GDVQVGRGSSIWYGCVLRGDV---NSISVGSGTNIQDNSLVHVAKSNLSG 115
           FV P A+ I  DV++     I    +L+G         + +GT + D             
Sbjct: 263 FVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVD------------- 309

Query: 116 KVLPTTIGDNVTVGHSAVLHGCTVEDEAFVG 146
               +TIG    + +S ++   +V D   VG
Sbjct: 310 ----STIGAGAVITNS-MIEESSVADGVTVG 335

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 52/184 (28%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVLR------------------GDVNSI---------- 92
           +     I    ++G+ +    G V+                   GD N            
Sbjct: 39  IEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGT 98

Query: 93  SVGSGTNIQDNSL----VHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGM 147
              S T I + +      HV             +G+N  + H AVL G  T+ + AF+  
Sbjct: 99  KEDSPTVIGNKNYFMGNSHVGHD--------CILGNNNILTHGAVLAGHVTLGNFAFISG 150

Query: 148 GATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL---------RKLTDEEIA 198
              +     V  + MVA  + V Q+   P   V  GNP+  +            + E   
Sbjct: 151 LVAVHQFCFVGDYSMVAGLAKVVQDV-PPYSTV-DGNPSTVVGLNSVGMKRAGFSPEVRN 208

Query: 199 FISQ 202
            I  
Sbjct: 209 AIKH 212

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 42/179 (23%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISVGSGTNIQDNSLVHVAKS 111
           +     + G  ++GR + I+    +          G+   + +G    I+++  +H    
Sbjct: 44  LKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTV 103

Query: 112 NLSGKVLPTTIGDN------VTVGH------------SAVLHG-CTVEDEAFVGMGATLL 152
              G    T +G +        + H            +A L G  +V+D A +G    + 
Sbjct: 104 QGGGL---TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH 160

Query: 153 DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL---------RKLTDEEIAFISQ 202
              ++  H MV   S V Q+   P      GN A            R  + E I  I  
Sbjct: 161 QFCIIGAHVMVGGCSGVAQDV-PPYVIA-QGNHATPFGVNIEGLKRRGFSREAITAIRN 217

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 42/179 (23%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISVGSGTNIQDNSLVHVAKS 111
           +   + I G   +G  + I +   +         + +   + +G    I++ + +H    
Sbjct: 61  IGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTV 120

Query: 112 NLSGKVLPTTIGDN------VTVGH------------SAVLHG-CTVEDEAFVGMGATLL 152
             +G    TT+GD+      V +GH            +A + G   + D A VG  + + 
Sbjct: 121 QDAGV---TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVH 177

Query: 153 DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL---------RKLTDEEIAFISQ 202
             V +  H M+   S + Q+   P      GN A+           R  + + I+ +  
Sbjct: 178 QYVRIGAHSMLGGASALVQDI-PPFVIA-AGNKAEPHGINVEGLRRRGFSPDAISALRS 234

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 30/118 (25%)

Query: 45  LMNIFDKAPA----VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNI 100
           L ++FD+ P     +   A VA  A +     VG  + I  G  +         G+G +I
Sbjct: 108 LSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARI---------GAGVSI 158

Query: 101 QDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV 157
             +                  IG    +G    L    T+  +  +G   ++  G V+
Sbjct: 159 GAH----------------CVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI 200

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 24/122 (19%)

Query: 95  GSGTNIQDNSL----VHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGA 149
              T I DN+L     H+A            IGD     ++ +L G   VED       +
Sbjct: 130 SDKTVIGDNNLIMGSCHIAHD--------CKIGDRNIFANNTLLAGHVVVEDNTHTAGAS 181

Query: 150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL---------RKLTDEEIAFI 200
            +     +     +  GS+V Q+       V  G  A+              T  E+  +
Sbjct: 182 VVHQFCHIGSFAFIGGGSVVSQDV-PKYMMV-AGERAELRGLNLEGLRRNGFTMSEMKSL 239

Query: 201 SQ 202
             
Sbjct: 240 RA 241

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 30/118 (25%)

Query: 45  LMNIFDKAPA----VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNI 100
           +  I D  P     +   A +  +A +  +V +G  + I  G  L         G    I
Sbjct: 86  MAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVEL---------GDNVII 136

Query: 101 QDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV 157
                                +G N  +G  + L    T+  E  +G    +  G VV
Sbjct: 137 GAG----------------CFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV 178

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 43/135 (31%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVH-------------VAKSN 112
           II D V++G  +      + RG      V  G+ I DN LV              VA++ 
Sbjct: 230 IIEDDVEIGANT-----TIDRGRFKHSVVREGSKI-DN-LVQIAHQVEVGQHSMIVAQAG 282

Query: 113 LSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172
           ++G    T IG++V +G  A + G              + D V++       A + V ++
Sbjct: 283 IAGS---TKIGNHVIIGGQAGITG-----------HICIADHVIM------MAQTGVTKS 322

Query: 173 TRIPSGEVWGGNPAK 187
             I S  ++GG PA+
Sbjct: 323 --ITSPGIYGGAPAR 335

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 31/119 (26%)

Query: 45  LMNIFDK-----APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTN 99
            + +F        P +   A + P+A I   V +   + +     +         GS  +
Sbjct: 112 CLELFITPVDSGFPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHV---------GSACH 162

Query: 100 IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV 157
           I                   + IG   TVG  + +H    + +   +G    +  G V+
Sbjct: 163 IGSG----------------SVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVI 205

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A Length = 347

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 18/186 (9%)

Query: 2   GTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDK-------APA 54
             L    +T    +     A  +L  RL+G       + +   + +              
Sbjct: 133 PLLPNVAWTNIGAVDLAELAELQLEARLKGKLLEVFSVDKFPKMTDYVVPAGVRIADTAR 192

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISVGSGTNIQDNSLVHVAKSNL 113
           V   A++    +++ +  V   +      ++ G V++ + VG G+++          S  
Sbjct: 193 VRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSG- 251

Query: 114 SGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVV-------ERHGMVAAG 166
            G  +  ++G+   +G +A + G  + D   V  G  +  G  V           +V A 
Sbjct: 252 -GGNIVISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAGTKVALLDEQNALVKVVKAR 309

Query: 167 SLVRQN 172
            L  Q 
Sbjct: 310 DLAGQP 315

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 66/209 (31%)

Query: 55  VDKDAFVAPSASI-----IG-DVQVGRGSSIWYGCVLRGDVNSISVGSGTNI-------- 100
           +++ A +     I     +  D ++G    I  G  +  D    ++G  + +        
Sbjct: 13  IEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDT---TIGDHSRVFSYAIVGD 69

Query: 101 --QD-------NSLVHVAKSNL-----------SGKVLPTTIGDN------VTVGH---- 130
             QD        S V + K+             +     T IGDN        + H    
Sbjct: 70  IPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLL 129

Query: 131 --------SAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW 181
                   +A L G   + D   VG    +   V V    M+A  S + Q+  +P     
Sbjct: 130 GNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDI-VPFCLA- 187

Query: 182 GGNPAKFL--------RKLTDEEIAFISQ 202
            GN A           R+   +E+  +S+
Sbjct: 188 EGNRASIRSLNLVGIRRRFDKDEVDRLSR 216

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 61  VAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISVGSGTNIQDNSLVHVAKS 111
           +  + ++ G   VG+ + I+   VL         +G+ + + +G    I++  +++    
Sbjct: 40  LHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTE 99

Query: 112 NLSGKVLPTTIGDNVTV-GHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170
               K   T IGD   +  +  V H C +     +  G TL   + +  +  +   + + 
Sbjct: 100 GGIKK---TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIH 156

Query: 171 QNTRI 175
           Q  RI
Sbjct: 157 QFVRI 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.97
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.97
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.97
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.97
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.97
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.96
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.95
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.95
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.95
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.95
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.95
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.95
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.94
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.94
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.94
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.93
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.93
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.92
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.91
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.91
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.9
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.9
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.9
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.9
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.89
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.89
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.89
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.89
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.89
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.89
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.89
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.88
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.88
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.87
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.87
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.87
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.87
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.87
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.87
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.87
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.86
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.86
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.86
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.86
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.86
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.85
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.85
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.84
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.83
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.83
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.82
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.81
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.81
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.8
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.8
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.8
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.8
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.8
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.79
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.78
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.78
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.77
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.75
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.75
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.75
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.75
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.75
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.75
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.72
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.72
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.72
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.7
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.7
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.68
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.68
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.66
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.66
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.65
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.65
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.65
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.61
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.6
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.6
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.6
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.59
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.59
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.58
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.58
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.57
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.54
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.54
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.54
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.53
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.52
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.52
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.49
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.48
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.43
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.4
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.39
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.38
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.36
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.35
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.32
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.3
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.29
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.28
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.27
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.25
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.23
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.2
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.19
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.16
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.15
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.05
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.01
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.01
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.87

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.97  E-value=4.7e-30  Score=212.66  Aligned_cols=173  Identities=38%  Similarity=0.677  Sum_probs=156.9

Q ss_pred             hhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC-CCCCccCeEEC
Q 024224           45 LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN-LSGKVLPTTIG  123 (270)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~~~~~Ig  123 (270)
                      +..+....+.++++++|+|++.|.+++.||++|.|++++.|.++.+++.||++|.|+++++|....+. +....++++||
T Consensus        12 ~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig   91 (189)
T 3r1w_A           12 VRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIG   91 (189)
T ss_dssp             EECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEEC
T ss_pred             eeeccCcCCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEEC
Confidence            34556677889999999999999999999999999999999877678999999999999999864332 23345789999


Q ss_pred             CCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHH
Q 024224          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQS  203 (270)
Q Consensus       124 ~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~  203 (270)
                      ++|+|++++.|++++||++||||++|+|.++++||++|+|+++++|.++..||++++++|+||++++++++.+..+++..
T Consensus        92 ~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~~~~~~~~~~~  171 (189)
T 3r1w_A           92 DDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYG  171 (189)
T ss_dssp             SSEEECTTCEEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECCHHHHHHHHHH
T ss_pred             CCCEECCCCEEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 024224          204 ATNYSNLAQVHAAE  217 (270)
Q Consensus       204 ~~~~~~l~~~~~~~  217 (270)
                      .+.+.++.+.|+.+
T Consensus       172 ~~~~~~~~~~~~~~  185 (189)
T 3r1w_A          172 AGNYVRLKDKHLAE  185 (189)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988753

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.97  E-value=4.8e-30  Score=212.38  Aligned_cols=175  Identities=38%  Similarity=0.641  Sum_probs=156.4

Q ss_pred             hhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC-CCCCccCeEEC
Q 024224           45 LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN-LSGKVLPTTIG  123 (270)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~~~~~Ig  123 (270)
                      +..+....+.++++++|+|++.|.+++.||++|.|++++.|.++.+++.||++|.|+++|+|....+. +.+..++++||
T Consensus         8 ~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig   87 (187)
T 3r3r_A            8 LRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIG   87 (187)
T ss_dssp             EECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEEC
T ss_pred             HHhhcccCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEEC
Confidence            45667778899999999999999999999999999999999976567899999999999999753221 22335689999


Q ss_pred             CCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHH
Q 024224          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQS  203 (270)
Q Consensus       124 ~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~  203 (270)
                      ++|+|++++.+++++||++||||++|+|.++++||++|+|+++++|.++..||++++++|+||++++++++.+..+++..
T Consensus        88 ~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~~~~~~~~~~~  167 (187)
T 3r3r_A           88 EDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYS  167 (187)
T ss_dssp             SSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECCHHHHHHHHHH
T ss_pred             CCCEECCCCEEeCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999777899999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhc
Q 024224          204 ATNYSNLAQVHAAENA  219 (270)
Q Consensus       204 ~~~~~~l~~~~~~~~~  219 (270)
                      .+.+.++.+.|++.+.
T Consensus       168 ~~~~~~~~~~~~~~~~  183 (187)
T 3r3r_A          168 ANNYVKWKDDYLSQDN  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            8899999887776444

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.97  E-value=2.2e-29  Score=206.21  Aligned_cols=165  Identities=37%  Similarity=0.655  Sum_probs=152.4

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.+..+.|+++++|+|++.+.+++.||++|.|++++.|.++.+.++||++|.|+++|+|....      .++++||++
T Consensus         6 ~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~------~~~~~Ig~~   79 (173)
T 1xhd_A            6 YPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP------QYPLILEDD   79 (173)
T ss_dssp             ECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT------TCCEEECTT
T ss_pred             eecCCCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCC------CCCeEECCC
Confidence            34567788999999999999999999999999999999998765669999999999999998532      247999999


Q ss_pred             cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT  205 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~  205 (270)
                      |.|++++.+++++||++||||++++|.++++||++|+|+++++|.++..||++++++|+||++++++++.+.+++++..+
T Consensus        80 ~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~  159 (173)
T 1xhd_A           80 VTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRT  159 (173)
T ss_dssp             CEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred             CEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 024224          206 NYSNLAQVHAA  216 (270)
Q Consensus       206 ~~~~l~~~~~~  216 (270)
                      .|..+.+.|+.
T Consensus       160 ~~~~~~~~~~~  170 (173)
T 1xhd_A          160 QYVEKGQYYKS  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887764

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.97  E-value=2.8e-29  Score=205.56  Aligned_cols=167  Identities=38%  Similarity=0.649  Sum_probs=153.1

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.+..+.++++++|+|++.+.+++.||++|.|++++.|.++.+++.||++|.|+++|+|....      .++++||++
T Consensus         4 ~~~~~~~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~------~~~~~Ig~~   77 (173)
T 1v3w_A            4 YEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH------GYPTEIGEY   77 (173)
T ss_dssp             ECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBT------TBCEEECSS
T ss_pred             eccCCCCCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecC------CCCeEECCC
Confidence            45566778999999999999999999999999999999999765679999999999999998532      247999999


Q ss_pred             cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT  205 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~  205 (270)
                      |.|++++.+++++||++||||+++.|.++++||++|+|+++++|.+++.||++++++|+||+++++++++...++....+
T Consensus        78 ~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~~~~~~~~~~~~~  157 (173)
T 1v3w_A           78 VTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAE  157 (173)
T ss_dssp             CEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred             CEECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHh
Q 024224          206 NYSNLAQVHAAEN  218 (270)
Q Consensus       206 ~~~~l~~~~~~~~  218 (270)
                      .|.++.+.|++..
T Consensus       158 ~y~~~~~~~~~~~  170 (173)
T 1v3w_A          158 IYVELAEKHIKGR  170 (173)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            8999988776543

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.97  E-value=2.8e-29  Score=208.83  Aligned_cols=166  Identities=51%  Similarity=0.863  Sum_probs=151.4

Q ss_pred             hhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEEC
Q 024224           44 TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIG  123 (270)
Q Consensus        44 ~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (270)
                      .+..+.+..+.|+++++|+|++.|.+++.||++|.|++++.|.++.++++||++|.|+++|+|....+.    + +++||
T Consensus        25 ~~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~----g-~~~Ig   99 (191)
T 3ixc_A           25 VLVPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMH----G-DTVIG   99 (191)
T ss_dssp             TEECBTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC--------C-CEEEC
T ss_pred             ceecccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCc----C-CeEEC
Confidence            456778889999999999999999999999999999999999877678999999999999999854321    2 79999


Q ss_pred             CCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHH
Q 024224          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQS  203 (270)
Q Consensus       124 ~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~  203 (270)
                      ++|.|++++.+.+++||++|+||++|+|.++++||++|+|+++++|.++..||+++++.|+||++++++++.+..++++.
T Consensus       100 ~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~~~~~~~~~~~  179 (191)
T 3ixc_A          100 KFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEEEILYLQKS  179 (191)
T ss_dssp             TTCEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHH
T ss_pred             CCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877899999999999999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 024224          204 ATNYSNLAQVH  214 (270)
Q Consensus       204 ~~~~~~l~~~~  214 (270)
                      .+.+.++.+.|
T Consensus       180 ~~~~~~l~~~~  190 (191)
T 3ixc_A          180 AENYIALSRGY  190 (191)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            88888887744

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.96  E-value=8.5e-29  Score=206.34  Aligned_cols=170  Identities=18%  Similarity=0.228  Sum_probs=127.3

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCC------CCCccCe
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNL------SGKVLPT  120 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~------~~~~~~~  120 (270)
                      ....+.++|+++++|++++.|.+++.||++|.|+++++|.++.+++.||++|.|+++|+|.......      .....++
T Consensus         7 ~k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~   86 (194)
T 3tv0_A            7 EKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM   86 (194)
T ss_dssp             -----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCE
T ss_pred             hhcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCce
Confidence            3456788999999999999999999999999999999999888899999999999999998654432      1234679


Q ss_pred             EECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC-----CHH
Q 024224          121 TIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL-----TDE  195 (270)
Q Consensus       121 ~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~-----~~~  195 (270)
                      .||++++|+.++.++++.||++||||++|+|+++++||++|+||++++|++++.||++++++|.|++.....     ...
T Consensus        87 ~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~~~~~~~~~~~~~  166 (194)
T 3tv0_A           87 IIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTL  166 (194)
T ss_dssp             EECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCEEEECCCCCC---
T ss_pred             EECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEEeecccCcccchH
Confidence            999999999999999999999999999999999999999999999999999999999999999999754221     123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 024224          196 EIAFISQSATNYSNLAQVHAA  216 (270)
Q Consensus       196 ~~~~~~~~~~~~~~l~~~~~~  216 (270)
                      +.++|++....|..|.+.++.
T Consensus       167 ~~~~l~k~~p~y~~l~k~~k~  187 (194)
T 3tv0_A          167 QLDFLMKILPNYHHLKKTMKG  187 (194)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHhHHHHHHHHHhhc
Confidence            445566666777777776654

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.95  E-value=1.1e-26  Score=202.79  Aligned_cols=198  Identities=18%  Similarity=0.188  Sum_probs=140.8

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc---------CC-CceEECCCCEECCCCEEEcCCCCC---
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG---------DV-NSISVGSGTNIQDNSLVHVAKSNL---  113 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~---------~~-~~v~IG~~~~I~~~~~I~~~~~~~---  113 (270)
                      ..++..+.||++++|++++.|.+++.||++|.|++++.|.+         +. +.+.||++|.|+++++|.......   
T Consensus        29 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~  108 (266)
T 3r0s_A           29 AYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGF  108 (266)
T ss_dssp             CEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSE
T ss_pred             CEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCcc
Confidence            34456667777777777777777888888888888888842         22 478999999999999998654321   


Q ss_pred             ------------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE
Q 024224          114 ------------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV  180 (270)
Q Consensus       114 ------------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i  180 (270)
                                  ....+++.||++|+|+.++.+.+ ++||++||||++|+|.++++||++|+|+++++|.++  ||++++
T Consensus       109 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~d--vp~~~~  186 (266)
T 3r0s_A          109 TRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQD--IVPFCL  186 (266)
T ss_dssp             EEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSC--BCTTEE
T ss_pred             EEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecc--cCCCeE
Confidence                        01236777888888888887765 999999999999999999999999999999999998  999999


Q ss_pred             EeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       181 v~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      ++|+||++..-.. ..+++. -..++...+.+.|+..+.. +...++..++.+..  ..++..+...|+++
T Consensus       187 ~~G~Pa~~~~~n~-~g~~r~-~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~--~~~~~~~~~~f~~~  252 (266)
T 3r0s_A          187 AEGNRASIRSLNL-VGIRRR-FDKDEVDRLSRAFKTLFRQ-GDLKENAKNLLENQ--ESENVKKMCHFILE  252 (266)
T ss_dssp             EEEBTEEEEEECH-HHHHHH-SCHHHHHHHHHHHHHHHSS-SCHHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred             EeccCcEEeecch-hheeec-CCHHHHHHHHHHHHHHHcc-CcHHHHHHHHHhhc--CCHHHHHHHHHHHh
Confidence            9999999843211 111110 1123344555666666666 55555666655544  44666677777653

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.95  E-value=1.3e-26  Score=201.40  Aligned_cols=192  Identities=17%  Similarity=0.198  Sum_probs=144.2

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEE---------cC-CCceEECCCCEECCCCEEEcCCCC----
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR---------GD-VNSISVGSGTNIQDNSLVHVAKSN----  112 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~---------~~-~~~v~IG~~~~I~~~~~I~~~~~~----  112 (270)
                      ..++..+.||++++|++++.|.+++.||++|.|++++.|.         ++ ...+.||++|.|+++|+|......    
T Consensus        25 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~  104 (259)
T 3hsq_A           25 SIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPT  104 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCE
T ss_pred             CEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcE
Confidence            3446677888888888888888888899999999999983         22 467999999999999999865431    


Q ss_pred             ----------CCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          113 ----------LSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       113 ----------~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                                .....+++.||++|+|+.++.+. +++||++||||++|+|.++++||++|+|+++|+|.++  ||+++++
T Consensus       105 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~d--vp~~~~~  182 (259)
T 3hsq_A          105 VIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQD--VPPYSTV  182 (259)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEECSB--BCTTEEE
T ss_pred             EECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEccc--CCCCcEE
Confidence                      01124566666666666666664 4999999999999999999999999999999999998  9999999


Q ss_pred             eecCceec---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          182 GGNPAKFL---------RKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       182 ~G~pa~~i---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      +|+||+++         +.+++++.          .++.+.|+..+...+...++.+++.+..+ ..++.++...|+++
T Consensus       183 ~G~pa~~~~~~~~g~~r~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~  250 (259)
T 3hsq_A          183 DGNPSTVVGLNSVGMKRAGFSPEVR----------NAIKHAYKVIYHSGISTRKALDELEASGN-LIEQVKYIIKFFRD  250 (259)
T ss_dssp             ETTTTEEEEECHHHHHHTTCCHHHH----------HHHHHHHHHHHSSSSCHHHHHHHHHTTCC-CCHHHHHHHHHHHH
T ss_pred             eccCcEEEeecccceeeCCCCHHHH----------HHHHHHHHHHHHcCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHh
Confidence            99999987         33444444          34445566566666566666666666544 34667777777754

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.95  E-value=3.2e-26  Score=199.64  Aligned_cols=201  Identities=13%  Similarity=0.190  Sum_probs=143.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEE---------cCCCceEECCCCEECCCCEEEcCCCCC----
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR---------GDVNSISVGSGTNIQDNSLVHVAKSNL----  113 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~---------~~~~~v~IG~~~~I~~~~~I~~~~~~~----  113 (270)
                      ..++..+.|++++.|++++.|.+++.||++|.|++++.|.         ++..++.||++|.|+++++|.......    
T Consensus        32 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~  111 (265)
T 4e6u_A           32 CIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALT  111 (265)
T ss_dssp             CEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEE
T ss_pred             eEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCce
Confidence            3445666777777777777777788888888888888883         333578999999999999987543210    


Q ss_pred             -----------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          114 -----------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       114 -----------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                                 ....+++.||++|+|+.++.+.+ ++||++||||++|+|.++++||++|+|+++|+|.++  ||+++++
T Consensus       112 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~d--vp~~~~~  189 (265)
T 4e6u_A          112 KIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKD--VPAYVMA  189 (265)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEE
T ss_pred             EEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEccc--CCCCeEE
Confidence                       11236778888888888887765 999999999999999999999999999999999998  9999999


Q ss_pred             eecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-HhccChHHHhhhcccccc
Q 024224          182 GGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRK-KFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       182 ~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  251 (270)
                      +|+||+++... ...++...-..+...++.+.|+..+...+...++.+++.+ .++ ..++..+...|+++
T Consensus       190 ~G~pa~~~~~~-~~g~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~  258 (265)
T 4e6u_A          190 SGNPAHAFGIN-IEGMRRKGWSKNTIQGLREAYKLIFKSGLTSVQAIDQIKSEILP-SVPEAQLLIDSLEQ  258 (265)
T ss_dssp             EETTEEEEEEC-HHHHHHTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTT-TCGGGHHHHHHHHH
T ss_pred             EccCCEEeccc-cccceecCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhcC-CCHHHHHHHHHHhh
Confidence            99999987322 1111110011333445556666666666666666666655 333 34556666667653

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.95  E-value=4.3e-27  Score=203.19  Aligned_cols=212  Identities=27%  Similarity=0.345  Sum_probs=142.5

Q ss_pred             CchhhhHHHHHhHHHHHHHHHHHHhcccccCcchhhhh------hh-hhh---hhhhccCCCceeCCCCEECCCcEEecC
Q 024224            1 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQ------LS-RHR---TLMNIFDKAPAVDKDAFVAPSASIIGD   70 (270)
Q Consensus         1 m~~~~~~i~~~g~~~~~~~~~l~~~~~~~~g~~~~~~~------~~-~~~---~~~~~~~~~~~i~~~~~I~~~~~i~~~   70 (270)
                      |.|.+..|..+   +-.+++++.++++.+.|...+.+.      +. ..+   ..+...+..+.|+++++|+|++.|.++
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~g~   77 (247)
T 1qre_A            1 MMFNKQIFTIL---ILSLSLALAGSGCISEGAEDNVAQEITVDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIGE   77 (247)
T ss_dssp             ----------------------------------------CCCCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEEES
T ss_pred             CccchhhhHHH---HHHHHHHHhhccceeecccccccccchhhhhhhccCCCCccccccCCCcEECCCcEECCCCEEeCC
Confidence            55555533322   556788888899988887765555      22 111   234556678899999999999999999


Q ss_pred             eEECCCCEEccCCEEEcCCC-ceEECCCCEECCCCEEEcCCCC-CC------------CCccCeEECCCcEECcCcEEec
Q 024224           71 VQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQDNSLVHVAKSN-LS------------GKVLPTTIGDNVTVGHSAVLHG  136 (270)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~-~v~IG~~~~I~~~~~I~~~~~~-~~------------~~~~~~~Ig~~v~I~~~~~i~~  136 (270)
                      +.||++|+|+++++|.++.+ +++||++|.|+++|+|...... ..            +..++++||++|+|++++.+.+
T Consensus        78 v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~  157 (247)
T 1qre_A           78 VTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHG  157 (247)
T ss_dssp             EEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEE
T ss_pred             cEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcC
Confidence            99999999999999997654 7899999999999999864311 00            0124699999999999999988


Q ss_pred             -eEECCCcEECCccEECCCcEECCCcEECCCCee-----cCCCccCCCcEEee-cCceeccCCCHHH--HHHHHHHHHHH
Q 024224          137 -CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV-----RQNTRIPSGEVWGG-NPAKFLRKLTDEE--IAFISQSATNY  207 (270)
Q Consensus       137 -~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV-----~~~~~I~~~~iv~G-~pa~~i~~~~~~~--~~~~~~~~~~~  207 (270)
                       ++||++|+||++|+|.+ ++||++|+|+++++|     .+++.|++++++.+ +|++.++.+.+..  ..+.++..+.+
T Consensus       158 ~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v~~g~vv~~~~pa~~i~~~~~~~~~~~~~~~~~~~~  236 (247)
T 1qre_A          158 PAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAVVYVN  236 (247)
T ss_dssp             EEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEECTTCEECSHHHHHTCCBCCTTSTTTTHHHHHHHHH
T ss_pred             CcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEECCCCEEecCcchhhhhhhhhhhhhHHHHHHHHHHH
Confidence             99999999999999998 999999999999999     33445555666655 4999999888776  66777777788


Q ss_pred             HHHHHHHHH
Q 024224          208 SNLAQVHAA  216 (270)
Q Consensus       208 ~~l~~~~~~  216 (270)
                      .+|++.|..
T Consensus       237 ~~l~~~~~~  245 (247)
T 1qre_A          237 VHLAEGYKE  245 (247)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhc
Confidence            888887753

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.95  E-value=5.1e-26  Score=200.21  Aligned_cols=199  Identities=17%  Similarity=0.168  Sum_probs=133.1

Q ss_pred             CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc---------CCCceEECCCCEECCCCEEEcCCCCC-------
Q 024224           50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG---------DVNSISVGSGTNIQDNSLVHVAKSNL-------  113 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~---------~~~~v~IG~~~~I~~~~~I~~~~~~~-------  113 (270)
                      +..+.||+++.|++++.|.+++.||++|.|++++.|.+         +...+.||++|.|+++|+|..+....       
T Consensus        50 ~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG  129 (283)
T 4eqy_A           50 GSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLG  129 (283)
T ss_dssp             CTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTSEEEEC
T ss_pred             CCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCCceEEC
Confidence            34445555555555555555666666666666666632         22367777888888877777543211       


Q ss_pred             --------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeec
Q 024224          114 --------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGN  184 (270)
Q Consensus       114 --------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~  184 (270)
                              ....++++||++|+|+.++.+.+ ++||++||||++|+|.++++||++|+|+++++|.++  ||++++++|+
T Consensus       130 ~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~d--vp~~~~~~G~  207 (283)
T 4eqy_A          130 DDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQD--IPPFVIAAGN  207 (283)
T ss_dssp             SSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETB
T ss_pred             CCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecc--cCCCcEEecc
Confidence                    01236677777777777777765 999999999999999999999999999999999998  9999999999


Q ss_pred             CceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccCh---HHHhhhcccccc
Q 024224          185 PAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRD---EEYDSMLGVVRE  251 (270)
Q Consensus       185 pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  251 (270)
                      ||+++... ...++...-..+....+.+.|+..+...+...++.+++.+......   ++..+...|+++
T Consensus       208 pa~~~~~n-~~gl~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  276 (283)
T 4eqy_A          208 KAEPHGIN-VEGLRRRGFSPDAISALRSAYRILYKNSLSLEEAKVQLSELAQAGGDGDAAVKALVDFVES  276 (283)
T ss_dssp             TTEEEEEC-HHHHHHTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHT
T ss_pred             CcEEeecc-cccceecCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccCCchHHHHHHHHHHHhh
Confidence            99988322 1111111111233445556666666666666666666666554332   267777777753

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.95  E-value=2.3e-26  Score=204.54  Aligned_cols=199  Identities=17%  Similarity=0.229  Sum_probs=127.9

Q ss_pred             CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc--------------------------------CCCceEECCC
Q 024224           50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG--------------------------------DVNSISVGSG   97 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~--------------------------------~~~~v~IG~~   97 (270)
                      +..+.||+++.|++++.|.+++.||++|.|+++++|.+                                +.+.+.||++
T Consensus        35 ~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~  114 (305)
T 3t57_A           35 GSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNN  114 (305)
T ss_dssp             CTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSS
T ss_pred             CCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEEECCC
Confidence            44445555555555555555555555555555555532                                1223556666


Q ss_pred             CEECCCCEEEcCCCCC--------------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcE
Q 024224           98 TNIQDNSLVHVAKSNL--------------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGM  162 (270)
Q Consensus        98 ~~I~~~~~I~~~~~~~--------------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~v  162 (270)
                      |.|+++++|....+..              ....+++.||++|.++.++.+.+ ++||++||||.++.|.++++||++|+
T Consensus       115 ~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~  194 (305)
T 3t57_A          115 NEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAF  194 (305)
T ss_dssp             CEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCE
T ss_pred             cccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCE
Confidence            6666666665433210              11234455555555555555544 89999999999999999999999999


Q ss_pred             ECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhHHHHHHHHHHh-cc
Q 024224          163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAK----SFDEIEFEKVLRKKF-AR  237 (270)
Q Consensus       163 IgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~-~~  237 (270)
                      |+++|+|++|  ||++++++|+||++. .+....+++.....+.+.++.+.|+..|..    .+...++.+++.+.. ..
T Consensus       195 ig~gs~V~~d--vp~~~~~~G~Pa~~~-~~n~~g~~r~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
T 3t57_A          195 IGGGSVVSQD--VPKYMMVAGERAELR-GLNLEGLRRNGFTMSEMKSLRAAYRKIFMSTETVSLSFEERLTELEQDQELY  271 (305)
T ss_dssp             ECTTCEECSB--BCTTEEEETTBTEEE-EECHHHHHHTTCCHHHHHHHHHHHHHHHCCTTSSTTCSHHHHHHHHHCHHHH
T ss_pred             EcCCCeEccc--CCCCeEEecCCcEEe-ccchhheeecCCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHhhcccC
Confidence            9999999998  999999999999984 444444444333456777888888888873    344455555554431 22


Q ss_pred             ChHHHhhhcccccc
Q 024224          238 RDEEYDSMLGVVRE  251 (270)
Q Consensus       238 ~~~~~~~~~~~~~~  251 (270)
                      ..++..+...|+++
T Consensus       272 ~~~~~~~~~~f~~~  285 (305)
T 3t57_A          272 SVPAVSAMLQSIRD  285 (305)
T ss_dssp             TSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            44666777777753

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.94  E-value=6.2e-26  Score=198.42  Aligned_cols=200  Identities=14%  Similarity=0.128  Sum_probs=136.1

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEE---------cCCCceEECCCCEECCCCEEEcCCCCC----
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR---------GDVNSISVGSGTNIQDNSLVHVAKSNL----  113 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~---------~~~~~v~IG~~~~I~~~~~I~~~~~~~----  113 (270)
                      ..++..+.||++++|++++.|.+++.||++|.|+++++|.         ++...+.||++|.|+++|+|.......    
T Consensus        26 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~  105 (270)
T 1j2z_A           26 CVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKT  105 (270)
T ss_dssp             CEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEE
T ss_pred             CEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccE
Confidence            3445566777777777777777778888888888888883         333568888888888888887543211    


Q ss_pred             -----------CCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          114 -----------SGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       114 -----------~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                                 ....+++.||++|+|+.++.+. +++||++||||+++.|.++++||++|+|+++|+|.+|  ||+++++
T Consensus       106 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~d--vp~~~~~  183 (270)
T 1j2z_A          106 LIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTV  183 (270)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEE
T ss_pred             EECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCcEeccc--CCCCeEE
Confidence                       0113566666777777777664 4899999999999999999999999999999999998  9999999


Q ss_pred             eecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          182 GGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       182 ~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      .|+||+++.-. .... ...-..+....+.+.|+..+.......++.+++.+..+ ..++.++...|+++
T Consensus       184 ~G~pa~~~~~n-~~g~-r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~f~~~  250 (270)
T 1j2z_A          184 EGNRAFIRGLN-RHRM-RQLLESKDIDFIYALYKRLFRPIPSLRESAKLELEEHA-NNPFVKEICSFILE  250 (270)
T ss_dssp             ETTBTEEEEEC-HHHH-HHHSCHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHTS-SCHHHHHHHHHHHH
T ss_pred             ecCCcEEeccc-chhh-hcCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHh
Confidence            99999998321 1111 11111223344445555555555545555555555444 33555555556554

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.94  E-value=3.8e-25  Score=192.42  Aligned_cols=190  Identities=17%  Similarity=0.221  Sum_probs=124.6

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc---------CCCceEECCCCEECCCCEEEcCCCCC------
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG---------DVNSISVGSGTNIQDNSLVHVAKSNL------  113 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~---------~~~~v~IG~~~~I~~~~~I~~~~~~~------  113 (270)
                      ++..+.|+++++|++++.|.+++.||++|.|+++++|.+         +.+.+.||++|.|+++++|.......      
T Consensus        32 I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~I  111 (262)
T 2qia_A           32 VGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKV  111 (262)
T ss_dssp             ECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEE
T ss_pred             ECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEE
Confidence            344556666666666666666677777777777777742         22357777777777777777543210      


Q ss_pred             ---------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee
Q 024224          114 ---------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG  183 (270)
Q Consensus       114 ---------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G  183 (270)
                               ....+++.||++++|+.++.+.+ ++||++||||+++.|.++++||++|+|+++|+|.++  ||++++++|
T Consensus       112 G~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G  189 (262)
T 2qia_A          112 GSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQG  189 (262)
T ss_dssp             CSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEE
T ss_pred             CCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECCc--CCCCeEEec
Confidence                     00113444444444555554433 899999999999999999999999999999999998  999999999


Q ss_pred             cCceec---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224          184 NPAKFL---------RKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE  251 (270)
Q Consensus       184 ~pa~~i---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (270)
                      +||+++         +.++++..+.++          +.|+..+.......++.+++.+.+++ .++.++...|+++
T Consensus       190 ~pa~~~~~~~~g~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  255 (262)
T 2qia_A          190 NHATPFGVNIEGLKRRGFSREAITAIR----------NAYKLIYRSGKTLDEVKPEIAELAET-YPEVKAFTDFFAR  255 (262)
T ss_dssp             BTEEEEEECHHHHHHTTCCHHHHHHHH----------HHHHHHHTSCCCHHHHHHHHHHHHTT-CGGGHHHHHHHHH
T ss_pred             cCceEecccccccEecCCCHHHHHHHH----------HHHHHHHhcCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHh
Confidence            999987         445555444444          44444444444444455555544432 2445556666654

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.94  E-value=5.3e-26  Score=190.79  Aligned_cols=133  Identities=17%  Similarity=0.295  Sum_probs=121.4

Q ss_pred             CceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEEC
Q 024224           52 APAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVG  129 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~  129 (270)
                      ...+++++.|++++.|.+  ++.||++|.|+++|.|.+   +++||++|.|++++.|.+..       ++++||++|.|+
T Consensus        32 ~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~---~v~IG~~~~I~~~~~I~~~~-------~~~~IG~~~~Ig  101 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSG---KVTIGSYSHIAAYTALYGGE-------VGIEMYDFANIS  101 (205)
T ss_dssp             CSEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEE---EEEECSSEEECTTCEEEEEE-------EEEEECTTCEEC
T ss_pred             CeEECCCCEECCCeEEccCCeeEECCCCEECCCCEEcc---ceEECCCCEECCCeEEEcCC-------ccEEECCCCEEC
Confidence            346899999999999988  899999999999999984   68999999999999997532       369999999999


Q ss_pred             cCcEE--------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee
Q 024224          130 HSAVL--------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG  183 (270)
Q Consensus       130 ~~~~i--------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G  183 (270)
                      ++++|                          .+++||++||||++|+|.++++||++|+|+++++|.++  ||++++++|
T Consensus       102 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~--v~~~~v~~G  179 (205)
T 3vbi_A          102 SRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVG  179 (205)
T ss_dssp             TTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred             CCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc--cCCCeEEEc
Confidence            99998                          45999999999999999999999999999999999998  999999999


Q ss_pred             cCceeccCCCHHH
Q 024224          184 NPAKFLRKLTDEE  196 (270)
Q Consensus       184 ~pa~~i~~~~~~~  196 (270)
                      +||++++.+.+..
T Consensus       180 ~Pa~~i~~~~~~~  192 (205)
T 3vbi_A          180 VPVRKIKARKRKI  192 (205)
T ss_dssp             TTTEEEEECCCHH
T ss_pred             cCCEEeeechhhh
Confidence            9999999876544

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.93  E-value=2.3e-25  Score=188.12  Aligned_cols=168  Identities=27%  Similarity=0.386  Sum_probs=135.8

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCC-ceEECCCCEECCCCEEEcCCCC----CCCCccCe
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISVGSGTNIQDNSLVHVAKSN----LSGKVLPT  120 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~-~v~IG~~~~I~~~~~I~~~~~~----~~~~~~~~  120 (270)
                      +......+.++++++|+|++.+.+++.||++|.|++++.|.++.+ +++||++|.|+++|+|....++    ..+..+++
T Consensus        33 ~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~  112 (213)
T 3kwd_A           33 WSRDLAEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSV  112 (213)
T ss_dssp             ----CCCCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESE
T ss_pred             ceecCCCCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccce
Confidence            344456778999999999999999999999999999999987643 7999999999999999864432    22234579


Q ss_pred             EECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCee-----cCCCccCCCcEEe-ecCceeccCCC
Q 024224          121 TIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV-----RQNTRIPSGEVWG-GNPAKFLRKLT  193 (270)
Q Consensus       121 ~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV-----~~~~~I~~~~iv~-G~pa~~i~~~~  193 (270)
                      +||++|+|++++.+.+ ++||++||||++|+|.+ ++||++|+|+++++|     .+++.||+++++. |+||+.++.++
T Consensus       113 ~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv~~g~pa~~i~~~~  191 (213)
T 3kwd_A          113 WIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPNVE  191 (213)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEECTTCEECSHHHHTTCCBCC
T ss_pred             EECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEECCCcEEcCCCCccccccCC
Confidence            9999999999999988 99999999999999986 999999999999999     5566799999999 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 024224          194 DEEIAFISQSATNYSNLAQVH  214 (270)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~~~  214 (270)
                      +++....++..+...+|.+.|
T Consensus       192 ~~~~~~~~~v~~~~~~l~~~y  212 (213)
T 3kwd_A          192 ESDIHFAQHVVGINEALLSGY  212 (213)
T ss_dssp             HHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            888777766666666665544

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.93  E-value=4.8e-25  Score=183.05  Aligned_cols=134  Identities=24%  Similarity=0.375  Sum_probs=119.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ..+...+.|++++.|++++.|.+++.||++|.|++++.|.   .+++||++|.|++++.|..          .++||++|
T Consensus        10 a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~---~~~~IG~~~~I~~~~~I~~----------~~~Ig~~~   76 (192)
T 3mqg_A           10 AIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVG---NRVRIGNRVKIQNNVSVYD----------NVFLEDDV   76 (192)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC---SSCEECSSCEECTTCEECT----------TEEECTTC
T ss_pred             cEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEEC---CceEECCCcEEcCCcEEeC----------CCEECCCC
Confidence            3456677888889999999999999999999999999997   3579999999999999964          78999999


Q ss_pred             EECcCcEE----------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceecc
Q 024224          127 TVGHSAVL----------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR  190 (270)
Q Consensus       127 ~I~~~~~i----------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~  190 (270)
                      .|++++.+                .+++||++||||++|+|.++++||++|+|+++|+|+++  +|++++++|+|||+++
T Consensus        77 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~--vp~~~v~~G~PAk~i~  154 (192)
T 3mqg_A           77 FCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKD--VPDFALVVGVPARQIG  154 (192)
T ss_dssp             EECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             EECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcc--cCCCCEEEccCCEEEE
Confidence            99998877                45899999999999999999999999999999999998  9999999999999998


Q ss_pred             CCCHH
Q 024224          191 KLTDE  195 (270)
Q Consensus       191 ~~~~~  195 (270)
                      .+.+.
T Consensus       155 ~~~~~  159 (192)
T 3mqg_A          155 WMSRH  159 (192)
T ss_dssp             EBCTT
T ss_pred             eeccc
Confidence            76543

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.92  E-value=2.5e-25  Score=185.55  Aligned_cols=131  Identities=24%  Similarity=0.372  Sum_probs=110.1

Q ss_pred             eeCCCCEECCC--cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           54 AVDKDAFVAPS--ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        54 ~i~~~~~I~~~--~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      .+++++.|.+.  +.++.++.||++|+|+++++|. +...++||++|.|+++|.|.+..|.          .+......+
T Consensus        58 ~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~-~~~~i~IG~~~~Ig~~~~I~~~~~~----------~~~~~~~~~  126 (195)
T 3nz2_A           58 HLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVML-DGAPITIGDHVLIGPSTQFYTASHS----------LDYRRRQAW  126 (195)
T ss_dssp             EECTTCEECSSEEESCSTTEEECTTCEECTTEEEE-CSSCEEECTTCEECTTCEEECEECC----------SSGGGTTTC
T ss_pred             hcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEe-cCceEEECCCCEECCCCEEecCCCC----------ccccccccc
Confidence            58999999994  5677899999999999999998 5568999999999999999875443          333333444


Q ss_pred             cEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHH
Q 024224          132 AVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       132 ~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~  197 (270)
                      +.+ ++++||++||||++|+|.+|++||++|+||+||+|+++  ||++++++|+||++++.+.+...
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~~~~~  191 (195)
T 3nz2_A          127 ETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLKDPAE  191 (195)
T ss_dssp             CCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEECC----
T ss_pred             ceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEccCCEEecccChHhH
Confidence            433 45999999999999999999999999999999999999  99999999999999999876553

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.91  E-value=1.6e-24  Score=181.21  Aligned_cols=131  Identities=20%  Similarity=0.292  Sum_probs=110.1

Q ss_pred             eeCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           54 AVDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        54 ~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      .+++++.|.+.+.+  +.++.||++|+|+++|+|. +.+.++||++|.|+++|+|.+..|+.          +......+
T Consensus        56 ~~g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~-~~~~v~IG~~v~Ig~~~~I~~~~~~~----------~~~~~~~~  124 (199)
T 3ftt_A           56 TTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPL----------NFHHRNEG  124 (199)
T ss_dssp             SCCSSEEECSSEEESSSTTEEECSSEEECTTEEEE-CSSCEEECSSEEECTTCEEECEECCS----------SHHHHHTT
T ss_pred             hcCCCeEEeCCEEEEecCCcEECCCeEECCCeEEe-cCCEEEECCCCEECCCCEEecCCCcC----------cccccccc
Confidence            37889999998888  6789999999999999998 55789999999999999998755432          22222233


Q ss_pred             cE-EeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHH
Q 024224          132 AV-LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       132 ~~-i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~  197 (270)
                      .. .++++||++||||++|+|.+|++||++|+||+||+|+++  ||++++++|+||++++.+++...
T Consensus       125 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pak~i~~~~~~~~  189 (199)
T 3ftt_A          125 FEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKD--IPPHSLAVGNPCKVVRKIDNDLP  189 (199)
T ss_dssp             EEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCCCC-
T ss_pred             ceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEEECCEEEeeCChhhh
Confidence            32 245899999999999999999999999999999999998  99999999999999998865543

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.91  E-value=9.2e-24  Score=176.91  Aligned_cols=130  Identities=20%  Similarity=0.397  Sum_probs=110.1

Q ss_pred             eeCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           54 AVDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        54 ~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      .+++++.|.|.+.+  +.++.||++++|+++++|. +.+.++||++|.|+++|.|.+..|+.+          ......+
T Consensus        57 ~ig~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~----------~~~~~~~  125 (203)
T 1krr_A           57 TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPVH----------HELRKNG  125 (203)
T ss_dssp             BCCSSCEECSCEEESCSTTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEECCSS----------TTTCTTC
T ss_pred             hcCCCcEEcCCeEEEeCCCeEECCeeEECCccEEe-cccceEECCCCEECCCCEEecCCcccc----------hhhcccC
Confidence            48889999998654  6789999999999999998 557899999999999999987655322          1112233


Q ss_pred             c-EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          132 A-VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       132 ~-~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      . .-++++||++||||++|+|.+|++||++|+||+||+|+++  ||++++++|+||++++.+++++
T Consensus       126 ~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--vp~~~vv~G~PArvik~~~~~d  189 (203)
T 1krr_A          126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREINDRD  189 (203)
T ss_dssp             CBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCGGG
T ss_pred             ceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--cCCCcEEEccCcEEeccCChhh
Confidence            3 3356999999999999999999999999999999999999  9999999999999999987643

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.90  E-value=1.3e-23  Score=174.48  Aligned_cols=127  Identities=22%  Similarity=0.388  Sum_probs=109.2

Q ss_pred             eeCC-CCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           54 AVDK-DAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        54 ~i~~-~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      .+++ +++|+|.+.+  +.++.||++++|+++++|. +.+.++||++|.|+++|.|.+..|          .++.+....
T Consensus        59 ~~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~v~IG~~~~Ig~~~~I~~~~~----------~~~~~~~~~  127 (190)
T 3hjj_A           59 SSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVIL-DVCEVRIGDHCMFAPGVHIYTATH----------PLHPVERNS  127 (190)
T ss_dssp             EESSSCCEECSSCEESSSTTEEECTTCEECTTCEEE-CSSCEEECTTCEECTTCEEECEEC----------CSSHHHHTS
T ss_pred             hcCCCCcEECCCEEEEeCCceEECCceeeCCCeEEE-eCCCeEECCceEEcCCcEEecCCc----------cCchhhccc
Confidence            4788 8999998887  6789999999999999998 556899999999999999986444          223333334


Q ss_pred             CcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          131 SAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       131 ~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      ++.+ ++++||++||||++|+|.+|++||++|+||+||+|+++  ||++++++|+||+++|.++
T Consensus       128 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~  189 (190)
T 3hjj_A          128 GKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVVGGNPAKVIKTIE  189 (190)
T ss_dssp             SEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             cccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            4433 34899999999999999999999999999999999998  9999999999999999875

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.90  E-value=7.2e-23  Score=178.82  Aligned_cols=144  Identities=21%  Similarity=0.355  Sum_probs=103.5

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC-----------CCceEECCCCEECCCCEEEcCCC-----
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD-----------VNSISVGSGTNIQDNSLVHVAKS-----  111 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-----------~~~v~IG~~~~I~~~~~I~~~~~-----  111 (270)
                      .++..+.|++++.|++++.|.+++.||++|.|+++++|.++           ..++.||++|.|+++++|.....     
T Consensus        16 ~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~   95 (273)
T 3fs8_A           16 IIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNF   95 (273)
T ss_dssp             EECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTTC
T ss_pred             EECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCCC
Confidence            44556677777777777777777777777777777777643           12356666666655555532110     


Q ss_pred             ---------------------CCCCCccCeEECCCcEECcCcEEe-----------------------------ceEECC
Q 024224          112 ---------------------NLSGKVLPTTIGDNVTVGHSAVLH-----------------------------GCTVED  141 (270)
Q Consensus       112 ---------------------~~~~~~~~~~Ig~~v~I~~~~~i~-----------------------------~~~Ig~  141 (270)
                                           ......+++.||++|.|++++.|.                             +++||+
T Consensus        96 ~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~  175 (273)
T 3fs8_A           96 QTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIEL  175 (273)
T ss_dssp             EECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECT
T ss_pred             EECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCcccccCCcEECC
Confidence                                 000012355566666666555552                             489999


Q ss_pred             CcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          142 EAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       142 ~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +||||.+++|.++++||++|+|+++|+|+++  ||++++++|+||++++.++
T Consensus       176 ~~~IG~~~~I~~g~~IG~~~~IgagsvV~~d--vp~~~~~~G~PA~~i~~~~  225 (273)
T 3fs8_A          176 FAVIAARSVVLPGIHINEDALVGAGAVVTKD--VPKETVVVGNPAREICSIR  225 (273)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEGG
T ss_pred             CeEEcCCCEEcCCCEECCCCEECCCCEECcc--CCCCcEEEecCcEEecccc
Confidence            9999999999999999999999999999998  9999999999999998544

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.90  E-value=6.1e-23  Score=176.34  Aligned_cols=127  Identities=30%  Similarity=0.533  Sum_probs=115.2

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      .+.++.|+|++.|.+++.||++|.|+++++|.+   ++.||++|.|+.+++|..          +++||++|+|++++.+
T Consensus        88 ~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~---~~~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~~~i  154 (240)
T 3r8y_A           88 KGIKARIEPGAIIRDHVEIGDNAVIMMNATINI---GAVIGEGSMIDMNAVLGG----------RATVGKNCHVGAGAVL  154 (240)
T ss_dssp             TTCSSEECTTCEEBSSCEECTTCEECTTCEECT---TCEECTTCEECTTCEECT----------TCEECTTCEECTTCEE
T ss_pred             cCCCCEECCCCEECCCcEECCCCEECCCCEECC---CCEECCCCEECCCCEECC----------CCEECCCcEECCCcEE
Confidence            367789999999999999999999999999974   469999999999999964          7999999999999999


Q ss_pred             ec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          135 HG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       135 ~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      .+         ++||++|+||.+|+|.++++||++|+|+++++|.++  +|++++++|+||++++.+++..
T Consensus       155 ~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~~G~Pak~i~~~~~~~  223 (240)
T 3r8y_A          155 AGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGTPARVIKEIDEKT  223 (240)
T ss_dssp             CCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC----
T ss_pred             CCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCcEEEccCCEEEecCCHHH
Confidence            76         999999999999999999999999999999999998  9999999999999999887554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.90  E-value=1.5e-22  Score=182.58  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=75.3

Q ss_pred             CceEECCCCEECCCCEEEcCCCCC------------CCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcE
Q 024224           90 NSISVGSGTNIQDNSLVHVAKSNL------------SGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVV  156 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~~~~~------------~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~  156 (270)
                      ++++||++|.|+.+++|.....+.            ....+++.||++|+|+.++.+. +++||++||||++|.|.++++
T Consensus       199 g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~  278 (341)
T 3eh0_A          199 GRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHME  278 (341)
T ss_dssp             CCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEE
T ss_pred             CcEEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCE
Confidence            356677777777777665433210            1123455566666666666554 489999999999999999999


Q ss_pred             ECCCcEECCCCeecCCCccC-CCcEEeecCceeccC
Q 024224          157 VERHGMVAAGSLVRQNTRIP-SGEVWGGNPAKFLRK  191 (270)
Q Consensus       157 Ig~~~vIgagsvV~~~~~I~-~~~iv~G~pa~~i~~  191 (270)
                      ||++++|+++++|+++  +| +++++.|+||+.++.
T Consensus       279 Ig~~~vv~a~s~V~~~--v~~~~~~~~G~Pa~~~~~  312 (341)
T 3eh0_A          279 ICDKVTVTGMGMVMRP--ITEPGVYSSGIPLQPNKV  312 (341)
T ss_dssp             ECSSEEECTTCEECSC--BCSCEEEECCCCCEEHHH
T ss_pred             ECCCCEEeeCCEECCC--cCCCCeEEEecCchhHHH
Confidence            9999999999999999  88 999999999998765

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.89  E-value=2.3e-23  Score=172.70  Aligned_cols=127  Identities=22%  Similarity=0.383  Sum_probs=107.8

Q ss_pred             eeCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224           54 AVDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS  131 (270)
Q Consensus        54 ~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~  131 (270)
                      .++++++|.+.+.+  +.++.||++++|+++|+|. +.+.++||++|.|+++|+|.+..|+.+          ......+
T Consensus        58 ~ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~-~~~~i~IG~~~~Ig~~v~I~~~~h~~~----------~~~~~~~  126 (188)
T 3srt_A           58 SVGKQINVEQNIRCDYGYNIHVGENFFANYDCIFL-DVCKIEIGDNVMLAPNVQIYTAYHPID----------AQLRNSG  126 (188)
T ss_dssp             BCCSCEEECSCEEESSSTTEEECTTEEECTTEEEE-CSSCEEECSSCEECTTCEEECEECCSS----------HHHHHTT
T ss_pred             hcCCCCEEcCCEEEEeCCCeEECCcccccCceEEe-cCCceEECCeeEECCCcEEeeCCccCc----------hhhcccc
Confidence            58889999998887  3589999999999999998 557899999999999999987555322          1111223


Q ss_pred             cEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          132 AVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       132 ~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +.+ ++++||++||||++|+|.++++||++|+||+||+|+++  ||++++++|+||++++.++
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~~i~  187 (188)
T 3srt_A          127 IEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIKKIE  187 (188)
T ss_dssp             EEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEEECC
T ss_pred             ceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            322 35899999999999999999999999999999999999  9999999999999999875

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.89  E-value=2.1e-22  Score=183.48  Aligned_cols=99  Identities=13%  Similarity=0.215  Sum_probs=71.2

Q ss_pred             ceEECCCCEECCCCEEEcCCCCC------------CCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEE
Q 024224           91 SISVGSGTNIQDNSLVHVAKSNL------------SGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV  157 (270)
Q Consensus        91 ~v~IG~~~~I~~~~~I~~~~~~~------------~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~I  157 (270)
                      .++||++|.|+.+++|.......            ....+++.||++|+|+.++.+. +++||++||||++|.|.++++|
T Consensus       222 ~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~I  301 (372)
T 3pmo_A          222 GVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEI  301 (372)
T ss_dssp             CEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEE
T ss_pred             CeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEE
Confidence            45666666666666665332110            0112444455555555555443 3899999999999999999999


Q ss_pred             CCCcEECCCCeecCCCcc-CCCcEEeecCceeccC
Q 024224          158 ERHGMVAAGSLVRQNTRI-PSGEVWGGNPAKFLRK  191 (270)
Q Consensus       158 g~~~vIgagsvV~~~~~I-~~~~iv~G~pa~~i~~  191 (270)
                      |++++|+++++|+++  | |+++++.|+||+.++.
T Consensus       302 g~~~vI~a~s~V~k~--v~~~~~~~~G~Pa~~~~~  334 (372)
T 3pmo_A          302 CDNVFVTGMTMVTRS--ITEPGSYSSGTAMQPAAE  334 (372)
T ss_dssp             CSSEEECTTCEECSC--BCSCEEECCSCCCCCHHH
T ss_pred             CCCCEEeeCCEEccC--cCCCCcEEEeCchHHHHH
Confidence            999999999999998  8 9999999999998864

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.89  E-value=7e-23  Score=168.90  Aligned_cols=124  Identities=24%  Similarity=0.434  Sum_probs=103.8

Q ss_pred             eCCCCEECCCcE--EecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           55 VDKDAFVAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        55 i~~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      ++ +++|+|.+.  ++.++.||++++|+++++|. +.+.++||++|.|+++|+|.+..|+.+....          ..+.
T Consensus        56 ~g-~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~----------~~~~  123 (182)
T 1ocx_A           56 VT-EAYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPIDPVAR----------NSGA  123 (182)
T ss_dssp             CS-SEEECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHHHH----------TTTC
T ss_pred             cC-CEEEeCCEEEEeCCCEEECCCcEEeCCeEEE-eccceEEcCCcEEeCCcEEEeCCCccChhhc----------ccCc
Confidence            67 789998854  46789999999999999998 5578999999999999999876553221100          1122


Q ss_pred             -EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          133 -VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       133 -~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                       .-++++||++||||++|+|.++++||++|+|++||+|+++  ||++++++|+||+++|.+
T Consensus       124 ~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv~G~Pa~~i~~~  182 (182)
T 1ocx_A          124 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL  182 (182)
T ss_dssp             BEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEEC
T ss_pred             cccCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEEEccccEEeccC
Confidence             2356899999999999999999999999999999999998  999999999999999853

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.89  E-value=2.1e-22  Score=170.14  Aligned_cols=133  Identities=14%  Similarity=0.244  Sum_probs=116.3

Q ss_pred             CCceeCCCCEECCC-cEEecC---eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           51 KAPAVDKDAFVAPS-ASIIGD---VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        51 ~~~~i~~~~~I~~~-~~i~~~---v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ..+.+++++.|.+. +.+.++   +.||++|.|++++.|.++.+.+.||++|.|++++.+...       ...++||++|
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~-------~~~i~IG~~~  107 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAE-------KGKISIGKDC  107 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECT-------TCEEEECTTC
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeC-------CCCEEECCCC
Confidence            35688999999887 567664   999999999999999866567999999999996555421       1378999999


Q ss_pred             EECcCcEEec--------------------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe-ecC
Q 024224          127 TVGHSAVLHG--------------------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG-GNP  185 (270)
Q Consensus       127 ~I~~~~~i~~--------------------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~-G~p  185 (270)
                      .|++++.|.+                    ++||++||||++|+|.++++||++|+|+++|+|+++  +|++++++ |+|
T Consensus       108 ~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~--vp~~~i~~aG~P  185 (215)
T 2wlg_A          108 MLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKS--FKEPNCVIAGSP  185 (215)
T ss_dssp             EECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSC--CCCCSCEEETTT
T ss_pred             EEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCc--cCCCeEEEcccC
Confidence            9999998864                    599999999999999999999999999999999998  99999999 999


Q ss_pred             ceeccCC
Q 024224          186 AKFLRKL  192 (270)
Q Consensus       186 a~~i~~~  192 (270)
                      |++++..
T Consensus       186 a~~i~~~  192 (215)
T 2wlg_A          186 AKIVKEN  192 (215)
T ss_dssp             TEEEECS
T ss_pred             CEEECCC
Confidence            9999863

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.89  E-value=4.2e-22  Score=181.75  Aligned_cols=72  Identities=18%  Similarity=0.360  Sum_probs=58.1

Q ss_pred             CeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          119 PTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                      ++.||++|.|..++.+. +++||++|+||.++.|.++++||++|+|+++|+|+++  ||+++++.|+||++++.+
T Consensus       268 ~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~--v~~~~~~~G~pa~~~~~~  340 (374)
T 2iu8_A          268 QVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS--ITSPGIYGGAPARPYQEI  340 (374)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSC--BCSCEEEEETTEEEHHHH
T ss_pred             ccEECCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecc--cCCCcEEeCCCCchhHHH
Confidence            33344444444444332 3889999999999999999999999999999999998  999999999999988654

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.89  E-value=9.2e-23  Score=184.97  Aligned_cols=99  Identities=14%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             ceEECCCCEECCCCEEEcCCCCC------------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEE
Q 024224           91 SISVGSGTNIQDNSLVHVAKSNL------------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVV  157 (270)
Q Consensus        91 ~v~IG~~~~I~~~~~I~~~~~~~------------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~I  157 (270)
                      .++||++|.|+.+++|..+..+.            ....+++.||++|+|+.++.+.+ ++||++||||++|.|.+++.|
T Consensus       205 ~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~I  284 (357)
T 4e79_A          205 SVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSI  284 (357)
T ss_dssp             CEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred             cEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEE
Confidence            45555666666665554332110            00123444444444444444433 788888888888888888888


Q ss_pred             CCCcEECCCCeecCCCcc-CCCcEEeecCceeccC
Q 024224          158 ERHGMVAAGSLVRQNTRI-PSGEVWGGNPAKFLRK  191 (270)
Q Consensus       158 g~~~vIgagsvV~~~~~I-~~~~iv~G~pa~~i~~  191 (270)
                      |++++|+++++|+++  + |+++++.|+|++.++.
T Consensus       285 g~~~vv~g~s~V~~~--v~~~~~~~~G~Pa~~~~~  317 (357)
T 4e79_A          285 ADNVTLTGMSMVTKN--ISEAGTYSSGTGLFENNH  317 (357)
T ss_dssp             CSSEEECTTCEECSC--BCSCEEEECSCCCEEHHH
T ss_pred             CCCCEEeecCEEcCc--cCCCCcEEEeCchHHHHH
Confidence            888888888888887  7 8888888888887764

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.89  E-value=3.2e-22  Score=169.57  Aligned_cols=118  Identities=26%  Similarity=0.488  Sum_probs=109.6

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-
Q 024224           58 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-  136 (270)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-  136 (270)
                      .+.++|.+.+.+++.||++|.|+++++|.+   +++||++|.|+.+++|.          ++++||++|+|++++.+.+ 
T Consensus        99 ~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~---~~~IG~~~~I~~~~~I~----------~~~~Ig~~~~i~~~~~i~~~  165 (220)
T 4ea9_A           99 VNAIHPSAVVSPSVRLGEGVAVMAGVAINA---DSWIGDLAIINTGAVVD----------HDCRLGAACHLGPASALAGG  165 (220)
T ss_dssp             CCEECTTCEECTTCEECSSCEECTTCEECT---TCEECTTCEECTTCEEC----------TTCEECTTCEECTTCEECSS
T ss_pred             CCcCCCCCEECCCCEECCCCEEcCCCEECC---CCEECCCCEECCCCEEC----------CCCEECCCCEECCCCEEcCC
Confidence            367899999999999999999999999974   47999999999999995          4899999999999999987 


Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      ++||++||||++|+|.++++||++++|+++++|.++  +|++++++|+||| ++.
T Consensus       166 v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~--v~~~~~~~G~Pa~-i~~  217 (220)
T 4ea9_A          166 VSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLAIGVPAK-IKG  217 (220)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEETTTTE-ECC
T ss_pred             CEECCCCEECCCCEEcCCcEECCCCEECCCCEEccc--cCCCcEEEEeCCE-Eec
Confidence            999999999999999999999999999999999998  9999999999999 544

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.88  E-value=2e-22  Score=166.63  Aligned_cols=126  Identities=21%  Similarity=0.361  Sum_probs=105.5

Q ss_pred             eCCCCEECCCc--EEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224           55 VDKDAFVAPSA--SIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA  132 (270)
Q Consensus        55 i~~~~~I~~~~--~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~  132 (270)
                      +++++.|.+.+  .++.++.||++++|+++++|. +.+.++||++|.|+++|+|.+..|+.+...          ...+.
T Consensus        57 ~g~~~~I~~p~~~~~g~~v~IG~~~~i~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~----------~~~~~  125 (185)
T 2p2o_A           57 TGERLFIEPNFRCDYGYNIHVGENFFMNFDGVIL-DVCEVRIGDHCFIGPGVHIYTATHPLDPHE----------RNSGL  125 (185)
T ss_dssp             CCSCEEECSCEEESCSTTEEECTTEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHHH----------HHTCC
T ss_pred             cCCCcEEeccEEEEecCCEEECCeeEEcCCeEEE-eccceEECCCcEEeCCCEEEcCCCcCChhh----------cccCc
Confidence            77888888864  456789999999999999998 567899999999999999987655322110          01222


Q ss_pred             -EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          133 -VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       133 -~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                       .-++++||++||||++|+|.++++||++|+||+||+|+++  ||++++++|+||+++|+++
T Consensus       126 ~~~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~vi~~i~  185 (185)
T 2p2o_A          126 EYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKVIKWLK  185 (185)
T ss_dssp             BEECCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEECC
T ss_pred             cccCCeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEEeeecC
Confidence             2356899999999999999999999999999999999998  9999999999999998763

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.88  E-value=6.4e-22  Score=171.24  Aligned_cols=132  Identities=23%  Similarity=0.337  Sum_probs=115.5

Q ss_pred             CCCceeCCCCEECCCcEE----ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           50 DKAPAVDKDAFVAPSASI----IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i----~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      ...+.|++++.|.+.+.+    .+.+.||++|.|.++++|. ..+++.||++|.|++++.|.+..       .+++||++
T Consensus        61 ~~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~-~g~~v~IG~~~~Ig~~~~I~~~~-------~~~~IG~~  132 (252)
T 3jqy_B           61 NNKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVAT-KGSKVIIGRRTTIGAGFEVVTDK-------CNVTIGHD  132 (252)
T ss_dssp             SCEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEE-SSCEEEECTTCEECTTCEEECSS-------SEEEECTT
T ss_pred             CCEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEc-cCCEEEECCCCEECCCcEEEeCC-------CCeEECCC
Confidence            445677777777776666    3568999999999999997 33689999999999999998532       26899999


Q ss_pred             cEECcCcEEec--------------------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecC
Q 024224          126 VTVGHSAVLHG--------------------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP  185 (270)
Q Consensus       126 v~I~~~~~i~~--------------------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~p  185 (270)
                      |.|++++.|.+                    ++||++||||++|+|.++++||++|+||++|+|+++  ||++++++|+|
T Consensus       133 ~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~--vp~~~~~~G~P  210 (252)
T 3jqy_B          133 CMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD--VPSMCAAAGNP  210 (252)
T ss_dssp             CEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSC--BCTTEEEEETT
T ss_pred             CEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccC
Confidence            99999998865                    599999999999999999999999999999999998  99999999999


Q ss_pred             ceeccC
Q 024224          186 AKFLRK  191 (270)
Q Consensus       186 a~~i~~  191 (270)
                      |++++.
T Consensus       211 a~~i~~  216 (252)
T 3jqy_B          211 AKIIKR  216 (252)
T ss_dssp             EEEEEE
T ss_pred             CEEEcc
Confidence            999976

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.87  E-value=1.2e-21  Score=163.15  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=108.5

Q ss_pred             CCEECCCcEEecCeEEC--CCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           58 DAFVAPSASIIGDVQVG--RGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        58 ~~~I~~~~~i~~~v~IG--~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      .+.|+|.+.+.+++.||  ++|.|+++++|..   +++||++|.|+++++|.          +++.||++|+|++++.+.
T Consensus        75 ~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~---~~~IG~~~~I~~~~~i~----------~~~~Ig~~~~I~~~~~i~  141 (194)
T 3bfp_A           75 VNLIHKSALISPSAIVEENAGILIMPYVVINA---KAKIEKGVILNTSSVIE----------HECVIGEFSHVSVGAKCA  141 (194)
T ss_dssp             CCEECTTCEECTTCEECTTSCCEECTTCEECT---TCEECTTCEECTTCEEC----------TTCEECTTCEECTTCEEC
T ss_pred             ccccCCeEEECCCceeCCCCCcEEcCCCEECC---CCEECCCCEECCCCEEc----------CCCEECCCCEECCCCEEC
Confidence            36788888888899999  9999999999973   57999999999999995          489999999999999998


Q ss_pred             c-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          136 G-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       136 ~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      + ++||++|+||++++|.++++||++++|+++++|.++  +|+++++.|+|||++
T Consensus       142 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~--v~~~~~~~G~Pa~~i  194 (194)
T 3bfp_A          142 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVGVPAKRM  194 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSCCEECCCCCCCC
T ss_pred             CCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCCEEEeeccEEC
Confidence            8 999999999999999999999999999999999998  999999999999864

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.87  E-value=2.1e-21  Score=169.28  Aligned_cols=148  Identities=14%  Similarity=0.246  Sum_probs=118.3

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCC--CCCc-cCeEE
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNL--SGKV-LPTTI  122 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~-~~~~I  122 (270)
                      .+++.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+   +++||++|.|++++.|...+++.  .+.. ..+.|
T Consensus        10 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g---~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~I   86 (266)
T 3r0s_A           10 SAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILS---DTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVI   86 (266)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS---SCEECTTCEECTTCEEEECCSCSCCC----CEEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeC---CcEECCCcEEccCceeccCCccccccCCcCceEEE
Confidence            346678889999999999999999999999999999999984   57999999999999997654442  1211 23444


Q ss_pred             CC-------------------------CcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccC
Q 024224          123 GD-------------------------NVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIP  176 (270)
Q Consensus       123 g~-------------------------~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~  176 (270)
                      |+                         +|.|+.++.+ +++.||++|+|++++.+.++++||++|+||++++|.++++|+
T Consensus        87 G~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig  166 (266)
T 3r0s_A           87 GKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVG  166 (266)
T ss_dssp             CTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEEC
Confidence            44                         4444444444 458888999999999999999999999999999999999999


Q ss_pred             CCcEEeecCceeccCCCHHHH
Q 024224          177 SGEVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       177 ~~~iv~G~pa~~i~~~~~~~~  197 (270)
                      +++++++. +.+.+++|+...
T Consensus       167 ~~a~Vg~~-s~V~~dvp~~~~  186 (266)
T 3r0s_A          167 EGCMIAGA-SALSQDIVPFCL  186 (266)
T ss_dssp             TTCEECSS-CBBCSCBCTTEE
T ss_pred             CCCEEccC-CeEecccCCCeE
Confidence            99999874 556678877653

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.87  E-value=8.4e-22  Score=167.18  Aligned_cols=124  Identities=20%  Similarity=0.351  Sum_probs=85.1

Q ss_pred             CCCEEccCCEEEcCCCceEECCCCEECCCCEEEc--CCCCCCCCccC---eEECCCcEE---CcCcEEeceEECCCcEEC
Q 024224           75 RGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHV--AKSNLSGKVLP---TTIGDNVTV---GHSAVLHGCTVEDEAFVG  146 (270)
Q Consensus        75 ~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~--~~~~~~~~~~~---~~Ig~~v~I---~~~~~i~~~~Ig~~~~Ig  146 (270)
                      ++|.|++++.|.   .+++||++|.|+++++|..  ..+..++..+.   +..+.....   ..-...++++||++||||
T Consensus        53 ~~~vI~~~~~Ig---~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG  129 (220)
T 4hur_A           53 EDQVLYHYEVIG---DKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIG  129 (220)
T ss_dssp             GGGEESCCTTTC---CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEEC
T ss_pred             CCeEEeCCCEEC---CCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccccccccccccccccCCeEECCCcEEC
Confidence            455666666654   3578888899988888752  22211111000   000100000   011123458999999999


Q ss_pred             CccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC-CCHHHHHHHHHH
Q 024224          147 MGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEEIAFISQS  203 (270)
Q Consensus       147 ~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~~~~~~~~~~~  203 (270)
                      ++|+|.+|++||++|+||++|+|+++  ||++++++|+||++++. ++++..+.+.+.
T Consensus       130 ~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv~G~PAk~ir~r~~~~~i~~l~~~  185 (220)
T 4hur_A          130 RDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFSDGVIEEWLAL  185 (220)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEEeCCCCEeehhcCCHHHHHHHHHh
Confidence            99999999999999999999999999  99999999999999986 666666555543

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.87  E-value=3.4e-21  Score=169.37  Aligned_cols=147  Identities=20%  Similarity=0.284  Sum_probs=117.8

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccC----
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLP----  119 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~----  119 (270)
                      .+.+.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+   +++||++|.|++++.|...+++  +.+....    
T Consensus        28 ~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG  104 (283)
T 4eqy_A           28 TAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEG---HTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIG  104 (283)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECS---EEEECSSCEECTTEEEEECCCCTTCCCCCCEEEEC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC---CcEECCCcEEcCCcEECCCCccccccCCCceEEEC
Confidence            355667788889999999999999999999999999999983   6899999999999999765543  2222223    


Q ss_pred             ---------------------eEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          120 ---------------------TTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       120 ---------------------~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                                           ++||++|.|+.++.+ ++|+||++|+|++++.+.++++||++|+||++++|.++++|++
T Consensus       105 ~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~  184 (283)
T 4eqy_A          105 DRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGA  184 (283)
T ss_dssp             SSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECC
Confidence                                 444555555555545 4588888999999999999999999999999999999999999


Q ss_pred             CcEEeecCceeccCCCHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++++++ .+.+.+++++..
T Consensus       185 ~~vvg~-~s~V~~dvp~~~  202 (283)
T 4eqy_A          185 HSMLGG-ASALVQDIPPFV  202 (283)
T ss_dssp             TCEECT-TCEECSBBCTTE
T ss_pred             CcEECC-CCeEecccCCCc
Confidence            999987 466777777654

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.87  E-value=5.1e-21  Score=166.64  Aligned_cols=147  Identities=22%  Similarity=0.304  Sum_probs=120.1

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEEC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIG  123 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig  123 (270)
                      .+.+.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+   +++||++|.|+++++|...+++  +.+....+.||
T Consensus        13 ~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG   89 (265)
T 4e6u_A           13 TAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGG---FTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIG   89 (265)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECS---SEEECSSCEECTTCEEEECCCCTTCCSCCCEEEEC
T ss_pred             CCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeC---CcEECCCCEEcCCcEECCccccccccCCCCeEEEC
Confidence            355677888999999999999999999999999999999984   6899999999999999765544  22333345555


Q ss_pred             CCcEECcCcEE--------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          124 DNVTVGHSAVL--------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       124 ~~v~I~~~~~i--------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      ++|.|++++++                          +++.||++|+|++++.+.++++||++|+||++++|.++++|++
T Consensus        90 ~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~  169 (265)
T 4e6u_A           90 NNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDS  169 (265)
T ss_dssp             SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred             CCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECC
Confidence            55555555544                          4578888999999999999999999999999999999999999


Q ss_pred             CcEEeecCceeccCCCHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++++++ .+.+.+++++..
T Consensus       170 ~~~i~~-~svV~~dvp~~~  187 (265)
T 4e6u_A          170 YSMIGG-ASLILKDVPAYV  187 (265)
T ss_dssp             TCEECT-TCEECSBBCTTE
T ss_pred             CCEEcC-CCEEcccCCCCe
Confidence            999876 477778887754

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.87  E-value=1.1e-21  Score=182.77  Aligned_cols=136  Identities=21%  Similarity=0.336  Sum_probs=101.9

Q ss_pred             CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEc-----------------CCCC
Q 024224           50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHV-----------------AKSN  112 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~-----------------~~~~  112 (270)
                      ...+.|++++.|+|++.|.+++.||++|.|+++++|.+    +.||++|.|+++++|..                 ...-
T Consensus       266 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~----~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~i  341 (459)
T 4fce_A          266 RGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKN----CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAEL  341 (459)
T ss_dssp             EEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEES----CEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEE
T ss_pred             eCcEEECCCcEECCCeeeccceEECCCCEECCCCEEec----cEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEE
Confidence            44567888889999888888888888888888888862    45555555555444421                 1100


Q ss_pred             CCC-------------------C-----ccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCC
Q 024224          113 LSG-------------------K-----VLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERH  160 (270)
Q Consensus       113 ~~~-------------------~-----~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~  160 (270)
                      ..+                   .     -.++.||++|.|+.++++.        +++||++||||++|+|.++++||++
T Consensus       342 g~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~  421 (459)
T 4fce_A          342 AEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANG  421 (459)
T ss_dssp             CTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTT
T ss_pred             CCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCC
Confidence            000                   0     0134666777777777663        5999999999999999999999999


Q ss_pred             cEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       161 ~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      |+||+||+|+++  ||++++++|+|+++++.
T Consensus       422 ~~igagsvV~~~--v~~~~~~~G~p~~~~~~  450 (459)
T 4fce_A          422 ATIGAGTTVTRD--VAENELVISRVKQVHIQ  450 (459)
T ss_dssp             CEECTTCEECSC--BCTTCEECCCCCCCCCT
T ss_pred             CEECCCCEEccc--cCCCCEEEecccccchh
Confidence            999999999999  99999999999887654

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.87  E-value=6.1e-21  Score=165.66  Aligned_cols=147  Identities=18%  Similarity=0.264  Sum_probs=119.4

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCC-ccCeEE
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGK-VLPTTI  122 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~-~~~~~I  122 (270)
                      .+++.+.+.|++++.|+|++.|++++.||++|.|+++++|.+   +++||++|.|++++.|...+++  |.+. ...+.|
T Consensus         6 ~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~I   82 (259)
T 3hsq_A            6 TAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICA---GSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVI   82 (259)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECT---TEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEE
T ss_pred             CcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcC---CcEECCCcEECCCCEECCCcccccccCccCCcEEE
Confidence            356677889999999999999999999999999999999984   5899999999999999665444  2223 345666


Q ss_pred             CCCcEECcCcEEe-------------------------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          123 GDNVTVGHSAVLH-------------------------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       123 g~~v~I~~~~~i~-------------------------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                      |++|.|+++++|+                         +|.||++|+|++++.+.++++||++|+||++++|.++++|++
T Consensus        83 G~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~  162 (259)
T 3hsq_A           83 GDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGD  162 (259)
T ss_dssp             CSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECT
T ss_pred             CCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECC
Confidence            6666666666554                         366777777777888888999999999999999999999999


Q ss_pred             CcEEeecCceeccCCCHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++++++ .+.+.+++++..
T Consensus       163 ~~~Vg~-~s~V~~dvp~~~  180 (259)
T 3hsq_A          163 YSMVAG-LAKVVQDVPPYS  180 (259)
T ss_dssp             TCEECS-SEEECSBBCTTE
T ss_pred             CCEECC-CCEEcccCCCCc
Confidence            999876 577777877654

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.86  E-value=7.3e-21  Score=171.50  Aligned_cols=162  Identities=19%  Similarity=0.303  Sum_probs=101.3

Q ss_pred             CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------CceEECCCCEECCCCEEEcCCCCCC
Q 024224           50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISVGSGTNIQDNSLVHVAKSNLS  114 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~v~IG~~~~I~~~~~I~~~~~~~~  114 (270)
                      ...+.|+++++|+++++|++++.||++|+|+++++|..+.               .++.||++|.|+++++|.....++.
T Consensus       107 ~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~  186 (341)
T 3eh0_A          107 DATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYA  186 (341)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEE
T ss_pred             CCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEECCcccccc
Confidence            3444455555555555555445555444444444443111               2345666666666666643221110


Q ss_pred             C---------CccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCCcE
Q 024224          115 G---------KVLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERHGM  162 (270)
Q Consensus       115 ~---------~~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v  162 (270)
                      .         ....++||++|.|+.++++                       +++.||++|+|++++.+.++++||++|+
T Consensus       187 ~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~  266 (341)
T 3eh0_A          187 NDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCM  266 (341)
T ss_dssp             EETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCE
T ss_pred             ccCCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcE
Confidence            0         0235777777777777766                       3578888888999999999999999999


Q ss_pred             ECCCCeecCCCccCCCcEEeecCceeccCCC----------HHHHHHHHHHHHHHHHHHH
Q 024224          163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT----------DEEIAFISQSATNYSNLAQ  212 (270)
Q Consensus       163 IgagsvV~~~~~I~~~~iv~G~pa~~i~~~~----------~~~~~~~~~~~~~~~~l~~  212 (270)
                      ||++++|.++++|++++++++. +.+.++++          ....+.|.+....+.++.+
T Consensus       267 Ig~~s~V~~~v~Ig~~~vv~a~-s~V~~~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~~  325 (341)
T 3eh0_A          267 IGGASVINGHMEICDKVTVTGM-GMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDD  325 (341)
T ss_dssp             ECTTCEECSSEEECSSEEECTT-CEECSCBCSCEEEECCCCCEEHHHHHHHHHHHHTHHH
T ss_pred             EcCCCEECCCCEECCCCEEeeC-CEECCCcCCCCeEEEecCchhHHHHHHHHHHHHhHHH
Confidence            9999999999999999999885 44445544          3334445554444444444

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.86  E-value=1.6e-21  Score=170.84  Aligned_cols=129  Identities=26%  Similarity=0.422  Sum_probs=110.7

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      ..++.|+|++.|.+++.||++|.|+++ .|..   ++.||++|.|+++++|..          ++.||++|.|++++.+.
T Consensus       102 ~~g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~---~~~IG~~~~I~~~~~Ig~----------~~~IG~~v~I~~~~~i~  167 (276)
T 3gos_A          102 REGFRVVPPATVRKGAFIARNTVLMPS-YVNI---GAFVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIG  167 (276)
T ss_dssp             HHCCEECTTCEEBTTCEECTTCEECSE-EECT---TCEECTTCEECTTEEECT----------TCEECTTCEECTTCEEC
T ss_pred             cCCcEECCCcEECCCCEECCCCEEcCC-EEcC---CeEECCCCEECCCCEECC----------CCEECCCCEECCCCEEC
Confidence            347788888888889999999999887 6663   579999999999999963          68999999999999985


Q ss_pred             ---------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEE-eec-C------
Q 024224          136 ---------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVW-GGN-P------  185 (270)
Q Consensus       136 ---------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv-~G~-p------  185 (270)
                               +++||++||||++|+|.++++||++|+||+|++|.+++             .||+++++ .|+ |      
T Consensus       168 g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g~~  247 (276)
T 3gos_A          168 GVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSY  247 (276)
T ss_dssp             CCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSC
T ss_pred             CccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCccCCCCcc
Confidence                     49999999999999999999999999999999999843             59999999 586 9      


Q ss_pred             ----ceeccCCCHHHHH
Q 024224          186 ----AKFLRKLTDEEIA  198 (270)
Q Consensus       186 ----a~~i~~~~~~~~~  198 (270)
                          |++++++++....
T Consensus       248 ~~~~A~iik~~~~~~~~  264 (276)
T 3gos_A          248 SLYCAVIVKKVDAKTRS  264 (276)
T ss_dssp             EEEEEEEEEECCC----
T ss_pred             cccccEEEEEcChhhhh
Confidence                9999998776543

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.86  E-value=3.3e-21  Score=174.74  Aligned_cols=162  Identities=13%  Similarity=0.189  Sum_probs=98.3

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------CceEECCCCEECCCCEEEcCCCCC
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISVGSGTNIQDNSLVHVAKSNL  113 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~v~IG~~~~I~~~~~I~~~~~~~  113 (270)
                      +.+.+.|++++.|+|++.|++++.||++|+|+++|+|..+.               .+++||++|.|+++++|......+
T Consensus       111 I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~  190 (357)
T 4e79_A          111 IHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGF  190 (357)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEESCCCCCE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEECcccCcc
Confidence            34445555555555555555555555555555555554211               123444444444444443211110


Q ss_pred             CC---------CccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCCc
Q 024224          114 SG---------KVLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERHG  161 (270)
Q Consensus       114 ~~---------~~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~  161 (270)
                      ..         ..+.++||++|.|+.+++|                       +++.||++|+|++++.|.++++||++|
T Consensus       191 ~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~  270 (357)
T 4e79_A          191 APYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNC  270 (357)
T ss_dssp             EEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             cccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCC
Confidence            00         0125677777777776665                       347888888888888888999999999


Q ss_pred             EECCCCeecCCCccCCCcEEeecCceeccC----------CCHHHHHHHHHHHHHHHHHH
Q 024224          162 MVAAGSLVRQNTRIPSGEVWGGNPAKFLRK----------LTDEEIAFISQSATNYSNLA  211 (270)
Q Consensus       162 vIgagsvV~~~~~I~~~~iv~G~pa~~i~~----------~~~~~~~~~~~~~~~~~~l~  211 (270)
                      +||++++|.++++||++++++|.|. +.++          .|....+.|.+....+.++.
T Consensus       271 ~Ig~~s~V~~~~~Ig~~~vv~g~s~-V~~~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~  329 (357)
T 4e79_A          271 ILAGACGVAGHLSIADNVTLTGMSM-VTKNISEAGTYSSGTGLFENNHWKKTIVRLRQLA  329 (357)
T ss_dssp             EECTTCEECSSCEECSSEEECTTCE-ECSCBCSCEEEECSCCCEEHHHHHHHHHHHHHHT
T ss_pred             EECcCCEECCCeEECCCCEEeecCE-EcCccCCCCcEEEeCchHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999998543 2333          33334445555444444443

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.86  E-value=9e-21  Score=165.61  Aligned_cols=147  Identities=18%  Similarity=0.242  Sum_probs=120.4

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCC--CCCcc------
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNL--SGKVL------  118 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~~------  118 (270)
                      +.+...+.|++++.|+|++.|++++.||++|+|+++++|.   ++++||++|.|+++++|...+++.  .+...      
T Consensus         8 a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~---g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~   84 (270)
T 1j2z_A            8 AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQ---GHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE   84 (270)
T ss_dssp             CEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEEC---SEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEe---CCeEEcCCCEEEeeeEECcCCccccccCCccceEECC
Confidence            4566778899999999999999999999999999999998   368999999999999997655442  22222      


Q ss_pred             -------------------CeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC
Q 024224          119 -------------------PTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG  178 (270)
Q Consensus       119 -------------------~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~  178 (270)
                                         .+.||+++.|+.++.+ ++|.||++|+|++++.+.++++||++++||++++|.++++|+++
T Consensus        85 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~  164 (270)
T 1j2z_A           85 DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKG  164 (270)
T ss_dssp             SCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCc
Confidence                               3556666666666655 45888888888889999999999999999999999999999999


Q ss_pred             cEEeecCceeccCCCHHHH
Q 024224          179 EVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       179 ~iv~G~pa~~i~~~~~~~~  197 (270)
                      +++++ .+.+.++++++..
T Consensus       165 a~Ig~-~s~V~~dvp~~~~  182 (270)
T 1j2z_A          165 CMIAG-KSALGKDVPPYCT  182 (270)
T ss_dssp             CEECT-TCEECSBBCTTEE
T ss_pred             eEEec-CcEecccCCCCeE
Confidence            99876 4888888887654

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.86  E-value=3.5e-21  Score=170.63  Aligned_cols=131  Identities=17%  Similarity=0.288  Sum_probs=111.7

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      +..++.|+|++.|.+++.||++|.|+++ +|.   .++.||++|.|..+++|..          ++.||++|.|++++.+
T Consensus       126 ~~~g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~---~~~~IG~~~~I~~~~~Ig~----------~~~IG~~v~I~~~~~i  191 (304)
T 3eg4_A          126 EKAGFRAVPNCIVRHSAYIAPNAILMPS-FVN---LGAYVDKGAMIDTWATVGS----------CAQIGKNVHLSGGVGI  191 (304)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EEC---TTCEECTTCEECTTEEECT----------TCEECTTCEECTTCEE
T ss_pred             ccCCcEEcCCEEECCCcEECCCCEEeCC-EEC---CCCEECCCcEEcCCcEECC----------CCccCCCcEECCCCEE
Confidence            4467788888888888889999988887 665   3468888888888888863          6899999999999988


Q ss_pred             ec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEEe----------
Q 024224          135 HG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVWG----------  182 (270)
Q Consensus       135 ~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv~----------  182 (270)
                      .+         ++||++|+||++|+|.++++||++|+|++|++|.+++             .||++++++          
T Consensus       192 ~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~kd~~  271 (304)
T 3eg4_A          192 GGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVP  271 (304)
T ss_dssp             CCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECCCCT
T ss_pred             CCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEecCCCC
Confidence            76         9999999999999999999999999999999998653             599999999          


Q ss_pred             ecC-------ceeccCCCHHHHHH
Q 024224          183 GNP-------AKFLRKLTDEEIAF  199 (270)
Q Consensus       183 G~p-------a~~i~~~~~~~~~~  199 (270)
                      |+|       |++++++++....+
T Consensus       272 G~P~g~~~~~A~iik~~~~~t~~~  295 (304)
T 3eg4_A          272 GENWGPSLYCAVIVKRADEKTRSK  295 (304)
T ss_dssp             TSSCCCEEEEEEEEEECCHHHHHH
T ss_pred             CCcCcccccceEEEEEccccchhh
Confidence            999       99999998775443

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.85  E-value=5.4e-21  Score=177.94  Aligned_cols=141  Identities=22%  Similarity=0.294  Sum_probs=106.4

Q ss_pred             cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc----CC---------CceEECCCCEECCCCEEEcCCCCCC-
Q 024224           49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG----DV---------NSISVGSGTNIQDNSLVHVAKSNLS-  114 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~---------~~v~IG~~~~I~~~~~I~~~~~~~~-  114 (270)
                      +...+.|++++.|++++.|.+++.||++|.|++++.|..    +.         ..+.||++|.|+++++|....+-.. 
T Consensus       262 i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~  341 (456)
T 2v0h_A          262 LRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE  341 (456)
T ss_dssp             EEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             EcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC
Confidence            344567889999999999988899999999888888851    00         0123344444444444432111000 


Q ss_pred             ----------------C--Cc-----cCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          115 ----------------G--KV-----LPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       115 ----------------~--~~-----~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                                      +  ..     ++++||++|+||.++++.        +++||++||||++|+|.++++||++|+|
T Consensus       342 ~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~i  421 (456)
T 2v0h_A          342 THVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATI  421 (456)
T ss_dssp             CEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEE
T ss_pred             CEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEE
Confidence                            0  00     346899999999999774        6999999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEEeecCceeccC
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      +++|+|+++  ||++++++|+||++++.
T Consensus       422 g~~s~v~~~--v~~~~~~~G~pa~~~~~  447 (456)
T 2v0h_A          422 GAGTTITRD--VGENELVITRVAQRHIQ  447 (456)
T ss_dssp             CTTCEECSC--BCTTCEECCCCCCCCCT
T ss_pred             CCCCEECCC--cCCCCEEEccCceehhh
Confidence            999999998  99999999999999864

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.85  E-value=6.5e-21  Score=169.49  Aligned_cols=129  Identities=26%  Similarity=0.397  Sum_probs=110.0

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      ++.++.|+|++.|.+++.||++|.|+++ .|..   ++.||++|.|..+++|..          ++.||++|+|++++.+
T Consensus       142 ~~~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~---g~~IG~~~~I~~~~~Ig~----------~~~IG~~v~I~~~~~I  207 (316)
T 3tk8_A          142 AAGGFRVVPPAIARRGSFIAKNVVLMPS-YTNI---GAYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGI  207 (316)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EECT---TCEECTTCEECTTEEECT----------TCEECTTCEECTTCEE
T ss_pred             ecCCcEEeCCeEEeCCcEEcCCCEECCC-EEeC---CCEECCCCEEccceEECC----------CCEECCCCEEcCCCEE
Confidence            4557888899999889999999999887 5542   357899999988888853          7899999999999988


Q ss_pred             ec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEE-eec-C-----
Q 024224          135 HG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVW-GGN-P-----  185 (270)
Q Consensus       135 ~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv-~G~-p-----  185 (270)
                      .+         ++||++||||++|+|.++++||++|+||+|++|.+++             .||+++++ .|+ |     
T Consensus       208 ~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVvaGsvP~~~g~  287 (316)
T 3tk8_A          208 GGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLPAKDGT  287 (316)
T ss_dssp             CCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSS
T ss_pred             CCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEECCCCcCCccc
Confidence            76         9999999999999999999999999999999999944             59999999 596 9     


Q ss_pred             -----ceeccCCCHHHH
Q 024224          186 -----AKFLRKLTDEEI  197 (270)
Q Consensus       186 -----a~~i~~~~~~~~  197 (270)
                           |++++++++...
T Consensus       288 ~~~~~A~iik~~~~~t~  304 (316)
T 3tk8_A          288 HSLYCAVIVKKVDAKTR  304 (316)
T ss_dssp             CEEEEEEEEEECCC---
T ss_pred             ccccceEEEEECCccch
Confidence                 999999876653

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.84  E-value=1.6e-20  Score=158.17  Aligned_cols=144  Identities=20%  Similarity=0.313  Sum_probs=104.8

Q ss_pred             CCCEECCCcEEecCeEECCCCEEcc--------CCEE-----EcCCCceEECCCCEECCCCEEEc-CC--CCCCCCc-cC
Q 024224           57 KDAFVAPSASIIGDVQVGRGSSIWY--------GCVL-----RGDVNSISVGSGTNIQDNSLVHV-AK--SNLSGKV-LP  119 (270)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~--------~~~I-----~~~~~~v~IG~~~~I~~~~~I~~-~~--~~~~~~~-~~  119 (270)
                      .++++.+.. ..+++.||++++|.+        .+++     .++.+.++||++|.|+++|+|.. +.  |..++.. ++
T Consensus        10 ~~~~l~~~~-~~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p   88 (212)
T 1xat_A           10 RGKLLSEQV-SNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFP   88 (212)
T ss_dssp             BCEESTTTC-CCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSC
T ss_pred             cceEEeeec-ccCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccc
Confidence            444555432 356777888887775        2443     12346899999999999999853 22  3322210 11


Q ss_pred             eEE-C---CCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC-CC
Q 024224          120 TTI-G---DNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LT  193 (270)
Q Consensus       120 ~~I-g---~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~  193 (270)
                      ..+ +   +++.+++++.+. +++||++||||++|+|.++++||++|+||++|+|+++  ||++++++|+||++++. ++
T Consensus        89 ~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~G~Pa~~i~~~~~  166 (212)
T 1xat_A           89 FHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIRKRFS  166 (212)
T ss_dssp             GGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSC
T ss_pred             eeeecccccccccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEEccCCEEEcccCC
Confidence            111 2   235566667665 4999999999999999999999999999999999998  99999999999999987 67


Q ss_pred             HHHHHHHHHH
Q 024224          194 DEEIAFISQS  203 (270)
Q Consensus       194 ~~~~~~~~~~  203 (270)
                      +++++.+++.
T Consensus       167 ~~~~~~l~~~  176 (212)
T 1xat_A          167 DGDIQNLLEM  176 (212)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            7777666654

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.83  E-value=8.1e-20  Score=170.72  Aligned_cols=142  Identities=17%  Similarity=0.295  Sum_probs=108.8

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc----CCC--------ceEECCCCEECCCCEEEcCCCCCC-
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG----DVN--------SISVGSGTNIQDNSLVHVAKSNLS-  114 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~~--------~v~IG~~~~I~~~~~I~~~~~~~~-  114 (270)
                      +++..+.|++++.|+|++.|.+++.||++|.|+++++|..    +..        .+.||++|.|++++.|.....-.. 
T Consensus       270 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~  349 (468)
T 1hm9_A          270 YIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQ  349 (468)
T ss_dssp             EECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTT
T ss_pred             EECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCc
Confidence            3566778888999999999988899999888888887751    100        235556666665555542111000 


Q ss_pred             ----------------C--C-----ccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          115 ----------------G--K-----VLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       115 ----------------~--~-----~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                                      +  .     -+++.||++|.|+.++++.        +++||++||||++|+|.++++||++|+|
T Consensus       350 ~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i  429 (468)
T 1hm9_A          350 VHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLV  429 (468)
T ss_dssp             CEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEE
T ss_pred             cEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEE
Confidence                            0  0     0245788888888888774        5999999999999999999999999999


Q ss_pred             CCCCeecCCCccCCCcEEeecCceeccC
Q 024224          164 AAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       164 gagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      +++|+|+++  ||++++++|+||++++.
T Consensus       430 ~~~s~v~~~--v~~~~~~~G~pa~~~~~  455 (468)
T 1hm9_A          430 GAGSTITKD--VPADAIAIGRGRQINKD  455 (468)
T ss_dssp             CTTCEECSC--BCTTCEECCSCCCCCCT
T ss_pred             CCCCEECCC--CCCCCEEEcCcceeehh
Confidence            999999998  99999999999998764

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.83  E-value=3.1e-20  Score=156.61  Aligned_cols=111  Identities=21%  Similarity=0.335  Sum_probs=81.2

Q ss_pred             CceEECCCCEECCCCEEEcCC---CCCCCCc-cC-eEE--CCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCc
Q 024224           90 NSISVGSGTNIQDNSLVHVAK---SNLSGKV-LP-TTI--GDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHG  161 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~~---~~~~~~~-~~-~~I--g~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~  161 (270)
                      ..++||++|.|+++|+|....   |..+... ++ +.+  ++++.+..++.+ ++++||++||||++|+|.++++||++|
T Consensus        57 ~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~  136 (212)
T 3eev_A           57 DKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGA  136 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTC
T ss_pred             CCcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCC
Confidence            468999999999999885432   2211110 00 000  122233344433 459999999999999999999999999


Q ss_pred             EECCCCeecCCCccCCCcEEeecCceeccC-CCHHHHHHHHH
Q 024224          162 MVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEEIAFISQ  202 (270)
Q Consensus       162 vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~~~~~~~~~~  202 (270)
                      +||+||+|+++  ||++++++|+||++++. ++++..+.+.+
T Consensus       137 iIgagsvV~~d--Vp~~~vv~G~PAk~i~~~~~~~~~~~l~~  176 (212)
T 3eev_A          137 IIASRSVVTKD--VAPYEVVGSNPAKHIKFRFSDVEIAMLLE  176 (212)
T ss_dssp             EECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHH
T ss_pred             EECCCCEEccc--cCCCcEEEecCCEEEeccCCHHHHHHHHh
Confidence            99999999998  99999999999999986 56666665554

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.82  E-value=3.4e-19  Score=158.25  Aligned_cols=148  Identities=24%  Similarity=0.327  Sum_probs=107.3

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEE-------------------
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLV-------------------  106 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I-------------------  106 (270)
                      .+.+.+.+.|++++.|+|++.|++++.||++|.|+++++|.+   +++||++|.|+++++|                   
T Consensus        13 ~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g---~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~   89 (305)
T 3t57_A           13 SAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFG---NTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHH   89 (305)
T ss_dssp             TSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECS---SEEECTTCEECTTCEECCSSSEEEEECSSCEECTT
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECC---CcEECCCcEEccCcEeccCCCCceEECCceEECCc
Confidence            345667788889999999999999999999999999999874   3555555555555544                   


Q ss_pred             ---EcCCCCCC---CC------------------------ccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCc
Q 024224          107 ---HVAKSNLS---GK------------------------VLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGV  155 (270)
Q Consensus       107 ---~~~~~~~~---~~------------------------~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv  155 (270)
                         ...++++.   +.                        .+.+.||++|+|+.++.+ ++|.||++|++++++.+.+++
T Consensus        90 a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v  169 (305)
T 3t57_A           90 AVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHV  169 (305)
T ss_dssp             CEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             cEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCC
Confidence               33322211   11                        133444455555555544 347778888888888888899


Q ss_pred             EECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHH
Q 024224          156 VVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       156 ~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~  197 (270)
                      +||++|+||+++.|.++++|++++++++ .+.+.++++++..
T Consensus       170 ~Igd~~~Ig~~~~V~~~v~IG~~a~ig~-gs~V~~dvp~~~~  210 (305)
T 3t57_A          170 VVEDNTHTAGASVVHQFCHIGSFAFIGG-GSVVSQDVPKYMM  210 (305)
T ss_dssp             EECSSCEECTTCEECTTCEECTTCEECT-TCEECSBBCTTEE
T ss_pred             EECCceEEcCCCEEcCCeEECCCCEEcC-CCeEcccCCCCeE
Confidence            9999999999999999999999998876 5778888887643

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.81  E-value=3.7e-19  Score=162.03  Aligned_cols=161  Identities=22%  Similarity=0.313  Sum_probs=98.7

Q ss_pred             CceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------CceEECCCCEECCCCEEEcCCCCCCC-
Q 024224           52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISVGSGTNIQDNSLVHVAKSNLSG-  115 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~v~IG~~~~I~~~~~I~~~~~~~~~-  115 (270)
                      .+.|+++++|+|++.|++++.||++|.|+++++|..+.               .+++||++|.|+++++|......+.. 
T Consensus       131 ~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~  210 (372)
T 3pmo_A          131 DAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANE  210 (372)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEEEECCCCEEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEEecCccccccc
Confidence            33444444444444444444444444444444443111               23556666666666666432111110 


Q ss_pred             --------CccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          116 --------KVLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       116 --------~~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                              ..+.++||++|.|+.+++|                       +++.||++|+|++++.|.++++||++|+||
T Consensus       211 ~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig  290 (372)
T 3pmo_A          211 KGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLA  290 (372)
T ss_dssp             TTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEEC
T ss_pred             CCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEe
Confidence                    0125677777777777665                       347788888888888888999999999999


Q ss_pred             CCCeecCCCccCCCcEEeecCceeccCC----------CHHHHHHHHHHHHHHHHHHHH
Q 024224          165 AGSLVRQNTRIPSGEVWGGNPAKFLRKL----------TDEEIAFISQSATNYSNLAQV  213 (270)
Q Consensus       165 agsvV~~~~~I~~~~iv~G~pa~~i~~~----------~~~~~~~~~~~~~~~~~l~~~  213 (270)
                      ++++|.++++|+++++++|.+. +.+++          |....+.|.+....+..+.+.
T Consensus       291 ~~a~V~~~v~Ig~~~vI~a~s~-V~k~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~~~  348 (372)
T 3pmo_A          291 GGVGLVGHIEICDNVFVTGMTM-VTRSITEPGSYSSGTAMQPAAEWKKSAARIRQLDDM  348 (372)
T ss_dssp             TTCEECSSCEECSSEEECTTCE-ECSCBCSCEEECCSCCCCCHHHHHHHHHHHHTHHHH
T ss_pred             CCCEECCCCEECCCCEEeeCCE-EccCcCCCCcEEEeCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988533 33333          334455666665555555553

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.81  E-value=3.3e-19  Score=163.44  Aligned_cols=127  Identities=22%  Similarity=0.296  Sum_probs=89.7

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC-CCC-----CccCeEECC
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN-LSG-----KVLPTTIGD  124 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~-~~~-----~~~~~~Ig~  124 (270)
                      ..+.+++++.|++++.|.+++.||++|.|+++++|.+   +++||++|.|+++|.|....-. ...     .-++++||+
T Consensus       243 ~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~---~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~  319 (401)
T 2ggo_A          243 GKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRP---YTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAE  319 (401)
T ss_dssp             SCEEECTTCEECTTCEEESSEEECTTCEECSSCEECT---TEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECT
T ss_pred             CCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcC---CcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECC
Confidence            4557788888889999999999999999999999983   5899999999998888421100 000     012456666


Q ss_pred             CcEECcCcEEe-------------------------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCc
Q 024224          125 NVTVGHSAVLH-------------------------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE  179 (270)
Q Consensus       125 ~v~I~~~~~i~-------------------------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~  179 (270)
                      +|+|++++.+.                         +++||++||||++|+|.+|++||++|+|++||+|+++  +|+++
T Consensus       320 ~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~--vp~~~  397 (401)
T 2ggo_A          320 DVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD--VGYGE  397 (401)
T ss_dssp             TCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTC
T ss_pred             CcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc--cCCCc
Confidence            66666666664                         5667777777777777777777777777777777766  67766


Q ss_pred             EEe
Q 024224          180 VWG  182 (270)
Q Consensus       180 iv~  182 (270)
                      +++
T Consensus       398 ~v~  400 (401)
T 2ggo_A          398 FFK  400 (401)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.80  E-value=5.4e-19  Score=162.00  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=99.7

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCC--C-----ccCeEECCCcEECc
Q 024224           58 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSG--K-----VLPTTIGDNVTVGH  130 (270)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~--~-----~~~~~Ig~~v~I~~  130 (270)
                      ...|+|.+.+.+++.||+++.|++++.|.+   ++.||++|.|++++.|.....-..+  .     -++++||+++.|++
T Consensus       232 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~---~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~  308 (401)
T 2ggo_A          232 LGNVEDNVKIKGKVIIEEDAEIKSGTYIEG---PVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPH  308 (401)
T ss_dssp             CSEECSSCEEESCEEECTTCEECTTCEEES---SEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEE
T ss_pred             cceeCCCCEEcCCeEEcCCCEECCCCEEeC---CeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECC
Confidence            357777788888888888888888888873   4777777777777777531100000  0     12455555666666


Q ss_pred             CcEEeceEECCCcEECCccEEC------------------------CCcEECCCcEECCCCeecCCCccCCCcEEeecCc
Q 024224          131 SAVLHGCTVEDEAFVGMGATLL------------------------DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA  186 (270)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~a~I~------------------------~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa  186 (270)
                      ++.+.+++||++|+||+++.|.                        .+++||++|+||++++|.++++|++++++++ .+
T Consensus       309 ~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~-gs  387 (401)
T 2ggo_A          309 LSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYP-GA  387 (401)
T ss_dssp             SCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECT-TC
T ss_pred             CceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECC-CC
Confidence            6666678899999999999997                        4899999999999999999999999998864 57


Q ss_pred             eeccCCCHH
Q 024224          187 KFLRKLTDE  195 (270)
Q Consensus       187 ~~i~~~~~~  195 (270)
                      .+.+++++.
T Consensus       388 vv~~~vp~~  396 (401)
T 2ggo_A          388 VVNRDVGYG  396 (401)
T ss_dssp             EECSCBCTT
T ss_pred             eEccccCCC
Confidence            777777653

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.80  E-value=1.1e-18  Score=159.10  Aligned_cols=102  Identities=14%  Similarity=0.216  Sum_probs=73.0

Q ss_pred             ceEECCCCEECCCCEEEcCCCCCC----------CCccCeEECCCcEECcCcEE-----------------------ece
Q 024224           91 SISVGSGTNIQDNSLVHVAKSNLS----------GKVLPTTIGDNVTVGHSAVL-----------------------HGC  137 (270)
Q Consensus        91 ~v~IG~~~~I~~~~~I~~~~~~~~----------~~~~~~~Ig~~v~I~~~~~i-----------------------~~~  137 (270)
                      +++||++|.|+++++|....+.+.          ...+.++||++|+|+.+++|                       ++|
T Consensus       190 ~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v  269 (374)
T 2iu8_A          190 RVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQV  269 (374)
T ss_dssp             SEEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTC
T ss_pred             cceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCcc
Confidence            456666666666666654321111          01235889999999888877                       346


Q ss_pred             EECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          138 TVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       138 ~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +||++|+|++++.|..+++||++|+|++++.|.++++|++++++++ .+.+.++++
T Consensus       270 ~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a-~s~V~~~v~  324 (374)
T 2iu8_A          270 EVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMA-QTGVTKSIT  324 (374)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECT-TCEECSCBC
T ss_pred             EECCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEcc-CceeecccC
Confidence            7777777777778888899999999999999999999999988875 344444443

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.80  E-value=1.6e-19  Score=152.86  Aligned_cols=111  Identities=20%  Similarity=0.331  Sum_probs=82.9

Q ss_pred             CceEECCCCEECCCCEEEcC--CCCCCCCc-cCeEECCC----cEECcCcEE-eceEECCCcEECCccEECCCcEECCCc
Q 024224           90 NSISVGSGTNIQDNSLVHVA--KSNLSGKV-LPTTIGDN----VTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHG  161 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~--~~~~~~~~-~~~~Ig~~----v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~  161 (270)
                      ..++||++|.|+++|+|...  .|...+.. ..+.++.+    +.+..++.+ ++++||++||||++|+|.++++||++|
T Consensus        64 ~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~  143 (219)
T 4e8l_A           64 DKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGA  143 (219)
T ss_dssp             CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTC
T ss_pred             CCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccccccCCcEECCCeEECCCCEEcCCCEECCCC
Confidence            46999999999999999742  33222100 00112222    233334433 459999999999999999999999999


Q ss_pred             EECCCCeecCCCccCCCcEEeecCceeccC-CCHHHHHHHHH
Q 024224          162 MVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEEIAFISQ  202 (270)
Q Consensus       162 vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~~~~~~~~~~  202 (270)
                      +|+++|+|.++  ||++++++|+||++++. +++++++.+.+
T Consensus       144 ~IgagsvV~~d--v~~~~~~~G~Pa~~i~~r~~~~~i~~l~~  183 (219)
T 4e8l_A          144 IIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFSDGVIEEWLA  183 (219)
T ss_dssp             EECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHH
T ss_pred             EECCCCEEccc--CCCCeEEEecCCEeecccCCHHHHHHHHh
Confidence            99999999998  99999999999999987 56666555443

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.80  E-value=1e-19  Score=161.22  Aligned_cols=75  Identities=23%  Similarity=0.355  Sum_probs=49.0

Q ss_pred             eEECCCcEECcCcEE-----eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe--ecCceeccCC
Q 024224          120 TTIGDNVTVGHSAVL-----HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG--GNPAKFLRKL  192 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i-----~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~--G~pa~~i~~~  192 (270)
                      ++||+++.++.++.+     ..++||++||||++|+|.++++||++|+||+||+|.++  ||++++++  |+||++++++
T Consensus       202 vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~gs~vvi~G~PAkvik~~  279 (313)
T 3q1x_A          202 VTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRD--VDSNQTVYISEHPTHFVKPC  279 (313)
T ss_dssp             CEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSCEECSSEEECTTCEECSC--BCSSEEC-------------
T ss_pred             cEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCCEEEEcCCCcEEEeeC
Confidence            344444444444433     23699999999999999999999999999999999999  99999997  9999999988


Q ss_pred             CHHH
Q 024224          193 TDEE  196 (270)
Q Consensus       193 ~~~~  196 (270)
                      ++..
T Consensus       280 ~~~~  283 (313)
T 3q1x_A          280 TTKG  283 (313)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6553

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.80  E-value=2.6e-19  Score=167.72  Aligned_cols=119  Identities=20%  Similarity=0.317  Sum_probs=110.2

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      ..+.++++++|+|.+.+.+++.||++|.|++++.|    ++++||++|.|+++|+|.           +++||++|+|++
T Consensus       272 ~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I----~~v~IG~~~~I~~~~~I~-----------~~vIG~~~~Ig~  336 (496)
T 3c8v_A          272 SGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL----DNAWMGKGSNAQENCYII-----------NSRLERNCVTAH  336 (496)
T ss_dssp             ----CCTTCEECTTSEEESSCEECTTCEECTTCEE----EEEEECTTCEECTTCEEE-----------EEEEEESCEECT
T ss_pred             cCcccCCCcEECCCcEEeCCeEECCCCEECCCcEE----eceEecCCCEECCCceEe-----------ceEeCCCCEECC
Confidence            35678999999999999999999999999999999    368999999999999997           799999999999


Q ss_pred             CcEEeceEECCCcEECCccEECCC----cEECCCcEECCCCeec--CCCccCCCcEEeec
Q 024224          131 SAVLHGCTVEDEAFVGMGATLLDG----VVVERHGMVAAGSLVR--QNTRIPSGEVWGGN  184 (270)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~a~I~~g----v~Ig~~~vIgagsvV~--~~~~I~~~~iv~G~  184 (270)
                      ++++++++||++|+||++|+|.++    ++||++|+||++|+|.  .+..||+++++.|+
T Consensus       337 ~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~  396 (496)
T 3c8v_A          337 GGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGY  396 (496)
T ss_dssp             TCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEECSE
T ss_pred             CcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEEEE
Confidence            999999999999999999999999    9999999999999999  67779999999986

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.79  E-value=2.1e-18  Score=142.89  Aligned_cols=126  Identities=21%  Similarity=0.310  Sum_probs=105.4

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      |++++|+|.+.|.+++.||+++.|+++++|.+   ++.||++|.|++++.|..          +++||++|.|++++.|.
T Consensus         1 G~~~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~---~~~IG~~~~Ig~~~~I~~----------~~~IG~~~~I~~~~~I~   67 (192)
T 3mqg_A            1 GHMATIHPTAIVDEGARIGAHSRIWHWVHICG---GAEIGEGCSLGQNVFVGN----------RVRIGNRVKIQNNVSVY   67 (192)
T ss_dssp             --CCEECTTCEECTTCEECTTCEECTTCEECT---TCEECTTCEECTTCEECS----------SCEECSSCEECTTCEEC
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECC---CcEECCCCEECCCEEECC----------ceEECCCcEEcCCcEEe
Confidence            46789999999999999999999999999984   579999999999999963          79999999999999884


Q ss_pred             -ceEECCCcEECCccEEC---------------CCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          136 -GCTVEDEAFVGMGATLL---------------DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       136 -~~~Ig~~~~Ig~~a~I~---------------~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                       +++||++|+||+++.+.               .+++||++|+||++++|.++++|+++++++ ..+.+.+++++.
T Consensus        68 ~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~Ig-agsvV~~~vp~~  142 (192)
T 3mqg_A           68 DNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVG-AGAVVNKDVPDF  142 (192)
T ss_dssp             TTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTT
T ss_pred             CCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEc-CCCEECcccCCC
Confidence             59999999999998775               457888888888888888888888887765 345556666543

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.78  E-value=1.2e-18  Score=152.34  Aligned_cols=58  Identities=24%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      .++||++|+||++|+|.++++||++|+||+||+|.++  ||++++++|+||++++...+.
T Consensus       216 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kd--Vp~~svvvG~PAkii~~~~~~  273 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKS--VPHNVTVAGVPARIIGETGCT  273 (287)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC--
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEEccc--cCCCCEEEccCCEEeCcCCCc
Confidence            4899999999999999999999999999999999998  999999999999999887644

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.78  E-value=5.7e-19  Score=148.48  Aligned_cols=122  Identities=17%  Similarity=0.314  Sum_probs=88.5

Q ss_pred             CCCEEccCCEEEcCCCceEECCCCEECCCCEEEc--CCCCCCCCc-cCeEECCC----cEECcCcEE-eceEECCCcEEC
Q 024224           75 RGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHV--AKSNLSGKV-LPTTIGDN----VTVGHSAVL-HGCTVEDEAFVG  146 (270)
Q Consensus        75 ~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~--~~~~~~~~~-~~~~Ig~~----v~I~~~~~i-~~~~Ig~~~~Ig  146 (270)
                      +++.+..++.+.   ..++||++|.|+++|+|..  ..|...+.. ..+.++++    +.+..++.+ ++++||++|+||
T Consensus        47 ~~~~i~~~~~i~---~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG  123 (209)
T 1mr7_A           47 DKQILYHYPILN---DKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIG  123 (209)
T ss_dssp             GGGEESCCGGGC---CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEEC
T ss_pred             eceEEeeccccC---CCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCCCEEc
Confidence            455555555543   3689999999999999864  233322210 11123322    333334433 459999999999


Q ss_pred             CccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC-CCHHHHHHHH
Q 024224          147 MGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEEIAFIS  201 (270)
Q Consensus       147 ~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~~~~~~~~~  201 (270)
                      ++|+|.++++||++|+|+++|+|.++  ||++++++|+||++++. +++++.+.++
T Consensus       124 ~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G~Pa~~i~~~~~~~~~~~l~  177 (209)
T 1mr7_A          124 KDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQDTINQLL  177 (209)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEESSCHHHHHHHH
T ss_pred             CCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEeeCCEEeeccCCHHHHHHHH
Confidence            99999999999999999999999998  99999999999999987 5666555544

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.77  E-value=5.2e-19  Score=154.75  Aligned_cols=121  Identities=18%  Similarity=0.287  Sum_probs=97.7

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .+++++.|+|.+.|..+++||+++.|+++++|.-   +..||++|.|..++.            ..++||++|.|++++.
T Consensus       157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVni---ga~Ig~g~~In~~i~------------iGv~IGd~v~IgpGa~  221 (332)
T 3fsy_A          157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNY---NAGTLGASMVEGRIS------------AGVVVGDGSDVGGGAS  221 (332)
T ss_dssp             CCCTTCEESCGGGBBTTEEECTTCEECTTCEECT---TEEESSCCEECSEEC------------TTCEECTTCEECTTCE
T ss_pred             ecCCCcEECCcCEECCCCEECCCCEEccccEEEE---CCeECcCCEECCcee------------cceEECCCCEECCCCE
Confidence            4778899999999999999999999999998862   345666666543321            1589999999999999


Q ss_pred             Eec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc--------CCCcEEeecCceeccC
Q 024224          134 LHG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI--------PSGEVWGGNPAKFLRK  191 (270)
Q Consensus       134 i~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I--------~~~~iv~G~pa~~i~~  191 (270)
                      |.+         ++||++||||+||+|  +++||++|+||+||+|++|++|        |+..+++++|+++.|+
T Consensus       222 IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a~el~g~~~~~f~r~  294 (332)
T 3fsy_A          222 IMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRN  294 (332)
T ss_dssp             ECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEGGGGTTCSSEEEEEC
T ss_pred             EcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEhHHhcCCCCCEEEec
Confidence            875         999999999999999  8999999999999999998643        4444555678877765

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.75  E-value=4.6e-18  Score=150.31  Aligned_cols=58  Identities=22%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCH
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD  194 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~  194 (270)
                      ..++||++||||+||+|.++++||++|+||+||+|.++  ||++++++|+||+..+..++
T Consensus       250 ~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~d--Vp~~svv~GnPAk~~~~~~~  307 (310)
T 3f1x_A          250 RHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTEN--VPAGSRIVQRKNKDELEHHH  307 (310)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSC--BCTTCEECCCCCC-------
T ss_pred             CCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCc--cCCCcEEECCCcccCCcccc
Confidence            34799999999999999999999999999999999998  99999999999998876644

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.75  E-value=3.7e-18  Score=161.22  Aligned_cols=72  Identities=22%  Similarity=0.432  Sum_probs=65.3

Q ss_pred             CeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE-EeecCceec
Q 024224          119 PTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV-WGGNPAKFL  189 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i-v~G~pa~~i  189 (270)
                      ++.||++|.||.++++.        .++||++|+||.+|.|.++++||++|+||+||+|++|  ||++++ +++.|++.+
T Consensus       386 d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~d--vp~~~l~~~~~~~~~~  463 (501)
T 3st8_A          386 DADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALAVSAGPQRNI  463 (501)
T ss_dssp             SEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECCCCCCCCC
T ss_pred             CceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcc--cCCCCeEEeccCceec
Confidence            78999999999999873        3899999999999999999999999999999999999  999997 456899887


Q ss_pred             cCC
Q 024224          190 RKL  192 (270)
Q Consensus       190 ~~~  192 (270)
                      +.|
T Consensus       464 ~~w  466 (501)
T 3st8_A          464 ENW  466 (501)
T ss_dssp             TTH
T ss_pred             cch
Confidence            653

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.75  E-value=5.3e-18  Score=147.09  Aligned_cols=56  Identities=23%  Similarity=0.384  Sum_probs=51.5

Q ss_pred             ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +++||++|+||++|+|.++++||++|+||+||+|.++  ||++++++|+||++++...
T Consensus       189 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~d--Vp~~~~v~G~PAr~i~~~~  244 (267)
T 1ssq_A          189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIVSQDK  244 (267)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEECC---
T ss_pred             CeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccC--CCCCCEEEecCcEEeccCC
Confidence            4799999999999999999999999999999999998  9999999999999998764

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.75  E-value=2.1e-17  Score=143.46  Aligned_cols=147  Identities=19%  Similarity=0.296  Sum_probs=117.3

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCC--CCCcc-----
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNL--SGKVL-----  118 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~~-----  118 (270)
                      ...+.+.+.|++++.|+|++.|.+++.||++|.|+++++|.   ++++||++|.|+++++|....+++  .+...     
T Consensus        11 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~---~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG   87 (262)
T 2qia_A           11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVN---GHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG   87 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEEC---SEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEEC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEC---CCcEECCCCEEecceEECcCCccccccCCccceEEC
Confidence            34566778899999999999999999999999999999998   458999999999999998655442  12112     


Q ss_pred             --------------------CeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224          119 --------------------PTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS  177 (270)
Q Consensus       119 --------------------~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~  177 (270)
                                          .++||++|+|++++.+ +++.||++++|++++.+.++++||++++||++++|.++++|++
T Consensus        88 ~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~  167 (262)
T 2qia_A           88 DRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGA  167 (262)
T ss_dssp             SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECC
Confidence                                3555566666666655 4577778888888888888899999999999999999999999


Q ss_pred             CcEEeecCceeccCCCHHH
Q 024224          178 GEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       178 ~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++++++ .+.+.+++++..
T Consensus       168 ~~~ig~-~s~V~~~v~~~~  185 (262)
T 2qia_A          168 HVMVGG-CSGVAQDVPPYV  185 (262)
T ss_dssp             TCEECS-SCEECSBBCTTE
T ss_pred             CCEEcc-CCEECCcCCCCe
Confidence            999876 477777777653

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.75  E-value=2e-18  Score=152.11  Aligned_cols=105  Identities=16%  Similarity=0.275  Sum_probs=91.9

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV  133 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~  133 (270)
                      .+++++.|+|.+.|..++.||+++.|++++.|..   ++.||++|.|..++.+            .++||++|.|++++.
T Consensus       180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~---na~IGdg~iI~~~a~i------------gv~IGdnv~IgpGa~  244 (347)
T 3r5d_A          180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNF---NAGTEGPGMIEGRVSA------------GVFVGKGSDLGGGCS  244 (347)
T ss_dssp             CCCTTEEESSGGGBBTTEEECTTEEECTTCEECT---TEEESSSEEECSEECT------------TCEECTTEEECTTCE
T ss_pred             eccCCcEECCcCEECCCCEECCCCEECCCCEECC---CCEECCCcEEcCCceE------------eEEECCCCEECCCCE
Confidence            4778899999999999999999999999998873   3577777777666543            489999999999999


Q ss_pred             Eec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224          134 LHG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI  175 (270)
Q Consensus       134 i~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I  175 (270)
                      |.+         ++||++||||+||+|  +++||++|+||+|++|++|+.|
T Consensus       245 IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          245 TMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             ECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             EccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            976         899999999999999  8999999999999999999776

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.75  E-value=5.7e-18  Score=148.22  Aligned_cols=57  Identities=28%  Similarity=0.473  Sum_probs=53.7

Q ss_pred             eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +.++||++|+||++|+|.++++||++|+||+||+|.++  ||++++++|+||++++...
T Consensus       208 ~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~~s~v~G~PAr~i~~~~  264 (289)
T 1t3d_A          208 RHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARIVGKPD  264 (289)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEEEECCS
T ss_pred             CCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC--CCCCCEEEecCCEEeCcCC
Confidence            34899999999999999999999999999999999998  9999999999999998764

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.72  E-value=3.9e-17  Score=137.52  Aligned_cols=118  Identities=21%  Similarity=0.344  Sum_probs=102.6

Q ss_pred             CCCceeCCCCEECCCcEEec----CeEECCCCEEccCCEEEcCCC-----------ceEECCCCEECCCCEEEcCCCCCC
Q 024224           50 DKAPAVDKDAFVAPSASIIG----DVQVGRGSSIWYGCVLRGDVN-----------SISVGSGTNIQDNSLVHVAKSNLS  114 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~-----------~v~IG~~~~I~~~~~I~~~~~~~~  114 (270)
                      ...+.||+++.|++++.|.+    .+.||++|.|++++.|.+...           +++||++|.|+++++|..      
T Consensus        55 ~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~------  128 (213)
T 3kwd_A           55 IGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHG------  128 (213)
T ss_dssp             EESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEE------
T ss_pred             eCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcC------
Confidence            34567888889998888865    489999999999999985221           489999999999999974      


Q ss_pred             CCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE
Q 024224          115 GKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV  180 (270)
Q Consensus       115 ~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i  180 (270)
                          +++||++|+||.++++.+++||++|+||++++| .+++|++++.|.++++|.++  .|+..+
T Consensus       129 ----~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~vv~~g--~pa~~i  187 (213)
T 3kwd_A          129 ----PAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI-QDVEIPPGKYVPSGMVITTQ--QQADRL  187 (213)
T ss_dssp             ----EEEECTTCEECTTCEEEEEEECTTCEECSSCEE-ESCEECTTBEECTTCEECSH--HHHTTC
T ss_pred             ----CCEECCCCEECCCCEEeCcEECCCCEEcCCCEE-CCcEeCCCCEECCCcEEcCC--CCcccc
Confidence                699999999999999999999999999999999 58999999999999999976  665543

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.72  E-value=3e-17  Score=141.43  Aligned_cols=115  Identities=23%  Similarity=0.387  Sum_probs=101.1

Q ss_pred             CceeCCCCEECCCcEEecC----eEECCCCEEccCCEEEcCC--------------------CceEECCCCEECCCCEEE
Q 024224           52 APAVDKDAFVAPSASIIGD----VQVGRGSSIWYGCVLRGDV--------------------NSISVGSGTNIQDNSLVH  107 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~----v~IG~~~~I~~~~~I~~~~--------------------~~v~IG~~~~I~~~~~I~  107 (270)
                      .+.||++++|++++.|.++    +.||++|.|+++++|.+..                    .+++||++|.|+++|+|.
T Consensus        77 ~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~  156 (247)
T 1qre_A           77 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH  156 (247)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEE
T ss_pred             CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEc
Confidence            5677888888888888764    4999999999999998542                    259999999999999997


Q ss_pred             cCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCc
Q 024224          108 VAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE  179 (270)
Q Consensus       108 ~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~  179 (270)
                      +          +++||++|+||.++++.+++||++|+||++++| +++.|+++++|+++++|..+  +|+..
T Consensus       157 ~----------~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV-~~~~I~~~~~v~~g~vv~~~--~pa~~  215 (247)
T 1qre_A          157 G----------PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVTSQ--AEADK  215 (247)
T ss_dssp             E----------EEEECTTCEECTTCEEEEEEECTTCEECTTCEE-ESCEECTTBEECTTCEECSH--HHHHT
T ss_pred             C----------CcEECCCCEECCCCEEeceEECCCCEECCCCEE-CCeEeCCCCEECCCCEEecC--cchhh
Confidence            4          699999999999998877999999999999999 99999999999999999876  56554

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.72  E-value=2.2e-16  Score=137.61  Aligned_cols=107  Identities=20%  Similarity=0.317  Sum_probs=73.4

Q ss_pred             ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCC----CCCccCeEECCCcEE
Q 024224           53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNL----SGKVLPTTIGDNVTV  128 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~----~~~~~~~~Ig~~v~I  128 (270)
                      ..|++++.|+|++.|.+++.||++|.|+++|+|.+   ++.||++|.|+++|+|.....++    ....+++.||++|.|
T Consensus         3 ~~i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~---~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I   79 (273)
T 3fs8_A            3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRD---NVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALI   79 (273)
T ss_dssp             CEECTTCEECTTCEECSSEEECTTCEECTTCEECS---SEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEE
T ss_pred             cccCCCeEECCCcEECCCCEECCCcEECCCCEECC---CCEECCCcEECCCcEeCCccccccccccccccceEECCCCEE
Confidence            46889999999999999999999999999999984   58999999999999998642221    112234777777777


Q ss_pred             CcCcEEe-ceEECCCcEECCccEECCCcEECCCcE
Q 024224          129 GHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGM  162 (270)
Q Consensus       129 ~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v  162 (270)
                      +++++|. ++.||+++.||.++.|.+++.||+++.
T Consensus        80 ~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~  114 (273)
T 3fs8_A           80 RTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVK  114 (273)
T ss_dssp             CTTCEEESSCEECTTCEECSSCEECSSCEECSSCE
T ss_pred             CCCCEEeCCCEECCCCEECCceEECCCCEECCCCE
Confidence            7666663 344444444444444433333333333

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.70  E-value=1.2e-16  Score=133.54  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=88.4

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE----eceEECCCcEE
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL----HGCTVEDEAFV  145 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i----~~~~Ig~~~~I  145 (270)
                      ...||+++.|++++.|.+ ..++.||++|.|+++|+|.+          +++||++|.|++++.|    ++++||++|+|
T Consensus        32 ~~~ig~~~~I~~~~~i~~-~~~v~IG~~~~I~~~~~I~~----------~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I  100 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYN-PGVISIGNNVRIDDFCILSG----------KVTIGSYSHIAAYTALYGGEVGIEMYDFANI  100 (205)
T ss_dssp             CSEECSSEEEBTTSEEES-GGGEEECSSEEECTTCEEEE----------EEEECSSEEECTTCEEEEEEEEEEECTTCEE
T ss_pred             CeEECCCCEECCCeEEcc-CCeeEECCCCEECCCCEEcc----------ceEECCCCEECCCeEEEcCCccEEECCCCEE
Confidence            345777777777887773 24688888888888888864          7888888888888888    34888888888


Q ss_pred             CCccEE-------------------------CCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          146 GMGATL-------------------------LDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       146 g~~a~I-------------------------~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      +++++|                         ..+++||++|+||++++|.++++|+++++++ ..+.+.+++++.
T Consensus       101 g~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig-~gsvV~~~v~~~  174 (205)
T 3vbi_A          101 SSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVG-AMSMVKESLDDW  174 (205)
T ss_dssp             CTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEEC-TTCEECSCBCTT
T ss_pred             CCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEc-CCCEECCccCCC
Confidence            888888                         4678888888888888888888888887765 346666665543

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.70  E-value=1.9e-16  Score=129.10  Aligned_cols=114  Identities=23%  Similarity=0.375  Sum_probs=100.0

Q ss_pred             CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      ...||+++.|++++.|.++   +.||++|.|++++.|.+.. .++.||++|.|++++.|.           +++||++|+
T Consensus        28 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~~~~   96 (173)
T 1v3w_A           28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH-----------GAKVGNYVI   96 (173)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEE-----------SCEECSSEE
T ss_pred             CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEEC-----------CCEECCCCE
Confidence            5678999999999999875   9999999999999998532 358999999999999996           689999999


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecCCCccCCC
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQNTRIPSG  178 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~~~I~~~  178 (270)
                      |+.++.+. +++||++|+||++++|.++..|++++++ |..+.+.++  +++.
T Consensus        97 Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~--~~~~  147 (173)
T 1v3w_A           97 IGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQ--LTEE  147 (173)
T ss_dssp             ECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEE--CCHH
T ss_pred             ECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEecc--CCHH
Confidence            99999875 5999999999999999999999999999 677777765  5543

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.68  E-value=4.3e-16  Score=137.89  Aligned_cols=139  Identities=20%  Similarity=0.263  Sum_probs=90.2

Q ss_pred             CCCceeCCCCEECCCcEEec-----CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC
Q 024224           50 DKAPAVDKDAFVAPSASIIG-----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD  124 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~-----~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (270)
                      .+.+.|+++++|++++.|.+     ++.||++|.|.++++|..   .+.||++|.|+.++.|.+..++  ...++++||+
T Consensus       133 ~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~---~~~IG~~v~I~~~~~i~~~~~~--~~~~~v~IGd  207 (304)
T 3eg4_A          133 VPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGS---CAQIGKNVHLSGGVGIGGVLEP--MQAGPTIIED  207 (304)
T ss_dssp             CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECT---TCEECTTCEECTTCEECCCCSS--TTCCCCEECT
T ss_pred             cCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECC---CCccCCCcEECCCCEECCcccc--CccCCeEEcC
Confidence            34444455555555554444     444555555544444442   2456666666666655432221  2345899999


Q ss_pred             CcEECcCcEE-eceEECCCcEECCccEECCCc-------------EECCCcEECCCCeecCCCccCC--CcEEeecCcee
Q 024224          125 NVTVGHSAVL-HGCTVEDEAFVGMGATLLDGV-------------VVERHGMVAAGSLVRQNTRIPS--GEVWGGNPAKF  188 (270)
Q Consensus       125 ~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv-------------~Ig~~~vIgagsvV~~~~~I~~--~~iv~G~pa~~  188 (270)
                      +|+||.+++| .+++||++|+||++++|.+++             .|+++++|++|++|.++..=.|  +++....+.+.
T Consensus       208 ~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~kd~~G~P~g~~~~~A~iik~  287 (304)
T 3eg4_A          208 NCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVPGENWGPSLYCAVIVKR  287 (304)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECCCCTTSSCCCEEEEEEEEEE
T ss_pred             CCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEecCCCCCCcCcccccceEEEEE
Confidence            9999999965 579999999999999999876             6888888888888888621123  56666767776


Q ss_pred             ccCCC
Q 024224          189 LRKLT  193 (270)
Q Consensus       189 i~~~~  193 (270)
                      +...+
T Consensus       288 ~~~~t  292 (304)
T 3eg4_A          288 ADEKT  292 (304)
T ss_dssp             CCHHH
T ss_pred             ccccc
Confidence            65433

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.68  E-value=4.1e-16  Score=129.40  Aligned_cols=113  Identities=14%  Similarity=0.256  Sum_probs=95.8

Q ss_pred             ccCCCceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCC
Q 024224           48 IFDKAPAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKS  111 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~  111 (270)
                      .+...+.||+++.|+|++.|.+   ++.||++|.|++++.|....             ..+.||+++.|+.++.+.    
T Consensus        26 ~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~----  101 (194)
T 3tv0_A           26 EIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQ----  101 (194)
T ss_dssp             EEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEEC----
T ss_pred             EEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEe----
Confidence            3445678888889999888863   58999999999999996321             368899999999999986    


Q ss_pred             CCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224          112 NLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus       112 ~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                             .+.||++|+|+.+++|. +++||++|+||++|+|.+++.|+++++|.++....+
T Consensus       102 -------~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~~  155 (194)
T 3tv0_A          102 -------AMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRR  155 (194)
T ss_dssp             -------CSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCEE
T ss_pred             -------eeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEEe
Confidence                   68999999999999875 599999999999999999999999999976665444

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.66  E-value=1e-15  Score=124.71  Aligned_cols=111  Identities=15%  Similarity=0.314  Sum_probs=97.3

Q ss_pred             CCceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           51 KAPAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ....||+++.|++++.|.++   +.||++|.|++++.|.... .++.||++|.|++++.|.           +++||++|
T Consensus        29 ~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~-----------~~~Ig~~~   97 (173)
T 1xhd_A           29 GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH-----------SCHIKKDA   97 (173)
T ss_dssp             EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE-----------SCEECTTC
T ss_pred             CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEe-----------CCEECCCC
Confidence            35678899999999988875   8999999999999998432 368999999999999996           68999999


Q ss_pred             EECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecCC
Q 024224          127 TVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQN  172 (270)
Q Consensus       127 ~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~  172 (270)
                      +|+.++++. +++||++|+||++++|.++..|++++++ |..+.+.++
T Consensus        98 ~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~  145 (173)
T 1xhd_A           98 LIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRE  145 (173)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEE
T ss_pred             EEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCC
Confidence            999999876 5999999999999999999999999998 666777765

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.66  E-value=8.2e-16  Score=134.50  Aligned_cols=134  Identities=22%  Similarity=0.283  Sum_probs=94.2

Q ss_pred             CCceeCCCCEECCCcEEe-----cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           51 KAPAVDKDAFVAPSASII-----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~-----~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.|+++++|++++.|.     .++.||++|.|+++++|..   .+.||++|.|+.++.|.+..++.  ..++++||++
T Consensus       109 p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~---~~~IG~~v~I~~~~~i~g~~~~~--~~~~v~IGd~  183 (276)
T 3gos_A          109 PPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGS---CAQIGKNVHLSGGVGIGGVLEPL--QANPTIIEDN  183 (276)
T ss_dssp             TTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECT---TCEECTTCEECTTCEECCCCSST--TSCCCEECTT
T ss_pred             CCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECC---CCEECCCCEECCCCEECCccccC--CCCCeEECCC
Confidence            334444445555444443     4677777777777777752   36888888888888885432211  2458999999


Q ss_pred             cEECcCcEEe-ceEECCCcEECCccEECCCcEECCCc-------EECCCCeec-CCCccC----CCcEEeecCceeccC
Q 024224          126 VTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHG-------MVAAGSLVR-QNTRIP----SGEVWGGNPAKFLRK  191 (270)
Q Consensus       126 v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~-------vIgagsvV~-~~~~I~----~~~iv~G~pa~~i~~  191 (270)
                      |+||.+++|. +++||++|+||++|+|.+++.|++++       .|.++++|. .+  +|    +++.......+.+..
T Consensus       184 v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~--~P~~~g~~~~~~A~iik~~~~  260 (276)
T 3gos_A          184 CFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGN--LPSKDGSYSLYCAVIVKKVDA  260 (276)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEE--EECTTSSCEEEEEEEEEECCC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCC--ccCCCCcccccccEEEEEcCh
Confidence            9999999875 69999999999999999999999988       899999984 42  44    444444444444433

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.65  E-value=1.2e-15  Score=125.60  Aligned_cols=111  Identities=23%  Similarity=0.355  Sum_probs=94.6

Q ss_pred             CCCceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcC--------CCceEECCCCEECCCCEEEcCCCCCCCCcc
Q 024224           50 DKAPAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGD--------VNSISVGSGTNIQDNSLVHVAKSNLSGKVL  118 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~--------~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~  118 (270)
                      .....||++++|++++.|.++   +.||++|.|++++.|..+        ..+++||++|.|+++++|.           
T Consensus        31 ~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~-----------   99 (187)
T 3r3r_A           31 IGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLH-----------   99 (187)
T ss_dssp             EEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEE-----------
T ss_pred             ECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEe-----------
Confidence            446788999999999999875   499999999999999532        3579999999999999997           


Q ss_pred             CeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecC
Q 024224          119 PTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQ  171 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~  171 (270)
                      +++||++|+|+.+++|. +++||++|+||++++|.++..|++++++ |..+.+.+
T Consensus       100 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~  154 (187)
T 3r3r_A          100 GCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIR  154 (187)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEE
T ss_pred             CcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcC
Confidence            69999999999999884 5999999999999999998999998875 44444444

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.65  E-value=1.3e-15  Score=125.57  Aligned_cols=111  Identities=28%  Similarity=0.391  Sum_probs=94.9

Q ss_pred             CCCceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcC--------CCceEECCCCEECCCCEEEcCCCCCCCCcc
Q 024224           50 DKAPAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGD--------VNSISVGSGTNIQDNSLVHVAKSNLSGKVL  118 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~--------~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~  118 (270)
                      .....||+++.|++++.|.+   .+.||++|.|++++.|...        ...+.||++|.|++++.|.           
T Consensus        35 ~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~-----------  103 (189)
T 3r1w_A           35 IGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLH-----------  103 (189)
T ss_dssp             EEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEE-----------
T ss_pred             eeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEe-----------
Confidence            44678899999999999984   4699999999999999852        3478999999999999997           


Q ss_pred             CeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC-CCCeecC
Q 024224          119 PTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA-AGSLVRQ  171 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg-agsvV~~  171 (270)
                      +++||++|+|+.++++ .++.||++|+||++++|.++..|+++++++ ..+.+.+
T Consensus       104 ~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~  158 (189)
T 3r1w_A          104 GCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVR  158 (189)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEE
T ss_pred             CcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCcccccc
Confidence            6899999999999987 469999999999999999989999988873 3344444

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.65  E-value=1.2e-15  Score=126.22  Aligned_cols=105  Identities=14%  Similarity=0.226  Sum_probs=90.8

Q ss_pred             ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe------ceEECC
Q 024224           68 IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH------GCTVED  141 (270)
Q Consensus        68 ~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~------~~~Ig~  141 (270)
                      ...+.||+++.|++++.|.+   ++.||++|.|+++++|....       ..++||++|.|++++.|.      +++||+
T Consensus        31 ~~~~~ig~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~-------~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~  100 (191)
T 3ixc_A           31 GVSPSVDSTAFIAGNARIIG---DVCIGKNASIWYGTVLRGDV-------DKIEVGEGTNIQDNTVVHTDSMHGDTVIGK  100 (191)
T ss_dssp             TBCCEECTTSEECTTCEEEE---EEEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEECC----CCEEECT
T ss_pred             CCCCEECCCCEECCCCEEeC---CcEECCCCEECCCCEEecCC-------CCeEECCCCEECCCCEEeecCCcCCeEECC
Confidence            45677888999999999984   68999999999999997422       267999999999999997      899999


Q ss_pred             CcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee
Q 024224          142 EAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG  183 (270)
Q Consensus       142 ~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G  183 (270)
                      +|+||+++.+.+ ++||++|+|+++++|.+++.|++++++..
T Consensus       101 ~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~  141 (191)
T 3ixc_A          101 FVTIGHSCILHA-CTLGNNAFVGMGSIVMDRAVMEEGSMLAA  141 (191)
T ss_dssp             TCEECTTCEECS-CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCEECCCCEEEC-CEECCCCEECCCCEEeCCeEECCCCEECC
Confidence            999999998864 99999999999999999888888887653

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.61  E-value=5.1e-15  Score=131.51  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             ceeCCCCEECCCcEE-----ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           53 PAVDKDAFVAPSASI-----IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        53 ~~i~~~~~I~~~~~i-----~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      +.|+.++.|++++.|     ..++.||++|.|..+++|..   .+.||++|.|+.++.|....++.  ...+++||++|+
T Consensus       152 a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~---~~~IG~~v~I~~~~~I~~~~~~~--~~~~v~IGd~v~  226 (316)
T 3tk8_A          152 AIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGS---CAQIGKNVHLSGGVGIGGVLEPL--QANPVIIEDNCF  226 (316)
T ss_dssp             CEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECT---TCEECTTCEECTTCEECCCCSST--TSCCCEECTTCE
T ss_pred             eEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECC---CCEECCCCEEcCCCEECCCcccc--cCCCcEECCCCE
Confidence            334444444444433     33555666666666555552   35677777777777766533322  234799999999


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCc-------EECCCCeec
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHG-------MVAAGSLVR  170 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~-------vIgagsvV~  170 (270)
                      ||.+++|. +++||++|+||++|+|.+++.|++.+       .|.++++|.
T Consensus       227 IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVv  277 (316)
T 3tk8_A          227 IGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVV  277 (316)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEE
T ss_pred             ECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEE
Confidence            99999874 69999999999999999999888877       788888874

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.60  E-value=3.2e-15  Score=129.01  Aligned_cols=118  Identities=14%  Similarity=0.228  Sum_probs=99.3

Q ss_pred             cCeEECCCCEEccCCEE-EcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe----ceEECCCc
Q 024224           69 GDVQVGRGSSIWYGCVL-RGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH----GCTVEDEA  143 (270)
Q Consensus        69 ~~v~IG~~~~I~~~~~I-~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~----~~~Ig~~~  143 (270)
                      +++.|++++.|.+.+.+ .++.+.+.||++|.|++++.|..        +..+.||++|.|++++.+.    .++||++|
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~--------g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~  133 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATK--------GSKVIIGRRTTIGAGFEVVTDKCNVTIGHDC  133 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEES--------SCEEEECTTCEECTTCEEECSSSEEEECTTC
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEcc--------CCEEEECCCCEECCCcEEEeCCCCeEECCCC
Confidence            46899999998886665 55667899999999999999974        2379999999999999998    79999999


Q ss_pred             EECCccEECCC-------------------cEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          144 FVGMGATLLDG-------------------VVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       144 ~Ig~~a~I~~g-------------------v~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      .||+++.|...                   ++||++|+||+++.|.++++|+++++++. -+.+.+++++.
T Consensus       134 ~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~Iga-gsvV~~~vp~~  203 (252)
T 3jqy_B          134 MIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGY-GSIVTKDVPSM  203 (252)
T ss_dssp             EECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECT-TCEECSCBCTT
T ss_pred             EEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECC-CCEECcccCCC
Confidence            99999998765                   79999999999999999999999987763 46666666653

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.60  E-value=7e-15  Score=136.69  Aligned_cols=127  Identities=15%  Similarity=0.258  Sum_probs=81.2

Q ss_pred             cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC-----CCC-CccCeEECCCcEECcCcEEe---
Q 024224           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN-----LSG-KVLPTTIGDNVTVGHSAVLH---  135 (270)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~-----~~~-~~~~~~Ig~~v~I~~~~~i~---  135 (270)
                      +.+.+++.||+++.|+++|.|.+   .+.||++|.|+++|+|.+..-.     ..+ .-++++||++|.|++++.+.   
T Consensus       263 ~~~~~~~~ig~~~~i~~~~~i~~---~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~  339 (459)
T 4fce_A          263 FDLRGELTHGRDITIDTNVIIEG---HVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGA  339 (459)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEE---EEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTC
T ss_pred             EEEeCcEEECCCcEECCCeeecc---ceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCc
Confidence            34556677777777777777763   3677777777777776531000     000 01223455555555444442   


Q ss_pred             --------------------------------ceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccC
Q 024224          136 --------------------------------GCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIP  176 (270)
Q Consensus       136 --------------------------------~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~  176 (270)
                                                      +++||++|+||+++++..       +++||++|+||++++|.++++|+
T Consensus       340 ~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig  419 (459)
T 4fce_A          340 ELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVA  419 (459)
T ss_dssp             EECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEEC
T ss_pred             EECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEEC
Confidence                                            125555666666666543       68999999999999999999999


Q ss_pred             CCcEEeecCceeccCCCHH
Q 024224          177 SGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       177 ~~~iv~G~pa~~i~~~~~~  195 (270)
                      +++++++ .+.+.+++++.
T Consensus       420 ~~~~iga-gsvV~~~v~~~  437 (459)
T 4fce_A          420 NGATIGA-GTTVTRDVAEN  437 (459)
T ss_dssp             TTCEECT-TCEECSCBCTT
T ss_pred             CCCEECC-CCEEccccCCC
Confidence            9998864 57777777654

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.60  E-value=6.3e-15  Score=136.87  Aligned_cols=141  Identities=9%  Similarity=0.147  Sum_probs=91.6

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-CC------CCccCeEECC
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-LS------GKVLPTTIGD  124 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-~~------~~~~~~~Ig~  124 (270)
                      .+++++.|++++.|.+++.|+.++.|+++|.|....  .++.||++|.|++++.|....-. ..      .....+.||+
T Consensus       261 ~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~  340 (456)
T 2v0h_A          261 DLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAA  340 (456)
T ss_dssp             EEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECT
T ss_pred             EEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECC
Confidence            455566666666666666666666666666665332  13446777777766666431100 00      0112334444


Q ss_pred             CcEECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcE
Q 024224          125 NVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEV  180 (270)
Q Consensus       125 ~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~i  180 (270)
                      +|.|++++.+                 .+++||++|+||+++++..       +++||++|+||++++|.++++|+++++
T Consensus       341 ~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~  420 (456)
T 2v0h_A          341 ETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGAT  420 (456)
T ss_dssp             TCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCE
T ss_pred             CCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCE
Confidence            4444443333                 2358999999999999976       899999999999999999999999998


Q ss_pred             EeecCceeccCCCHH
Q 024224          181 WGGNPAKFLRKLTDE  195 (270)
Q Consensus       181 v~G~pa~~i~~~~~~  195 (270)
                      +++ .+.+.+++++.
T Consensus       421 ig~-~s~v~~~v~~~  434 (456)
T 2v0h_A          421 IGA-GTTITRDVGEN  434 (456)
T ss_dssp             ECT-TCEECSCBCTT
T ss_pred             ECC-CCEECCCcCCC
Confidence            876 46666666543

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.59  E-value=4.2e-16  Score=145.99  Aligned_cols=125  Identities=15%  Similarity=0.233  Sum_probs=108.8

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      ..+.||+++.|++++.| +++.||++|.|+++|+|.    +++||++|.|+++++|.           .++||++|+||+
T Consensus       290 g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~----~~vIG~~~~Ig~~a~I~-----------gv~IGd~v~IG~  353 (496)
T 3c8v_A          290 GDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYII----NSRLERNCVTAHGGKII-----------NAHLGDMIFTGF  353 (496)
T ss_dssp             SSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEE----EEEEEESCEECTTCEEE-----------SEEEEETCEECT
T ss_pred             CCeEECCCCEECCCcEE-eceEecCCCEECCCceEe----ceEeCCCCEECCCcEEc-----------CceECCCcEECC
Confidence            45678899999999988 789999999999999998    57999999999999997           599999999999


Q ss_pred             CcEEec-----eEECCCcEECCccEEC--CCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224          131 SAVLHG-----CTVEDEAFVGMGATLL--DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT  193 (270)
Q Consensus       131 ~~~i~~-----~~Ig~~~~Ig~~a~I~--~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~  193 (270)
                      +++|.+     ++||++|+||++|+|.  ++..|+++++++ |+ |.....++.+++..|.|+++.+.+.
T Consensus       354 ~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~-G~-v~~~~~l~~~~~~~~~~~~i~~~~~  421 (496)
T 3c8v_A          354 NSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVW-GY-IRNKADLAAHSISFEEFAKVDGEVT  421 (496)
T ss_dssp             TCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEEC-SE-ESSHHHHHHSEEEHHHHTTCEEEEE
T ss_pred             CCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEE-EE-eccCccccccccccccHHHHHhHhc
Confidence            998875     4999999999999999  899999999998 44 5554457888899999988776543

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.59  E-value=1.6e-14  Score=129.29  Aligned_cols=142  Identities=12%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             ccCC-CceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC-----CCC--CccC
Q 024224           48 IFDK-APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN-----LSG--KVLP  119 (270)
Q Consensus        48 ~~~~-~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~-----~~~--~~~~  119 (270)
                      ++.. .+.+++++.|.+++.|.+++.||++|.|+++|.|. +   ++||+++.|+++++|..+.-.     +.+  ...+
T Consensus        60 ~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~---~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~  135 (334)
T 2pig_A           60 WIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-R---ADISDGARISDNVTIQSSSVREECAIYGDARVLNQ  135 (334)
T ss_dssp             EECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-S---CEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred             EEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-e---EEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence            3444 66777788888888888888888888888888887 3   588888888888877643200     000  0112


Q ss_pred             eEECC----------CcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC----CccCCCcEEeecC
Q 024224          120 TTIGD----------NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN----TRIPSGEVWGGNP  185 (270)
Q Consensus       120 ~~Ig~----------~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~----~~I~~~~iv~G~p  185 (270)
                      +.|.+          ++.|++++++..+.|+++|.|+++|.|. +++|++++.|+++++|..+    ..|++++.+.|+ 
T Consensus       136 s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~-  213 (334)
T 2pig_A          136 SEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGH-  213 (334)
T ss_dssp             CEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCSSCCEEECTTCEECTT-
T ss_pred             EEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCceeccEEECCCcEEeee-
Confidence            22211          1335555555566677777777777775 6777777777777777665    248999999998 


Q ss_pred             ceeccCCCHH
Q 024224          186 AKFLRKLTDE  195 (270)
Q Consensus       186 a~~i~~~~~~  195 (270)
                      |++.|...++
T Consensus       214 a~V~R~~~~~  223 (334)
T 2pig_A          214 ARVIAGTEED  223 (334)
T ss_dssp             CEEECCSSTT
T ss_pred             EEEeccCCHH
Confidence            9999877654

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.58  E-value=1.9e-15  Score=136.49  Aligned_cols=106  Identities=16%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccC-CEEEcCCCceE-ECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224           57 KDAFVAPSASIIGDVQVGRGSSIWYG-CVLRGDVNSIS-VGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL  134 (270)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~-~~I~~~~~~v~-IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i  134 (270)
                      ++++|++++.|.+++.||++|.|+++ ++|..+   +. ||+ |.|+.  +|.          ++++||++|.|++++.+
T Consensus       216 ~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~n---v~vIG~-~~I~~--~Ig----------~~vvIGdnv~Ig~ga~I  279 (387)
T 2rij_A          216 DNTRILESSKVRMGASLAAGTTIMPGASYVNFN---AGTTGA-CMVEG--RIS----------SSAIVGEGSDVGGGASI  279 (387)
T ss_dssp             TTCEESCGGGBBTTCBCCTTCEECSSSCEECTT---CEESSC-CEECS--EEC----------TTCEECTTCEECTTCEE
T ss_pred             CCEEEcCCCEECCCeEEcCCCEEeCCeeEECCC---cEEECC-EEEee--EEC----------CCCEECCCCEECCCceE
Confidence            47888888888888889999999886 888632   34 777 77753  443          47899999999999964


Q ss_pred             ----ec-----eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee
Q 024224          135 ----HG-----CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG  183 (270)
Q Consensus       135 ----~~-----~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G  183 (270)
                          .+     ++||++||||++|+  ++++||++|+||+|++|+++  ++.+.+ .|
T Consensus       280 ~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~d--v~i~~~-~G  332 (387)
T 2rij_A          280 LGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEG--TKFLLK-DA  332 (387)
T ss_dssp             CCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTT--CEEEEC-CH
T ss_pred             cceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCC--ceeeec-CC
Confidence                33     89999999999999  89999999999999999999  554444 55

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.58  E-value=1.9e-14  Score=135.79  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=102.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC------------------------CceEECCCCEECC
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV------------------------NSISVGSGTNIQD  102 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~------------------------~~v~IG~~~~I~~  102 (270)
                      ..+.....|+.++.|.+++.+.+.+.+|.+|.+++++.+....                        ....|+.++.|++
T Consensus       278 ~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~  357 (501)
T 3st8_A          278 TWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGA  357 (501)
T ss_dssp             EEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECT
T ss_pred             ccccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEcc
Confidence            3445667899999999999999999999999888888774210                        0112222222222


Q ss_pred             CCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCcc
Q 024224          103 NSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRI  175 (270)
Q Consensus       103 ~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I  175 (270)
                      ++.|....     ....++||+++.|++.+.+.+++||++|.||+++++..       +++||++|+||+++.+..+++|
T Consensus       358 ~v~IG~~v-----~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~I  432 (501)
T 3st8_A          358 DGKLGAFV-----EVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTI  432 (501)
T ss_dssp             TCEEEETE-----EEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEE
T ss_pred             ccccCCeE-----EEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEE
Confidence            22222111     01367888888888888889999999999999998843       4899999999999999999999


Q ss_pred             CCCcEEeecCceeccCCCHHH
Q 024224          176 PSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       176 ~~~~iv~G~pa~~i~~~~~~~  196 (270)
                      ++++++++ -+.+.+++++..
T Consensus       433 g~~~~i~a-gs~v~~dvp~~~  452 (501)
T 3st8_A          433 GDGAYTGA-GTVVREDVPPGA  452 (501)
T ss_dssp             CTTCEECT-TCEECSCBCTTC
T ss_pred             CCCCEECC-CCEECcccCCCC
Confidence            99987763 456666666553

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.57  E-value=5.4e-14  Score=118.74  Aligned_cols=102  Identities=17%  Similarity=0.281  Sum_probs=84.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ..+.....++++++|++++.|.+++.||++|.|+++++|..   .++||++|.|+++++|..          +++||++|
T Consensus       106 a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~---~~~Ig~~~~i~~~~~i~~----------~v~Ig~~~  172 (220)
T 4ea9_A          106 AVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDH---DCRLGAACHLGPASALAG----------GVSVGERA  172 (220)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT---TCEECTTCEECTTCEECS----------SCEECTTC
T ss_pred             CEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECC---CCEECCCCEECCCCEEcC----------CCEECCCC
Confidence            34456677888888888888888899999999999998874   468999999999999964          79999999


Q ss_pred             EECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          127 TVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       127 ~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      +|+.++++. +++||++|+||++++|..+  +.+++++
T Consensus       173 ~Ig~~~~i~~~~~Ig~~~~igagsvv~~~--v~~~~~~  208 (220)
T 4ea9_A          173 FLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLA  208 (220)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEE
T ss_pred             EECCCCEEcCCcEECCCCEECCCCEEccc--cCCCcEE
Confidence            999999775 4999999999999999876  5666655

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.54  E-value=4.1e-14  Score=123.86  Aligned_cols=108  Identities=19%  Similarity=0.259  Sum_probs=83.9

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccC
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLP  119 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~  119 (270)
                      ..+...+.|++.++|.+++.|+.++.||.+++|..++.+....       ..++||++|.|+.+++|.+..++  +..+.
T Consensus       156 ~vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~--~~~~~  233 (332)
T 3fsy_A          156 YVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSG--GGTHV  233 (332)
T ss_dssp             TCCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC-----CCB
T ss_pred             eecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCC--CCccc
Confidence            3456677788888888888877777777777766655553211       12789999999999999764332  33467


Q ss_pred             eEECCCcEECcCcEEeceEECCCcEECCccEECCCcEE
Q 024224          120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVV  157 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~I  157 (270)
                      ++||++|+||.+++| +++||++|+||+|++|.+++.|
T Consensus       234 V~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtkdt~I  270 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL-GISLGDDCVVEAGLYVTAGTRV  270 (332)
T ss_dssp             CEECTTCEECTTCEE-CSCBCSSCEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence            999999999999999 9999999999999999999877

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.54  E-value=4.5e-14  Score=118.90  Aligned_cols=118  Identities=14%  Similarity=0.234  Sum_probs=97.1

Q ss_pred             CeEECCCCEEccC-CEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE----eceEECCCcE
Q 024224           70 DVQVGRGSSIWYG-CVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL----HGCTVEDEAF  144 (270)
Q Consensus        70 ~v~IG~~~~I~~~-~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i----~~~~Ig~~~~  144 (270)
                      .+.||+++.|.+. +.|.++...+.||++|.|++++.|...       ...+.||++|.|++.+++    ..++||++|.
T Consensus        36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~-------~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~  108 (215)
T 2wlg_A           36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHS-------DCSLQIQAKTTMGNGEITIAEKGKISIGKDCM  108 (215)
T ss_dssp             EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECT-------TCEEEECTTCEECSEEEEECTTCEEEECTTCE
T ss_pred             EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcC-------CceEEEcCCCEECCEEEEEeCCCCEEECCCCE
Confidence            4778888888887 567765457999999999999999742       125999999999996665    5699999999


Q ss_pred             ECCccEECCC-------------------cEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          145 VGMGATLLDG-------------------VVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       145 Ig~~a~I~~g-------------------v~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      |++++.|...                   ++||++|+||++++|.++++|+++++++. .+.+.+++++.
T Consensus       109 Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIga-gsvV~~~vp~~  177 (215)
T 2wlg_A          109 LAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGS-HTVLYKSFKEP  177 (215)
T ss_dssp             ECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECT-TCEECSCCCCC
T ss_pred             EcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECC-CCEEcCccCCC
Confidence            9999999753                   79999999999999999999999988764 46666666543

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.54  E-value=1.4e-14  Score=128.16  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=81.2

Q ss_pred             CCceeCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEE
Q 024224           51 KAPAVDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTV  128 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I  128 (270)
                      ....|++++.|++++.|  +.++.||++|.|+++|.|..   +++||+++.+++++++....      ...++||++|+|
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~---~vtIG~~~~ig~~~~i~~~~------~~~~~IGd~v~I  232 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQ---SVTLGAMHFQEEGGVIKRGT------KRHPTVGDYVTI  232 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECT---TCEEECCCCCCTTCCCCCCS------SCSCEECSSCEE
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECC---CcEEeCCcEECCCceEcCCC------ccCCEECCCCEE
Confidence            34567888888888888  55788888888888888873   46888888888888876533      235799999999


Q ss_pred             CcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecCCCccCCC
Q 024224          129 GHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQNTRIPSG  178 (270)
Q Consensus       129 ~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~~~I~~~  178 (270)
                      |.+|+|. +++||++|+||+||+|.+++..+..+++ |..+.+.++  +++.
T Consensus       233 Gaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~--~~~~  282 (313)
T 3q1x_A          233 GTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKP--CTTK  282 (313)
T ss_dssp             CTTCEEESSCEECSSEEECTTCEECSCBCSSEEC------------------
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEee--Cccc
Confidence            9999765 5999999999999999998666555555 788888876  5544

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.53  E-value=1.7e-14  Score=134.10  Aligned_cols=116  Identities=17%  Similarity=0.377  Sum_probs=86.6

Q ss_pred             CCCceeCCCCEECCCcEEe----cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           50 DKAPAVDKDAFVAPSASII----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      .+...|++++.|+|++.|.    .++.||++|+|+. +.|.    +++||++|.|+++|.|..          .+.++++
T Consensus       306 ~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~----~~~Ig~~~~Ig~~~~I~~----------~~~~~~~  370 (451)
T 1yp2_A          306 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIED----------SLLMGAD  370 (451)
T ss_dssp             CSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE----SCEECTTCEECTTCEEES----------CEECCCS
T ss_pred             CCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe----ccEECCCCEECCCCEEcC----------ceEECCC
Confidence            3455667777777776551    2456666666654 5554    579999999999999985          4455553


Q ss_pred             ------------------cEECcCcEEeceEECCCcEECCccEECCC------cEECCCcEECCCC-eecCCCccCCCcE
Q 024224          126 ------------------VTVGHSAVLHGCTVEDEAFVGMGATLLDG------VVVERHGMVAAGS-LVRQNTRIPSGEV  180 (270)
Q Consensus       126 ------------------v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~g------v~Ig~~~vIgags-vV~~~~~I~~~~i  180 (270)
                                        +.||.++.+.+++||++|+||++++|..+      .+||++++||+++ +|+.++.|+++++
T Consensus       371 ~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsv  450 (451)
T 1yp2_A          371 YYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  450 (451)
T ss_dssp             SCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             CcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCcc
Confidence                              89999999999999999999999999865      3788899998886 4666666666664

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.52  E-value=1.5e-13  Score=113.94  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-
Q 024224           57 KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-  135 (270)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-  135 (270)
                      ++++|++++.|.+++.||++|.|++++.|..   .+.||++|.|++++.|..          +++||++|+|+.++++. 
T Consensus        94 ~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~---~~~Ig~~~~I~~~~~i~~----------~~~Ig~~~~Ig~~~~i~~  160 (194)
T 3bfp_A           94 AGILIMPYVVINAKAKIEKGVILNTSSVIEH---ECVIGEFSHVSVGAKCAG----------NVKIGKNCFLGINSCVLP  160 (194)
T ss_dssp             SCCEECTTCEECTTCEECTTCEECTTCEECT---TCEECTTCEECTTCEECT----------TCEECTTCEECTTCEECT
T ss_pred             CCcEEcCCCEECCCCEECCCCEECCCCEEcC---CCEECCCCEECCCCEECC----------CcEECCCCEEcCCCEECC
Confidence            4444444444444555555555555555542   245555555555555542          46666666666666543 


Q ss_pred             ceEECCCcEECCccEECCC
Q 024224          136 GCTVEDEAFVGMGATLLDG  154 (270)
Q Consensus       136 ~~~Ig~~~~Ig~~a~I~~g  154 (270)
                      +++||++++||++++|.++
T Consensus       161 ~~~Ig~~~~Igagsvv~~~  179 (194)
T 3bfp_A          161 NLSLADDSILGGGATLVKN  179 (194)
T ss_dssp             TCEECTTCEECTTCEECSC
T ss_pred             CCEECCCCEECCCCEEccc
Confidence            3666666666666666554

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.52  E-value=1.2e-13  Score=118.17  Aligned_cols=106  Identities=24%  Similarity=0.337  Sum_probs=77.1

Q ss_pred             CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224           51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH  130 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~  130 (270)
                      ..+.|++++.|++++.|.+++.||++|.|+.++.|.   ++++||++|.|++++++.+..++  ....+++||++|+||.
T Consensus       102 ~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~---~~~~IG~~~~I~~~~~i~~~~~~--~~~~~~~Ig~~~~IG~  176 (240)
T 3r8y_A          102 DHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLG---GRATVGKNCHVGAGAVLAGVIEP--PSAKPVIVEDDVVIGA  176 (240)
T ss_dssp             SSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC---TTCEECTTCEECTTCEECCCCSC--TTSCCCEECTTCEECT
T ss_pred             CCcEECCCCEECCCCEECCCCEECCCCEECCCCEEC---CCCEECCCcEECCCcEECCCccC--CCCCCcEECCCCEECC
Confidence            344555555555555555666666666666666665   35789999999999988754322  1235699999999999


Q ss_pred             CcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224          131 SAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       131 ~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      +++| .+++||++|.|+++++|...  |.+++++
T Consensus       177 ~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~  208 (240)
T 3r8y_A          177 NVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVV  208 (240)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             CCEECCCcEECCCCEECCCCEECCC--cCCCcEE
Confidence            9988 67999999999999999875  5666665

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.49  E-value=3.2e-13  Score=125.93  Aligned_cols=142  Identities=18%  Similarity=0.300  Sum_probs=97.1

Q ss_pred             CceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEE
Q 024224           52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTI  122 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~I  122 (270)
                      .+.+++++.|++++.|.+++.|+.++.|+++|.|....  .++.||++|.|+ ++.|....-.       .......+.|
T Consensus       268 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~i  346 (468)
T 1hm9_A          268 ATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSL  346 (468)
T ss_dssp             GCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEE
T ss_pred             eeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEE
Confidence            34688888889899999999999999999999997432  234567766666 5555421100       0001123344


Q ss_pred             CCCcEECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCC
Q 024224          123 GDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSG  178 (270)
Q Consensus       123 g~~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~  178 (270)
                      |++|.|+.++.+                 .++.||++|+||+++++..       +++||++|+||++++|.++++|+++
T Consensus       347 g~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~  426 (468)
T 1hm9_A          347 GAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDN  426 (468)
T ss_dssp             CTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTT
T ss_pred             CCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCC
Confidence            444444333322                 2246788888888888865       7999999999999999999999999


Q ss_pred             cEEeecCceeccCCCHH
Q 024224          179 EVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       179 ~iv~G~pa~~i~~~~~~  195 (270)
                      +++++ .+.+.+++++.
T Consensus       427 ~~i~~-~s~v~~~v~~~  442 (468)
T 1hm9_A          427 SLVGA-GSTITKDVPAD  442 (468)
T ss_dssp             CEECT-TCEECSCBCTT
T ss_pred             CEECC-CCEECCCCCCC
Confidence            98765 57777776654

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.48  E-value=2.1e-13  Score=120.21  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=75.4

Q ss_pred             hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEE------cC-CCceEECCCCEECCCCEEEcCCCCCCCCccC
Q 024224           47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR------GD-VNSISVGSGTNIQDNSLVHVAKSNLSGKVLP  119 (270)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~------~~-~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~  119 (270)
                      ..++..+.|++.+.|.+++.|++++.|+.+++|..++.|.      +. .-.++||++|.|+++|+|.+..+.  ...+.
T Consensus       179 ~vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~--~~~~~  256 (347)
T 3r5d_A          179 YVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSG--GGNIV  256 (347)
T ss_dssp             TCCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC--------CCC
T ss_pred             eeccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCC--CCccc
Confidence            3445566666666666666666555555554444444332      10 013799999999999999753221  12347


Q ss_pred             eEECCCcEECcCcEEeceEECCCcEECCccEECCCcEE
Q 024224          120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVV  157 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~I  157 (270)
                      ++||++|+||.+++| +++||++|+||+|++|.+++.|
T Consensus       257 V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          257 ISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             CEECTTCEECTTCEE-CSCBCTTCEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence            999999999999999 9999999999999999999887

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.43  E-value=2.3e-13  Score=115.00  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             ccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          117 VLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       117 ~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      .++++||++|+||.+|+|. +++||++|+||++|+|..+  |.+++++
T Consensus       117 ~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv  162 (220)
T 4hur_A          117 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIV  162 (220)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             cCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEE
Confidence            5689999999999999876 5999999999999999876  4565555

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.40  E-value=1.1e-12  Score=122.02  Aligned_cols=92  Identities=21%  Similarity=0.375  Sum_probs=73.4

Q ss_pred             CEECCCcEEec----CeEECCCCEEccCCEEEcCCCceEECCC------------------CEECCCCEEEcCCCCCCCC
Q 024224           59 AFVAPSASIIG----DVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKSNLSGK  116 (270)
Q Consensus        59 ~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~~  116 (270)
                      +.|++++.|.+    ++.||++|.|+++|.|.+   .+.+|++                  +.|++++.|.         
T Consensus       331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~---------  398 (451)
T 1yp2_A          331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED---SLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK---------  398 (451)
T ss_dssp             EEECTTCEEEEEEEESCEECTTCEECTTCEEES---CEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE---------
T ss_pred             eEECCCCEEcceEEeccEECCCCEECCCCEEcC---ceEECCCCcccccccccccccCceeEEECCCCEEe---------
Confidence            34444444443    899999999999999983   4677774                  9999999986         


Q ss_pred             ccCeEECCCcEECcCcEEec-------eEECCCcEECCccEECCCcEECCCcEECCCCee
Q 024224          117 VLPTTIGDNVTVGHSAVLHG-------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV  169 (270)
Q Consensus       117 ~~~~~Ig~~v~I~~~~~i~~-------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV  169 (270)
                        .++||++|+||+++++.+       .+||++||||+++     ++||++|+|++||+|
T Consensus       399 --~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          399 --RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII  451 (451)
T ss_dssp             --SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             --ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCccC
Confidence              688999999999998864       3678888888777     789999999999986

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.39  E-value=1.6e-12  Score=107.38  Aligned_cols=106  Identities=22%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             CCCceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224           50 DKAPAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT  127 (270)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~  127 (270)
                      +.+..||++++|++++.|..  .+.||++|.|++++.|...   ...++.+....++.+.          ++++||++|+
T Consensus        76 g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~---~~~~~~~~~~~~~~~~----------~~v~IG~~v~  142 (190)
T 3hjj_A           76 GYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTA---THPLHPVERNSGKEYG----------KPVKIGNNVW  142 (190)
T ss_dssp             STTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECE---ECCSSHHHHTSSEEEE----------CCEEECTTCE
T ss_pred             CCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecC---CccCchhhcccccccc----------CCeEECCCCE
Confidence            34455566666666666653  4566666666666666521   2333333334444443          3789999999


Q ss_pred             ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeec
Q 024224          128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVR  170 (270)
Q Consensus       128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~  170 (270)
                      ||.+++|. +++||++|+||++|+|..+  |.+++++ |..+.+.
T Consensus       143 IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i  185 (190)
T 3hjj_A          143 VGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVVGGNPAKVI  185 (190)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccCCEEe
Confidence            99999886 5999999999999999876  5666665 3334443

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.38  E-value=1.9e-12  Score=107.42  Aligned_cols=115  Identities=16%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             hhhhccCCCceeCC--CCEECCCcEEecCeEECCCCEEccCC--EEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCc
Q 024224           44 TLMNIFDKAPAVDK--DAFVAPSASIIGDVQVGRGSSIWYGC--VLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKV  117 (270)
Q Consensus        44 ~~~~~~~~~~~i~~--~~~I~~~~~i~~~v~IG~~~~I~~~~--~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~  117 (270)
                      .+...++..+.|.+  .+.+++++.|+.++.|+.+|.|..++  +|.   .++.||.+|.|...+........  .....
T Consensus        54 ~~~~~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG---~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~  130 (195)
T 3nz2_A           54 ELFGHLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIG---DHVLIGPSTQFYTASHSLDYRRRQAWETIC  130 (195)
T ss_dssp             HHSSEECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSSCEEEC---TTCEECTTCEEECEECCSSGGGTTTCCCEE
T ss_pred             HHHHhcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCceEEEC---CCCEECCCCEEecCCCCcccccccccceec
Confidence            34444566666666  34555666666666666666664443  343   24566666666554433221111  11123


Q ss_pred             cCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          118 LPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       118 ~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ++++||++|+||.+++|. +++||++|+||++|+|..+  |.+++++
T Consensus       131 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~  175 (195)
T 3nz2_A          131 KPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLV  175 (195)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEE
T ss_pred             CCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCcEE
Confidence            467777777777777664 4777777777777777654  4455544

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.36  E-value=1.5e-12  Score=107.24  Aligned_cols=108  Identities=22%  Similarity=0.319  Sum_probs=73.8

Q ss_pred             cCCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           49 FDKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ++....||++++|.+++.|.  ++++||++|.|++++.|......+   +......+..+          .++++||++|
T Consensus        71 ~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~---~~~~~~~~~~~----------~~~v~IGd~v  137 (185)
T 2p2o_A           71 YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPL---DPHERNSGLEY----------GKPVVIGHNV  137 (185)
T ss_dssp             CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCS---SHHHHHTCCBE----------ECCEEECSSC
T ss_pred             ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcC---ChhhcccCccc----------cCCeEEcCCe
Confidence            34566777777777777775  567888888888888876321000   00000012222          3478999999


Q ss_pred             EECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCC-CeecC
Q 024224          127 TVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAG-SLVRQ  171 (270)
Q Consensus       127 ~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgag-svV~~  171 (270)
                      +||.+++|. +++||++|+||++|+|.++  |+++++++++ +.+.+
T Consensus       138 ~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~vi~  182 (185)
T 2p2o_A          138 WIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKVIK  182 (185)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEEee
Confidence            999999887 6999999999999999986  7788888655 55443

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.35  E-value=4.5e-12  Score=111.95  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             EECCCCEECCCCEEEcCCCCCC-------CCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEEC
Q 024224           93 SVGSGTNIQDNSLVHVAKSNLS-------GKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus        93 ~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      +||++|.|+++|+|.+..+..+       .....++||++|+||.+++|. +++||++|+||+||+|..+  |++++++.
T Consensus       218 ~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~d--Vp~~svv~  295 (310)
T 3f1x_A          218 IIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTEN--VPAGSRIV  295 (310)
T ss_dssp             EECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSC--BCTTCEEC
T ss_pred             EEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCc--cCCCcEEE
Confidence            4556666666666655443211       223566999999999999876 6999999999999999875  56777664


Q ss_pred             C
Q 024224          165 A  165 (270)
Q Consensus       165 a  165 (270)
                      +
T Consensus       296 G  296 (310)
T 3f1x_A          296 Q  296 (310)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.32  E-value=4.2e-11  Score=99.55  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             ccCCCceeCCCCEE--CCCcEEecCeEECCCCEEccC--CEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeE
Q 024224           48 IFDKAPAVDKDAFV--APSASIIGDVQVGRGSSIWYG--CVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTT  121 (270)
Q Consensus        48 ~~~~~~~i~~~~~I--~~~~~i~~~v~IG~~~~I~~~--~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~  121 (270)
                      ..+..+.|.+.+.+  +.++.|+.++.|+.+|.|..+  ++|.   .++.||.+|.|...+........  .....++++
T Consensus        56 ~~g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~~v~IG---~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~  132 (199)
T 3ftt_A           56 TTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIG---DNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIH  132 (199)
T ss_dssp             SCCSSEEECSSEEESSSTTEEECSSEEECTTEEEECSSCEEEC---SSEEECTTCEEECEECCSSHHHHHTTEEEECCEE
T ss_pred             hcCCCeEEeCCEEEEecCCcEECCCeEECCCeEEecCCEEEEC---CCCEECCCCEEecCCCcCccccccccceecCCeE
Confidence            44555666666555  455666666666666666443  3443   24666666666543311110000  000124889


Q ss_pred             ECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecC
Q 024224          122 IGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQ  171 (270)
Q Consensus       122 Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~  171 (270)
                      ||++|+||.+++|. +++||++|+||++|+|..+  |.+++++ |.-+.+.+
T Consensus       133 IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pak~i~  182 (199)
T 3ftt_A          133 IGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKD--IPPHSLAVGNPCKVVR  182 (199)
T ss_dssp             ECSSEEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             EcCCcEEcCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEEECCEEEe
Confidence            99999999999775 5999999999999999885  4677665 44444433

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.30  E-value=1.1e-11  Score=103.38  Aligned_cols=121  Identities=14%  Similarity=0.217  Sum_probs=70.7

Q ss_pred             hhccCCCceeCCCCE--ECCCcEEecCeEECCCCEEccC--CEEEcCCCceEECCCCEECCCCEEEcCCCCC--CCCccC
Q 024224           46 MNIFDKAPAVDKDAF--VAPSASIIGDVQVGRGSSIWYG--CVLRGDVNSISVGSGTNIQDNSLVHVAKSNL--SGKVLP  119 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~--I~~~~~i~~~v~IG~~~~I~~~--~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~~~  119 (270)
                      ...++..+.|.+.+.  ++.++.|+.++.|+.+|.|...  +.|.   .++.||.+|.|.............  ....++
T Consensus        55 ~~~ig~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~~~~~i~IG---~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~  131 (203)
T 1krr_A           55 FATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIG---DNVLIAPNVTLSVTGHPVHHELRKNGEMYSFP  131 (203)
T ss_dssp             SSBCCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEEC---SSCEECSSCEEESEECCSSTTTCTTCCBEECC
T ss_pred             HhhcCCCcEEcCCeEEEeCCCeEECCeeEECCccEEecccceEEC---CCCEECCCCEEecCCcccchhhcccCceeCCC
Confidence            344566666766643  3566677777777777666543  3343   246777777775432211110000  012347


Q ss_pred             eEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecC
Q 024224          120 TTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQ  171 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~  171 (270)
                      ++||++|+||.+++|. +++||++|+||++|+|.++  |++++++ |..+.+.+
T Consensus       132 v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--vp~~~vv~G~PArvik  183 (203)
T 1krr_A          132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIR  183 (203)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             cEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--cCCCcEEEccCcEEec
Confidence            7888888888888765 4888888888888888765  5666654 33344433

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.29  E-value=1.2e-11  Score=111.76  Aligned_cols=106  Identities=19%  Similarity=0.283  Sum_probs=65.7

Q ss_pred             CceeCCCCEECCCcEEecCeEECCC-CEEccCCE------EEcC-CCceEECCCCEECCCCEEEcCCCCCCCCccCeEEC
Q 024224           52 APAVDKDAFVAPSASIIGDVQVGRG-SSIWYGCV------LRGD-VNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIG  123 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~-~~I~~~~~------I~~~-~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (270)
                      .+.|++++.|.+++.|+.++.|+.+ ++|++++.      |.+. ...++||++|.|+.+++|.+.-.  .+...+++||
T Consensus       217 gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~--g~~~~~VvIG  294 (387)
T 2rij_A          217 NTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGASILGVLS--GTSGNAISVG  294 (387)
T ss_dssp             TCEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSCCEECSEECTTCEECTTCEECTTCEECCBCS--STTCCBCEEC
T ss_pred             CEEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECCEEEeeEECCCCEECCCCEECCCceEcceec--CCCccCeEEe
Confidence            3445554444444444444444443 44444443      3210 02355666666666665432111  1122358999


Q ss_pred             CCcEECcCcEEeceEECCCcEECCccEECCCcEECCC
Q 024224          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERH  160 (270)
Q Consensus       124 ~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~  160 (270)
                      ++|+||.+++ .+++||++|+||++++|.+++.+.+.
T Consensus       295 dnv~IGagAv-~GV~IGdgavIGAGsVVt~dv~i~~~  330 (387)
T 2rij_A          295 KACLLGANSV-TGIPLGDNCIVDAGIAVLEGTKFLLK  330 (387)
T ss_dssp             TTCEECTTCE-ECSCBCTTCEECTTCEECTTCEEEEC
T ss_pred             CCCEECCCCc-CCcEECCCCEECCCCEECCCceeeec
Confidence            9999999999 89999999999999999999988765

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.28  E-value=7.4e-12  Score=102.74  Aligned_cols=101  Identities=21%  Similarity=0.318  Sum_probs=67.0

Q ss_pred             cCCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224           49 FDKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV  126 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v  126 (270)
                      ++....||++++|.+++.|.  +.++||++|.|++++.|......+..+.   -..+..+          .++++||++|
T Consensus        69 ~g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~---~~~~~~~----------~~~v~IG~~v  135 (182)
T 1ocx_A           69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVA---RNSGAEL----------GKPVTIGNNV  135 (182)
T ss_dssp             SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHH---HTTTCBE----------ECCEEECTTC
T ss_pred             eCCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhh---cccCccc----------cCCeEEeCCe
Confidence            34556677777777777764  4577777777777777752110000000   0011222          3478999999


Q ss_pred             EECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEEC
Q 024224          127 TVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       127 ~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      +|+.+++|. +++||++|+||++|+|.++  |+++++++
T Consensus       136 ~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv~  172 (182)
T 1ocx_A          136 WIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVG  172 (182)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEE
T ss_pred             EECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEEE
Confidence            999999875 5999999999999999876  67777664

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.27  E-value=6e-11  Score=106.04  Aligned_cols=45  Identities=11%  Similarity=0.206  Sum_probs=27.3

Q ss_pred             ECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecC
Q 024224          139 VEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP  185 (270)
Q Consensus       139 Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~p  185 (270)
                      |++++.|+ ++.|..+++|+.+|.|+ +++|..++.|.+++++.+.+
T Consensus       154 I~~~a~I~-~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~  198 (334)
T 2pig_A          154 IYDRATVN-HSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDK  198 (334)
T ss_dssp             ECTTCEEE-SCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCS
T ss_pred             ECCCCEEe-ccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCce
Confidence            44444443 24455556666666665 66666777777777776654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.25  E-value=6.1e-11  Score=102.70  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-c
Q 024224           58 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-G  136 (270)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~  136 (270)
                      ++.|+|++.|+.++.|+.+    .+++|.   ..++||++|.|+++++|.+....  ....+++||++|+||.+++|. +
T Consensus       137 g~~I~p~a~IG~g~~I~~~----~~vvIG---~~~~IG~~v~I~~gvtig~~~~~--~~~~~~~IGd~v~IGaga~Il~g  207 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHA----TGIVVG---ETSVIENDVSILQGVTLGGTGKE--SGDRHPKVREGVMIGAGAKILGN  207 (267)
T ss_dssp             SCEECTTCEECSSCEESSC----TTCEEC---TTCEECTTCEECTTCEEECCSSS--CSSCSCEECTTCEECTTCEEESS
T ss_pred             ceEeCCCCEECCCEEECCC----CceEEC---CeeEECCCCEEcCCcEECCCccc--CCCCCeEECCCeEEcCCCEEeCC
Confidence            3455555554444444421    244444   23567788888888888764321  113468999999999999775 5


Q ss_pred             eEECCCcEECCccEECCCcEECCCcEE-CCCCeec
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVR  170 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~  170 (270)
                      ++||++|+||+||+|.++  |++++++ |..+.+.
T Consensus       208 v~IG~~a~IGagsvV~~d--Vp~~~~v~G~PAr~i  240 (267)
T 1ssq_A          208 IEVGKYAKIGANSVVLNP--VPEYATAAGVPARIV  240 (267)
T ss_dssp             CEECTTCEECTTCEECSC--BCTTCEEETTTTEEC
T ss_pred             cEECCCCEECCCCEEccC--CCCCCEEEecCcEEe
Confidence            999999999999999876  5666655 4344443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.23  E-value=8.7e-11  Score=102.68  Aligned_cols=68  Identities=19%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ++||++|.|+.+|+|.+....  ...++++||++|+||.+++|. +++||++|+||+||+|.++  |.+++++
T Consensus       184 ~~IG~~v~I~~gvtLg~~~~~--~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~~s~v  252 (289)
T 1t3d_A          184 AVIENDVSILQSVTLGGTGKS--GGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTA  252 (289)
T ss_dssp             CEECSSCEECTTCEEECCSSS--CSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEE
T ss_pred             cEECCCCEEcCCcEECCCccc--cCCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC--CCCCCEE
Confidence            466778888888888753221  113468999999999999765 5999999999999999886  4566554

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.20  E-value=9.9e-11  Score=96.42  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             hhhccCCCceeCCCCEE--CCCcEEecCeEECCCCEEccCC--EEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCcc
Q 024224           45 LMNIFDKAPAVDKDAFV--APSASIIGDVQVGRGSSIWYGC--VLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVL  118 (270)
Q Consensus        45 ~~~~~~~~~~i~~~~~I--~~~~~i~~~v~IG~~~~I~~~~--~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~  118 (270)
                      +....++.+.|.+.+++  +.++.|+.++.|+.+|.|...+  .|.   .++.||.+|.|............  .....+
T Consensus        55 ~~~~ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~i~IG---~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~  131 (188)
T 3srt_A           55 LFGSVGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCKIEIG---DNVMLAPNVQIYTAYHPIDAQLRNSGIEYGS  131 (188)
T ss_dssp             HSSBCCSCEEECSCEEESSSTTEEECTTEEECTTEEEECSSCEEEC---SSCEECTTCEEECEECCSSHHHHHTTEEEEC
T ss_pred             HHhhcCCCCEEcCCEEEEeCCCeEECCcccccCceEEecCCceEEC---CeeEECCCcEEeeCCccCchhhccccceECC
Confidence            34455667777777766  3567777777777777776644  443   34677788887533221100000  000123


Q ss_pred             CeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecC
Q 024224          119 PTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQ  171 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~  171 (270)
                      +++||++|+||.+++|. +++||++|+||++|+|..+  |.+++++ |..+.+.+
T Consensus       132 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~  184 (188)
T 3srt_A          132 PVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIK  184 (188)
T ss_dssp             CEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEE
T ss_pred             CcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEec
Confidence            67888888888888775 4888888888888888765  3455443 44444433

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.19  E-value=5.4e-11  Score=109.58  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ  171 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~  171 (270)
                      +.||++|.| ++++|.           +++||++|.|+++|.|.+++||++|+||++|.|.. ++||++|+|++|++|.+
T Consensus       325 ~~ig~~~~I-~~~~i~-----------~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          325 SVVSGDCII-SGAALN-----------RSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             CEECSSCEE-ESCEEE-----------SCEECTTCEECTTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESS
T ss_pred             CEECCCCEE-cCCEEe-----------CcEEcCCCEECCCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeC
Confidence            577788888 788775           68899999999999999999999999999999975 99999999999999998


Q ss_pred             CCccC
Q 024224          172 NTRIP  176 (270)
Q Consensus       172 ~~~I~  176 (270)
                      +...|
T Consensus       392 ~~~~~  396 (420)
T 3brk_X          392 DPELD  396 (420)
T ss_dssp             CHHHH
T ss_pred             CCCCC
Confidence            75554

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.16  E-value=1.7e-10  Score=106.25  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             eeCCCCEECCCcEEec----------CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEEC
Q 024224           54 AVDKDAFVAPSASIIG----------DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIG  123 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~----------~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (270)
                      .+...+.++|.+.++.          ++.||++|+| +++.|.    +++||++|.|+++|.|.           +++||
T Consensus       298 ~i~~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~----~~~ig~~~~I~~~~~i~-----------~~~i~  361 (420)
T 3brk_X          298 PIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALN----RSLLFTGVRANSYSRLE-----------NAVVL  361 (420)
T ss_dssp             CCCCCCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEE----SCEECTTCEECTTCEEE-----------EEEEC
T ss_pred             ceeeccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEe----CcEEcCCCEECCCCEEc-----------ceEEc
Confidence            3445556666666655          7888888888 788885    37999999999999997           69999


Q ss_pred             CCcEECcCcEEeceEECCCcEECCccEECCCc
Q 024224          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGV  155 (270)
Q Consensus       124 ~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv  155 (270)
                      ++|.|++++.|.+++||++|.||++++|.+..
T Consensus       362 ~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~~  393 (420)
T 3brk_X          362 PSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDP  393 (420)
T ss_dssp             TTCEECTTCEEEEEEECTTCEECTTCEESSCH
T ss_pred             CCCEECCCCEEeceEECCCCEECCCCEEeCCC
Confidence            99999999999999999999999999997643

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.15  E-value=5.9e-10  Score=97.24  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ++||++|.|+++|+|.+..+.  .....++||++|+||.+++|. +++||++|+||+|++|..+  |.+++++
T Consensus       191 ~~IGd~v~I~~gvtIg~~~~~--~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kd--Vp~~svv  259 (287)
T 3mc4_A          191 AVVEDNVSILHGVTLGGTGKS--SGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKS--VPHNVTV  259 (287)
T ss_dssp             CEECSSCEEETTCEEEC-------CCCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             eEECCCCEEcCCCEEcCCccc--CCCcCCEECCCCEECCCCEECCCcEECCCCEECCCCEEccc--cCCCCEE
Confidence            355666666677777653221  112468999999999999776 5999999999999999875  4555554

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.05  E-value=8.9e-10  Score=92.41  Aligned_cols=103  Identities=19%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             cCCCceeCCCCEECC--------CcEE--------ecCeEECCCCEEccCCEEEcCCCceEECCC---------------
Q 024224           49 FDKAPAVDKDAFVAP--------SASI--------IGDVQVGRGSSIWYGCVLRGDVNSISVGSG---------------   97 (270)
Q Consensus        49 ~~~~~~i~~~~~I~~--------~~~i--------~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~---------------   97 (270)
                      ......||++++|.+        .+.+        .+.+.||++|.|+++++|..........++               
T Consensus        19 ~~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~   98 (212)
T 1xat_A           19 SNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAF   98 (212)
T ss_dssp             CCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGG
T ss_pred             ccCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccc
Confidence            356778999999986        2444        367999999999999998521100011111               


Q ss_pred             CEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224           98 TNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus        98 ~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      +.+++++.          ..++++||++|+||.+++|. +++||++|.||++|+|.++  |++++++
T Consensus        99 ~~i~~~~~----------~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~  153 (212)
T 1xat_A           99 AGAVNGYQ----------PAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIV  153 (212)
T ss_dssp             GGCCCCCC----------CCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             cccccCce----------ecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEE
Confidence            22222222          23479999999999999887 5999999999999999875  5676665

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.01  E-value=3.5e-10  Score=95.34  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             ccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEE
Q 024224          117 VLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       117 ~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      .++++||++|+||.+++|.+ ++||++|.||++++|...  |.+++++
T Consensus       116 ~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d--v~~~~~~  161 (219)
T 4e8l_A          116 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIV  161 (219)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             cCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCeEE
Confidence            45677888888888776653 777777777777777654  3555544

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.01  E-value=2.1e-10  Score=96.23  Aligned_cols=114  Identities=17%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             ccCCCceeCCCCEEC----------------CCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCC
Q 024224           48 IFDKAPAVDKDAFVA----------------PSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKS  111 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~----------------~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~  111 (270)
                      ...++..||++++|.                |.+.+.+++.||++|.|+++++|.........++++...+.+.+.....
T Consensus        20 v~~~~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~   99 (212)
T 3eev_A           20 VTNPNIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNF   99 (212)
T ss_dssp             CCCTTEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGG
T ss_pred             eeCCCeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCEEEeCCCCcccccceeeccceeeccccc
Confidence            345566667766664                3333456889999999999998753321123333333333322211000


Q ss_pred             ----CCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          112 ----NLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       112 ----~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                          ......++++||++|+||.+|+|. +++||++|+||++|+|..+  |++++++
T Consensus       100 ~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv  154 (212)
T 3eev_A          100 ADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVV  154 (212)
T ss_dssp             TTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             ccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEE
Confidence                011135689999999999999886 5999999999999999865  4666655

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.87  E-value=9.1e-10  Score=92.17  Aligned_cols=109  Identities=15%  Similarity=0.175  Sum_probs=66.4

Q ss_pred             CCceeCCCCEECCC-------------cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCC----C--
Q 024224           51 KAPAVDKDAFVAPS-------------ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAK----S--  111 (270)
Q Consensus        51 ~~~~i~~~~~I~~~-------------~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~----~--  111 (270)
                      ....||++++|.++             +.+++.+.||++|.|++++.|........+..  ....++++....    .  
T Consensus        28 ~~i~IG~~~~I~~~~~~~i~~~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~--~~~~~~~i~~~~~~~~~i~  105 (209)
T 1mr7_A           28 ENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDG--STYPFNLFGNGWEKHMPKL  105 (209)
T ss_dssp             TTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSS--CCCCGGGGCTTGGGGCCCG
T ss_pred             CCeEECCCcEEcCCCceEEeceEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccC--ccccceEECCccccccccc
Confidence            56677777777664             22344578888888888887652211111111  111222221110    0  


Q ss_pred             CCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224          112 NLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       112 ~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      ......++++||++|+||.+++|. +++||++|.||+++.|..+  |.+++++
T Consensus       106 ~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~  156 (209)
T 1mr7_A          106 DQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLA  156 (209)
T ss_dssp             GGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             ccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEE
Confidence            011235679999999999999776 4899999999999998875  4666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	2e-33
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	1e-29
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	1e-27
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	4e-15
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	2e-14
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	4e-13
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	2e-11
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	1e-10
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	4e-04
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-09
d3bswa1	193	b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylo	6e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	7e-07
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	1e-06
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	1e-06
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	1e-05
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	3e-04
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.002

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  118 bits (295), Expect = 2e-33
 Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 9/175 (5%)

Query: 46  MNIF---DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQD 102
           M I+    K P +   AFV  +A +IGDV +   +S+W   VLRGD+  I VG  +N+QD
Sbjct: 1   MAIYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQD 60

Query: 103 NSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGM 162
           N  +H +         PT IG+ VT+GH+A++HG  V +   +G+ + +LDG  +  H +
Sbjct: 61  NVSIHTSHGY------PTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVI 114

Query: 163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 217
           + AG++V  N  IP   +  G P K +R+LT+EEI +  ++A  Y  LA+ H   
Sbjct: 115 IGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKG 169

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score =  109 bits (272), Expect = 1e-29
 Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 20/192 (10%)

Query: 43  RTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISVGSGTNIQ 101
            T  N    AP +D  A++ P AS+IG+V +G    +     +R D    I VG  +N+Q
Sbjct: 13  VTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQ 72

Query: 102 DNSLVH-------------VAKSNLSGKVLPTTIGDNV-TVGHSAVLHGCTVEDEAFVGM 147
           D  ++H                  + GK     IG+NV     S V     V D+ F+GM
Sbjct: 73  DGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGM 132

Query: 148 GATLLDGVV----VERHGMVAAGSLVRQNTRIPSGEVWGGN-PAKFLRKLTDEEIAFISQ 202
            A +    V    V      A G  +     IP+G V      A  L ++TD+     + 
Sbjct: 133 QAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 192

Query: 203 SATNYSNLAQVH 214
            A  Y N+    
Sbjct: 193 EAVVYVNVHLAE 204

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score =  103 bits (256), Expect = 1e-27
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 50  DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA 109
           +K P +   AF+A   +I GDV VG  SSIW+  V+RGDV+   +G   N+QD   +H  
Sbjct: 10  EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQ- 68

Query: 110 KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV 169
                    P  + D+VTVGH  +LH C ++ +A +GMG+ +LDG  +     + AGSLV
Sbjct: 69  -----SPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLV 123

Query: 170 RQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVH 214
            Q  +IP   +  G PAK +R+LT E+   + +  T Y    Q +
Sbjct: 124 SQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYY 168

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 69.8 bits (170), Expect = 4e-15
 Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 16/183 (8%)

Query: 56  DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSG 115
           D   ++ P    +  + +G   SI  G            G+  +  + +           
Sbjct: 40  DCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMA------GNQGHRAEWASTFPFHFMHEE 93

Query: 116 KVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI 175
                 +      G         +  E ++G  A  + GV V    ++ + +LV  +  +
Sbjct: 94  PAFAGAVNGYQPAGD------TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--V 145

Query: 176 PSGEVWGGNPAKFLRK-LTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIE-FEKVLRK 233
               + GGNPA+ +RK  +D +I  + + A     LA + AA       +I    +  ++
Sbjct: 146 EPYAIVGGNPARTIRKRFSDGDIQNLLEMAWWDWPLADIEAAMPLLCTGDIPALYQHWKQ 205

Query: 234 KFA 236
           + A
Sbjct: 206 RQA 208

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 16/173 (9%)

Query: 23  DRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPS--ASIIGDVQVGRGSSIW 80
           DRL  R   + Y       H     I         +A++ P+       ++ +G      
Sbjct: 23  DRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFAN 82

Query: 81  YGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTV 139
           + CV+  DV  I +G    +     ++            T   D V     A L    T+
Sbjct: 83  FDCVML-DVCPIRIGDNCMLAPGVHIYT----------ATHPIDPVARNSGAELGKPVTI 131

Query: 140 EDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192
            +  ++G  A +  GV +  + +VA+G++V ++  +P   V GGNPA+ ++KL
Sbjct: 132 GNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL 182

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 24/164 (14%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSIS----VGSGTNIQDNSLVHVAK 110
                F+ P    + +V+VG  S          D   +     +     I       +  
Sbjct: 14  NKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKF--CSIGP 71

Query: 111 SNLSGKVLPTTIGDNVTVGHSA----------------VLHGCTVEDEAFVGMGATLLDG 154
                        D  T   +                 +     + ++ ++G    ++ G
Sbjct: 72  GVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPG 131

Query: 155 VVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIA 198
           V +    +VAA S+V ++  I    + GGNPA  +++  D++  
Sbjct: 132 VKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQDTI 173

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 59.9 bits (144), Expect = 2e-11
 Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 17/176 (9%)

Query: 27  CRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCV 84
                + +  E   R   +  +F     V ++A+V P        ++ +GR     +   
Sbjct: 32  MYEFNHSHPSEVEKRESLIKEMFAT---VGENAWVEPPVYFSYGSNIHIGRNFYANFNLT 88

Query: 85  LRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF 144
           +  D        G N+     V ++ +          +   +           T+ +  +
Sbjct: 89  IVDDYTVTI---GDNVLIAPNVTLSVTG-------HPVHHELRKNGEMYSFPITIGNNVW 138

Query: 145 VGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFI 200
           +G    +  GV +  + ++ AGS+V ++  IP   V  G P + +R++ D +  + 
Sbjct: 139 IGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREINDRDKHYY 192

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189
               V +   +G GA +L  + V ++  + A S+V     +P      G PA+ +
Sbjct: 188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIV 240

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 12  GFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDV 71
           G         +      ++ +    + ++   T     D+ P V +   +   A I+G++
Sbjct: 149 GIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNI 208

Query: 72  QVGRGSSIWYGCVLRGDV--NSISVGS 96
           +VG+ + I    V+   V   + + G 
Sbjct: 209 EVGKYAKIGANSVVLNPVPEYATAAGV 235

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 14/80 (17%)

Query: 67  IIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV 126
           + G +  GR   I    ++ G+V   ++G    I    ++             + IGD+ 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNV---TLGHRVKIGTGCVIK-----------NSVIGDDC 56

Query: 127 TVGHSAVLHGCTVEDEAFVG 146
            +    V+    +     +G
Sbjct: 57  EISPYTVVEDANLAAACTIG 76

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} Length = 193

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189
               +    F+G+ + +L  + +    ++  G+ + +N       V+ G PAK +
Sbjct: 141 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVGVPAKRM 193

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 47.1 bits (111), Expect = 7e-07
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 120 TTIGDNVTVGHSAVL--HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS 177
             +G +  V    +L      +E  A +     +   V +     V A      +  +  
Sbjct: 248 VLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIH--LRG 305

Query: 178 GEVWGGNPA 186
            +V  G   
Sbjct: 306 PKVINGEDR 314

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 190
           +   + +  FVG  +T++  V +  + +V AGS + ++  +P+  +  G   +  +
Sbjct: 141 YKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIAIGRGRQINK 194

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 25/145 (17%)

Query: 46  MNIFDKAPA----VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSIS--VGSGTN 99
              +DK P      D+  F      ++    V +G+ I    VL     +I   V  GT 
Sbjct: 80  TRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTM 139

Query: 100 IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG---------CTVEDEAFVGMGAT 150
           +  ++   V             IG NV +     + G           +ED  F+G  + 
Sbjct: 140 V--DTWATVGSC--------AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSE 189

Query: 151 LLDGVVVERHGMVAAGSLVRQNTRI 175
           +++GV+VE   +++ G  + Q+TRI
Sbjct: 190 VVEGVIVEEGSVISMGVYLGQSTRI 214

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVH 107
           +DK AFV P+A +     +G  + I   C++   V    +G GT ++ + +V+
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHV---EIGEGTVLKSHVVVN 51

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 55  VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS 114
           + K A ++P A I   V++G    I  G  L      + + +   +Q ++ V        
Sbjct: 3   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLD---EGVKLHNNVTLQGHTFVGKNTEIFP 59

Query: 115 GKVLPTTIGDNVTVGH 130
             VL T   D    G 
Sbjct: 60  FAVLGTQPQDLKYKGE 75

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 80  WYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTV 139
                   ++    +G G+     + +  A+    G  +    G        A      +
Sbjct: 90  GAHVGNFVEMKKARLGKGSKAGHLTYLGDAEI---GDNVNIGAGTITCNYDGANKFKTII 146

Query: 140 EDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE-VWGGNPAK 187
            D+ FVG    L+  V V +   +AAG+ V +N  +          P  
Sbjct: 147 GDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN--VGENALAISRVPQT 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.97
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.97
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.95
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.95
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.94
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.93
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.91
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.9
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.89
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.86
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.86
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.84
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.8
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.78
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.75
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.7
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.67
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.57
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.53
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.5
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.5
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.48
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.43
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.41
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.36
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.33
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.33
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.32
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.31
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.28
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.23
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.18
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.99
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.88

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.97  E-value=5.9e-31  Score=213.42  Aligned_cols=165  Identities=37%  Similarity=0.658  Sum_probs=154.8

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +.+.++.++||++++|+|++.|.+++.||++|.|+++|+|.++...+.||++|.+++++.+....+      ++++||++
T Consensus         6 ~~~~~~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~------~~~~ig~~   79 (172)
T d1xhda_           6 YPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQ------YPLILEDD   79 (172)
T ss_dssp             ECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTT------CCEEECTT
T ss_pred             EecCCcCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCc------CCeeeeee
Confidence            456788899999999999999999999999999999999987767899999999999999986443      47999999


Q ss_pred             cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT  205 (270)
Q Consensus       126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~  205 (270)
                      +.+.+.+.++++.|++++|||.+++|.++++||++|+|+++|+|++++.||++++++|+|||+++++++++.+++++..+
T Consensus        80 ~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~~~~~~~~~~~~~~  159 (172)
T d1xhda_          80 VTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRT  159 (172)
T ss_dssp             CEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred             eeeeeeecccccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEecCcEEECCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 024224          206 NYSNLAQVHAA  216 (270)
Q Consensus       206 ~~~~l~~~~~~  216 (270)
                      .|.++.+.|+.
T Consensus       160 ~y~~~~k~y~~  170 (172)
T d1xhda_         160 QYVEKGQYYKS  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=6.9e-30  Score=207.19  Aligned_cols=169  Identities=37%  Similarity=0.654  Sum_probs=155.7

Q ss_pred             hhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC
Q 024224           45 LMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD  124 (270)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (270)
                      ++++.++.+.|+++++|+|++.|.+++.||++|.|++++.|.++...+.||++|.+...+.+.....      +++.++.
T Consensus         3 ~y~~~g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~------~~~~~~~   76 (173)
T d1v3wa_           3 IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHG------YPTEIGE   76 (173)
T ss_dssp             EECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTT------BCEEECS
T ss_pred             cEECCCCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccC------CCcccCc
Confidence            4567789999999999999999999999999999999999997777899999999999999986432      4788999


Q ss_pred             CcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHH
Q 024224          125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSA  204 (270)
Q Consensus       125 ~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~  204 (270)
                      ++.+......+.+.||++||||.+|+|.++++||++|+|++||+|++++.||++++++|+|||+++++++.+.+++++..
T Consensus        77 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~~~~~~~~~~~~  156 (173)
T d1v3wa_          77 YVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNA  156 (173)
T ss_dssp             SCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred             ceeeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCCHHHHHHHHHHH
Confidence            99998888889999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 024224          205 TNYSNLAQVHAAENA  219 (270)
Q Consensus       205 ~~~~~l~~~~~~~~~  219 (270)
                      +.|.++.+.|.++.+
T Consensus       157 ~~y~~~~~~~~k~~k  171 (173)
T d1v3wa_         157 EIYVELAEKHIKGRK  171 (173)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999988866443

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.95  E-value=5.4e-27  Score=201.89  Aligned_cols=196  Identities=16%  Similarity=0.149  Sum_probs=140.7

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCC--C--------
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS--G--------  115 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~--~--------  115 (270)
                      .+.+++.+.|++++.|+|+++|++++.||++|.|+++++|.   .++.||++|.|.++++|....+...  +        
T Consensus         6 sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~---~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig   82 (259)
T d1j2za_           6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQ---GHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   82 (259)
T ss_dssp             TCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEEC---SEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEe---CCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence            35667788888888888888888888888888888888887   3578888888888888754322100  0        


Q ss_pred             -----------------CccCeEECCCcE------------------ECcCcEE-eceEECCCcEECCccEECCCcEECC
Q 024224          116 -----------------KVLPTTIGDNVT------------------VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVER  159 (270)
Q Consensus       116 -----------------~~~~~~Ig~~v~------------------I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~  159 (270)
                                       ....+.||+++.                  +..++.+ ++++||++||||.+|.|.++++||+
T Consensus        83 ~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~  162 (259)
T d1j2za_          83 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAK  162 (259)
T ss_dssp             SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred             cccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEecc
Confidence                             011233333333                  3333323 2389999999999999999999999


Q ss_pred             CcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHH--HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhcc
Q 024224          160 HGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQ--SATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFAR  237 (270)
Q Consensus       160 ~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (270)
                      +|+||++|+|++|  ||+++++.|+||++..- ...   ++++  ..+++.++.++|+..+.......+..+....+.. 
T Consensus       163 ~a~IgagSvV~kd--Vp~~~i~~G~PA~~~g~-n~~---~lr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-  235 (259)
T d1j2za_         163 GCMIAGKSALGKD--VPPYCTVEGNRAFIRGL-NRH---RMRQLLESKDIDFIYALYKRLFRPIPSLRESAKLELEEHA-  235 (259)
T ss_dssp             TCEECTTCEECSB--BCTTEEEETTBTEEEEE-CHH---HHHHHSCHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHTS-
T ss_pred             ceeeeeeeeeccc--cccceeEEecccccccc-hhh---hhccccchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc-
Confidence            9999999999999  99999999999997653 332   3333  2456888889998888766555555555554433 


Q ss_pred             ChHHHhhhcccccc
Q 024224          238 RDEEYDSMLGVVRE  251 (270)
Q Consensus       238 ~~~~~~~~~~~~~~  251 (270)
                      ..++.++...|+++
T Consensus       236 ~~~~~~~~~~fi~~  249 (259)
T d1j2za_         236 NNPFVKEICSFILE  249 (259)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHc
Confidence            45777777777754

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.95  E-value=8.9e-27  Score=200.81  Aligned_cols=202  Identities=17%  Similarity=0.209  Sum_probs=143.6

Q ss_pred             hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------------------CceEECCCC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------------------NSISVGSGT   98 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------------------~~v~IG~~~   98 (270)
                      .+++++.+.||+++.|+|+++|++++.||++|.|+++++|.++.                           +.+.||+++
T Consensus        11 ~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG~~v   90 (262)
T d2jf2a1          11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRN   90 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEECCee
Confidence            35667788888899999999999999999999999888886321                           358899999


Q ss_pred             EECCCCEEEcCCCCC---------------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcE
Q 024224           99 NIQDNSLVHVAKSNL---------------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGM  162 (270)
Q Consensus        99 ~I~~~~~I~~~~~~~---------------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~v  162 (270)
                      .|+++|+|..+....               ...+|++.||++|.+..++.+.+ ++||++|+||.++.|.++++||++|+
T Consensus        91 ~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~  170 (262)
T d2jf2a1          91 RIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVM  170 (262)
T ss_dssp             EECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             eecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhce
Confidence            999999998754321               11245566666666666665555 99999999999999999999999999


Q ss_pred             ECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHH
Q 024224          163 VAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEY  242 (270)
Q Consensus       163 IgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (270)
                      |+++|+|++|  ||+++++.|+||++.+... ..++......+.+.++.+.|+..+.......+..+++.+... ..++.
T Consensus       171 igagS~Vtkd--vp~~~~~~G~PA~~~~~n~-~gl~R~g~~~e~i~~lk~~~k~L~~~~~~l~~~~~~l~~~~~-~~~~v  246 (262)
T d2jf2a1         171 VGGCSGVAQD--VPPYVIAQGNHATPFGVNI-EGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAE-TYPEV  246 (262)
T ss_dssp             ECSSCEECSB--BCTTEEEEEBTEEEEEECH-HHHHHTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHT-TCGGG
T ss_pred             eeccceEeec--CCcccccCCCCceeeeeec-cchhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcc-CCHHH
Confidence            9999999999  9999999999999875432 112222222344555666666665554444444444433323 33555


Q ss_pred             hhhcccccc
Q 024224          243 DSMLGVVRE  251 (270)
Q Consensus       243 ~~~~~~~~~  251 (270)
                      .+...|+++
T Consensus       247 ~~~i~Fi~~  255 (262)
T d2jf2a1         247 KAFTDFFAR  255 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666656554

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.4e-27  Score=195.38  Aligned_cols=168  Identities=18%  Similarity=0.305  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCc
Q 024224           14 WIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNS   91 (270)
Q Consensus        14 ~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~   91 (270)
                      .|.+...+...++.+++..... +...+...+..++.   .+|++++|+|++.+  +.++.||++|+|+++|+|. +.+.
T Consensus        20 ~l~~~r~~~~~~~~~~N~~~~~-~~~~~~~~~~~l~~---~iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~-~~~~   94 (200)
T d1krra_          20 GLPEKRLRGKTLMYEFNHSHPS-EVEKRESLIKEMFA---TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYT   94 (200)
T ss_dssp             THHHHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHSS---BCCSSCEECSCEEESCSTTEEECSSCEECSCEEEE-CSSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHcC---cCCCCCEEcCCEEEecCCccEECCccEECceEEEe-cCCC
Confidence            3444444444555555432211 11112223344443   59999999999888  5689999999999999998 5578


Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE-EeceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV-LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR  170 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~-i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~  170 (270)
                      ++||++|.|+++|+|.+..+.          .+......+.. -.+++||++||||++|+|++|++||++|+|++||+|+
T Consensus        95 i~IG~~v~Ig~~v~I~~~~~~----------~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~  164 (200)
T d1krra_          95 VTIGDNVLIAPNVTLSVTGHP----------VHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT  164 (200)
T ss_dssp             EEECSSCEECSSCEEESEECC----------SSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEeCCCccccceeEEeccccc----------ceecccccceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEe
Confidence            999999999999999864432          23333333443 3458999999999999999999999999999999999


Q ss_pred             CCCccCCCcEEeecCceeccCCCHHHHH
Q 024224          171 QNTRIPSGEVWGGNPAKFLRKLTDEEIA  198 (270)
Q Consensus       171 ~~~~I~~~~iv~G~pa~~i~~~~~~~~~  198 (270)
                      +|  ||++++++|+|||++|++++.+.+
T Consensus       165 kd--vp~~~iv~G~PArvik~~~~~~~~  190 (200)
T d1krra_         165 KD--IPPNVVAAGVPCRVIREINDRDKH  190 (200)
T ss_dssp             SC--BCTTEEEETTTTEEEEECCGGGTT
T ss_pred             eE--cCCCcEEEEeCCEEEEeCCHHHHh
Confidence            99  999999999999999998776543

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.93  E-value=1.5e-25  Score=187.03  Aligned_cols=158  Identities=30%  Similarity=0.442  Sum_probs=131.7

Q ss_pred             hhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCC---------
Q 024224           44 TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNL---------  113 (270)
Q Consensus        44 ~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~---------  113 (270)
                      ..+......|.|+++++|+|+|.|.+++.||++|+|+++|+|+++. .+++||++|.|+++|+|+......         
T Consensus        14 ~~~~~~~~~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~   93 (210)
T d1qrea_          14 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDN   93 (210)
T ss_dssp             BTTBSSCCCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGG
T ss_pred             CCCCCCCCCCccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCc
Confidence            3455667788999999999999999999999999999999998764 479999999999999997643321         


Q ss_pred             ----CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCee-----cCCCccCCCcEEee
Q 024224          114 ----SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV-----RQNTRIPSGEVWGG  183 (270)
Q Consensus       114 ----~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV-----~~~~~I~~~~iv~G  183 (270)
                          ....+++.||++|+|++++.+++ |+||++|+||++++|.+ ++||++|+|++++++     .+++.||+++++.|
T Consensus        94 ~~~~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v~g  172 (210)
T d1qrea_          94 IVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTS  172 (210)
T ss_dssp             CEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEECTTCEECS
T ss_pred             cccccccccceeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEecCcEeCCCcEECCCcEEeC
Confidence                12247899999999999999975 99999999999999986 589999998766655     46778999999999


Q ss_pred             c-CceeccCCCHHHHHHHHH
Q 024224          184 N-PAKFLRKLTDEEIAFISQ  202 (270)
Q Consensus       184 ~-pa~~i~~~~~~~~~~~~~  202 (270)
                      . |++.++++++++......
T Consensus       173 ~~~~~~i~~~~~~~~~~~~~  192 (210)
T d1qrea_         173 QAEADKLPEVTDDYAYSHTN  192 (210)
T ss_dssp             HHHHHTCCBCCTTSTTTTHH
T ss_pred             CCcccccccCCHHHHHHHHH
Confidence            5 999999888765544333

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6e-25  Score=179.20  Aligned_cols=131  Identities=27%  Similarity=0.466  Sum_probs=109.1

Q ss_pred             hhhccCCCceeCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEE
Q 024224           45 LMNIFDKAPAVDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTI  122 (270)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~I  122 (270)
                      +..+++.   +++ ++|.+...+  +.++.||++|+|+++|+|. +.+.++||++|.|+++|.|...          +.+
T Consensus        49 l~~~~~~---~~~-~~i~~p~~~~~G~ni~IG~~~~I~~~~~I~-d~~~I~IG~~~~Ig~~v~I~~~----------~~~  113 (182)
T d1ocxa_          49 LADLFGQ---VTE-AYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTA----------THP  113 (182)
T ss_dssp             HHHHSSB---CSS-EEECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECE----------ECC
T ss_pred             HHHhcCC---CCC-eEEECCEEEEeccceeECCccEECCCcEEe-cCCeEEECCCeEECcCceEeec----------ccc
Confidence            3444443   454 467776544  5789999999999999997 6678999999999999999864          345


Q ss_pred             CCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224          123 GDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL  192 (270)
Q Consensus       123 g~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~  192 (270)
                      ++.+....++.+. +++||++||||.+|+|++|++||++|+|||||+|++|  ||++++++|+|||++|++
T Consensus       114 ~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd--vp~~~i~~G~PAk~ir~i  182 (182)
T d1ocxa_         114 IDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL  182 (182)
T ss_dssp             SSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEEC
T ss_pred             cceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEEccC--CCCCeEEEeeCCEEEeeC
Confidence            5666666666554 4899999999999999999999999999999999999  999999999999999864

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.90  E-value=3.3e-23  Score=169.71  Aligned_cols=138  Identities=17%  Similarity=0.332  Sum_probs=99.2

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEEC----------------CCCEEEcCCC
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ----------------DNSLVHVAKS  111 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~----------------~~~~I~~~~~  111 (270)
                      ++++.+.|++++.|+|++.|.++++||++|.|+++++|. +   ..||++|.|.                +++.+.....
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~---~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~   85 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-D---STIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSS   85 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-S---CEECTTCEECSCEEESCEECTTCEECSSCEECSSCE
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-e---eecccCccccccceeeccccCcceeecceecccccc
Confidence            578899999999999999999999999999999999986 2   2455554443                2222221100


Q ss_pred             CCCC------------------------CccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECC
Q 024224          112 NLSG------------------------KVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVER  159 (270)
Q Consensus       112 ~~~~------------------------~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~  159 (270)
                      -..+                        ....+.++.++.+++++..        +++.||++||||.++.|.++++||+
T Consensus        86 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~  165 (196)
T d1g97a1          86 LGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGD  165 (196)
T ss_dssp             ECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECT
T ss_pred             cccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECC
Confidence            0000                        0011111222222222211        2478999999999999999999999


Q ss_pred             CcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224          160 HGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK  191 (270)
Q Consensus       160 ~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~  191 (270)
                      +++||++|+|++|  ||++++++|+|||++|+
T Consensus       166 ~s~IgagsvVtkd--vp~~~i~~G~Pak~~k~  195 (196)
T d1g97a1         166 NSLVGAGSTITKD--VPADAIAIGRGRQINKD  195 (196)
T ss_dssp             TCEECTTCEECSC--BCTTCEECCCCCCCCCC
T ss_pred             CCEECCCCEECcC--cCCCCEEEecCCEEecC
Confidence            9999999999999  99999999999999885

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.89  E-value=1.2e-22  Score=166.98  Aligned_cols=117  Identities=21%  Similarity=0.306  Sum_probs=104.9

Q ss_pred             CCEECCCcEEecCeEE--CCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224           58 DAFVAPSASIIGDVQV--GRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH  135 (270)
Q Consensus        58 ~~~I~~~~~i~~~v~I--G~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~  135 (270)
                      .++|+|.+.|..++.|  |.++.|+++++|.+   ++.||++|.|+.+++|.          |++.||++|++++++.+.
T Consensus        74 ~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~----------~~~~Ig~~~~i~~~~~i~  140 (193)
T d3bswa1          74 VNLIHKSALISPSAIVEENAGILIMPYVVINA---KAKIEKGVILNTSSVIE----------HECVIGEFSHVSVGAKCA  140 (193)
T ss_dssp             CCEECTTCEECTTSEECTTSCCEECTTCEECT---TCEECTTCEECTTCEEC----------TTCEECTTCEECTTCEEC
T ss_pred             ceecCCCcEEeeeeEEccccCceEeeeeeecC---Cceeeeccccccccccc----------eeeecccccccccccccc
Confidence            4578888888888777  44789999999874   46899999999999885          589999999999999987


Q ss_pred             c-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          136 G-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       136 ~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      + +.||++||||++|+|.++++||++|+|++||+|.++  +|++++++|+|||.+
T Consensus       141 g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~d--v~~~~~~~G~PAk~i  193 (193)
T d3bswa1         141 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVGVPAKRM  193 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSCCEECCCCCCCC
T ss_pred             ccceeeccccCCceeeEcCCeEECCCCEECCCCEECcC--CCCCcEEEEeCCEEC
Confidence            7 999999999999999999999999999999999999  999999999999864

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.86  E-value=1.2e-22  Score=168.25  Aligned_cols=129  Identities=16%  Similarity=0.208  Sum_probs=92.1

Q ss_pred             eCCCCEECCCcEEec-CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE------
Q 024224           55 VDKDAFVAPSASIIG-DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT------  127 (270)
Q Consensus        55 i~~~~~I~~~~~i~~-~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~------  127 (270)
                      +++++.|++++.|.+ ...+++.+.+++++.|.   +++.||++|.|+++|+|.....        ..+++++.      
T Consensus        26 i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~---~~v~IG~~~~Ig~gv~I~~~~~--------~~i~d~~~~~~~~~   94 (203)
T d1mr7a_          26 KLENVEVGEYSYYDSKNGETFDKQILYHYPILN---DKLKIGKFCSIGPGVTIIMNGA--------NHRMDGSTYPFNLF   94 (203)
T ss_dssp             TSTTEEECTTCEEECSSSCCGGGGEESCCGGGC---CCEEECSSCEECTTCEEECGGG--------CCCCSSCCCCGGGG
T ss_pred             ECCCEEECCCcEEcCCcCcccCceEEeeeCEEC---CccEECCCeEECCCCcEeeecC--------cEeccCceEeeeee
Confidence            344444444444433 23333455555666555   4589999999999999975332        22233332      


Q ss_pred             ---------ECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224          128 ---------VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       128 ---------I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~  196 (270)
                               +...+.+ ++++||++||||++|+|+++++||++|+|||||+|+++  +|++++++|+|||++|++.+++
T Consensus        95 ~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kd--v~~~~i~~G~PAk~ik~r~~~e  171 (203)
T d1mr7a_          95 GNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQD  171 (203)
T ss_dssp             CTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEESSCHH
T ss_pred             cccccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeee--CCCCEEEEEeCCEEEeccCCHH
Confidence                     2222222 45899999999999999999999999999999999998  9999999999999999875443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.7e-21  Score=161.89  Aligned_cols=104  Identities=20%  Similarity=0.307  Sum_probs=79.9

Q ss_pred             CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC----------------cEEeceEECCCcEECCccEECC
Q 024224           90 NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS----------------AVLHGCTVEDEAFVGMGATLLD  153 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~----------------~~i~~~~Ig~~~~Ig~~a~I~~  153 (270)
                      .+++||++|.|+++|+|....+       .+.+.+++.+.+.                ...++++||++||||++|+|.+
T Consensus        53 ~~v~IG~~~~I~~g~~I~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~  125 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAFIMAGN-------QGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMP  125 (208)
T ss_dssp             CCEEECSSCEECTTCEEECSTT-------TTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECT
T ss_pred             CeeEECCCCEECCCCEEeccCC-------CcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccC
Confidence            4688999999999988865332       2222222222221                1224599999999999999999


Q ss_pred             CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC-CHHHHHHHHH
Q 024224          154 GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL-TDEEIAFISQ  202 (270)
Q Consensus       154 gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~-~~~~~~~~~~  202 (270)
                      +++||++|+|||+|+|+++  +|++++++|+|||++|.+ +++.++.+.+
T Consensus       126 gv~IG~~~vIgagSvVtkd--vp~~si~~G~PAk~ik~R~~~~~i~~l~~  173 (208)
T d1xata_         126 GVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIRKRFSDGDIQNLLE  173 (208)
T ss_dssp             TCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHH
T ss_pred             CeEeCCCCEEeCceEEeec--CCcCcEEEecCCEEEeccCCHHHHHHHHH
Confidence            9999999999999999999  999999999999999874 6666555444

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.84  E-value=8.8e-21  Score=162.89  Aligned_cols=139  Identities=24%  Similarity=0.392  Sum_probs=93.4

Q ss_pred             eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcC------------------CCC--CC
Q 024224           55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA------------------KSN--LS  114 (270)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~------------------~~~--~~  114 (270)
                      |+++++|+|+|.|.+++.||++|.|+++|+|.   .+++||++|.|+++|+|...                  ..+  +.
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~---~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~   78 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVG---PHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYA   78 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEEC---TTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEEC---CCCEECCCCEEeCCEEEcCCccccccceeeeecccceeecccccc
Confidence            45566666666666666666666666666665   23566666666666665431                  111  11


Q ss_pred             CCccCeEECCCcEECcCcEE--------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCe
Q 024224          115 GKVLPTTIGDNVTVGHSAVL--------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL  168 (270)
Q Consensus       115 ~~~~~~~Ig~~v~I~~~~~i--------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsv  168 (270)
                      .....+.||+++.|++++++                          ++|.||++|++++++.+.++++||++|+||+++.
T Consensus        79 ~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~  158 (262)
T d2jf2a1          79 GEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTA  158 (262)
T ss_dssp             SCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCce
Confidence            12234556666555555544                          3466677777777777788899999999999999


Q ss_pred             ecCCCccCCCcEEeecCceeccCCCHHHH
Q 024224          169 VRQNTRIPSGEVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       169 V~~~~~I~~~~iv~G~pa~~i~~~~~~~~  197 (270)
                      |.++++|++++++++ -+.+.+++|+...
T Consensus       159 i~~~v~IG~~a~iga-gS~Vtkdvp~~~~  186 (262)
T d2jf2a1         159 VHQFCIIGAHVMVGG-CSGVAQDVPPYVI  186 (262)
T ss_dssp             ECTTCEECTTCEECS-SCEECSBBCTTEE
T ss_pred             eccccEeehhceeec-cceEeecCCcccc
Confidence            999999999998886 5888888887653

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.4e-19  Score=145.70  Aligned_cols=143  Identities=22%  Similarity=0.349  Sum_probs=102.8

Q ss_pred             ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCCCCC
Q 024224           48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKSNLS  114 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~~~~  114 (270)
                      .+...+.||+++.|+|++.|.+++.||++|.|+++|+|....             ....++++|.++.++.+........
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~   89 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLE   89 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECT
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeee
Confidence            455667899999999999999999999999999999997321             1234455555555554432111100


Q ss_pred             C-------CccCeE-----------------ECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcE
Q 024224          115 G-------KVLPTT-----------------IGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGM  162 (270)
Q Consensus       115 ~-------~~~~~~-----------------Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v  162 (270)
                      .       ....+.                 +++++.++.++..        .++.||++||||.++.|.++++||++|+
T Consensus        90 ~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~  169 (201)
T d2oi6a1          90 GAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGAT  169 (201)
T ss_dssp             TCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCE
T ss_pred             eeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCE
Confidence            0       011233                 3344444444322        2479999999999999999999999999


Q ss_pred             ECCCCeecCCCccCCCcEEe-ecCceeccCC
Q 024224          163 VAAGSLVRQNTRIPSGEVWG-GNPAKFLRKL  192 (270)
Q Consensus       163 IgagsvV~~~~~I~~~~iv~-G~pa~~i~~~  192 (270)
                      |+|+|+|.+|  ||+++++. |.|++.++.+
T Consensus       170 IgagsvV~kd--Vp~~si~vg~~~~~~~~~~  198 (201)
T d2oi6a1         170 IAAGTTVTRN--VGENALAISRVPQTQKEGW  198 (201)
T ss_dssp             ECTTCEECSC--BCTTCEECCCCCCCCCTTC
T ss_pred             ECCCCEEeee--cCCCCEEEecccceEccCc
Confidence            9999999999  99999855 4999988775

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=4.4e-19  Score=150.13  Aligned_cols=104  Identities=22%  Similarity=0.341  Sum_probs=72.2

Q ss_pred             CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224           70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (270)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a  149 (270)
                      ++.|+.++.|++++.|. ....++||+++.|+++|.|..          .+++|.......   -..++||++||||+||
T Consensus       137 g~~I~~~~~Ig~g~~i~-h~~givig~~~~ig~~~~i~~----------~v~~~~~~~~~~---~~~~~Ig~~v~IGaga  202 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFD-HATGIVVGETSVIENDVSILQ----------GVTLGGTGKESG---DRHPKVREGVMIGAGA  202 (241)
T ss_dssp             SCEECTTCEECSSCEES-SCTTCEECTTCEECTTCEECT----------TCEEECCSSSCS---SCSCEECTTCEECTTC
T ss_pred             eeccccCCEEccCcccC-ccceEEEeccceecCCeeecc----------cccccccccCCC---CCCCccCCCeEECCCC
Confidence            34444444444444443 223455666666666665542          223322211110   1348899999999999


Q ss_pred             EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224          150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL  189 (270)
Q Consensus       150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i  189 (270)
                      +|.++++||++|+|||||+|++|  ||++++++|+|||++
T Consensus       203 ~Ilg~v~IG~~a~IgAgsvV~kd--Vp~~~vv~G~PAr~I  240 (241)
T d1ssqa_         203 KILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIV  240 (241)
T ss_dssp             EEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEEC
T ss_pred             EEcCCcEECCCCEECCCCEECCC--CCCCCEEEecCcEEe
Confidence            99999999999999999999999  999999999999986

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.75  E-value=5e-18  Score=145.22  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHH
Q 024224          137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEI  197 (270)
Q Consensus       137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~  197 (270)
                      +.||++++++.++.+..+++||++|+||+++.|.++++|++++++++ -+.+.+++|+...
T Consensus       122 ~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~Iga-gSvV~kdVp~~~i  181 (259)
T d1j2za_         122 CVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAG-KSALGKDVPPYCT  181 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECT-TCEECSBBCTTEE
T ss_pred             ecccceeeeeccccccccccccccceecceeeeecccEeccceeeee-eeeecccccccee
Confidence            45555666666666778899999999999999999999999999886 5888889887654

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.70  E-value=1.2e-16  Score=134.34  Aligned_cols=126  Identities=25%  Similarity=0.412  Sum_probs=101.4

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224           57 KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG  136 (270)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~  136 (270)
                      .+.++-|++++..+++|++|+.++| +.+.-   ..+||++|.|..+++|.          +.+.||++|+|+.++.|.+
T Consensus       101 ~g~RvvPga~VR~GayI~~~vVlmp-s~VNi---gA~ig~~~midt~a~vg----------s~aqIG~~vhis~g~~igG  166 (274)
T d3tdta_         101 EGFRVVPPATVRQGAFIARNTVLMP-SYVNI---GAYVDEGTMVDTWATVG----------SCAQIGKNVHLSGGVGIGG  166 (274)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECS-EEECT---TCEECTTCEECTTEEEC----------TTCEECTTCEECTTCEECC
T ss_pred             CCEEeCCCceeccCcEECCCcEEee-eEecc---ccEEcCCcEEcccceec----------ceeEECCCeEECCCcEEEe
Confidence            3567888888888888888887665 56652   35778888888888885          4789999999999998865


Q ss_pred             ---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEEee--cCce-----
Q 024224          137 ---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVWGG--NPAK-----  187 (270)
Q Consensus       137 ---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv~G--~pa~-----  187 (270)
                               ++|+|+|+||++|.|.+|+.||++|+|++|++|++++             .||++++++.  .|.+     
T Consensus       167 vlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv~gs~p~~~~~~~  246 (274)
T d3tdta_         167 VLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSKDGSYS  246 (274)
T ss_dssp             SBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEEEEEEEECTTSSCE
T ss_pred             ccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEeccccceeccCCcEeccccCCCCEEecCceecCCCCcC
Confidence                     6799999999999999999999999999999999942             3899998863  2443     


Q ss_pred             -----eccCCCHHH
Q 024224          188 -----FLRKLTDEE  196 (270)
Q Consensus       188 -----~i~~~~~~~  196 (270)
                           +++++.+..
T Consensus       247 l~cavIvk~~d~~t  260 (274)
T d3tdta_         247 LYCAVIVKKVDAKT  260 (274)
T ss_dssp             EEEEEEEEECCHHH
T ss_pred             CcceEEEEeccCcc
Confidence                 566665544

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.67  E-value=2.6e-16  Score=130.37  Aligned_cols=110  Identities=24%  Similarity=0.393  Sum_probs=97.2

Q ss_pred             CceeCCCCEECCCcEEe----cCeEECCCCEEccCCEEEcCC--------------------CceEECCCCEECCCCEEE
Q 024224           52 APAVDKDAFVAPSASII----GDVQVGRGSSIWYGCVLRGDV--------------------NSISVGSGTNIQDNSLVH  107 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~--------------------~~v~IG~~~~I~~~~~I~  107 (270)
                      .+.||++++|+|++.|.    ..+.||++|.|+++++|....                    ..+.||++|.|++++.|.
T Consensus        40 ~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~  119 (210)
T d1qrea_          40 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH  119 (210)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEE
T ss_pred             ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeeccccccccccccc
Confidence            46799999999999994    379999999999999996321                    248999999999999997


Q ss_pred             cCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224          108 VAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN  172 (270)
Q Consensus       108 ~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~  172 (270)
                      +          +++||++|+||.++++.+++||++|+|++++.+. +++|++++.|.+++++..+
T Consensus       120 g----------~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~-g~~i~~g~~I~~g~~v~g~  173 (210)
T d1qrea_         120 G----------PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAI-GVTIPDGRYIPAGMVVTSQ  173 (210)
T ss_dssp             E----------EEEECTTCEECTTCEEEEEEECTTCEECTTCEEE-SCEECTTBEECTTCEECSH
T ss_pred             c----------CCcccCCcEeeCCccccccccccCcEEecCcEec-CcEeCCCcEECCCcEEeCC
Confidence            5          7999999999999999999999999999999884 6889999999999998875

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.57  E-value=1.6e-14  Score=117.16  Aligned_cols=42  Identities=10%  Similarity=0.187  Sum_probs=34.9

Q ss_pred             CCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224          153 DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE  195 (270)
Q Consensus       153 ~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~  195 (270)
                      .++.||++|++|+++.|.++++|+++++++. -+.+.+++++.
T Consensus       141 ~~~~Ig~~~~iG~~~~I~~gv~IG~~s~Iga-gsvVtkdvp~~  182 (196)
T d1g97a1         141 YKTVIGNNVFVGSNSTIIAPVELGDNSLVGA-GSTITKDVPAD  182 (196)
T ss_dssp             CCEEECTTCEECTTCEEESSCEECTTCEECT-TCEECSCBCTT
T ss_pred             eeeEEecCCEEeeeeEEcCCcEECCCCEECC-CCEECcCcCCC
Confidence            4678999999999999999999999997764 46777777654

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.53  E-value=7e-14  Score=111.71  Aligned_cols=112  Identities=24%  Similarity=0.381  Sum_probs=84.2

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-
Q 024224           58 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-  136 (270)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-  136 (270)
                      ++.|.|..  +..++||++|+|+++++|.+   ++.||++|.|+++|+|....       ..+.||+++.++.++.++. 
T Consensus         2 ~a~i~~~~--~~~~~Ig~~~~I~~~a~I~~---~v~IG~~~~Ig~~~~I~~~~-------~~i~IG~~~~i~~~~~~~~~   69 (172)
T d1xhda_           2 NAMIYPYK--EKKPKIASSAFIADYVTITG---DVYVGEESSIWFNTVIRGDV-------SPTIIGDRVNVQDQCTLHQS   69 (172)
T ss_dssp             CCEEECBT--TBCCEECTTCEECTTCEEEE---EEEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECC
T ss_pred             CcEEEecC--CcCCEECCCcEECCCCEEeC---CEEECCCcEecCCccccccc-------ccccccceeeeeeeceeccC
Confidence            45565532  44578999999999999984   68999999999999997532       3589999999999998864 


Q ss_pred             ----eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224          137 ----CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG  182 (270)
Q Consensus       137 ----~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~  182 (270)
                          ++||+++.++.++.+. +++|+++++|++++.|.++++|+++++++
T Consensus        70 ~~~~~~ig~~~~~~~~~~~~-~~~i~~~~~ig~~~~i~~gv~IG~~~~Ig  118 (172)
T d1xhda_          70 PQYPLILEDDVTVGHQVILH-SCHIKKDALIGMGSIILDGAEIGEGAFIG  118 (172)
T ss_dssp             TTCCEEECTTCEECTTCEEE-SCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CcCCeeeeeeeeeeeeeccc-ccccccceEEecccEeeCCcEEcCccccc
Confidence                7899999988888763 35666666666665555555555555444

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.9e-14  Score=116.03  Aligned_cols=113  Identities=14%  Similarity=0.122  Sum_probs=72.9

Q ss_pred             EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccE
Q 024224           72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGAT  150 (270)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~  150 (270)
                      .||++|+|++++.+. ...++.||++|.|+.+|+|..        .+.++||++|.|+++++|.. ....+......+..
T Consensus        56 ~iG~~~~I~p~~~i~-~G~nv~IG~~~~I~~~~~I~~--------~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~  126 (200)
T d1krra_          56 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVD--------DYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM  126 (200)
T ss_dssp             BCCSSCEECSCEEES-CSTTEEECSSCEECSCEEEEC--------SSCEEECSSCEECSSCEEESEECCSSTTTCTTCCB
T ss_pred             cCCCCCEEcCCEEEe-cCCccEECCccEECceEEEec--------CCCcEeCCCccccceeEEecccccceeccccccee
Confidence            578888888888775 234689999999999999974        23788999999999998855 44445444444444


Q ss_pred             ECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCH
Q 024224          151 LLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD  194 (270)
Q Consensus       151 I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~  194 (270)
                      +..+++||++|+||++++|.++++|+++++++ ..+.+.+++++
T Consensus       127 ~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIg-agSvV~kdvp~  169 (200)
T d1krra_         127 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIG-AGSIVTKDIPP  169 (200)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCT
T ss_pred             ecceEEEccCcccceeeecccccccCCCcEEe-CCCEEeeEcCC
Confidence            44455555555555555555555555555443 23444444443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.50  E-value=1.6e-13  Score=111.81  Aligned_cols=90  Identities=18%  Similarity=0.337  Sum_probs=50.5

Q ss_pred             CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ce
Q 024224           59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GC  137 (270)
Q Consensus        59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~  137 (270)
                      +.|+|++.|++++.||++|.|++++.|..   .+.||++|.+++++.+.+          .+.||++|+||.++++. ++
T Consensus        95 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~---~~~Ig~~~~i~~~~~i~g----------~v~Ig~~~~IG~~s~I~~~v  161 (193)
T d3bswa1          95 ILIMPYVVINAKAKIEKGVILNTSSVIEH---ECVIGEFSHVSVGAKCAG----------NVKIGKNCFLGINSCVLPNL  161 (193)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECT---TCEECTTCEECTTCEECT----------TCEECTTCEECTTCEECTTC
T ss_pred             ceEeeeeeecCCceeeeccccccccccce---eeeccccccccccccccc----------cceeeccccCCceeeEcCCe
Confidence            34444444444444444444444444432   235555555555555542          67777777777777654 37


Q ss_pred             EECCCcEECCccEECCCcEECCCcEE
Q 024224          138 TVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       138 ~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      +||++|.||++|+|..+  |.+++++
T Consensus       162 ~Ig~~~~IgagsvV~~d--v~~~~~~  185 (193)
T d3bswa1         162 SLADDSILGGGATLVKN--QDEKGVF  185 (193)
T ss_dssp             EECTTCEECTTCEECSC--BCSCCEE
T ss_pred             EECCCCEECCCCEECcC--CCCCcEE
Confidence            77777777777777665  3455444

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=8.8e-14  Score=96.65  Aligned_cols=68  Identities=18%  Similarity=0.411  Sum_probs=52.5

Q ss_pred             EEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEE
Q 024224           66 SIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFV  145 (270)
Q Consensus        66 ~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~I  145 (270)
                      .|.+++.||++|.|+++++|.+   +++||++|.|+++|.|.           +++||+++.|++++.|.++.||++|.|
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g---~~~IG~~v~Ig~~~~i~-----------~~~Ig~~~~I~~~s~i~~~~Ig~~~~I   75 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEG---NVTLGHRVKIGTGCVIK-----------NSVIGDDCEISPYTVVEDANLAAACTI   75 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEE---EEEECTTCEECTTCEEE-----------SCEECTTCEECTTCEEESEEECTTCEE
T ss_pred             EEeccEEECCCCEECCccEEeC---CcEECCCCEECCCeEEe-----------cCEECCCCEEcCCcEEECCEECCCCEE
Confidence            4667788888888888888874   46888888888888886           577777777777777777777777777


Q ss_pred             CC
Q 024224          146 GM  147 (270)
Q Consensus       146 g~  147 (270)
                      |+
T Consensus        76 GP   77 (78)
T d1fxja1          76 GP   77 (78)
T ss_dssp             SC
T ss_pred             Cc
Confidence            65

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.8e-13  Score=110.40  Aligned_cols=104  Identities=18%  Similarity=0.233  Sum_probs=86.3

Q ss_pred             hhccCCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEEC
Q 024224           46 MNIFDKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIG  123 (270)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (270)
                      ...++.+..||++++|+++++|.  +.++||++|.|++++.|..+   ..+++.+....++.+..          +++||
T Consensus        66 ~~~~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~---~~~~~~~~~~~~~~~~~----------~v~Ig  132 (182)
T d1ocxa_          66 RCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTA---THPIDPVARNSGAELGK----------PVTIG  132 (182)
T ss_dssp             EESSSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECE---ECCSSHHHHTTTCBEEC----------CEEEC
T ss_pred             EEEeccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeec---ccccceeeeeccceEcc----------eeEEC
Confidence            44467888999999999999995  46899999999999999843   46777777777777753          89999


Q ss_pred             CCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEEC
Q 024224          124 DNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus       124 ~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      ++|+||.+++|.+ ++||++|.||++|+|..+  |.+++++.
T Consensus       133 ~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd--vp~~~i~~  172 (182)
T d1ocxa_         133 NNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVG  172 (182)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEE
T ss_pred             ceEeeCceeeccCcEEECCCCEECCCCEEccC--CCCCeEEE
Confidence            9999999998765 999999999999999875  56777653

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.6e-13  Score=93.46  Aligned_cols=65  Identities=14%  Similarity=0.298  Sum_probs=59.8

Q ss_pred             CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECC
Q 024224           90 NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAA  165 (270)
Q Consensus        90 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIga  165 (270)
                      +++.||++|.|+++++|.+          +++||++|.|+++|.|++++||+++.|++++.|. ++.||++|.||+
T Consensus        13 g~v~IG~~~~I~~~~~i~g----------~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~-~~~Ig~~~~IGP   77 (78)
T d1fxja1          13 GTLTHGRDVEIDTNVIIEG----------NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE-DANLAAACTIGP   77 (78)
T ss_dssp             EEEEECSSCEECTTEEEEE----------EEEECTTCEECTTCEEESCEECTTCEECTTCEEE-SEEECTTCEESC
T ss_pred             ccEEECCCCEECCccEEeC----------CcEECCCCEECCCeEEecCEECCCCEEcCCcEEE-CCEECCCCEECc
Confidence            4589999999999999985          7999999999999999999999999999999995 699999999886

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=4.3e-12  Score=103.13  Aligned_cols=128  Identities=14%  Similarity=0.232  Sum_probs=87.1

Q ss_pred             cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCC------CCccCeEECCCcEECcCcEE----
Q 024224           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLS------GKVLPTTIGDNVTVGHSAVL----  134 (270)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~------~~~~~~~Ig~~v~I~~~~~i----  134 (270)
                      +.|.+.++||+++.|+++|+|.+   ++.||++|.|+++|+|........      .....+.+++++.++.++.+    
T Consensus         9 ~~i~~~v~IG~~v~Ig~~vvI~~---~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~   85 (201)
T d2oi6a1           9 FDLRGTLTHGRDVEIDTNVIIEG---NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGA   85 (201)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEE---EEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTC
T ss_pred             EEECceEEECCCCEECCCCEECC---ceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccce
Confidence            46888899999999999999984   589999999999999975332100      01123333444433333322    


Q ss_pred             --------------eceE-----------------ECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccC
Q 024224          135 --------------HGCT-----------------VEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIP  176 (270)
Q Consensus       135 --------------~~~~-----------------Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~  176 (270)
                                    ..+.                 +++++.+++++...       .++.||+++++|+++.|.++++|+
T Consensus        86 ~~~~~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG  165 (201)
T d2oi6a1          86 ELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVG  165 (201)
T ss_dssp             EECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEEC
T ss_pred             eeeeeeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEEC
Confidence                          2233                 44444444444322       357899999999999999999999


Q ss_pred             CCcEEeecCceeccCCCHHH
Q 024224          177 SGEVWGGNPAKFLRKLTDEE  196 (270)
Q Consensus       177 ~~~iv~G~pa~~i~~~~~~~  196 (270)
                      +++++++ .+.+.+++|+..
T Consensus       166 ~~s~Iga-gsvV~kdVp~~s  184 (201)
T d2oi6a1         166 KGATIAA-GTTVTRNVGENA  184 (201)
T ss_dssp             TTCEECT-TCEECSCBCTTC
T ss_pred             CCCEECC-CCEEeeecCCCC
Confidence            9998875 577778887653

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.33  E-value=8.7e-12  Score=104.48  Aligned_cols=116  Identities=21%  Similarity=0.305  Sum_probs=80.8

Q ss_pred             CCceeCCCCEECCCcEEec-----CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224           51 KAPAVDKDAFVAPSASIIG-----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN  125 (270)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~-----~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (270)
                      +...+-.+++|+|++++.+     +++||++|.|..+++|..+   ..||++|+|+.++.|.+.-.+.  ...+++|+|+
T Consensus       107 Pga~VR~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~---aqIG~~vhis~g~~igGvlep~--~~~p~iIed~  181 (274)
T d3tdta_         107 PPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEPL--QANPTIIEDN  181 (274)
T ss_dssp             TTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTT---CEECTTCEECTTCEECCSBTTB--CSSCCEECTT
T ss_pred             CCceeccCcEECCCcEEeeeEeccccEEcCCcEEcccceecce---eEECCCeEECCCcEEEeccccC--CCCCcEEecC
Confidence            3445556666666665543     5666666666666666633   4777777777777776533221  2368999999


Q ss_pred             cEECcCcEE-eceEECCCcEECCccEECCCc-------------EECCCcEECCCCeecC
Q 024224          126 VTVGHSAVL-HGCTVEDEAFVGMGATLLDGV-------------VVERHGMVAAGSLVRQ  171 (270)
Q Consensus       126 v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv-------------~Ig~~~vIgagsvV~~  171 (270)
                      |+||.++.+ .++.||++++||+|++|.+.+             .|++++++=+|++-.+
T Consensus       182 ~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv~gs~p~~  241 (274)
T d3tdta_         182 CFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSK  241 (274)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEEEEEEEECT
T ss_pred             cEeccCceEecCEEecCceEeccceEEeccccceeccCCcEeccccCCCCEEecCceecC
Confidence            999999955 679999999999999998754             4666666655555444

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=1.8e-12  Score=103.31  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-----eEECCCc
Q 024224           69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-----CTVEDEA  143 (270)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-----~~Ig~~~  143 (270)
                      .+.+||++|+|+++++|.+   ++.||++|.|+++|+|....       +.+.|++++.+...+.++.     +.++.++
T Consensus         9 ~~~~I~~~~~I~~~a~I~g---~v~IG~~~~Ig~~~~I~~~~-------~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~   78 (173)
T d1v3wa_           9 KKPRIHPSAFVDENAVVIG---DVVLEEKTSVWPSAVLRGDI-------EQIYVGKYSNVQDNVSIHTSHGYPTEIGEYV   78 (173)
T ss_dssp             BCCEECTTCEECTTSEEEE---EEEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECBTTBCEEECSSC
T ss_pred             CCCEECcCcEECCCCEEeC---ceEECCCCEECCCccccccc-------cccccccccccccccccccccCCCcccCcce
Confidence            4567888888889999884   58999999999999997532       3678899999888887743     4444444


Q ss_pred             EECC-----ccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224          144 FVGM-----GATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW  181 (270)
Q Consensus       144 ~Ig~-----~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv  181 (270)
                      .+..     .+.|.+++.||.+|+|++++.|..++.|.+++++
T Consensus        79 ~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV  121 (173)
T d1v3wa_          79 TIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVV  121 (173)
T ss_dssp             EECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEE
T ss_pred             eeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEE
Confidence            4333     2333333333333333333333333334444443

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.32  E-value=6.7e-13  Score=108.85  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=16.1

Q ss_pred             CeEECCCcEECcCcEEe-ceEECCCcEECCccEECC
Q 024224          119 PTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLD  153 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~  153 (270)
                      ++.||++|+||.+|+|. +++||++|+||++|+|..
T Consensus       113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~k  148 (203)
T d1mr7a_         113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (203)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CeEECCEEEECCceeEEeEEEEcCCCEEecCeEEee
Confidence            44444444444444332 244444444444444443

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.31  E-value=4.3e-12  Score=97.16  Aligned_cols=61  Identities=16%  Similarity=0.293  Sum_probs=37.5

Q ss_pred             eEECCCcEECcCcEEeceEECCCcEECCccEECCCcEE------CCCcEECCC-CeecCCCccCCCcE
Q 024224          120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVV------ERHGMVAAG-SLVRQNTRIPSGEV  180 (270)
Q Consensus       120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~I------g~~~vIgag-svV~~~~~I~~~~i  180 (270)
                      +.+++++.|+++|.|.+++|+++|.||+++.+..++.+      ++++++..| ++|.+++.||++++
T Consensus        67 ~~i~~~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          67 AKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             TTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             eEcCCCCEECcceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            34556677777777777777777777777777655433      444455444 34555555555553

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.28  E-value=8e-12  Score=95.63  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=62.7

Q ss_pred             eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------CceEECCCCEECCCCEEEcCCCCCCCCcc
Q 024224           54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISVGSGTNIQDNSLVHVAKSNLSGKVL  118 (270)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~  118 (270)
                      .|+++++|. .+.+ .++.||++|.|++++.|....               ..+.+++++.|+++|.|.           
T Consensus        16 ~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~-----------   82 (135)
T d1yp2a1          16 VIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK-----------   82 (135)
T ss_dssp             EECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE-----------
T ss_pred             EECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEec-----------
Confidence            455555554 2222 245666666666666665210               012334556777777775           


Q ss_pred             CeEECCCcEECcCcEEec-eEECCCcEECCccEECCC-cEECCCcEECCCCee
Q 024224          119 PTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVERHGMVAAGSLV  169 (270)
Q Consensus       119 ~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~g-v~Ig~~~vIgagsvV  169 (270)
                      +++|+++|.|++++++.. +.+.+.+.++.++.+.++ ++||++++|++|++|
T Consensus        83 ~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          83 RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII  135 (135)
T ss_dssp             SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred             cceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence            577777887777777643 556666666666666666 567777777777764

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=2.4e-12  Score=105.88  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=76.3

Q ss_pred             ccCCCceeCCCCEECCC----------------cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCC
Q 024224           48 IFDKAPAVDKDAFVAPS----------------ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKS  111 (270)
Q Consensus        48 ~~~~~~~i~~~~~I~~~----------------~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~  111 (270)
                      +.+++..||+.+++...                +.+.+++.||++|.|+++|+|........+.+++.+.+.+.......
T Consensus        16 I~~pNi~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (208)
T d1xata_          16 VSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPA   95 (208)
T ss_dssp             CCCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGG
T ss_pred             cCCCCcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeeccccccccccc
Confidence            44555666666666432                22234689999999999999974433445555555554443332111


Q ss_pred             C-----CCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEE
Q 024224          112 N-----LSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMV  163 (270)
Q Consensus       112 ~-----~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI  163 (270)
                      .     .....++++||++|+||.+|+|.+ ++||++|+||++|+|..+  +.+++++
T Consensus        96 ~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkd--vp~~si~  151 (208)
T d1xata_          96 FAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIV  151 (208)
T ss_dssp             GGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             ccccccCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeec--CCcCcEE
Confidence            0     111346799999999999998765 999999999999999876  3555544

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.18  E-value=1.2e-10  Score=97.66  Aligned_cols=69  Identities=16%  Similarity=0.163  Sum_probs=54.3

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE-EeceEECCCcEECCccEECCCcEECCCcEEC
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV-LHGCTVEDEAFVGMGATLLDGVVVERHGMVA  164 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~-i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg  164 (270)
                      +.||++|.|..++++....+.  ....+.+||++|+||.|++ +.+++||+++.||+||+|..+  |++++++.
T Consensus       164 ~~ig~~~~i~~~v~~~~~~~~--~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kd--Vp~~~vv~  233 (241)
T d1ssqa_         164 SVIENDVSILQGVTLGGTGKE--SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAA  233 (241)
T ss_dssp             CEECTTCEECTTCEEECCSSS--CSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEE
T ss_pred             ceecCCeeecccccccccccC--CCCCCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCC--CCCCCEEE
Confidence            456788888888888764432  1235789999999999995 566999999999999999987  56776663

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.99  E-value=1.3e-09  Score=94.71  Aligned_cols=49  Identities=14%  Similarity=0.272  Sum_probs=23.0

Q ss_pred             CceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCC
Q 024224           52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNS  104 (270)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~  104 (270)
                      .+.|++++.|++++.|.++++||+++.|+ ++.|.   ++..|+++|.|++++
T Consensus        69 ~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~---~~a~I~~n~~i~~~~  117 (320)
T d2f9ca1          69 GTEITGNARITQPCTLYNNVRIGDNVWID-RADIS---DGARISDNVTIQSSS  117 (320)
T ss_dssp             SCEECTTCEECSSCEECSSCEECSSCEES-SCEEC---SSEEECSSCEEESCE
T ss_pred             CCEECCCCEECCCcEECCCcEECCcEEEC-CcEEE---cCcEEeeeeeecCcc
Confidence            34444445555555555555555554443 34443   234555555554433

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.88  E-value=2.2e-09  Score=93.37  Aligned_cols=88  Identities=13%  Similarity=0.113  Sum_probs=50.5

Q ss_pred             eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc-EEec-eEECCCcEECCccEECCCcEECCCcEECCCCee
Q 024224           92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA-VLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV  169 (270)
Q Consensus        92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~-~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV  169 (270)
                      +.++.++.|+.++.|.+...    ..+++.||+++.|..++ .+.+ +.|+++++|+.++.|.+++.|++++.|++.+..
T Consensus       224 ~~i~~~~~Ig~~a~I~g~~~----i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~  299 (320)
T d2f9ca1         224 PTLRYSSQVAEHALIEGNCV----LKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDN  299 (320)
T ss_dssp             CEECSSCEECSSCEEESSEE----ECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEECCSSC
T ss_pred             cccccccccCcceeeeeecc----ccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEEecCC
Confidence            34444444444444443111    12345555555554443 3333 667777777777777777777777777776665


Q ss_pred             cCCCccCCCcEEeecC
Q 024224          170 RQNTRIPSGEVWGGNP  185 (270)
Q Consensus       170 ~~~~~I~~~~iv~G~p  185 (270)
                      +.+  ++...++.|++
T Consensus       300 ~~~--l~g~~~i~G~~  313 (320)
T d2f9ca1         300 TIH--LRGPKVINGED  313 (320)
T ss_dssp             CEE--ECSSEEECSSC
T ss_pred             eEE--ccCCcEEcCcc
Confidence            554  77777777653