Citrus Sinensis ID: 024225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNREAP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccHHHcccccHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEcccccEEEEccccccccccccHHHHHcccEEEEEEccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHcccccEEccccccccccEccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHccccEEEcccccccccccccccEcccccEEEEEEccEEEcccccHHHHHHHHccEEEEcccHHHHHHHccc
Coil and Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsghdgflsFSWIrrntnaqpvfgktrslvqnKTSLKVLCSQQREIPVVEARCMDEVYDALAQRllptsalasnvnvkhivglagppgagkstLAAEVVRRINKiwpqkassfdsqvkppdvatvlpmdgfhLYLSqldamedpkeaharrgapwtfnpLLLLNCLKNLrnqgsvyapsfdhgvgdpveddILVGLQHKVvivdgnylfldggvwkdvssmfdekcyatsfketyfnreap
Flexible Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsgHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVglagppgagKSTLAAEVVRRINKIwpqkassfdsqvkPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYatsfketyfnreap
Low Complexity Region (SEG)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFnpllllnclknlrnQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNREAP
Disordered region (IsUnstruct)
**********************************GFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK***********DVATVLPMDGFHLYLSQLDA*********RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYF*****
Disordered Region (DISOPRED)
*********************************DGFLSFS**************************VLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNREAP
Disordered Region (DISEMBL)
****************************LPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK********KPPDVATVLPMDGFHLYLSQLDAME********RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNREAP
Disordered Region (DISPRO)
********************STPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNREAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9UTC5	235	Putative uridine kinase C	yes	no	0.503	0.578	0.4	3e-27
C5DNG5	347	ATP-dependent kinase YFH7	yes	no	0.607	0.472	0.269	3e-14
P11664	237	Uncharacterized protein Y	N/A	no	0.570	0.649	0.346	1e-12
A7A245	353	ATP-dependent kinase YFH7	N/A	no	0.362	0.277	0.291	1e-10
B5VI33	353	ATP-dependent kinase YFH7	N/A	no	0.362	0.277	0.291	1e-10
B3LUL5	353	ATP-dependent kinase YFH7	N/A	no	0.362	0.277	0.291	1e-10
C7GYB3	353	ATP-dependent kinase YFH7	N/A	no	0.362	0.277	0.291	1e-10
P43591	353	ATP-dependent kinase YFH7	yes	no	0.362	0.277	0.291	1e-10
C8Z7U0	353	ATP-dependent kinase YFH7	N/A	no	0.362	0.277	0.291	1e-10
C5DXG0	375	ATP-dependent kinase YFH7	yes	no	0.466	0.336	0.272	2e-10

>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 14/150 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct: 31  LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             ++P++A A RGA WTF+  L  + ++ ++      +YAPSFDH +GDPV DDI V  +
Sbjct: 79  RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
           ++++I +GNYL L+   W D   ++D K Y
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIKAY 168

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 51/215 (23%)

Query: 75  IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
           IP  E + + +V +        Q   P   +  N   + +VG+ G P +           
Sbjct: 81  IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130

Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-- 187
           R+  + P + S+ D ++     A ++PMDGFHL    LD  +DP EAH RRG+P TF+  
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRGSPPTFDSN 185

Query: 188 ------PLLLLNCL--------KNLRNQG---------------SVYAPSFDHGVGDPVE 218
                  LL   C         K   + G               S+Y P FDH + DP  
Sbjct: 186 NCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPST 245

Query: 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
               V    ++++++G YL LD   W+D+   F +
Sbjct: 246 GQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKD 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 25/179 (13%)

Query: 78  VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++A+  +E  + + + LL   A    VN +   +V L  PPG GKSTL           W
Sbjct: 12  IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63

Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195
              A   D ++  P + T LPMDGFH Y S LDA     +    +GAP TF+   +    
Sbjct: 64  EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFD---VAKLT 112

Query: 196 KNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
           +NLR   +G    P +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct: 113 ENLRQVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCD 169

Escherichia coli (strain K12) (taxid: 83333)

>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain JAY291) (taxid: 574961)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 43/169 (25%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G  G P A   +         N + P + SSF         A ++PMDGFHL    L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197

Query: 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS------------------------ 203
            + ++P+EAH RRG+P TF+        K L    +                        
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257

Query: 204 -VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251
            +  P FDH + DP  D   +    ++VI++G YL  D   W+ V  + 
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEIL 306

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255559925	312	ATP binding protein, putative [Ricinus c	0.981	0.849	0.686	4e-98
225437219	312	PREDICTED: putative uridine kinase C227.	0.940	0.814	0.673	2e-90
449452236	309	PREDICTED: putative uridine kinase C227.	0.851	0.744	0.665	4e-87
449519647	251	PREDICTED: putative uridine kinase C227.	0.844	0.908	0.670	8e-87
356572241	309	PREDICTED: ATP-dependent kinase YFH7-lik	0.911	0.796	0.587	2e-79
224082738	231	predicted protein [Populus trichocarpa]	0.685	0.800	0.762	5e-79
297843102	301	phosphoribulokinase/uridine kinase [Arab	0.937	0.840	0.613	1e-78
42561642	301	P-loop containing nucleoside triphosphat	0.944	0.847	0.595	3e-78
255633506	233	unknown [Glycine max]	0.840	0.974	0.588	6e-71
326508064	322	predicted protein [Hordeum vulgare subsp	0.770	0.645	0.610	2e-69

>gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 211/268 (78%), Gaps = 3/268 (1%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGK-TRSLV 59
           M+VSSLS T RAC  S +TES  LKR   PS H   +S S  +R +  Q +F + T   V
Sbjct: 1   MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             + S+KVLCS +R++PVVEA  M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59  FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEKCYATSFKETYFNR 267
             G WKD+SSMFDEK Y     +T   R
Sbjct: 239 GEGAWKDISSMFDEKWYIDVDIDTAMER 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 206/257 (80%), Gaps = 3/257 (1%)

Query: 1   MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLV 59
           M+V+S ST+ +   SSSS+ E   L++ ++P  +   +  S  RR+   QP+FG TRS  
Sbjct: 1   MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             ++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59  GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KSTLA+EV  R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY  QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P  LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEKCY 256
             G WK+VSSMFDEK +
Sbjct: 239 QEGDWKEVSSMFDEKWF 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 155/233 (66%), Positives = 189/233 (81%), Gaps = 3/233 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 203
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGS
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGS 199

Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
           VYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEK +
Sbjct: 200 VYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKWF 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519647|ref|XP_004166846.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  326 bits (835), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 155/231 (67%), Positives = 188/231 (81%), Gaps = 3/231 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 203
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGS
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGS 199

Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEK
Sbjct: 200 VYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/262 (58%), Positives = 186/262 (70%), Gaps = 16/262 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYLFLDGGVWKDVSSMFDEKCY 256
           NYL L+ GVWK++SS+FDEK +
Sbjct: 231 NYLLLEDGVWKEISSLFDEKWF 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 158/185 (85%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           MDE+YDALA RLLPT+  ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1   MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
           D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61  DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKE 262
           SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEK +     +
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKWFIDVDID 180

Query: 263 TYFNR 267
           T   R
Sbjct: 181 TAMQR 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/269 (61%), Positives = 195/269 (72%), Gaps = 16/269 (5%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S          EL S   GF    W       Q +     S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46

Query: 61  NKTSLKVL--CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
            KT+ + L  CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGA
Sbjct: 47  RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106

Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
           GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166

Query: 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238
           RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ 
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226

Query: 239 LDGGVWKDVSSMFDEKCYATSFKETYFNR 267
           L+ G WKD+S MFDEK +     +T   R
Sbjct: 227 LEEGSWKDISDMFDEKWFIDVNLDTAMQR 255

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 192/267 (71%), Gaps = 12/267 (4%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S        RG        F    W   + +  P+    R   +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVPELSRFRG--------FKVHLW---DQSLVPLHFSIRKR-K 48

Query: 61  NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 49  NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
           ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
           GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query: 241 GGVWKDVSSMFDEKCYATSFKETYFNR 267
            G WKD+S MFDEK +     +T   R
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQR 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633506|gb|ACU17111.1| unknown [Glycine max]

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/243 (58%), Positives = 170/243 (69%), Gaps = 16/243 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYL 237
           NYL
Sbjct: 231 NYL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 156/208 (75%)

Query: 49  QPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKH 108
           QP F +  +    K    V C Q++  P +EA+ M+EVYDALA+ LL       N++ K+
Sbjct: 56  QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           IVGLAGPPGAGKST+A+EVVRR+NK W QK +   S     D+AT+LPMDGFHLY SQLD
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
           AMEDPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V  QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
           +VIV+GNYL L+  VW+++ +MFDEK +
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKWF 263

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2007544	301	AT1G03030 [Arabidopsis thalian	0.944	0.847	0.569	2.8e-73
POMBASE|SPAC227.14	235	SPAC227.14 "uridine kinase (pr	0.503	0.578	0.393	4.6e-25
UNIPROTKB|G4MQ63	236	MGG_02303 "Phosphoribulokinase	0.644	0.737	0.378	1.4e-23
CGD|CAL0002107	226	orf19.7061 [Candida albicans (	0.507	0.606	0.366	1.9e-21
ASPGD|ASPL0000074767	234	AN4382 [Emericella nidulans (t	0.522	0.602	0.350	4.4e-20
ASPGD|ASPL0000094429	583	AN11942 [Emericella nidulans (	0.388	0.180	0.347	4.1e-14
SGD|S000001903	353	YFH7 "Putative kinase with sim	0.5	0.382	0.275	3e-09
UNIPROTKB|P11664	237	yggC "conserved protein with n	0.355	0.405	0.375	4.3e-07

TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 152/267 (56%), Positives = 183/267 (68%)

Query:     1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
             M+VSS ST PR C S S     P    EL S   GF    W   + +  P+    R   +
Sbjct:     1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query:    61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
             N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct:    49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query:   121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
             ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct:   109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query:   181 GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
             GAPWTF              +GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct:   169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query:   241 GGVWKDVSSMFDEKCYATSFKETYFNR 267
              G WKD+S MFDEK +     +T   R
Sbjct:   229 EGSWKDISDMFDEKWFIDVNLDTAMQR 255

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 59/150 (39%), Positives = 85/150 (56%)

Query:   109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
             ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct:    31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query:   169 AMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQ 226
               ++P++A A RGA WTF                   +YAPSFDH +GDPV DDI V  +
Sbjct:    79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query:   227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
             ++++I +GNYL L+   W D   ++D K Y
Sbjct:   139 NRILIFEGNYLLLNKPPWSDACKLYDIKAY 168

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 72/190 (37%), Positives = 100/190 (52%)

Query:    90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
             LA+++     LA     + ++G+AG PGAGK+TLA  VV  +  I   +  + D +    
Sbjct:     9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64

Query:   150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQ 201
                T +PMDG+HL  +QL AM DP+ A  RRGA +TF                      Q
Sbjct:    65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQ 122

Query:   202 GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS 259
             G+V  YAPSFDH V DPV D I +  + ++VI++GNYL LD   WK  +S+ DE  +A  
Sbjct:   123 GTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDEIWFANV 182

Query:   260 FKETYFNREA 269
              +E    R A
Sbjct:   183 DREVARERLA 192

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/153 (36%), Positives = 85/153 (55%)

Query:   102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
             S+   ++++ LAG PG+GK+T A  + +R+        S+F   V       VL  DGFH
Sbjct:    29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73

Query:   162 LYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDD 220
             LY S+L  M DPKEA  RRGAP+TF              +  ++ APSFDH + DP+EDD
Sbjct:    74 LYRSELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDD 133

Query:   221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
             I++     ++I++GNY+ L    W ++ +  D+
Sbjct:   134 IVIHGNVDIIIIEGNYVSLRDKYWDEIENFVDD 166

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 54/154 (35%), Positives = 84/154 (54%)

Query:   105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
             N + ++ ++G PG+GK+ LA  + RRIN    +K  + +  +    +A  +PMDG+HL  
Sbjct:    22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73

Query:   165 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVED 219
             +QL  M DP+ A ARRGA +TF                     +++APSFDH V DPV++
Sbjct:    74 AQLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDN 133

Query:   220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
             DI +    +V+  +GNYL L+   W   + + DE
Sbjct:   134 DIPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDE 167

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)]

 Score = 191 (72.3 bits), Expect = 4.1e-14, P = 4.1e-14
 Identities = 42/121 (34%), Positives = 62/121 (51%)

Query:   152 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 195
             A VL MDGFHL  S+LD + + +  EA+ RRGAPWTF                       
Sbjct:    74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133

Query:   196 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKC 255
                   G +YAP+F H   DP+ + I++     +VI++GNYL LD   W+D++ + D + 
Sbjct:   134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVDYRV 193

Query:   256 Y 256
             +
Sbjct:   194 F 194

GO:0006059 "hexitol metabolic process" evidence=RCA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=RCA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 115 (45.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 41/149 (27%), Positives = 70/149 (46%)

Query:    40 SWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM--DEVYDALAQRLLPT 97
             +++  + N   V  + + +V    SLK L    +   ++E + +  D V D   Q +  +
Sbjct:    54 TFLSEHPNVIEVNDRLKPMVNLVDSLKTL-QPNKVAEMIENQGLFKDHVEDVNFQPVKYS 112

Query:    98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157
             +  ++N     +V   G   A +       V  +NK+      + DS     ++A ++PM
Sbjct:   113 ALTSNNEECTAVVARGGTANAIRIAAVDNPVN-VNKL------AQDSI----NIAQIVPM 161

Query:   158 DGFHLYLSQLDAMEDPKEAHARRGAPWTF 186
             DGFHL    LD  +DP+ AH RRG+P TF
Sbjct:   162 DGFHLSRRCLDLFKDPQTAHKRRGSPSTF 190

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016310 "phosphorylation" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)]

 Score = 135 (52.6 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 39/104 (37%), Positives = 51/104 (49%)

Query:   149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 208
             P + T LPMDGFH Y S LDA     +    +GAP TF              +G    P 
Sbjct:    74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127

Query:   209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
             +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct:   128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCD 169

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023843001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (312 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014548001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa)	•						•		0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	7e-39
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	4e-33
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	3e-12
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	1e-08
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	3e-08
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	5e-06
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	2e-05
TIGR00235	207	TIGR00235, udk, uridine kinase	2e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	9e-05
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	1e-04
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	2e-04
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	3e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-04
cd02025	220	cd02025, PanK, Pantothenate kinase (PanK) catalyze	7e-04
cd02024	187	cd02024, NRK1, Nicotinamide riboside kinase (NRK)	7e-04
PLN02348	395	PLN02348, PLN02348, phosphoribulokinase	0.001
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.002
TIGR00554	290	TIGR00554, panK_bact, pantothenate kinase, bacteri	0.003
pfam03308	267	pfam03308, ArgK, ArgK protein	0.003

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score =  135 bits (341), Expect = 7e-39
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 19/178 (10%)

Query: 78  VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           V+A+  DE  +A+ + LL   +AL +    + IVG+AGPPGAGKSTLA  +   + +   
Sbjct: 3   VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59

Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK 196
                          A  +PMDGFHL  + LDA         R+GAP TF+   L   L+
Sbjct: 60  ----------DGELPAIQVPMDGFHLDNAVLDAHG----LRPRKGAPETFDVAGLAALLR 105

Query: 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
            LR     VY P FD  + DPV D I+V    ++VIV+GNYL LD   W+ ++ +FD 
Sbjct: 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDF 163

Length = 229

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score =  121 bits (306), Expect = 4e-33
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
           L +N      I+G+AG    GKST A  +++ +   WP+           P V  V  MD
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-TMD 121

Query: 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217
           GFH   + LD         AR+G P +++   LL  L +++     V+AP + H + DPV
Sbjct: 122 GFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPV 177

Query: 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
            D   V  Q  ++IV+GN +  DG  W  +S  FD
Sbjct: 178 PDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFD 212

Length = 283

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 24/159 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E+  ++                      V+ +D ++   S L 
Sbjct: 10  IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E           P  F+  LL+  LK+L+    V  P +D+       + I V     
Sbjct: 54  FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
           VVIV+G  L  D    + +  + D K +  +  +    R
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRLIR 144

Length = 218

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 27/155 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  GAGK+T    V R    I       F  +  P         D FH Y     
Sbjct: 1   IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46

Query: 169 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 221
               ED K A        +P   +  LL    K L+  GS   P  +   G  DP   ++
Sbjct: 47  DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106

Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
           + G    ++  +G    L G   + V+ + D K  
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLKIG 135

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 36/154 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E++ ++                      ++  D ++  LS   
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41

Query: 169 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222
             E+ +E       H      + F+  LL++ L++L+N  SV  P +D      +++ + 
Sbjct: 42  -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95

Query: 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
           V     V+I++G     D    K++  + D K +
Sbjct: 96  VY-PADVIILEGILALYD----KELRDLMDLKIF 124

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           +VG+AGP G+GK+T A +     R+N I P    S D    P         DG + + S 
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
           LD                    LL  N L +L N   V  P +D   G       L    
Sbjct: 58  LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98

Query: 227 HKVVIVDGNY 236
             VVI++G Y
Sbjct: 99  SGVVILEGIY 108

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           IVG++GP G+GKSTL+A +VR +     ++ ++               +D    YL+  D
Sbjct: 52  IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96

Query: 169 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDD 220
            +   ++ +     RG P T +P L LN L  +   G  V  P FD     G GD     
Sbjct: 97  RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQT 156

Query: 221 ILVGLQHKVVIVDG 234
             +  +  +VI++G
Sbjct: 157 QWIKFEVDIVILEG 170

Length = 300

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 26/135 (19%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  G+GK+T+A ++  ++ K+                   ++  D ++   S L 
Sbjct: 8   IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50

Query: 169 AMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225
            M + K+    H     P  F+  LL   LKNL+N   +  P +D+      ++ + +  
Sbjct: 51  EMAERKKTNFDH-----PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE- 104

Query: 226 QHKVVIVDGNYLFLD 240
              VVI++G     D
Sbjct: 105 PKDVVILEGIMPLFD 119

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ + GPPG+GKSTLA ++  ++ 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLG 24

Length = 114

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 30/152 (19%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G+AG  G+GK+T+A+ +   +                   +A V+P D ++   S L
Sbjct: 7   IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50

Query: 168 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224
              E+  +    H     P  F+  LL+  LK L+   ++  P +D+      ++ I V 
Sbjct: 51  S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104

Query: 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
               V+I++G  L  D    + +  + D K +
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIKIF 131

Length = 209

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
           R I +VE+R  D    ALA+ LL   AL       H++G+ G PGAGKSTL   + R 
Sbjct: 21  RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74

Length = 323

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 43/156 (27%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 163
           I+G+AG  G GKST     +RR+  ++              D+ TV+ +D +H       
Sbjct: 1   IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44

Query: 164 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 220
             + + A+ DP+  +        F+  L+   LK L+   ++  P ++H  G  DP E  
Sbjct: 45  KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91

Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
            L+     +V+++G +   D    + V  + D   Y
Sbjct: 92  -LIKPTK-IVVIEGLHPLYD----ERVRELLDFSVY 121

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
             ++ + GPPG+GK+TLA  + R +  
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGP 28

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 46/183 (25%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 164
           I+G+AG    GKST  A V++ +   WP   +         ++ T    DGF LY    L
Sbjct: 1   IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 223
            +   M+       R+G P +++   LL  LK++++    V  P + H   D +  +   
Sbjct: 48  IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100

Query: 224 GLQHKVVIVDG-NYL------------FLDGGVWKDVSSMFDEKCY--------ATSFKE 262
             Q  ++I++G N L            F D  ++ D      EK Y         T+F +
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160

Query: 263 TYF 265
              
Sbjct: 161 PDS 163

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220

>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 54/180 (30%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 151
           IVG++G   +GK+TLA    + + +I P   +            + ++       K  DV
Sbjct: 1   IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53

Query: 152 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 210
              L M+     +S LD   E                        K LR+ G+   P  +
Sbjct: 54  LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91

Query: 211 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
                 +   + D+L      ++IVDG  L+      K +  +FD + +     ET   R
Sbjct: 92  FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIRYFLRVPYETCKRR 147

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187

>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 28/157 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLY 163
           ++GLA   G GKST     +RR+  ++     P K  + DS     D  TV+ +D +H  
Sbjct: 51  VIGLAADSGCGKSTF----MRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS- 105

Query: 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDI 221
              LD     KE       P   N  L+   +K L+   +V  P ++H  G+ DP E   
Sbjct: 106 ---LD-RTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--- 158

Query: 222 LVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
              L    K+++++G +   D    + V  + D   Y
Sbjct: 159 ---LIEPPKILVIEGLHPMYD----ERVRDLLDFSIY 188

Length = 395

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 89  ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
           A++ RL P SA    V    I+ L GP GAGKSTL A
Sbjct: 7   AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40

Length = 248

>gnl|CDD|200027 TIGR00554, panK_bact, pantothenate kinase, bacterial type

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
              + +I+ +AG    GKST  A +++ +   WP+             V  ++  DGF  
Sbjct: 58  GAKIPYIISIAGSVAVGKST-TARILQALLSRWPEH----------RKV-ELITTDGFLH 105

Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDI 221
               L      +    ++G P +++   L+  L +L++ + +V AP + H   D + D  
Sbjct: 106 PNQVLKE----RNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGF 161

Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKD------VSSMFDEKCYATS----FKETYFNR 267
            V +Q  ++I++G  +   G  +        VS   D   Y  +     +  Y NR
Sbjct: 162 KVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINR 217

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 290

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
           R I +VE+R         A+ LL    L       H VG+ G PGAGKSTL
Sbjct: 3   RAITLVESR------RPEARELL--RRLMPLTGRAHRVGITGVPGAGKSTL 45

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.98
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.97
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.97
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.96
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.96
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.95
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.95
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.95
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.94
COG1123	539	ATPase components of various ABC-type transport sy	99.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.94
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.94
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.94
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.94
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.94
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.94
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.94
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.94
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.94
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.94
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.93
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.93
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.93
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.93
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.93
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.93
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.93
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.93
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.92
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.92
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.92
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.92
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.92
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.92
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.92
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.92
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.92
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.92
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.92
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.92
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.92
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.92
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.92
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.92
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.92
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.92
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.92
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.92
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.92
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.92
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.92
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.92
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.92
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.91
COG4181	228	Predicted ABC-type transport system involved in ly	99.91
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.91
PRK10908	222	cell division protein FtsE; Provisional	99.91
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.91
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.91
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.91
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.91
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.91
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.91
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.91
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.91
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.91
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.91
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.91
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.91
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.91
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.91
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.91
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.91
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.91
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.91
cd03246	173	ABCC_Protease_Secretion This family represents the	99.91
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.91
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.91
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
COG1123	539	ATPase components of various ABC-type transport sy	99.91
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.91
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.91
COG4172	534	ABC-type uncharacterized transport system, duplica	99.91
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.91
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.91
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.91
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.91
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.91
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.91
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.91
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.91
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.91
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.91
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.91
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.91
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.91
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.91
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.91
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.9
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.9
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.9
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.9
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.9
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.9
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.9
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.9
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.9
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.9
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.9
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.9
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.9
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.9
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.9
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.9
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.9
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.9
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.9
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.9
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.9
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.9
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.9
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.9
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.9
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.9
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.9
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.9
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.9
PRK10938	490	putative molybdenum transport ATP-binding protein	99.9
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.89
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.89
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.89
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.89
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.89
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.89
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.89
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.89
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.89
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.89
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.89
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.89
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.89
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.89
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.89
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.89
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.89
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.89
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.89
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.89
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.89
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.89
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.89
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.89
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.89
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.89
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.89
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.89
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.89
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.89
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.89
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.89
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.89
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.89
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.89
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.89
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.89
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.89
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.89
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.89
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.89
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.88
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.88
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.88
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.88
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.88
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.88
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.88
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.88
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.88
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.88
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.88
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.88
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.88
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.88
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.88
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.88
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.88
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.88
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.88
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.88
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.88
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.88
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.87
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.87
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.87
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.87
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.87
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.87
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.87
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.87
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.87
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.87
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.87
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.87
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.87
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK11147	635	ABC transporter ATPase component; Reviewed	99.87
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.87
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.87
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.87
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.87
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.87
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.87
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.87
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.87
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.87
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.87
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.87
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.86
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.86
PRK10938	490	putative molybdenum transport ATP-binding protein	99.86
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK11147	635	ABC transporter ATPase component; Reviewed	99.86
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.86
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.86
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.86
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.86
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.86
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.86
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.86
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.86
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.85
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.85
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.85
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.85
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.85
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.85
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.85
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.85
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4987	573	CydC ABC-type transport system involved in cytochr	99.85
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.85
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.85
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.84
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.84
COG4559	259	ABC-type hemin transport system, ATPase component	99.84
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.84
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.84
PRK13409	590	putative ATPase RIL; Provisional	99.84
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.84
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.84
PLN03073	718	ABC transporter F family; Provisional	99.84
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.84
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.84
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.84
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.84
PLN03211	659	ABC transporter G-25; Provisional	99.84
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.84
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.84
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.83
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.83
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.83
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.83
COG4172	534	ABC-type uncharacterized transport system, duplica	99.83
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.83
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.83
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.83
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.83
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.83
COG0488	530	Uup ATPase components of ABC transporters with dup	99.82
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.82
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.82
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.82
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.82
COG0488	530	Uup ATPase components of ABC transporters with dup	99.82
PLN03073	718	ABC transporter F family; Provisional	99.82
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.82
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.81
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.81
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.81
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.81
PRK13409	590	putative ATPase RIL; Provisional	99.81
COG4988	559	CydD ABC-type transport system involved in cytochr	99.8
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.8
PTZ00301	210	uridine kinase; Provisional	99.79
PLN03130	1622	ABC transporter C family member; Provisional	99.79
PLN03232	1495	ABC transporter C family member; Provisional	99.79
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.79
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.79
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.79
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.79
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.78
PTZ00243	1560	ABC transporter; Provisional	99.78
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.78
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.77
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.77
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.75
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.75
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.74
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.74
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.74
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.73
PRK05439	311	pantothenate kinase; Provisional	99.73
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.73
PLN03232	1495	ABC transporter C family member; Provisional	99.73
PLN03130	1622	ABC transporter C family member; Provisional	99.72
PLN03140	1470	ABC transporter G family member; Provisional	99.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.71
PLN03140	1470	ABC transporter G family member; Provisional	99.69
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.69
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.69
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.68
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.67
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.67
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.67
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.67
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.67
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.65
PRK05480	209	uridine/cytidine kinase; Provisional	99.65
PLN02318	656	phosphoribulokinase/uridine kinase	99.65
PTZ00243	1560	ABC transporter; Provisional	99.64
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.63
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.62
COG4178	604	ABC-type uncharacterized transport system, permeas	99.62
PLN02348	395	phosphoribulokinase	99.61
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.59
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.59
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.58
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.56
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.55
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.55
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.54
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.53
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.52
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.52
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.51
PRK07429	327	phosphoribulokinase; Provisional	99.5
KOG0062	582	consensus ATPase component of ABC transporters wit	99.5
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.5
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.49
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.48
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.48
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.47
PLN02796	347	D-glycerate 3-kinase	99.43
PRK15453	290	phosphoribulokinase; Provisional	99.43
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.42
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.41
PRK07667	193	uridine kinase; Provisional	99.37
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.37
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.36
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.32
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.32
PRK06696	223	uridine kinase; Validated	99.29
PLN03046	460	D-glycerate 3-kinase; Provisional	99.28
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.26
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.25
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.23
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.22
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.22
KOG0062	582	consensus ATPase component of ABC transporters wit	99.2
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.15
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.1
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.09
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.07
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.06
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.06
PRK06547	172	hypothetical protein; Provisional	99.05
COG4240	300	Predicted kinase [General function prediction only	99.03
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.01
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.99
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.97
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.95
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.92
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.91
PRK08233	182	hypothetical protein; Provisional	98.89
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.86
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.82
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.81
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.75
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.69
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.64
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.63
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.62
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.59
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.52
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.5
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.48
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.48
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.47
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.47
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.46
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.42
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.42
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.42
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.37
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.34
KOG4203	473	consensus Armadillo/beta-Catenin/plakoglobin [Sign	98.32
PRK09825	176	idnK D-gluconate kinase; Provisional	98.32
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.29
KOG2878	282	consensus Predicted kinase [General function predi	98.29
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.28
TIGR00767	415	rho transcription termination factor Rho. Members	98.26
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.25
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.21
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.19
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.16
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.15
cd01128	249	rho_factor Transcription termination factor rho is	98.15
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.14
PRK00300	205	gmk guanylate kinase; Provisional	98.12
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.12
smart00382	148	AAA ATPases associated with a variety of cellular	98.11
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.1
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
PRK08149	428	ATP synthase SpaL; Validated	98.1
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.06
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.05
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.04
PRK08118	167	topology modulation protein; Reviewed	98.04
PRK09862	506	putative ATP-dependent protease; Provisional	98.02
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.01
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.0
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.0
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.99
PRK09099	441	type III secretion system ATPase; Provisional	97.98
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.96
PRK03846	198	adenylylsulfate kinase; Provisional	97.96
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.95
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.94
PRK10416	318	signal recognition particle-docking protein FtsY;	97.93
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.93
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.93
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.92
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.92
PRK05922	434	type III secretion system ATPase; Validated	97.92
PRK00889	175	adenylylsulfate kinase; Provisional	97.91
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.91
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.88
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.88

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=9.5e-33  Score=236.90  Aligned_cols=180  Identities=16%  Similarity=0.184  Sum_probs=146.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC---CCCCc
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV---KPPDV  151 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~---~~p~~  151 (270)
                      ..++++++++.|+...    +|+|+||+|.+||+|+|+||||||||||+|+|+|+.+   |++|++ +++..   ..|+.
T Consensus         2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence            4688999999999843    8899999999999999999999999999999999996   999984 44432   24455


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      +. ++++..-  .+++++.+|........|...........+.++.+++.  ++.|+.++||||+||++++++++.++++
T Consensus        75 ~~-vFQ~~~L--lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l  151 (248)
T COG1116          75 GY-VFQEDAL--LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL  151 (248)
T ss_pred             EE-EeccCcc--cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence            55 6665543  34578888888877777665554556778889988885  5789999999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      |++||||..||+-++..+.+.+-        ..++||||.++++
T Consensus       152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv  195 (248)
T COG1116         152 LLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV  195 (248)
T ss_pred             EEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence            99999999999966666655544        3499999998875

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.1e-32  Score=229.45  Aligned_cols=159  Identities=20%  Similarity=0.253  Sum_probs=130.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      +++++||+|.|+..+    +|++||++|++||+++|+||||||||||+|||+++.                .|+.|. |.
T Consensus         2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE----------------~~~~G~-I~   60 (240)
T COG1126           2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE----------------EPDSGS-IT   60 (240)
T ss_pred             eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc----------------CCCCce-EE
Confidence            689999999999866    789999999999999999999999999999999997                677787 88


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc--------------------------C--CCcCCC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN--------------------------Q--GSVYAP  207 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~--------------------------~--~~~~~~  207 (270)
                      +||..+...     .+....++..|+ +++|++.+-+++++|+.+                          .  .+.|+.
T Consensus        61 i~g~~~~~~-----~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~  135 (240)
T COG1126          61 VDGEDVGDK-----KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA  135 (240)
T ss_pred             ECCEeccch-----hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc
Confidence            888644321     144456667777 677777666777776653                          2  356888


Q ss_pred             CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      ++||||+||++++++++.+|++++.|||++.|||+...++.+.+.       ..+-|||..
T Consensus       136 qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM  196 (240)
T COG1126         136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM  196 (240)
T ss_pred             ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence            999999999999999999999999999999999988888887776       336666654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=229.61  Aligned_cols=180  Identities=15%  Similarity=0.160  Sum_probs=140.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      +++++||+|.|++..    +++|+||+|++||++.++|||||||||++|+|.+++.   |++|++ +++...        
T Consensus         1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L   73 (309)
T COG1125           1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL   73 (309)
T ss_pred             CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence            478999999999755    7899999999999999999999999999999999994   666662 222110        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhhhhh
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                      +-..|.++..-|.+   +++++.+|....-...|...+....+..++++.+++.    .+.|+.++||||+||+..++++
T Consensus        74 Rr~IGYviQqigLF---Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL  150 (309)
T COG1125          74 RRKIGYVIQQIGLF---PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL  150 (309)
T ss_pred             HHhhhhhhhhcccC---CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence            11234444444432   3466666666666666665554556667788888775    3578889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchhh
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYFN  266 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~~  266 (270)
                      +.+|++|++||||..+|+..++.+.+.+.        ..||||||.|+++.
T Consensus       151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k  201 (309)
T COG1125         151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK  201 (309)
T ss_pred             hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence            99999999999999999988888877766        44999999998863

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=9.9e-32  Score=243.52  Aligned_cols=181  Identities=17%  Similarity=0.225  Sum_probs=143.7

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC---CCC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV---KPP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~---~~p-  149 (270)
                      ++.++++||+|.|++..    +++|+||+|++||+++|+|||||||||++|+|+|+..   |++|++ +++..   .+| 
T Consensus         3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            35799999999999644    8899999999999999999999999999999999995   888884 34321   222 


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                        ..|. +++ +|.++ +++++.+|..+..+..+. .......++.++++.+++.  .+.++.++||||+||++++++++
T Consensus        76 kR~ig~-VFQ-~YALF-PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~  152 (352)
T COG3842          76 KRPIGM-VFQ-SYALF-PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV  152 (352)
T ss_pred             hcccce-eec-CcccC-CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence              2333 443 44444 568999998887774443 3333445778888888776  46788899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      .+|++|++|||+..||...+++++..++        ..||||||.++++
T Consensus       153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl  201 (352)
T COG3842         153 PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL  201 (352)
T ss_pred             cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence            9999999999999999977766666555        3499999998876

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.8e-31  Score=238.54  Aligned_cols=183  Identities=18%  Similarity=0.203  Sum_probs=149.7

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      |..++++||+|.|++..    +++++|++|+.||+++|+||||||||||||+|+|+..   |++|++ +++..+   +| 
T Consensus         1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839           1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            45689999999999843    6799999999999999999999999999999999996   889984 444311   22 


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      +++...-+.+|.++ +++++.+|..+..+..+.+.+....++.++.+.+....  +.++.++||||+||+++++++..+|
T Consensus        74 ~R~iamVFQ~yALy-PhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P  152 (338)
T COG3839          74 KRGIAMVFQNYALY-PHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP  152 (338)
T ss_pred             HCCEEEEeCCcccc-CCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence            23322333344444 56899999999998888887777788889988888764  6778899999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      +++++|||+.-||...+..++..+.        ..||||||+.+++
T Consensus       153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAm  198 (338)
T COG3839         153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM  198 (338)
T ss_pred             CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHH
Confidence            9999999999999977766666655        3499999997775

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.8e-30  Score=221.38  Aligned_cols=181  Identities=14%  Similarity=0.120  Sum_probs=145.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|+.......++++|||+|.+||++||+|+||||||||+++|+|+.+   |+.|++ +++....      
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~~   78 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRAK   78 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccch
Confidence            579999999999876555568899999999999999999999999999999999997   999994 6663222      


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhh
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l  223 (270)
                        -...++|++|.+.-.++..++.+...+.....|+...  .....++++.+++..   +.++.+|||||+||+++++++
T Consensus        79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL  156 (252)
T COG1124          79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL  156 (252)
T ss_pred             hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence              2356779999987777666665544444444444322  233778889998875   568889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK  261 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~  261 (270)
                      ..+|++||+|||+..||...+.++.+++.        ..+||+||.
T Consensus       157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl  202 (252)
T COG1124         157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL  202 (252)
T ss_pred             ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence            99999999999999999988888877776        237888876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=3.1e-30  Score=220.64  Aligned_cols=181  Identities=15%  Similarity=0.117  Sum_probs=126.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc-cCCCC-CC--------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK--------  147 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~-~~~~~-~~--------  147 (270)
                      ++++||+|.|......+.+|+++||+|++||+|+|+||||||||||+++|.|+.+   |++|. .+++. ..        
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~~   78 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELA   78 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHHH
Confidence            5689999999765444778999999999999999999999999999999999995   55555 22221 00        


Q ss_pred             ---CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--C-cCCCCCCcccCChhhhhh
Q 024225          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-VYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       148 ---~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~-~~~~~~S~g~~~rv~~~~  221 (270)
                         .-..|. |+++-..++.  +++.+|........+............+++.++++.  . .++.++||||+||+++++
T Consensus        79 ~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR  155 (226)
T COG1136          79 KLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR  155 (226)
T ss_pred             HHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence               111232 4443333222  455555544333333322112233445555555553  2 446699999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +++.+|++|+.|||+.-||....+.+.+++.        ..|.||||.+.+
T Consensus       156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA  206 (226)
T COG1136         156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA  206 (226)
T ss_pred             HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence            9999999999999999999987777777776        238888887554

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=1.5e-29  Score=215.22  Aligned_cols=180  Identities=18%  Similarity=0.218  Sum_probs=120.1

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC-----
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK-----  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~-----  147 (270)
                      .+++++++|++.|++..    +++|++|+|++||+++|+||||||||||+|+|.|+++   |++|++ +++. ..     
T Consensus         6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~   78 (263)
T COG1127           6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE   78 (263)
T ss_pred             cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence            46799999999999854    6799999999999999999999999999999999994   555442 1111 00     


Q ss_pred             -----CCCceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhh
Q 024225          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (270)
Q Consensus       148 -----~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~  218 (270)
                           ....| ++++.|--..  .+++++|..+..+.+. .+...-.+....-++.+++.   .+.++.++||||++|++
T Consensus        79 ~~~~ir~r~G-vlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva  155 (263)
T COG1127          79 ELYEIRKRMG-VLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA  155 (263)
T ss_pred             HHHHHHhhee-EEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence                 00112 1333332111  1444444443222221 12221112222234444443   35688899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++++++.+|++|++|||+.++|+.....+.+++.        ..+-||||.++.
T Consensus       156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~  209 (263)
T COG1127         156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL  209 (263)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH
Confidence            9999999999999999999999965555555544        347788887553

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=9.3e-29  Score=216.77  Aligned_cols=179  Identities=17%  Similarity=0.256  Sum_probs=138.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC------C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ------V---  146 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~------~---  146 (270)
                      .++++++++.|+...    +++||+++|+.||.+||+||||||||||+|+|+|+..   |+.|.+ +++.      .   
T Consensus         2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~   74 (345)
T COG1118           2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV   74 (345)
T ss_pred             ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence            478899999999866    8899999999999999999999999999999999995   888873 3332      1   


Q ss_pred             CCCCceEEeecCCCCccccccCcccChHHHHHhcCC-C-CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       147 ~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~-~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~  222 (270)
                      ..-..|. +.+ .|.++ +++++.+|..+..+.... + .......+.++++.+.++  .+.|+.++||||+||++++++
T Consensus        75 ~~R~VGf-vFQ-~YALF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA  151 (345)
T COG1118          75 RDRKVGF-VFQ-HYALF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA  151 (345)
T ss_pred             hhcceeE-EEe-chhhc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence            1112333 333 34433 447888877776544422 2 233445566777766665  478889999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      ++..|++|++|||+..||...+++++..+.        ..+|||||.++++
T Consensus       152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~  202 (345)
T COG1118         152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL  202 (345)
T ss_pred             hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH
Confidence            999999999999999999988777777666        4599999997765

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.95  E-value=3.7e-28  Score=199.95  Aligned_cols=168  Identities=17%  Similarity=0.121  Sum_probs=139.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC-CC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS-QV--------  146 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~-~~--------  146 (270)
                      +++++||+|.|++.+   .+|+||||+|++||++-|+||||||||||+|+|.+..+   |++|++ +.+ +.        
T Consensus         1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence            478999999998753   37899999999999999999999999999999999996   888884 222 11        


Q ss_pred             --CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       147 --~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                        .+-..|. +++|-.-+.+  .++.+|..+..+..|.+......++.++++.+++..  ...++++|+|++||++++.+
T Consensus        75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA  151 (223)
T COG2884          75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA  151 (223)
T ss_pred             chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence              1223454 7777665554  678888888888888876666677888898888875  45778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~  253 (270)
                      +...|++||.|||+.-+|++...++-.++.+
T Consensus       152 iV~~P~vLlADEPTGNLDp~~s~~im~lfee  182 (223)
T COG2884         152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEE  182 (223)
T ss_pred             HccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999888884

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.5e-28  Score=213.53  Aligned_cols=170  Identities=17%  Similarity=0.191  Sum_probs=128.7

Q ss_pred             eEEeccchhhhhhh-hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV--------  146 (270)
Q Consensus        77 ~l~~~~l~~~y~~~-~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~--------  146 (270)
                      ++++++|+|.|... ...+.+++||||+|++|+|+||+|.||||||||+|+|.++-+   |++|++ .++..        
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence            47899999999873 334778999999999999999999999999999999999984   666663 23210        


Q ss_pred             ---CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          147 ---KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       147 ---~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                         .+...|. |++. |.+. ...++.+|..+..+..|.+......++.++++.+++..  +.|+.++||||||||++++
T Consensus        78 Lr~~R~~IGM-IFQh-FnLL-ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR  154 (339)
T COG1135          78 LRQLRQKIGM-IFQH-FNLL-SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR  154 (339)
T ss_pred             HHHHHhhccE-Eecc-cccc-ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence               0112332 3322 1111 12456666666666666655555566677777777663  5688899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +++.+|++|+.||+++.||+...+.+.+++.
T Consensus       155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~  185 (339)
T COG1135         155 ALANNPKILLCDEATSALDPETTQSILELLK  185 (339)
T ss_pred             HHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence            9999999999999999999998888888877

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=4.3e-28  Score=217.58  Aligned_cols=177  Identities=17%  Similarity=0.194  Sum_probs=141.3

Q ss_pred             cceEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC-CCC----
Q 024225           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS-QVK----  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~-~~~----  147 (270)
                      +..++++||+|.|+ ...    +|+||||++++|+++||+||||||||||+|+|+|+++   |++|++ +.+ +..    
T Consensus         2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA   74 (293)
T ss_pred             CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence            45688999999999 444    8899999999999999999999999999999999997   899994 333 211    


Q ss_pred             --CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       148 --~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                        ....|. +..+....  +.+++.++.++....++.....+...+.++++.+++..  +..+..||+||+||+.++.++
T Consensus        75 ~~~~~igy-~~~~~~~~--~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL  151 (293)
T COG1131          75 KVRRRIGY-VPQEPSLY--PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL  151 (293)
T ss_pred             HHHhheEE-EccCCCCC--ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence              112344 66555533  34899998888888887654445667889999999986  566889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc----c---ceEEeccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E---KCYATSFK  261 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~---~i~v~~~~  261 (270)
                      ..+|+++|+|||+.+||+..+.++.+++.    +   .|+++++.
T Consensus       152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~  196 (293)
T COG1131         152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI  196 (293)
T ss_pred             hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Confidence            99999999999999999966666665555    2   46666665

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6.6e-28  Score=209.24  Aligned_cols=181  Identities=15%  Similarity=0.136  Sum_probs=133.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-C---CCC
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-V---KPP  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~---~~p  149 (270)
                      +++++++|+++.|++..    +|+||||++++|++++|+||||||||||+|.|+|+++   |.+|++ +.+. .   .+.
T Consensus         2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~   74 (254)
T COG1121           2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR   74 (254)
T ss_pred             CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence            46799999999998633    7899999999999999999999999999999999996   899994 2221 1   112


Q ss_pred             CceEEeecCCCCccccccCcccChHHH-HHhcCC---CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~-~~~~g~---~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                      ....++++.-..-+...+++.+-.... ..+.|+   +...|.+.+.+.++.+++.  .+..+.++||||+||+-+|+++
T Consensus        75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL  154 (254)
T COG1121          75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL  154 (254)
T ss_pred             CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence            233346664322222224443322111 012222   2233557788899988886  4677889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +.+|+++++|||+.++|+.....+.+++++       .+-|+||..
T Consensus       155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~  200 (254)
T COG1121         155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG  200 (254)
T ss_pred             ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            999999999999999999888888888872       256667663

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=8.7e-28  Score=211.24  Aligned_cols=174  Identities=16%  Similarity=0.189  Sum_probs=127.7

Q ss_pred             ceEEeccchhhhhhhh--------------------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC
Q 024225           76 PVVEARCMDEVYDALA--------------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW  135 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~--------------------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~  135 (270)
                      ..++++||.|.|+...                    ..+..+.|+||+|+.|||..|+|-||||||||+|+|.+++    
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi----   78 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI----   78 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC----
Confidence            4588889998886432                    1255678999999999999999999999999999999999    


Q ss_pred             CCCcccCCCCCCCCCceEEeecCCCCccc------------------------cccCcccChHHHHHhcCCCCCccHHHH
Q 024225          136 PQKASSFDSQVKPPDVATVLPMDGFHLYL------------------------SQLDAMEDPKEAHARRGAPWTFNPLLL  191 (270)
Q Consensus       136 ~~~G~~~~~~~~~p~~g~~i~~dg~~~~~------------------------~~l~~~~~~~~~~~~~g~~~~~~~~~~  191 (270)
                                  .|+.|. |.++|.++..                        ++.++.+|..+..+..|++.....+..
T Consensus        79 ------------ept~G~-ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a  145 (386)
T COG4175          79 ------------EPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA  145 (386)
T ss_pred             ------------CCCCce-EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHH
Confidence                        566666 6666665543                        223333444443344444333333344


Q ss_pred             HHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225          192 LNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK  261 (270)
Q Consensus       192 ~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~  261 (270)
                      .+.++.+++.  .+.|+.++||||+||+.++++++.+++||++||+|+.|||-.+.++.+.+-        ..+||+||.
T Consensus       146 ~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL  225 (386)
T COG4175         146 LEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL  225 (386)
T ss_pred             HHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence            4444444443  356788999999999999999999999999999999999966665555443        459999999


Q ss_pred             cchhh
Q 024225          262 ETYFN  266 (270)
Q Consensus       262 ~~~~~  266 (270)
                      |+++.
T Consensus       226 dEAlr  230 (386)
T COG4175         226 DEALR  230 (386)
T ss_pred             HHHHh
Confidence            98863

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.94  E-value=1.7e-27  Score=224.81  Aligned_cols=213  Identities=16%  Similarity=0.161  Sum_probs=161.7

Q ss_pred             ccccccccccccccccccchhhccccC------------ccceEEeccchhhhhhh-------hcccccccccceecCCC
Q 024225           47 NAQPVFGKTRSLVQNKTSLKVLCSQQR------------EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVK  107 (270)
Q Consensus        47 ~~q~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~l~~~y~~~-------~~~v~~l~~isl~i~~g  107 (270)
                      .....|..+++.|++.+.-..+.-...            ..++++++||+|.|...       ...+.+++||||++.+|
T Consensus       238 ~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G  317 (539)
T COG1123         238 PTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG  317 (539)
T ss_pred             CHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC
Confidence            456667777788777654443322110            34678999999999842       13477899999999999


Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc-cCCCCCC---------CCCceEEeecCCCCccccccCcccChHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~-~~~~~~~---------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~  177 (270)
                      |++||+|+||||||||+|+|+|++.   |+.|+ ++++...         .-...+++++|.+.-.++.+++.+...+..
T Consensus       318 E~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL  394 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL  394 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence            9999999999999999999999996   88888 4544321         012467789999888777777766555444


Q ss_pred             HhcCC-CCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-
Q 024225          178 ARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-  252 (270)
Q Consensus       178 ~~~g~-~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-  252 (270)
                      ...+. ........+.++++.+++..   +.|+.+|||||+||++++.+++.+|++||+|||+..||...+..+.+++. 
T Consensus       395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~  474 (539)
T COG1123         395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD  474 (539)
T ss_pred             hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            43332 22222345678899998875   57889999999999999999999999999999999999988888888877 


Q ss_pred             -------cceEEecccc
Q 024225          253 -------EKCYATSFKE  262 (270)
Q Consensus       253 -------~~i~v~~~~~  262 (270)
                             ..+||+||.+
T Consensus       475 lq~e~g~t~lfISHDl~  491 (539)
T COG1123         475 LQEELGLTYLFISHDLA  491 (539)
T ss_pred             HHHHhCCEEEEEeCCHH
Confidence                   2378888773

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.94  E-value=1.5e-27  Score=207.92  Aligned_cols=179  Identities=16%  Similarity=0.112  Sum_probs=124.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++||++.|++..    +++|+||++++|++++|+||||||||||+|+|+|+++   |.+|++ .++....       
T Consensus         2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel   74 (258)
T COG1120           2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL   74 (258)
T ss_pred             eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence            588999999999644    6799999999999999999999999999999999995   666663 3332110       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHh-cCCC---CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~  222 (270)
                      ...-.++++.....  ..+++.+.....+.- .+..   ...|.+.+...++.++..  ......++||||+||+.++.+
T Consensus        75 Ak~ia~vpQ~~~~~--~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA  152 (258)
T COG1120          75 AKKLAYVPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA  152 (258)
T ss_pred             hhhEEEeccCCCCC--CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence            11122244433221  224454444332211 1221   222334456667777665  355678999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc----c----ceEEeccccch
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KCYATSFKETY  264 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~----~i~v~~~~~~~  264 (270)
                      ++.++++|++|||+..||...+-++-+++.    +    .|.|.||.+-+
T Consensus       153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A  202 (258)
T COG1120         153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA  202 (258)
T ss_pred             HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            999999999999999999976666666655    2    37777776443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.94  E-value=1e-27  Score=199.10  Aligned_cols=176  Identities=17%  Similarity=0.188  Sum_probs=129.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC-CC------CC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS-QV------KP  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~-~~------~~  148 (270)
                      ++++.+++|.|+..   +.+++||||+++.|+++||+|||||||||++|+|+.++.   |++|++ .++ +.      ++
T Consensus         1 Ml~v~~l~K~y~~~---v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           1 MLEVTDLTKSYGSK---VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             CeeeeehhhhccCH---HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence            47889999999873   448899999999999999999999999999999999995   666663 222 11      11


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      ...|. +. +...++ ..+++.++..+..+.+|+.......+..++.+.+.+..  +.+...||.|++|++++++++..+
T Consensus        75 r~IGV-l~-~e~glY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~  151 (245)
T COG4555          75 RKIGV-LF-GERGLY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD  151 (245)
T ss_pred             hhcce-ec-CCcChh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence            12232 22 222221 23666677766666666644333445556666666653  566789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      |+++|+|||+.++|--.++.+.+++.       ..||-+|..
T Consensus       152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m  193 (245)
T COG4555         152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM  193 (245)
T ss_pred             CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH
Confidence            99999999999999877777777776       236666654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=2e-27  Score=218.40  Aligned_cols=181  Identities=16%  Similarity=0.174  Sum_probs=137.6

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      +.+++++||++.|++..    +|+++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .| 
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            45799999999998633    6799999999999999999999999999999999985   888884 444211   11 


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....+++++. .++ +++++.++..+..+..+.........+.++++.+++..  +.++..+|+||+||+++++++..+
T Consensus        75 ~r~ig~v~Q~~-~lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~  152 (353)
T TIGR03265        75 KRDYGIVFQSY-ALF-PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS  152 (353)
T ss_pred             HCCEEEEeCCc-ccC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence             1123355443 222 34777777766554444332223345677888877754  567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++++++|||+..+|...++.+.+.+.        ..|||+|+.++.
T Consensus       153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea  198 (353)
T TIGR03265       153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA  198 (353)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence            99999999999999987777777665        249999998764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.5e-27  Score=217.92  Aligned_cols=180  Identities=16%  Similarity=0.135  Sum_probs=134.3

Q ss_pred             ceEEeccchhhh-hhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        76 ~~l~~~~l~~~y-~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      .+++++||++.| ++..    +|+++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .| 
T Consensus         2 ~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~   74 (356)
T PRK11650          2 AGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA   74 (356)
T ss_pred             CEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            468999999999 5432    7799999999999999999999999999999999986   889984 444211   11 


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....+++++.. ++ +++++.++..+..+..+.........+.++++.+++..  +.++..+|+||+||+++++++..+
T Consensus        75 ~r~ig~v~Q~~~-lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~  152 (356)
T PRK11650         75 DRDIAMVFQNYA-LY-PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE  152 (356)
T ss_pred             HCCEEEEeCCcc-cc-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence             12333565543 22 34677777766544444332222345567777777653  567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      |+++++|||+..||...++.+.+.+.        ..|||+||.++.
T Consensus       153 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea  198 (356)
T PRK11650        153 PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA  198 (356)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            99999999999999977776666554        248999998654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.1e-27  Score=199.86  Aligned_cols=168  Identities=18%  Similarity=0.191  Sum_probs=113.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------  147 (270)
                      .+++++||++.|++.+   .+|++|||+|++||+|+|+||||||||||+|+|+|+..   ++.|++ +++...       
T Consensus         2 ~~i~~~nl~k~yp~~~---~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k~   75 (258)
T COG3638           2 MMIEVKNLSKTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKE   75 (258)
T ss_pred             ceEEEeeeeeecCCCc---eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchHH
Confidence            4699999999995432   27899999999999999999999999999999999873   555542 111000       


Q ss_pred             ----CCCceEEeecCCCCccccccCcccChH--------HHHHhcCCCCCccHHHHHHHHHhhccCCC--cCCCCCCccc
Q 024225          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPK--------EAHARRGAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGV  213 (270)
Q Consensus       148 ----~p~~g~~i~~dg~~~~~~~l~~~~~~~--------~~~~~~g~~~~~~~~~~~~~l~~l~~~~~--~~~~~~S~g~  213 (270)
                          +.+.|. |+++..-+.+  +++.+|..        ..+..+|++...+....+..++.++..+.  .+...+||||
T Consensus        76 lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ  152 (258)
T COG3638          76 LRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ  152 (258)
T ss_pred             HHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence                112232 3333222222  22222221        11222333323333344455555555433  2355899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +||+++++++..++++|+-|||+..||+...+.+-+.+.
T Consensus       153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~  191 (258)
T COG3638         153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK  191 (258)
T ss_pred             hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHH
Confidence            999999999999999999999999999988888887776

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.7e-27  Score=217.29  Aligned_cols=182  Identities=16%  Similarity=0.152  Sum_probs=136.4

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP  149 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p  149 (270)
                      .+++++++||++.|++..    +++|+||++++||+++|+||||||||||+++|+|++.   |++|++ +++...   .+
T Consensus         3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   75 (351)
T PRK11432          3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI   75 (351)
T ss_pred             CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            356899999999997633    6799999999999999999999999999999999996   888884 444211   11


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....+++++. .+ .+++++.++..+..+..+.........+.++++.+++.  .+.++..+|+||+||+++++++..
T Consensus        76 ~~r~ig~vfQ~~-~l-fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~  153 (351)
T PRK11432         76 QQRDICMVFQSY-AL-FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL  153 (351)
T ss_pred             HHCCEEEEeCCc-cc-CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence              1222355443 22 23367777666554434433222234556777777665  356778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +|+++++|||+..||...++++.+.+.        ..|||+||.+++
T Consensus       154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~  200 (351)
T PRK11432        154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA  200 (351)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence            999999999999999988877777664        348999998764

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.1e-27  Score=194.70  Aligned_cols=183  Identities=14%  Similarity=0.188  Sum_probs=148.8

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CCC--CC
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VKP--PD  150 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~~--p~  150 (270)
                      |..+.+++++..|++..  ..+++|+|++|.+||.|.++||||||||||+++++|++.   |..|++ .++. ..-  .+
T Consensus         1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae   75 (259)
T COG4525           1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE   75 (259)
T ss_pred             CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence            35678889999998844  557899999999999999999999999999999999995   888884 3332 112  24


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      .|. ++++.--+  +++++.+|.++..+..|+......+...+++..+++++  ..++-++||||+||+.++.+++.+|+
T Consensus        76 rgv-VFQ~~~Ll--PWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~  152 (259)
T COG4525          76 RGV-VFQNEALL--PWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ  152 (259)
T ss_pred             cee-EeccCccc--hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence            565 66665543  34788899999999999977666667778888888763  56777999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      .+++|||+..+|.-.++++.+++-        ...+|||+.++++
T Consensus       153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl  197 (259)
T COG4525         153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL  197 (259)
T ss_pred             eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence            999999999999877777777654        3378999998775

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=7.9e-27  Score=202.76  Aligned_cols=154  Identities=16%  Similarity=0.213  Sum_probs=128.7

Q ss_pred             cceEEeccchhhhhhhhc-----ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC
Q 024225           75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~-----~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p  149 (270)
                      +++++++||+|.|.....     .+.|++||||+|++||++||+|+|||||||+.|+|.|++                .|
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~----------------~p   65 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE----------------EP   65 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc----------------CC
Confidence            457999999999975321     267899999999999999999999999999999999998                78


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      +.|. |.++|.++..  +.               .....+.+.++++.+++..   ..++.+|||||+||+.++++++.+
T Consensus        66 t~G~-i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~  127 (268)
T COG4608          66 TSGE-ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN  127 (268)
T ss_pred             CCce-EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence            8898 8888876432  11               1112355778888888764   568889999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      |+++|.|||+..+|-..+.++..++.        ..+|++||..
T Consensus       128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~  171 (268)
T COG4608         128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS  171 (268)
T ss_pred             CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence            99999999999999988888888887        3388998874

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.94  E-value=6.7e-27  Score=211.20  Aligned_cols=178  Identities=16%  Similarity=0.124  Sum_probs=129.6

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------  147 (270)
                      .++++++||+|.|++..    +|+|+||+|++|+++||+||||||||||+++|+|++.   |++|++ +++...      
T Consensus         5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~   77 (306)
T PRK13537          5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH   77 (306)
T ss_pred             CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence            35799999999998633    7899999999999999999999999999999999996   888884 333211      


Q ss_pred             -CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       148 -~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                       ....|. ++++....  ..+++.++..+....++...........++++.+.+..  +..+..||+||+||+.++.++.
T Consensus        78 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~  154 (306)
T PRK13537         78 ARQRVGV-VPQFDNLD--PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV  154 (306)
T ss_pred             HHhcEEE-EeccCcCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence             112333 55554322  23566666655444444432222234456777766653  5566799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      .+|++||+|||+.+||+..++.+.+++..       .|+++|+.+
T Consensus       155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~  199 (306)
T PRK13537        155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME  199 (306)
T ss_pred             CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            99999999999999999777777666652       255566654

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.94  E-value=7.1e-27  Score=216.04  Aligned_cols=182  Identities=19%  Similarity=0.201  Sum_probs=135.6

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP  149 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p  149 (270)
                      +.++++++|+++.|++..    +++++||++++||+++|+||||||||||+++|+|++.   |++|++ +++...   +|
T Consensus        11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   83 (375)
T PRK09452         11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA   83 (375)
T ss_pred             CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            456799999999998633    6799999999999999999999999999999999995   888884 444311   11


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....+++++.. + .+++++.++..+.....+.+.......+.++++.+++..  +.++..+|+||+||+++++++..
T Consensus        84 ~~r~ig~vfQ~~~-l-fp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~  161 (375)
T PRK09452         84 ENRHVNTVFQSYA-L-FPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN  161 (375)
T ss_pred             HHCCEEEEecCcc-c-CCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence              11233555532 2 234677776665443334322212234566777777653  56777999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +|+++++|||+..||...++.+.+.+.        ..|||+||.+++
T Consensus       162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea  208 (375)
T PRK09452        162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA  208 (375)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            999999999999999987777777665        239999998764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.1e-26  Score=194.54  Aligned_cols=167  Identities=19%  Similarity=0.230  Sum_probs=123.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      .+.++++||++.|+..+    +|+|||++|++++++||+||||||||||+|++.++.. +-|  |        .-..|. 
T Consensus         5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~--~--------~r~~G~-   68 (253)
T COG1117           5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIP--G--------ARVEGE-   68 (253)
T ss_pred             cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCc--C--------ceEEEE-
Confidence            45789999999999866    8899999999999999999999999999999999863 111  1        112466 


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------------------------CC
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------------------------GS  203 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------------------------~~  203 (270)
                      |.++|.+++....+    +...+++.|+.++.....-+++.+|+..|                               .+
T Consensus        69 v~~~g~ni~~~~~d----~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~  144 (253)
T COG1117          69 VLLDGKNIYDPKVD----VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH  144 (253)
T ss_pred             EEECCeeccCCCCC----HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh
Confidence            77777777654332    33456666662222111114444444432                               12


Q ss_pred             cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc------eEEeccc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK------CYATSFK  261 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~------i~v~~~~  261 (270)
                      ...-.+||||+||+-++++++.+|+||++|||++.||+....++.+++.+.      |.|||+.
T Consensus       145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm  208 (253)
T COG1117         145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM  208 (253)
T ss_pred             CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence            234478999999999999999999999999999999999998888888732      6677765

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.93  E-value=1.3e-26  Score=212.04  Aligned_cols=178  Identities=16%  Similarity=0.116  Sum_probs=128.7

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------  147 (270)
                      +++++++||+|.|++..    +|+|+||+|++|+++||+||||||||||+++|+|++.   |++|++ +++...      
T Consensus        39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~  111 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL  111 (340)
T ss_pred             ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence            45799999999998643    7899999999999999999999999999999999996   888883 333211      


Q ss_pred             -CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       148 -~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                       ....|. ++++....  ..+++.++..+....++...........++++.+++.  .+..+..||+||+||+.++.++.
T Consensus       112 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~  188 (340)
T PRK13536        112 ARARIGV-VPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI  188 (340)
T ss_pred             HhccEEE-EeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence             112233 55443322  2255555554433333432211223345667766665  35667799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      .+|+++|+|||+.+||+..++.+.+++..       .|+++|+.+
T Consensus       189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~  233 (340)
T PRK13536        189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME  233 (340)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            99999999999999999877777777753       266666654

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.4e-26  Score=212.81  Aligned_cols=182  Identities=16%  Similarity=0.154  Sum_probs=135.3

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP  149 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p  149 (270)
                      +.++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   +|
T Consensus        16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            445799999999997632    6799999999999999999999999999999999986   889984 444211   11


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....+++++.. + .+++++.+|..+..+..+.........+.++++.+++..  +.++..+|+||+||+++++++..
T Consensus        89 ~~r~ig~vfQ~~~-l-fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~  166 (377)
T PRK11607         89 YQRPINMMFQSYA-L-FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK  166 (377)
T ss_pred             HHCCEEEEeCCCc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence              12233555543 2 234677777766544444332222344567777777653  56777999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHH----hhc----cceEEeccccch
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSS----MFD----EKCYATSFKETY  264 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~----~~~----~~i~v~~~~~~~  264 (270)
                      +|++|++|||+..||...++.+.+    +.+    ..||++||.+++
T Consensus       167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea  213 (377)
T PRK11607        167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA  213 (377)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence            999999999999999987766654    333    248999998764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.3e-26  Score=212.64  Aligned_cols=180  Identities=16%  Similarity=0.126  Sum_probs=131.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      +.++++||++.|++..    +|+++||++++|++++|+||||||||||+++|+|+++   |++|++ +++...   .+  
T Consensus         2 ~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~   74 (369)
T PRK11000          2 ASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE   74 (369)
T ss_pred             CEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence            4689999999997632    6799999999999999999999999999999999986   888984 443211   11  


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....++.++... + +.+++.++..+.....+.........+.++++.+++..  +.++..+|+||+||++++.++..++
T Consensus        75 ~~i~~v~Q~~~l-~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P  152 (369)
T PRK11000         75 RGVGMVFQSYAL-Y-PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP  152 (369)
T ss_pred             CCEEEEeCCccc-C-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            122335555332 2 23566666554433333322222234567777777753  4567799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++|++|||+..||...++.+.+.+.        ..|+++|+.+..
T Consensus       153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~  197 (369)
T PRK11000        153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA  197 (369)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence            9999999999999987777665554        238999988643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.93  E-value=2.7e-26  Score=209.84  Aligned_cols=182  Identities=16%  Similarity=0.122  Sum_probs=130.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C--C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P--P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~--p---  149 (270)
                      +++++||+|.|+.......+|+|+||++++||++||+||||||||||+|+|+|+++   |++|++ +++... .  +   
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l   77 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL   77 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence            37899999999632112347899999999999999999999999999999999996   888884 443211 0  1   


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                          ....+++++...+.  ..++.++..+.....+...........++++.+++..  +.++..+|+||+||+++++++
T Consensus        78 ~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL  155 (343)
T TIGR02314        78 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL  155 (343)
T ss_pred             HHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence                12233555533221  2455565554443334332223345567788777753  567779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ..+|++|++|||+..||+...+.+.+++..        .|+++|+.+.
T Consensus       156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~  203 (343)
T TIGR02314       156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV  203 (343)
T ss_pred             HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999877777666552        3777777654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.6e-26  Score=197.07  Aligned_cols=181  Identities=14%  Similarity=0.092  Sum_probs=141.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV--------  146 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~--------  146 (270)
                      ++++++++++.|++.   ..+++++||++++|+.++|+|+||||||||+++|+|++.   |++|.+ +++..        
T Consensus         2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~   75 (235)
T COG1122           2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL   75 (235)
T ss_pred             ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence            468899999999874   337899999999999999999999999999999999996   888885 33321        


Q ss_pred             -CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       147 -~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                       .....|. +.++..+... .-++.++..+.....|++......++.+.++.+++..  +..+..+|+||+||+++|.++
T Consensus        76 ~~~~~vG~-VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL  153 (235)
T COG1122          76 ELRQKVGL-VFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL  153 (235)
T ss_pred             HhhcceEE-EEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence             1233454 6666643222 1355666777777888765545566778888777763  566779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY  264 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~  264 (270)
                      +.+|++||+|||+..||+..++++.+++..        .|.++||.+..
T Consensus       154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~  202 (235)
T COG1122         154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV  202 (235)
T ss_pred             HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence            999999999999999999888888777752        47778877543

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.93  E-value=3e-26  Score=211.08  Aligned_cols=179  Identities=13%  Similarity=0.168  Sum_probs=134.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC--ccc-CCCCCC---CC-
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASS-FDSQVK---PP-  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~--G~~-~~~~~~---~p-  149 (270)
                      .++++||++.|++..    +|+++||++++|++++|+||||||||||+++|+|++.   |++  |++ +++...   .+ 
T Consensus         5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~   77 (362)
T TIGR03258         5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH   77 (362)
T ss_pred             EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence            478999999998632    7899999999999999999999999999999999986   888  884 443211   11 


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....++.++.. ++ +.+++.++..+.....+.+.......+.++++.+++..  +.++..+|+||+||++++.++..+
T Consensus        78 ~r~ig~vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~  155 (362)
T TIGR03258        78 KRGLALLFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE  155 (362)
T ss_pred             HCCEEEEECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence             11223555433 22 34677777766554444433223345667788777753  567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEeccccch
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKETY  264 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~~~  264 (270)
                      ++++++|||+..||...++++.+.++         ..||+|||.++.
T Consensus       156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea  202 (362)
T TIGR03258       156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA  202 (362)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            99999999999999987777766554         248999998764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.9e-26  Score=206.25  Aligned_cols=189  Identities=14%  Similarity=0.122  Sum_probs=129.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCccc-CCCCCC-C---
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS-FDSQVK-P---  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~-~~~~~G~~-~~~~~~-~---  148 (270)
                      |.+++++||++.|+.......+|+||||+|++||++||+|+||||||||+++|+|++.. .++++|++ +++... .   
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            34689999999997633224578999999999999999999999999999999999841 11356763 333211 0   


Q ss_pred             -------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcccCC
Q 024225          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGD  215 (270)
Q Consensus       149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~~  215 (270)
                             .....+++++.....++.++..+...+..... +...........++++.+++..     +.++.+||+||+|
T Consensus        81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q  160 (326)
T PRK11022         81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ  160 (326)
T ss_pred             HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence                   11233466665422222233322222211111 2221222344567788887752     4577899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |+.++.+++.++++||+|||+..||...+.++.+++.        ..|+|+||.+.
T Consensus       161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~  216 (326)
T PRK11022        161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL  216 (326)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            9999999999999999999999999987777777665        24888988754

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=1.2e-26  Score=192.52  Aligned_cols=150  Identities=23%  Similarity=0.275  Sum_probs=114.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      |..+.++||.|.|+...    +++++||++++||+|||+|||||||||.+.++.|++                .|+.|. 
T Consensus         2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv----------------~~d~G~-   60 (243)
T COG1137           2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV----------------RPDSGK-   60 (243)
T ss_pred             CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE----------------ecCCce-
Confidence            45789999999998855    679999999999999999999999999999999999                677777 


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCC---CCCccHH---------------------------HHHHHHHhhccC--C
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPL---------------------------LLLNCLKNLRNQ--G  202 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~---~~~~~~~---------------------------~~~~~l~~l~~~--~  202 (270)
                      |.+|+.++..       .+-+.+++.|+   |+.....                           .+.++++.+...  .
T Consensus        61 i~ld~~diT~-------lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr  133 (243)
T COG1137          61 ILLDDEDITK-------LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR  133 (243)
T ss_pred             EEECCccccc-------CChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh
Confidence            7777776543       11223333332   2222111                           122344444433  3


Q ss_pred             CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       203 ~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +.....+|||+++|++++++++.+|+.+++||||.+.||....+++.++.
T Consensus       134 ~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~  183 (243)
T COG1137         134 DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK  183 (243)
T ss_pred             cCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHH
Confidence            44566899999999999999999999999999999999977777777666

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.93  E-value=6e-26  Score=194.89  Aligned_cols=178  Identities=17%  Similarity=0.124  Sum_probs=124.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p----  149 (270)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+    
T Consensus         2 l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   76 (216)
T TIGR00960         2 IRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREIP   76 (216)
T ss_pred             eEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHHH
Confidence            78899999996421  126799999999999999999999999999999999985   778873 333211   00    


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                         ....++.++.....  .+++.++........+.........+.++++.+++..  +..+..+|+||+||++++.++.
T Consensus        77 ~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~  154 (216)
T TIGR00960        77 FLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIV  154 (216)
T ss_pred             HHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence               11223454432211  1344444433222223221112234566777776643  4456799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      .+++++|+|||+..+|...++.+.+++..       .|+++|+.+
T Consensus       155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~  199 (216)
T TIGR00960       155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN  199 (216)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            99999999999999999888777777652       377888765

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.92  E-value=6.3e-26  Score=194.92  Aligned_cols=181  Identities=17%  Similarity=0.162  Sum_probs=122.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C-----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P-----  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~-----  148 (270)
                      ++++||++.|++......+++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .     
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   77 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA   77 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence            4678999999752101226799999999999999999999999999999999985   788874 343211   0     


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         .....++.++....  ..++..++........+.........+.++++.+++..  +..+..+|+||+||++++.++
T Consensus        78 ~~~~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  155 (218)
T cd03255          78 AFRRRHIGFVFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL  155 (218)
T ss_pred             HHHhhcEEEEeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence               01122244443211  12344443333222222211111234556777776653  455679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ..+++++|+|||+..+|+..++.+.+++.        ..|+++|+.+.
T Consensus       156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  203 (218)
T cd03255         156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL  203 (218)
T ss_pred             ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence            99999999999999999987777766665        23677777653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.92  E-value=7.4e-26  Score=200.65  Aligned_cols=186  Identities=16%  Similarity=0.146  Sum_probs=138.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcc-cCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQ--------  145 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~-~~~~~--------  145 (270)
                      +++++||+..|......+.+++||||++++||++||+|+|||||||+++.|+|++..  ..-..|+ .+++.        
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            368999999998755557799999999999999999999999999999999999941  1112355 34443        


Q ss_pred             ---CCCCCceEEeecCCCCccccccCcccChHHHHHhc-CC-CCCccHHHHHHHHHhhccCC-----CcCCCCCCcccCC
Q 024225          146 ---VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGD  215 (270)
Q Consensus       146 ---~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~-~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~~  215 (270)
                         ..++....+|++|.....++-++.-+...+....+ +. ..........++++.+++..     +.|+.+|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence               12344555677777655554444333222222222 11 12223445677888888764     4688899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      |+.++.+++.+|++||.|||+..||-..+.++.++++.        .||||||..
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~  215 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG  215 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999999999888882        389999984

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.92  E-value=7.8e-26  Score=194.78  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=124.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~  150 (270)
                      ++++|+++.|++..    +++|+||++++||++||+||||||||||+++|+|+++   |++|++ +++....      ..
T Consensus         1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (220)
T cd03265           1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR   73 (220)
T ss_pred             CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence            46789999997632    6799999999999999999999999999999999985   888884 3332111      01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++.++....  +.+++.++........+.........+.++++.+++..  +.++..+|+||+||+.++.++..+++
T Consensus        74 ~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~  151 (220)
T cd03265          74 RIGIVFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE  151 (220)
T ss_pred             cEEEecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            122344443221  22444444433323333322212334566777777653  45667999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++|+|||+..+|+...+.+.+++.        ..|+++|+.+.
T Consensus       152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~  194 (220)
T cd03265         152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE  194 (220)
T ss_pred             EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999987777766664        23777777653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.92  E-value=7.8e-26  Score=204.03  Aligned_cols=177  Identities=17%  Similarity=0.125  Sum_probs=125.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-----C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-----P  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-----p  149 (270)
                      +++++||++.|++..    +|+++||++++|+++||+||||||||||+++|+|++.   |++|++ +++... .     .
T Consensus         4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   76 (303)
T TIGR01288         4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR   76 (303)
T ss_pred             EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence            589999999998633    7799999999999999999999999999999999985   888884 333211 0     1


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....++.++....  +.+++.++........+...........++++.+.+..  +..+..||+||+||+.++.++..+|
T Consensus        77 ~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  154 (303)
T TIGR01288        77 VAIGVVPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP  154 (303)
T ss_pred             hcEEEEeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence            1122355543321  22455554433222233221111233456677666643  5567799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +++|+|||+..+|+..++.+.+++..       .|+++|+.+
T Consensus       155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~  196 (303)
T TIGR01288       155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME  196 (303)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            99999999999999877777776652       367777764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.4e-25  Score=194.83  Aligned_cols=183  Identities=13%  Similarity=0.050  Sum_probs=126.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      ++++++||++.|++......+|+++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+  
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence            468999999999742111236799999999999999999999999999999999985   888884 443211   00  


Q ss_pred             ------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                            ....++.++....  +.++..++..+.....+.........+.++++.+++..  +..+..+|+||+||++++.
T Consensus        81 ~~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~  158 (233)
T PRK11629         81 KAELRNQKLGFIYQFHHLL--PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR  158 (233)
T ss_pred             HHHHHhccEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence                  1123355553321  12445444433222122221112234566777777653  3456689999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ++..+++++|+|||+..+|+..++.+.+++..        .|+++|+.+.
T Consensus       159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~  208 (233)
T PRK11629        159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL  208 (233)
T ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999999999999999877777666642        2777777654

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.92  E-value=7.8e-26  Score=207.84  Aligned_cols=179  Identities=13%  Similarity=0.166  Sum_probs=131.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--D  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~  150 (270)
                      .++++||++.|++..    +++++||++++||+++|+||||||||||+++|+|++.   |++|++ +++...   .+  .
T Consensus         2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r   74 (353)
T PRK10851          2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR   74 (353)
T ss_pred             EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence            478999999997633    7799999999999999999999999999999999985   888884 444211   11  1


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~----g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                      ...+++++.. ++ +.+++.++..+.....    +...........++++.+++..  +.++..+|+||+||+++++++.
T Consensus        75 ~i~~v~Q~~~-l~-p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~  152 (353)
T PRK10851         75 KVGFVFQHYA-LF-RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA  152 (353)
T ss_pred             CEEEEecCcc-cC-CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence            2233555532 22 2356655555433221    1111112345567788777653  5677799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      .+++++++|||+..||...++.+.+.+.        ..||++||.+.+
T Consensus       153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea  200 (353)
T PRK10851        153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA  200 (353)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            9999999999999999988877777665        238999998654

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.6e-25  Score=203.92  Aligned_cols=187  Identities=14%  Similarity=0.107  Sum_probs=132.1

Q ss_pred             cceEEeccchhhhhhhh------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC
Q 024225           75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~  147 (270)
                      .++++++||++.|+...      ..+.+++||||+|++||++||+|+||||||||+++|+|++.   |++|++ +++...
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l   79 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL   79 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence            35799999999996321      12457899999999999999999999999999999999985   778873 443211


Q ss_pred             -C---------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC---CcCCCCCCccc
Q 024225          148 -P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (270)
Q Consensus       148 -~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~  213 (270)
                       .         .....++.++.+...++.++..+...+..... +...........++++.+++..   +.++..+|+||
T Consensus        80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq  159 (327)
T PRK11308         80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ  159 (327)
T ss_pred             CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence             0         01233466665422333334333322221111 2222122345577788877742   56778999999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +||+.++.++..++++||+|||+..||...++.+.+++.        ..|+|+||.+..
T Consensus       160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~  218 (327)
T PRK11308        160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV  218 (327)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            999999999999999999999999999988887777775        238888887543

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.92  E-value=7.8e-26  Score=193.76  Aligned_cols=176  Identities=19%  Similarity=0.259  Sum_probs=119.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~  151 (270)
                      ++++|+++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+  ..
T Consensus         1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03259           1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN   73 (213)
T ss_pred             CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence            36789999997632    6799999999999999999999999999999999985   778873 333211   00  11


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..+++++....  ..++..++........+...........++++.+++..  +..+..+|+||+||+.++.++..++++
T Consensus        74 i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~  151 (213)
T cd03259          74 IGMVFQDYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL  151 (213)
T ss_pred             EEEEcCchhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            22244433211  11344333332222222111111233456677666643  345668999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      +|+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  192 (213)
T cd03259         152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE  192 (213)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            999999999999877777776652        266777654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=1.2e-25  Score=191.53  Aligned_cols=155  Identities=18%  Similarity=0.197  Sum_probs=125.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .+++++|+|.|++.+    |++|+||++++|++.|++|+|||||||++|+|.|++.   |+.|.              |.
T Consensus         2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~--------------I~   60 (300)
T COG4152           2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGE--------------IT   60 (300)
T ss_pred             ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCce--------------EE
Confidence            478999999999976    8899999999999999999999999999999999994   55555              44


Q ss_pred             cCCCCcc----------------ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhh
Q 024225          157 MDGFHLY----------------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE  218 (270)
Q Consensus       157 ~dg~~~~----------------~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~  218 (270)
                      ++|..+.                .+.+++.+...+.....|++.+.....+...++.+....  ...+.++|.|+.|++.
T Consensus        61 ~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQ  140 (300)
T COG4152          61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQ  140 (300)
T ss_pred             EcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHH
Confidence            4442221                123555566667777788877666667777888877764  3466799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +..++...|+++|+||||++||+...+.+.+.+.
T Consensus       141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~  174 (300)
T COG4152         141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIF  174 (300)
T ss_pred             HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHH
Confidence            9999999999999999999999987777777766

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.92  E-value=1.3e-25  Score=192.41  Aligned_cols=176  Identities=15%  Similarity=0.120  Sum_probs=121.7

Q ss_pred             EEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        78 l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      ++++|+++.|+ +.    .+++|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++....   +   
T Consensus         2 l~~~~l~~~~~~~~----~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (214)
T TIGR02673         2 IEFHNVSKAYPGGV----AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQL   74 (214)
T ss_pred             EEEEeeeEEeCCCc----eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            68899999994 32    26799999999999999999999999999999999985   778874 3332110   0   


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                          ....++.++....  ...+..++........+.........+.++++.+++..  +..+..+|+||+||++++.++
T Consensus        75 ~~~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  152 (214)
T TIGR02673        75 PLLRRRIGVVFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI  152 (214)
T ss_pred             HHHHhheEEEecChhhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence                1122244443211  11344443333222222211112234456677766653  345569999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ..+++++|+|||+..+|...++.+.+++..       .|+++|+.+
T Consensus       153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  198 (214)
T TIGR02673       153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS  198 (214)
T ss_pred             hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            999999999999999999888777777752       367777764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.3e-25  Score=204.74  Aligned_cols=190  Identities=11%  Similarity=0.105  Sum_probs=130.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCccc-CCCCCC---C-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS-FDSQVK---P-  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~-~~~~~G~~-~~~~~~---~-  148 (270)
                      |++++++||++.|+.......+++|+||+|++||++||+|+||||||||+++|+|++.. ..+++|++ +++...   . 
T Consensus         1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            35799999999996422224478999999999999999999999999999999999841 11467773 444211   0 


Q ss_pred             -------CCceEEeecCCCCccccccCcccChHHHHHhc---CC--CC-CccHHHHHHHHHhhccCC-----CcCCCCCC
Q 024225          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSFD  210 (270)
Q Consensus       149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~---g~--~~-~~~~~~~~~~l~~l~~~~-----~~~~~~~S  210 (270)
                             .....+++++......+.+++.++........   +.  .. ........++++.+++..     +.++..||
T Consensus        81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS  160 (330)
T PRK15093         81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT  160 (330)
T ss_pred             HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence                   11233466665432222233333222111111   10  00 011234567888888763     45677999


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY  264 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~  264 (270)
                      +||+||++++.++..++++||+|||+..||...+..+.+++..        .|+|+||.+..
T Consensus       161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v  222 (330)
T PRK15093        161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML  222 (330)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence            9999999999999999999999999999999888877777662        48888887443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.92  E-value=1.7e-25  Score=204.06  Aligned_cols=186  Identities=13%  Similarity=0.096  Sum_probs=132.5

Q ss_pred             ceEEeccchhhhhhhh---------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC
Q 024225           76 PVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ  145 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~---------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~  145 (270)
                      ++++++||++.|+...         ....+++|+||+|++||++||+|+||||||||+++|+|++.   |++|++ +++.
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G~   83 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLGK   83 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECCE
Confidence            5799999999996421         12457899999999999999999999999999999999985   788884 4442


Q ss_pred             CC-C---------CCceEEeecCCCCccccccCcccChHHHHHhc--CCCCCccHHHHHHHHHhhccC---CCcCCCCCC
Q 024225          146 VK-P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (270)
Q Consensus       146 ~~-~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S  210 (270)
                      .. .         .....++.++......+.++..++..+....+  +...........++++.+++.   .+.++.+||
T Consensus        84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS  163 (331)
T PRK15079         84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS  163 (331)
T ss_pred             ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence            11 0         11234466665321222345544443322222  122111223446777777773   256778999


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +||+||++++.++..++++||+|||+..||...+.++.+++.        ..|+|+||.+..
T Consensus       164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~  225 (331)
T PRK15079        164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV  225 (331)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            999999999999999999999999999999988877777665        238888887543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.92  E-value=1e-25  Score=195.87  Aligned_cols=177  Identities=18%  Similarity=0.208  Sum_probs=121.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p----  149 (270)
                      ++++||++.|++..    +++|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+    
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (235)
T cd03261           1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY   73 (235)
T ss_pred             CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence            36789999997532    6799999999999999999999999999999999985   788874 333211   00    


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ....++.++....  +.+++.++........ +...........++++.+++..  +..+..+|+||+||+.++.++
T Consensus        74 ~~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al  151 (235)
T cd03261          74 RLRRRMGMLFQSGALF--DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL  151 (235)
T ss_pred             HHhcceEEEccCcccC--CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence               1122244443211  1234444433221111 1111111233456677776643  456678999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ..+++++|+|||+..+|+..++.+.+++..        .|+++|+.+.
T Consensus       152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~  199 (235)
T cd03261         152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT  199 (235)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence            999999999999999999877777666652        2677777653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.92  E-value=1.2e-25  Score=193.58  Aligned_cols=180  Identities=17%  Similarity=0.193  Sum_probs=122.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCceEE
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDVATV  154 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~g~~  154 (270)
                      ++++|+++.|++......+++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...  ......+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~   77 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY   77 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence            3678999999752111237799999999999999999999999999999999985   788874 333211  1112222


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      +.++....  ...+..++........+...........++++.+.+..  +..+..||+||+||++++.++..+++++|+
T Consensus        78 v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL  155 (220)
T cd03293          78 VFQQDALL--PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL  155 (220)
T ss_pred             Eecccccc--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            44443221  11344444333222223221112234566777776643  445679999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      |||+..+|+..++.+.+++.        ..|+++|+.+
T Consensus       156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~  193 (220)
T cd03293         156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID  193 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            99999999987777777664        2267777764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.92  E-value=2.9e-25  Score=192.11  Aligned_cols=182  Identities=16%  Similarity=0.073  Sum_probs=124.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      ++++++||++.|++......+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+  
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~   81 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA   81 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence            578999999999752211236799999999999999999999999999999999985   788874 333211   00  


Q ss_pred             ------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                            ....++.++.. +. ..++..++........+.........+.++++.+.+..  +..+..+|+|++||+.++.
T Consensus        82 ~~~~~~~~i~~~~q~~~-l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~  159 (228)
T PRK10584         82 RAKLRAKHVGFVFQSFM-LI-PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR  159 (228)
T ss_pred             HHHHHhheEEEEEcccc-cC-CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence                  11222444322 11 11344343332211122211112234556677776643  4456789999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      ++..+++++|+|||+..+|...++.+.+++.        ..|+++|+.+
T Consensus       160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  208 (228)
T PRK10584        160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ  208 (228)
T ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            9999999999999999999987777777663        2267777764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.92  E-value=1.8e-25  Score=201.55  Aligned_cols=176  Identities=15%  Similarity=0.140  Sum_probs=127.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------  148 (270)
                      .++++|+++.|++..    +|+|+||++++||++||+||||||||||+++|+|++.   |++|++ +++... .      
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~   74 (301)
T TIGR03522         2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ   74 (301)
T ss_pred             EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence            478999999997532    7899999999999999999999999999999999985   888884 333211 1      


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      ...|. ++.+...  ...+++.++..+....++.+.........++++.+++..  +..+..+|+||+||+.++.++..+
T Consensus        75 ~~ig~-~~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        75 RNIGY-LPEHNPL--YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             hceEE-ecCCCCC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            11232 4444322  222455555554444444432222344567777777653  456679999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      |+++|+|||+.++|+..++.+.+++..      .|+++|+.+
T Consensus       152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~  193 (301)
T TIGR03522       152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ  193 (301)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence            999999999999999877777776663      256666654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.8e-25  Score=196.91  Aligned_cols=176  Identities=15%  Similarity=0.131  Sum_probs=124.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-CC-CceEE
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-PP-DVATV  154 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~p-~~g~~  154 (270)
                      ++++|+++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++... .+ ....+
T Consensus         2 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   74 (255)
T PRK11248          2 LQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERGV   74 (255)
T ss_pred             EEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEEE
Confidence            78899999997632    6799999999999999999999999999999999985   888884 443211 11 11223


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      +.++....  ...++.++........+.........+.++++.+++..  +..+..+|+||+||+.++.++..+++++|+
T Consensus        75 v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL  152 (255)
T PRK11248         75 VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL  152 (255)
T ss_pred             EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            55543221  12344444433222223221112234567777776653  445678999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      |||+..+|...++.+.+++..        .|+++|+.+
T Consensus       153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~  190 (255)
T PRK11248        153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE  190 (255)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999877777776542        277777764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.92  E-value=3.2e-25  Score=202.18  Aligned_cols=187  Identities=14%  Similarity=0.151  Sum_probs=130.2

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---Cccc-CCCCCC--
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVK--  147 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~---~G~~-~~~~~~--  147 (270)
                      ..++++++||++.|+.......+++|+||+|++||++||+|+||||||||+++|+|++.   |+   +|++ +++...  
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN   85 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence            34679999999999643223457899999999999999999999999999999999995   53   7763 443211  


Q ss_pred             ---------CCCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcc
Q 024225          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHG  212 (270)
Q Consensus       148 ---------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g  212 (270)
                               ......+++++.....++.++..++..+....+ +...........++++.+++..     +.++.++|+|
T Consensus        86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG  165 (330)
T PRK09473         86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG  165 (330)
T ss_pred             CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence                     011233466665422333334333222222122 1111111234566777776642     3467799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |+||++++.++..++++||+|||+..||...+..+.+++.        ..|||+||.+.
T Consensus       166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~  224 (330)
T PRK09473        166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV  224 (330)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            9999999999999999999999999999988877777665        24889998764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.92  E-value=1.7e-25  Score=192.47  Aligned_cols=178  Identities=17%  Similarity=0.134  Sum_probs=122.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~  150 (270)
                      ++++||++.|++..  ..+++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++....      ..
T Consensus         1 l~~~~l~~~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (220)
T cd03263           1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ   75 (220)
T ss_pred             CEEEeeEEEeCCCC--ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence            46789999997521  126799999999999999999999999999999999985   788874 3332110      01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++.++....  ...+..++........+...........++++.+++..  +..+..+|+||+||++++.++..+++
T Consensus        76 ~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  153 (220)
T cd03263          76 SLGYCPQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS  153 (220)
T ss_pred             hEEEecCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence            122244443221  12344444433322233221111234556677666643  45567899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++|+|||+..+|....+.+.+++..      .|+++|+.+
T Consensus       154 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  193 (220)
T cd03263         154 VLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMD  193 (220)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            9999999999999888887777762      366667664

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.92  E-value=2.7e-25  Score=191.37  Aligned_cols=182  Identities=15%  Similarity=0.062  Sum_probs=123.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      +++++||++.|++......+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+   
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER   77 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence            36789999999642111236799999999999999999999999999999999985   788884 333211   00   


Q ss_pred             -----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                           ....++.++.....  .++..++........+.........+.++++.+++..  +..+..+|+||+||++++.+
T Consensus        78 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  155 (221)
T TIGR02211        78 AKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA  155 (221)
T ss_pred             HHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence                 11233555432211  2344443332211112111111233456677766643  44567899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +..+++++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  204 (221)
T TIGR02211       156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL  204 (221)
T ss_pred             HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999987777776664        23777777653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.92  E-value=2e-25  Score=191.83  Aligned_cols=180  Identities=15%  Similarity=0.118  Sum_probs=124.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~  150 (270)
                      ++++|+++.|++..+...+++++||++++|++++|+|+||||||||+++|+|++.   |++|++ +++....      ..
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   78 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEARR   78 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHHh
Confidence            6789999999763111137799999999999999999999999999999999985   788873 3332111      01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++.++....  ..+++.++........+...........++++.+++..  +..+..+|+||+||++++.++..+++
T Consensus        79 ~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (218)
T cd03266          79 RLGFVSDSTGLY--DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP  156 (218)
T ss_pred             hEEEecCCcccC--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence            122244443211  12445454443333333221112234566777776653  44566899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ++|+|||+..+|....+.+.+++.       ..|+++|+.+
T Consensus       157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  197 (218)
T cd03266         157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ  197 (218)
T ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            999999999999987777777665       2267777764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.92  E-value=1.8e-25  Score=191.17  Aligned_cols=177  Identities=18%  Similarity=0.172  Sum_probs=122.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CCceE
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PDVAT  153 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~~g~  153 (270)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   .....
T Consensus         1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG   73 (210)
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence            36789999997532    6799999999999999999999999999999999985   778874 4432111   01122


Q ss_pred             EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      ++.++....  ..++..++........+.........+.++++.+++..  +..+..+|+||+||+.++.++..+++++|
T Consensus        74 ~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll  151 (210)
T cd03269          74 YLPEERGLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI  151 (210)
T ss_pred             EeccCCcCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            244443221  12344444433222233322222234556677766543  34566899999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +|||+..+|...++.+.+++..       .|+++|+.+.
T Consensus       152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~  190 (210)
T cd03269         152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL  190 (210)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence            9999999999877777776652       3666666543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.92  E-value=2.3e-25  Score=190.55  Aligned_cols=177  Identities=14%  Similarity=0.120  Sum_probs=119.5

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C-----C
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P-----D  150 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p-----~  150 (270)
                      +++|+++.|++..  ..+++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++....  +     .
T Consensus         1 ~~~~l~~~~~~~~--~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (211)
T cd03225           1 ELKNLSFSYPDGA--RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR   75 (211)
T ss_pred             CceeEEEecCCCC--eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence            3578999997521  126799999999999999999999999999999999985   788873 3332110  0     1


Q ss_pred             ceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          151 VATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       151 ~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ...++.++.. .++  ..+..++........+...........++++.+++..  +..+..+|+||+||++++.++..++
T Consensus        76 ~i~~~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p  153 (211)
T cd03225          76 KVGLVFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP  153 (211)
T ss_pred             hceEEecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            1222444431 111  1344333322221122111111233456677666643  4566799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~  195 (211)
T cd03225         154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD  195 (211)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            9999999999999987777777664       2367777764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.1e-25  Score=203.28  Aligned_cols=182  Identities=16%  Similarity=0.158  Sum_probs=126.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++||++.|+.......+|+|+||++++|+++||+||||||||||+|+|+|++.   |++|++ +++....       
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~   77 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL   77 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence            37899999999721111237899999999999999999999999999999999985   788874 3332110       


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         .....+++++....  ..+++.++..+.....+...........++++.+++..  +.++..+|+||+||++++.++
T Consensus        78 ~~~~~~ig~v~q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL  155 (343)
T PRK11153         78 RKARRQIGMIFQHFNLL--SSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL  155 (343)
T ss_pred             HHHhcCEEEEeCCCccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence               01122355443321  12455555544333334322122234566777776653  456679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ..++++||+|||+..||+..++.+.+++..        .|+++|+.+.
T Consensus       156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~  203 (343)
T PRK11153        156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV  203 (343)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999877777776652        3677777643

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.92  E-value=3.6e-25  Score=192.14  Aligned_cols=181  Identities=18%  Similarity=0.159  Sum_probs=123.3

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------  148 (270)
                      ++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....        
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   78 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKELR   78 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHHH
Confidence            7889999999763101137799999999999999999999999999999999995   788873 4432111        


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                        .....++.++....  ..++..++........+...........+.++.+++..  +..+..+|+||+||++++.++.
T Consensus        79 ~~~~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  156 (233)
T cd03258          79 KARRRIGMIFQHFNLL--SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA  156 (233)
T ss_pred             HHHhheEEEccCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence              01122244443221  12344444333222223211111234456677776643  4456789999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~  203 (233)
T cd03258         157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV  203 (233)
T ss_pred             cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999999999999999987777766664        23677777643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.92  E-value=2.9e-25  Score=190.14  Aligned_cols=176  Identities=15%  Similarity=0.149  Sum_probs=121.0

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~  151 (270)
                      ++++|+++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+  ..
T Consensus         1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (213)
T cd03301           1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD   73 (213)
T ss_pred             CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence            36789999997633    6799999999999999999999999999999999985   888873 333211   11  11


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++.++... + ...+..++........+...........++++.+++..  +..+..+|+||+||++++.++..++++
T Consensus        74 i~~~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l  151 (213)
T cd03301          74 IAMVFQNYAL-Y-PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV  151 (213)
T ss_pred             EEEEecChhh-c-cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            2224444321 1 12344444433222222211111223455666666542  455679999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      +|+|||+..+|+...+.+.+++.        ..|+++|+.+
T Consensus       152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~  192 (213)
T cd03301         152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV  192 (213)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            99999999999987777766664        2367777764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.4e-25  Score=204.77  Aligned_cols=178  Identities=12%  Similarity=0.143  Sum_probs=124.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-C--CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-K--PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-~--~p----  149 (270)
                      ++..++.+.|+.    ..+++++||++++||+++|+||||||||||+|+|+|++.   |++|++ +++.. .  .+    
T Consensus        29 ~~~~~~~~~~~~----~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~  101 (400)
T PRK10070         29 LSKEQILEKTGL----SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELR  101 (400)
T ss_pred             ccHHHHHhhcCC----eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHH
Confidence            344444444433    237899999999999999999999999999999999996   888884 44321 1  10    


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                          ....++.++....  +.++..++..+.....+...........++++.+++..  +.++..+|+||+||+++++++
T Consensus       102 ~~~~~~igyv~Q~~~l~--~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL  179 (400)
T PRK10070        102 EVRRKKIAMVFQSFALM--PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL  179 (400)
T ss_pred             HHHhCCEEEEECCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHH
Confidence                1123355543322  22455555554333334322222344567777777653  456779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ..++++||+|||+..+|+..++.+.+++.        ..|+++|+.+..
T Consensus       180 ~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~  228 (400)
T PRK10070        180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA  228 (400)
T ss_pred             hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence            99999999999999999987777777664        237888887653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.92  E-value=4e-25  Score=188.35  Aligned_cols=172  Identities=17%  Similarity=0.084  Sum_probs=120.2

Q ss_pred             Eeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CCce
Q 024225           79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PDVA  152 (270)
Q Consensus        79 ~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~~g  152 (270)
                      +++||++.|++ ..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....    ....
T Consensus         1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i   73 (205)
T cd03226           1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI   73 (205)
T ss_pred             CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence            36789999975 32    7899999999999999999999999999999999985   778874 3332110    0112


Q ss_pred             EEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          153 TVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       153 ~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      .++.++.. .++  ..+..++........+    .......++++.+++..  +..+..+|+||+||++++.++..++++
T Consensus        74 ~~~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  147 (205)
T cd03226          74 GYVMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL  147 (205)
T ss_pred             EEEecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence            22444431 111  1233333322111111    12245567777777653  455679999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +++|||+..+|+..++.+.+++..       .|+++|+.+.
T Consensus       148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~  188 (205)
T cd03226         148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF  188 (205)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            999999999999888887777752       3677777643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=1.4e-25  Score=191.55  Aligned_cols=169  Identities=20%  Similarity=0.237  Sum_probs=117.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      +++++++|+|.|++..    +++||||++++||++||+||||||||||+++|.|+++   |++|++ +++...   +|  
T Consensus         3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~   75 (250)
T COG0411           3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR   75 (250)
T ss_pred             ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence            5689999999999966    9999999999999999999999999999999999995   777663 444311   11  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHh-------cCCCC-----CccHHHHHHHHHhhccCCC--cCCCCCCccc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-------RGAPW-----TFNPLLLLNCLKNLRNQGS--VYAPSFDHGV  213 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-------~g~~~-----~~~~~~~~~~l~~l~~~~~--~~~~~~S~g~  213 (270)
                        ..|. .......-..+.+++.+|.......       ++.+.     ....+...++++.+++...  .....+|.|+
T Consensus        76 iar~Gi-~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          76 IARLGI-ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             HHhccc-eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence              1121 1111111122346666655433211       11110     1112334566777777653  4455899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +++++++.+++.+|++|++|||..++.+.-..++.+++.
T Consensus       155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~  193 (250)
T COG0411         155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIR  193 (250)
T ss_pred             hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999866555555554

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.9e-25  Score=196.89  Aligned_cols=182  Identities=14%  Similarity=0.079  Sum_probs=127.9

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-----
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-----  148 (270)
                      .++++||++.|+.... ...+|+|+||++++||++||+||||||||||+++|+|++.   |++|++ +++... .     
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL   78 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence            4889999999974211 1237899999999999999999999999999999999985   888884 443211 0     


Q ss_pred             ---CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhh
Q 024225          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~  220 (270)
                         .....+++++.. .++.  .++.++..+.....++..........++++.+++.    .+..+..||+||+||++++
T Consensus        79 ~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA  156 (287)
T PRK13637         79 SDIRKKVGLVFQYPEYQLFE--ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA  156 (287)
T ss_pred             HHHhhceEEEecCchhcccc--ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence               011233555531 1111  34544444333333432221223456777777764    3456779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .++..+|++||+|||+..||...+..+.+++.        ..|+++|+.+.
T Consensus       157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  207 (287)
T PRK13637        157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED  207 (287)
T ss_pred             HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999999999999999999988777777664        23777887654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.91  E-value=4.7e-25  Score=191.92  Aligned_cols=178  Identities=18%  Similarity=0.129  Sum_probs=121.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P----  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p----  149 (270)
                      +++++|+++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++... . +    
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~   73 (236)
T TIGR03864         1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL   73 (236)
T ss_pred             CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence            367899999997532    6799999999999999999999999999999999985   788874 333211 0 0    


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....++.++.....  .++..++........+...........++++.+++..  +..+..+|+||+||++++.++..++
T Consensus        74 ~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p  151 (236)
T TIGR03864        74 ARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP  151 (236)
T ss_pred             hhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            11223444432211  2344443332222222211112233456677666543  4566799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  195 (236)
T TIGR03864       152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE  195 (236)
T ss_pred             CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence            9999999999999987777766664        22667776643

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=1.7e-24  Score=175.77  Aligned_cols=180  Identities=17%  Similarity=0.158  Sum_probs=131.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc--CCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQV--------  146 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--~~~~~--------  146 (270)
                      +|++++++|..+.....+.+|++|++.|++||.++|+||||||||||+-+++|+-.   |++|++  .+...        
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r   82 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR   82 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence            78999999999887777889999999999999999999999999999999999984   666652  11111        


Q ss_pred             --CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCc--CCCCCCcccCChhhhhhh
Q 024225          147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV--YAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       147 --~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~--~~~~~S~g~~~rv~~~~~  222 (270)
                        .+.....+++ ..|++- +.++..+|........|-............++.++++...  |+.++|||++||++++++
T Consensus        83 A~~R~~~vGfVF-QSF~Li-p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA  160 (228)
T COG4181          83 AALRARHVGFVF-QSFHLI-PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHhhccceeEEE-Eeeecc-ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence              1111122122 222221 2255555554444444421112223345677778887654  677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK  261 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~  261 (270)
                      ++..|++++-|||+.-||...-+++.+++-        ..+.||||.
T Consensus       161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~  207 (228)
T COG4181         161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP  207 (228)
T ss_pred             hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence            999999999999999999988888888765        338888886

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.91  E-value=5.1e-25  Score=191.03  Aligned_cols=176  Identities=20%  Similarity=0.205  Sum_probs=121.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p----  149 (270)
                      ++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+    
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03218           1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA   73 (232)
T ss_pred             CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence            46789999997532    6799999999999999999999999999999999985   888884 333211   00    


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....++.++....  +.++..++........+.........+.++++.+++..  +..+..+|+||+||++++.++..+
T Consensus        74 ~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  151 (232)
T cd03218          74 RLGIGYLPQEASIF--RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN  151 (232)
T ss_pred             hccEEEecCCcccc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence             1122244443221  12344444433222222211111233456677666543  455668999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ++++|+|||+..+|....+.+.+++.       ..|+++|+.+
T Consensus       152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~  194 (232)
T cd03218         152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR  194 (232)
T ss_pred             CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            99999999999999987777777664       2267777664

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.91  E-value=4.9e-25  Score=190.04  Aligned_cols=177  Identities=16%  Similarity=0.100  Sum_probs=120.5

Q ss_pred             EEeccchhhh-hhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225           78 VEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----  148 (270)
Q Consensus        78 l~~~~l~~~y-~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----  148 (270)
                      ++++|+++.| ++.    .+++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .    
T Consensus         2 l~~~~l~~~~~~~~----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   74 (222)
T PRK10908          2 IRFEHVSKAYLGGR----QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNREV   74 (222)
T ss_pred             EEEEeeEEEecCCC----eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhHH
Confidence            6889999999 432    26799999999999999999999999999999999985   788874 333211   0    


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         .....++.++....+  ..+..++........+...........++++.+.+..  +..+..+|+||+||++++.++
T Consensus        75 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  152 (222)
T PRK10908         75 PFLRRQIGMIFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV  152 (222)
T ss_pred             HHHHhheEEEecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence               011223444432211  1344343332222222211111223445666666543  445679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ..+++++|+|||+..+|...++.+.+++..       .|+++|+.+.
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (222)
T PRK10908        153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL  199 (222)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            999999999999999999877777666652       2677777643

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.91  E-value=4e-25  Score=205.75  Aligned_cols=178  Identities=15%  Similarity=0.158  Sum_probs=125.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-C------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-K------  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-~------  147 (270)
                      ++++++||++.|++..    +|+++||++++||+++|+||||||||||+|+|+|+++   |++|++ +++.. .      
T Consensus         2 ~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~~   74 (402)
T PRK09536          2 PMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSARA   74 (402)
T ss_pred             ceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHHH
Confidence            4789999999998633    7799999999999999999999999999999999985   888873 33321 1      


Q ss_pred             -CCCceEEeecCCCCccccccCcccChHHHHHhc--CCC--CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       148 -~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g~~--~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~  220 (270)
                       ....+. +.++....+  .+++.++....+..+  .+.  ...+...+.+.++.+++..  +..+..+|+||+||+.++
T Consensus        75 ~~~~ig~-v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA  151 (402)
T PRK09536         75 ASRRVAS-VPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA  151 (402)
T ss_pred             HhcceEE-EccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence             111233 444432212  244444333211111  111  1123345567777777753  456779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      .++..++++||+|||+..||...+.++.+++..       .|.++|+.+.
T Consensus       152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~  201 (402)
T PRK09536        152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL  201 (402)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            999999999999999999999777777666552       2666776654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.91  E-value=3.8e-25  Score=189.31  Aligned_cols=176  Identities=16%  Similarity=0.172  Sum_probs=119.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-------  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-------  149 (270)
                      ++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++.....       
T Consensus         1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03262           1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE   73 (213)
T ss_pred             CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence            36789999997632    6799999999999999999999999999999999985   778873 33321100       


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                        ....++..+....  +.++..++...... ..+...........++++.++...  +..+..+|+|++||++++.++.
T Consensus        74 ~~~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  151 (213)
T cd03262          74 LRQKVGMVFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA  151 (213)
T ss_pred             HHhcceEEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence              1122244443211  11344343332211 112211111233456666666543  4566799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      .+++++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~  196 (213)
T cd03262         152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG  196 (213)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            9999999999999999987777766665       2367777664

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.91  E-value=7.4e-25  Score=192.14  Aligned_cols=179  Identities=15%  Similarity=0.156  Sum_probs=123.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (250)
T PRK11264          2 SAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS   74 (250)
T ss_pred             CcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence            3689999999997532    6799999999999999999999999999999999985   788874 3332110      


Q ss_pred             ---------CCceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCCh
Q 024225          149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP  216 (270)
Q Consensus       149 ---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~r  216 (270)
                               .....++.++....  +..+..++....... .+...........++++.+++..  +..+..+|+||+||
T Consensus        75 ~~~~~~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr  152 (250)
T PRK11264         75 QQKGLIRQLRQHVGFVFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR  152 (250)
T ss_pred             chhhHHHHhhhhEEEEecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence                     01122344443221  113444443322111 12111111233456677666643  45667999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +.++.++..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~  206 (250)
T PRK11264        153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF  206 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999999999988877776654       23677777643

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=4e-25  Score=188.97  Aligned_cols=160  Identities=13%  Similarity=0.117  Sum_probs=122.3

Q ss_pred             ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCccc
Q 024225           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAME  171 (270)
Q Consensus        93 ~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~  171 (270)
                      .+.+|+||||++++||.+||+|+||||||||+|+|+|.++   |++|++ ..+....+     +-+..-  ++++++..+
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l-----i~lg~G--f~pelTGre  108 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL-----IELGAG--FDPELTGRE  108 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh-----hhcccC--CCcccchHH
Confidence            4678999999999999999999999999999999999995   666653 22211111     111100  234588888


Q ss_pred             ChHHHHHhcCCCCCccHHHHHHHHHh--hccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH
Q 024225          172 DPKEAHARRGAPWTFNPLLLLNCLKN--LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (270)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~~~~l~~--l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~  249 (270)
                      |........|+......+.+.++.+-  |+...+.....||.||+-|++.+.++..++++||+||.+...|+.+.++..+
T Consensus       109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~  188 (249)
T COG1134         109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE  188 (249)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence            98888888888655555556666553  3334466677999999999999999999999999999999999988888877


Q ss_pred             hhccc-------eEEecccc
Q 024225          250 MFDEK-------CYATSFKE  262 (270)
Q Consensus       250 ~~~~~-------i~v~~~~~  262 (270)
                      .+++.       |+|+||.+
T Consensus       189 rl~e~~~~~~tiv~VSHd~~  208 (249)
T COG1134         189 RLNELVEKNKTIVLVSHDLG  208 (249)
T ss_pred             HHHHHHHcCCEEEEEECCHH
Confidence            77744       78888763

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.91  E-value=5.9e-25  Score=191.65  Aligned_cols=178  Identities=16%  Similarity=0.223  Sum_probs=122.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--D  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~  150 (270)
                      .++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+  .
T Consensus         2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (239)
T cd03296           2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER   74 (239)
T ss_pred             EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence            478999999997632    6799999999999999999999999999999999985   788874 333211   01  1


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCC----CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~----~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                      ...++.++....  +.+++.++..+.....+.    ...........+++.+++..  +..+..+|+||+||++++.++.
T Consensus        75 ~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~  152 (239)
T cd03296          75 NVGFVFQHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA  152 (239)
T ss_pred             ceEEEecCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence            122344443221  123444433322111111    00011123456667666643  4456789999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|+...+.+.+++.        ..|+++|+.+.
T Consensus       153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~  199 (239)
T cd03296         153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE  199 (239)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999999999999999987777776664        23777777653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=7e-25  Score=195.65  Aligned_cols=183  Identities=13%  Similarity=0.104  Sum_probs=125.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      ++++++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|++.   |++|++ +++....   +  
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD   78 (279)
T ss_pred             ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            3689999999997421 1227899999999999999999999999999999999985   778873 3332111   0  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....++.++..... ...++.++..+.....++..........++++.+++..  +..+..||+||+||++++.++..
T Consensus        79 ~~~~i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~  157 (279)
T PRK13650         79 IRHKIGMVFQNPDNQF-VGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM  157 (279)
T ss_pred             HHhhceEEEcChHHhc-ccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence              01223444431111 11344444433322233322112234566677776653  45667999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++++||+|||+..+|+..++.+.+++.        ..|+++|+.+.
T Consensus       158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~  203 (279)
T PRK13650        158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE  203 (279)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            999999999999999987777776654        23677777644

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.91  E-value=7.5e-25  Score=194.44  Aligned_cols=178  Identities=15%  Similarity=0.199  Sum_probs=123.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         6 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (269)
T PRK11831          6 NLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRSR   78 (269)
T ss_pred             ceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChhh
Confidence            5799999999997532    6799999999999999999999999999999999985   888884 4432110      


Q ss_pred             ----CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                          .....++.++....  ..++..++........ +...........++++.+++..  +..+..+|+||+||+.++.
T Consensus        79 ~~~~~~~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lar  156 (269)
T PRK11831         79 LYTVRKRMSMLFQSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALAR  156 (269)
T ss_pred             HHHHhhcEEEEecccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                11122344443221  1234444443321111 1111111223455677766653  4566799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      ++..+++++|+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~  205 (269)
T PRK11831        157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP  205 (269)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence            99999999999999999999887777766652        367777753

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=1.3e-24  Score=185.65  Aligned_cols=173  Identities=18%  Similarity=0.111  Sum_probs=121.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-CC----C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-PP----D  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~p----~  150 (270)
                      +++++||++.|++..    +++++||+|++|+++||+||||||||||+++|+|++.   |++|++ +++... .+    .
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (207)
T PRK13539          2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA   74 (207)
T ss_pred             EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence            589999999997632    6799999999999999999999999999999999984   777774 333211 00    1


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      .+. +..+...  ....+..++........+    .......++++.+++..  +..+..+|+|++||+.++.++..+++
T Consensus        75 ~~~-~~~~~~~--~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  147 (207)
T PRK13539         75 CHY-LGHRNAM--KPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP  147 (207)
T ss_pred             cEE-ecCCCcC--CCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            111 2222111  111333333322111111    12234566777776643  45566899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ++|+|||+..+|...++.+.+++.+       .|+++|+.+.
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  189 (207)
T PRK13539        148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG  189 (207)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            9999999999999888888777763       2677777653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=8.9e-25  Score=186.24  Aligned_cols=172  Identities=19%  Similarity=0.175  Sum_probs=120.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------P  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------~  148 (270)
                      +++++|+++.|++..    +++++||++++||++||+||||||||||+++|+|++.   |++|++ +++...       .
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~   73 (204)
T PRK13538          1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH   73 (204)
T ss_pred             CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence            378899999997632    6799999999999999999999999999999999985   777773 333211       0


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      ...+. +..+...  .+.++..++........+.   .+...+.++++.+++.  .+..+..+|+|++||++++.++..+
T Consensus        74 ~~~~~-~~~~~~~--~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         74 QDLLY-LGHQPGI--KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             hheEE-eCCcccc--CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            01111 2222211  1123444433332222121   2234556677777664  2456679999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK  261 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~  261 (270)
                      ++++|+|||+..+|...++.+.+++..       .|+++|+.
T Consensus       148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  189 (204)
T PRK13538        148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD  189 (204)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh
Confidence            999999999999999888888776652       25666654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.91  E-value=3.7e-25  Score=189.56  Aligned_cols=177  Identities=14%  Similarity=0.086  Sum_probs=119.4

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CCCceEE
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDVATV  154 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p~~g~~  154 (270)
                      +++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   ....+ +
T Consensus         1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~-~   72 (213)
T cd03235           1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIG-Y   72 (213)
T ss_pred             CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheE-E
Confidence            3678999997532    6799999999999999999999999999999999985   778874 443211   11122 2


Q ss_pred             eecCCCCccccccCcccChHHHHHhc-CC---CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      +.++.........++.++........ +.   ..........++++.+.+..  +..+..+|+||+||++++.++..+++
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  152 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD  152 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            44443211111123333322211110 00   01112234556677666542  45667999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ++|+|||+..||+..++.+.+++..       .|+++|+.+.
T Consensus       153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~  194 (213)
T cd03235         153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL  194 (213)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            9999999999999887777776652       3777777653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=6.7e-25  Score=186.07  Aligned_cols=149  Identities=20%  Similarity=0.232  Sum_probs=113.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++||+..|+..+    +|++|||++++||+++|+|+||+|||||+|.|+|++                ++..|. |
T Consensus         2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~----------------~~~~G~-I   60 (237)
T COG0410           2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV----------------RPRSGR-I   60 (237)
T ss_pred             CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCee-E
Confidence            5789999999999855    889999999999999999999999999999999998                555666 6


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCC---CCCccHHHHHHHHHhhcc---------------------------CCCcC
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN---------------------------QGSVY  205 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~---~~~~~~~~~~~~l~~l~~---------------------------~~~~~  205 (270)
                      .++|.++..       .+...+.+.|+   |+..+...-+++.|||..                           -.+..
T Consensus        61 ~~~G~dit~-------~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~  133 (237)
T COG0410          61 IFDGEDITG-------LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR  133 (237)
T ss_pred             EECCeecCC-------CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCc
Confidence            666665432       11112223332   444444444455555543                           33344


Q ss_pred             CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ...+|||++|.+++++++...|++|++|||..++-|...+++.+.+.
T Consensus       134 aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~  180 (237)
T COG0410         134 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK  180 (237)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence            55889999999999999999999999999999999977777766665

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=8.4e-25  Score=194.64  Aligned_cols=180  Identities=17%  Similarity=0.123  Sum_probs=123.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----  149 (270)
                      ++++++||++.|+..   ..+++|+||++++|+++||+||||||||||+++|+|+++   |++|++ +++.....     
T Consensus         3 ~~l~~~~l~~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   76 (274)
T PRK13647          3 NIIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW   76 (274)
T ss_pred             ceEEEEEEEEEeCCC---CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence            468999999999631   127799999999999999999999999999999999985   777773 33321100     


Q ss_pred             --CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225          150 --DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 --~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                        ....++.++.. .+..  .++.++..+.....+.........+.++++.+++.  .+..+..||+|++||++++.++.
T Consensus        77 ~~~~i~~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~  154 (274)
T PRK13647         77 VRSKVGLVFQDPDDQVFS--STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA  154 (274)
T ss_pred             HHhhEEEEecChhhhhcc--CcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence              11222444421 1111  34444433222222221111123345666666654  24566799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~  200 (274)
T PRK13647        155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL  200 (274)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            9999999999999999988877777765       23677777653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.91  E-value=7.2e-25  Score=187.75  Aligned_cols=177  Identities=19%  Similarity=0.122  Sum_probs=120.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----  149 (270)
                      ++++|+++.|++.   ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   +    
T Consensus         1 l~~~~l~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   74 (214)
T cd03292           1 IEFINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP   74 (214)
T ss_pred             CEEEEEEEEeCCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence            3678999999642   126799999999999999999999999999999999985   777773 3332110   0    


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                         ....++.++....  +.++..++........+.........+.+.++.+++..  +..+..+|+||+||+.++.++.
T Consensus        75 ~~~~~i~~v~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~  152 (214)
T cd03292          75 YLRRKIGVVFQDFRLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV  152 (214)
T ss_pred             HHHHheEEEecCchhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH
Confidence               1122244433211  12344444433222222211111223455666665543  3456789999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      .+++++|+|||+..+|+..++.+.+++..       .|+++|+.+
T Consensus       153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~  197 (214)
T cd03292         153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE  197 (214)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            99999999999999999877777776652       367777764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.91  E-value=1.4e-24  Score=187.55  Aligned_cols=184  Identities=17%  Similarity=0.176  Sum_probs=122.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      +++++||++.|++......+++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+   
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR   77 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence            36789999999753111136799999999999999999999999999999999985   888874 333211   00   


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH-HH-HHHHHHhhccC---CCcCCCCCCcccCChhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP-LL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~-~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~  220 (270)
                          ....++.++........++..++........+....... .. ..++++.+.+.   .+..+..+|+||+||++++
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  157 (228)
T cd03257          78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA  157 (228)
T ss_pred             HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence                112224444321111124444443322222221111111 11 13566666653   2455678999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .++..+++++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  208 (228)
T cd03257         158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV  208 (228)
T ss_pred             HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            99999999999999999999988777777664        22677777653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.91  E-value=7.1e-25  Score=190.58  Aligned_cols=177  Identities=18%  Similarity=0.142  Sum_probs=121.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----  149 (270)
                      ++++|+++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++....   +    
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (236)
T cd03219           1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA   73 (236)
T ss_pred             CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence            36789999997522    6799999999999999999999999999999999985   788884 3332110   0    


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCC----------CCccHHHHHHHHHhhccCC--CcCCCCCCcccCCh
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP  216 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~----------~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~r  216 (270)
                       ....++.++....  +.++..++........+..          .........++++.+++..  +..+..+|+||+||
T Consensus        74 ~~~i~~v~q~~~l~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  151 (236)
T cd03219          74 RLGIGRTFQIPRLF--PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR  151 (236)
T ss_pred             hcCEEEEecccccc--cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence             1122344443211  1244444443322221111          0111223456677776643  44567999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +.++.++..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~  205 (236)
T cd03219         152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV  205 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            999999999999999999999999987777766664       23777887754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=7.8e-25  Score=196.36  Aligned_cols=182  Identities=14%  Similarity=0.066  Sum_probs=128.6

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      .++++||++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK   78 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4789999999974211 1237899999999999999999999999999999999985   888884 4442110      


Q ss_pred             -----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhh
Q 024225          149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED  219 (270)
Q Consensus       149 -----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~  219 (270)
                           .....+++++.. .++.  .++.++..+.....+...........++++.+++.   .+..+..+|+||+||+++
T Consensus        79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l  156 (290)
T PRK13634         79 KLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI  156 (290)
T ss_pred             hHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence                 011233555531 1221  35555544433334432222223456777877775   245677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +.++..+|++||+|||+..||+.....+.+++.        ..|+++|+.+.
T Consensus       157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~  208 (290)
T PRK13634        157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED  208 (290)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999999987777776664        23777777653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.91  E-value=6.1e-25  Score=187.99  Aligned_cols=176  Identities=18%  Similarity=0.119  Sum_probs=121.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~  150 (270)
                      ++++|+++.|++..    +++|+||++++| +++|+||||||||||+++|+|++.   |++|++ +++....      ..
T Consensus         1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (211)
T cd03264           1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR   72 (211)
T ss_pred             CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence            46789999997632    679999999999 999999999999999999999985   788874 3332111      01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++.++....  ..++..++........+...........++++.+++..  +..+..+|+||+||+.++.++..+++
T Consensus        73 ~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  150 (211)
T cd03264          73 RIGYLPQEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS  150 (211)
T ss_pred             heEEecCCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            122244443321  12344444433222222221111233456666666543  45667899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~  191 (211)
T cd03264         151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED  191 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence            9999999999999888888777763      2677777653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.91  E-value=1e-24  Score=186.22  Aligned_cols=172  Identities=16%  Similarity=0.162  Sum_probs=120.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----Cc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----DV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----~~  151 (270)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++.....     ..
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (208)
T cd03268           1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR   73 (208)
T ss_pred             CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence            36789999997532    7799999999999999999999999999999999985   778873 33321110     11


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++..+....  +..++.++........+    .+.....++++.+.+..  +..+..+|+|++||++++.++..++++
T Consensus        74 i~~~~q~~~~~--~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  147 (208)
T cd03268          74 IGALIEAPGFY--PNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL  147 (208)
T ss_pred             EEEecCCCccC--ccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence            22244443211  12344444333222222    12344566677776643  445678999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +|+|||+..+|...++.+.+++..       .|+++|+.+
T Consensus       148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  187 (208)
T cd03268         148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS  187 (208)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            999999999999888777766652       267777664

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.91  E-value=8.3e-25  Score=186.29  Aligned_cols=174  Identities=11%  Similarity=0.000  Sum_probs=119.4

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC------
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP------  149 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p------  149 (270)
                      ++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+      
T Consensus         1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~   73 (206)
T TIGR03608         1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF   73 (206)
T ss_pred             CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence            468899997532    6799999999999999999999999999999999985   777773 333210   00      


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....++..+... + +..+..++........+.........+.++++.+++..  +..+..||+|++||+.++.++..
T Consensus        74 ~~~~i~~~~q~~~~-~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~  151 (206)
T TIGR03608        74 RREKLGYLFQNFAL-I-ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK  151 (206)
T ss_pred             HHhCeeEEecchhh-c-cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence              112223333221 1 12344443333222222221112334556777766643  45667899999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +++++|+|||+..+|...++.+.++++.       .|+++|+.+
T Consensus       152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  195 (206)
T TIGR03608       152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE  195 (206)
T ss_pred             CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999999999999888877777752       267777764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.2e-24  Score=201.17  Aligned_cols=174  Identities=12%  Similarity=0.063  Sum_probs=126.6

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-----CCC-------
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-----VKP-------  148 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-----~~~-------  148 (270)
                      ++.+.|+..    .+++|+||++++||+++|+|+||||||||+++|+|++.   |++|++ +++.     ...       
T Consensus        29 ~~~~~~g~~----~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~  101 (382)
T TIGR03415        29 EILDETGLV----VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR  101 (382)
T ss_pred             HHHHhhCCE----EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence            566667653    37899999999999999999999999999999999996   888884 4442     100       


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         .....+++++...+  +.++..++..+.....++..........++++.+++..  +.++..+|+||+||++++.++
T Consensus       102 ~~r~~~i~~vfQ~~~l~--p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL  179 (382)
T TIGR03415       102 RLRTHRVSMVFQKFALM--PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF  179 (382)
T ss_pred             HHhcCCEEEEECCCcCC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence               01223355543322  23566666655443344433223345567788777754  556779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ..+|+++|+|||+..||+..++.+.+++.        ..|+++|+.++.
T Consensus       180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~  228 (382)
T TIGR03415       180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA  228 (382)
T ss_pred             hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            99999999999999999988777777664        248999988753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.91  E-value=1e-24  Score=190.45  Aligned_cols=176  Identities=15%  Similarity=0.118  Sum_probs=122.4

Q ss_pred             EEeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        78 l~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      ++++||++.|++ ..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   +   
T Consensus         1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (242)
T cd03295           1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL   73 (242)
T ss_pred             CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence            367899999975 22    6799999999999999999999999999999999985   888884 4442111   0   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC----CcCCCCCCcccCChhhhhhhhc
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~----~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                       ....++.++....  +.++..++........+.........+.++++.+++..    +..+..+|+||+||++++.++.
T Consensus        74 ~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~  151 (242)
T cd03295          74 RRKIGYVIQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA  151 (242)
T ss_pred             hcceEEEccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence             1122244443221  12444444433222222211112234567777777653    4456789999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      .+++++|+|||+..+|....+.+.+++..        .|+++|+.+
T Consensus       152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~  197 (242)
T cd03295         152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID  197 (242)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            99999999999999999777766665542        267777664

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.91  E-value=1e-24  Score=200.69  Aligned_cols=164  Identities=14%  Similarity=0.128  Sum_probs=121.0

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C--------CCceEEeecCCCCcc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P--------PDVATVLPMDGFHLY  163 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~--------p~~g~~i~~dg~~~~  163 (270)
                      +++|+||+|++||+++|+||||||||||+++|+|++.   |++|++ +++...   .        .....++.++.... 
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~-   83 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF-   83 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC-
Confidence            7899999999999999999999999999999999996   888884 444211   0        11223344443222 


Q ss_pred             ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225          164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       164 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe  241 (270)
                       +++++.++..+.....+...........++++.+++..  +.++..+|+||+||+++++++..++++|++|||+..+|+
T Consensus        84 -~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~  162 (363)
T TIGR01186        84 -PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP  162 (363)
T ss_pred             -CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence             23566666655444444432223345667777777753  557779999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhc--------cceEEeccccch
Q 024225          242 GVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       242 ~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ..++.+.+.+.        ..||++|+.++.
T Consensus       163 ~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea  193 (363)
T TIGR01186       163 LIRDSMQDELKKLQATLQKTIVFITHDLDEA  193 (363)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            88777777664        248999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.91  E-value=1.1e-24  Score=181.16  Aligned_cols=149  Identities=17%  Similarity=0.200  Sum_probs=113.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++                +|+.|. +.+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~   61 (173)
T cd03246           1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL----------------RPTSGR-VRL   61 (173)
T ss_pred             CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc----------------CCCCCe-EEE
Confidence            36789999997521  23679999999999999999999999999999999998                677888 778


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      +|..+..  .+    ....+...++ ++...... .++.+++          +|+|++||++++.++..+++++|+|||+
T Consensus        62 ~g~~~~~--~~----~~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt  124 (173)
T cd03246          62 DGADISQ--WD----PNELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN  124 (173)
T ss_pred             CCEEccc--CC----HHHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            8865432  11    1123334444 33322222 3666666          9999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          237 LFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ..+|...++.+.+++.       ..|+++|+.+
T Consensus       125 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  157 (173)
T cd03246         125 SHLDVEGERALNQAIAALKAAGATRIVIAHRPE  157 (173)
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            9999988777777665       2367777764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.91  E-value=1.7e-24  Score=177.33  Aligned_cols=169  Identities=16%  Similarity=0.177  Sum_probs=117.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-------CCCC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-------VKPP  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-------~~~p  149 (270)
                      +.+++|.+.|+...      =..+++|+.||+|+|+||||||||||+++|+|+..   |.+|++ +++.       ..+|
T Consensus         2 l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RP   72 (231)
T COG3840           2 LALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAERP   72 (231)
T ss_pred             ccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccCC
Confidence            56788999998743      45678899999999999999999999999999983   666663 2221       1122


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCC-----CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-----WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-----~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~  222 (270)
                        ..++++++. ++ .++++.+|..     +|..     ...+.+.+..++..++++  .+..+.++|||++||+++++.
T Consensus        73 --VSmlFQEnN-LF-aHLtV~qNig-----LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc  143 (231)
T COG3840          73 --VSMLFQENN-LF-AHLTVAQNIG-----LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC  143 (231)
T ss_pred             --hhhhhhccc-cc-hhhhhhhhhc-----ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence              222333332 11 2244433321     2221     122334455556666664  355677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +.-+..|+++||||..||+..+.++..++.        ..+.|+|..+.+
T Consensus       144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da  193 (231)
T COG3840         144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA  193 (231)
T ss_pred             HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence            999999999999999999998888888776        337788877543

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.91  E-value=7.5e-25  Score=183.55  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=113.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++|+++.|        +++++||++++|++++|+||||||||||+++|+|++                +|+.|. +
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~G~-i   57 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR----------------PPASGE-I   57 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------------CCCCce-E
Confidence            368999999988        569999999999999999999999999999999998                677888 7


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCC-CCCc---cHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~---~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      .++|..+..     .......++..++ ++..   ......++.+++.....     +|+||+||++++.++..+++++|
T Consensus        58 ~~~g~~~~~-----~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~lll  127 (182)
T cd03215          58 TLDGKPVTR-----RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLI  127 (182)
T ss_pred             EECCEECCc-----cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEE
Confidence            788865432     1111122333444 3321   11222466666655322     99999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK  261 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~  261 (270)
                      +|||+..+|...++.+.+++..       .|+++|+.
T Consensus       128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  164 (182)
T cd03215         128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL  164 (182)
T ss_pred             ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            9999999999887777776652       26666665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1e-24  Score=193.65  Aligned_cols=178  Identities=16%  Similarity=0.137  Sum_probs=120.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P----  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p----  149 (270)
                      +++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....  .    
T Consensus         1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   73 (271)
T PRK13638          1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL   73 (271)
T ss_pred             CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence            378899999997532    7799999999999999999999999999999999985   778873 3332110  0    


Q ss_pred             ---CceEEeecCCCC-ccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225          150 ---DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ---~~g~~i~~dg~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ....++.++... +..  .+..++........+...........++++.+++.  .+..+..+|+||+||++++.++
T Consensus        74 ~~~~~i~~v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL  151 (271)
T PRK13638         74 ALRQQVATVFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL  151 (271)
T ss_pred             HHHhheEEEeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence               112224444221 111  12222222211222221111112334566665553  2455679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ..+++++|+|||+..+|...++.+.+++..       .|+++|+.+.
T Consensus       152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  198 (271)
T PRK13638        152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL  198 (271)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            999999999999999999888777777652       2677777643

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=205.53  Aligned_cols=188  Identities=16%  Similarity=0.179  Sum_probs=142.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCccc-CCCC--------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASS-FDSQ--------  145 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~-~~~~G~~-~~~~--------  145 (270)
                      ++++++||++.|......+.+++||||++.+||++||+|+|||||||+++.|.|++... ....|++ +++.        
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            47999999999987655567899999999999999999999999999999999999521 1124663 4442        


Q ss_pred             ---CCCCCceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccCC----CcCCCCCCcccCChh
Q 024225          146 ---VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV  217 (270)
Q Consensus       146 ---~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~----~~~~~~~S~g~~~rv  217 (270)
                         ...+....+++++.....++-++......+....++ ...........++++.+++..    +.|+++|||||+||+
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence               113344455888887777655554433333333333 223334455677888888753    248889999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .++.+++.+|++||.|||+..||...+.++.++++        -.+||+||..+
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V  217 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV  217 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH
Confidence            99999999999999999999999999999999888        23899999843

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.91  E-value=4.6e-25  Score=183.38  Aligned_cols=148  Identities=22%  Similarity=0.297  Sum_probs=113.0

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..    +++++||++++||+++|+||||||||||+++|+|++                +|..|. +.+
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~   59 (173)
T cd03230           1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL----------------KPDSGE-IKV   59 (173)
T ss_pred             CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EEE
Confidence            35789999997532    679999999999999999999999999999999998                677888 778


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      +|..+...       ....+...++ ++........++.+++.         +|+||+||+.++.++..+++++++|||+
T Consensus        60 ~g~~~~~~-------~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt  123 (173)
T cd03230          60 LGKDIKKE-------PEEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPT  123 (173)
T ss_pred             CCEEcccc-------hHhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            88654321       1122334444 33322222235566654         9999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          237 LFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ..+|...++.+.+++..       .|+++|+.+
T Consensus       124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~  156 (173)
T cd03230         124 SGLDPESRREFWELLRELKKEGKTILLSSHILE  156 (173)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence            99999888887777762       266666654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.91  E-value=4.6e-25  Score=184.20  Aligned_cols=153  Identities=22%  Similarity=0.290  Sum_probs=112.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..    +++++||++++|+++||+||||||||||+++|+|++                +|+.|. +.+
T Consensus         1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~G~-i~~   59 (178)
T cd03229           1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE----------------EPDSGS-ILI   59 (178)
T ss_pred             CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCceE-EEE
Confidence            36789999997632    679999999999999999999999999999999998                677888 778


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      +|..+..  .+  ..........++ ++........++.+++...       +|+|++||+.++.++..+++++|+|||+
T Consensus        60 ~g~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          60 DGEDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             CCEEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            8865432  11  001122333443 2221211123555665543       9999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          237 LFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      ..+|...++.+.+++..        .|+++|+.+
T Consensus       129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~  162 (178)
T cd03229         129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD  162 (178)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999877777776642        256666653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.91  E-value=1.9e-24  Score=195.41  Aligned_cols=219  Identities=15%  Similarity=0.180  Sum_probs=169.0

Q ss_pred             eeeeecccCccccccccccccccccccchhhccccC-----ccceEEeccchhhhhhhh-------cccccccccceecC
Q 024225           38 SFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQR-----EIPVVEARCMDEVYDALA-------QRLLPTSALASNVN  105 (270)
Q Consensus        38 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~-------~~v~~l~~isl~i~  105 (270)
                      .+.+.. ....+.+|+.+++.|++.+....+...+.     ..+++++++|...|.-..       ..+.+++++||++.
T Consensus       233 ~G~ivE-~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~  311 (534)
T COG4172         233 HGEIVE-TGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLR  311 (534)
T ss_pred             ccEEee-cCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEec
Confidence            344443 33578889999999999877777665433     234799999999995321       23678999999999


Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------CC--CceEEeecCCCCccccccCcccChH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP--DVATVLPMDGFHLYLSQLDAMEDPK  174 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------~p--~~g~~i~~dg~~~~~~~l~~~~~~~  174 (270)
                      +|+.+||+|+||||||||...|.+++    +..|.+ |++...        .|  ..-+++++|.|--.++.+++.+-..
T Consensus       312 ~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~  387 (534)
T COG4172         312 RGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE  387 (534)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence            99999999999999999999999999    566884 655321        22  3457799999988887788766665


Q ss_pred             HHHHhcCC--CCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH
Q 024225          175 EAHARRGA--PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (270)
Q Consensus       175 ~~~~~~g~--~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~  249 (270)
                      +....++-  .......++.+.++.+++..   +.|+.+|||||+||++++.++.++|+++++|||++.||-..+.++.+
T Consensus       388 EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~  467 (534)
T COG4172         388 EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD  467 (534)
T ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence            55555542  22233455667777888764   57889999999999999999999999999999999999999999999


Q ss_pred             hhcc--------ceEEeccc
Q 024225          250 MFDE--------KCYATSFK  261 (270)
Q Consensus       250 ~~~~--------~i~v~~~~  261 (270)
                      +++.        -+||+||.
T Consensus       468 LLr~LQ~k~~LsYLFISHDL  487 (534)
T COG4172         468 LLRDLQQKHGLSYLFISHDL  487 (534)
T ss_pred             HHHHHHHHhCCeEEEEeccH
Confidence            8882        26777776

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.2e-24  Score=195.07  Aligned_cols=182  Identities=14%  Similarity=0.122  Sum_probs=126.7

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      +++++||++.|+.... ...+|+|+||+|++|++++|+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            3789999999974211 1237799999999999999999999999999999999985   888873 4432110      


Q ss_pred             -----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhh
Q 024225          149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVED  219 (270)
Q Consensus       149 -----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~  219 (270)
                           .....++.++.. .++.  .++.++..+.....+.+.......+.++++.+++..   +..+..+|+||+||+++
T Consensus        78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai  155 (288)
T PRK13643         78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI  155 (288)
T ss_pred             cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence                 011223555431 2221  244444443333334322222234566677777642   45667999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +.++..++++||+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~  206 (288)
T PRK13643        156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD  206 (288)
T ss_pred             HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            999999999999999999999988887777765       23777777653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.91  E-value=1.5e-24  Score=189.11  Aligned_cols=177  Identities=18%  Similarity=0.147  Sum_probs=120.0

Q ss_pred             EEeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p----  149 (270)
                      ++++||++.|++ ..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....  +    
T Consensus         1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   73 (241)
T cd03256           1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL   73 (241)
T ss_pred             CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence            367899999975 22    6799999999999999999999999999999999985   788874 4432111  0    


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCC
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~  215 (270)
                          ....++.++....  ..+++.++.......        .+...........++++.+++..  +..+..+|+||+|
T Consensus        74 ~~~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  151 (241)
T cd03256          74 RQLRRQIGMIFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ  151 (241)
T ss_pred             HHHHhccEEEcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence                1122244443211  113443333221100        01111112234456677766643  4566799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      |++++.++..+++++|+|||+..+|...++.+.+++..        .|+++|+.+.
T Consensus       152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  207 (241)
T cd03256         152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL  207 (241)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999999999999999999999999777766666642        3677777654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.91  E-value=1.1e-24  Score=196.49  Aligned_cols=161  Identities=15%  Similarity=0.132  Sum_probs=114.6

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------CCceEEeecCCCCcccccc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------PDVATVLPMDGFHLYLSQL  167 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------p~~g~~i~~dg~~~~~~~l  167 (270)
                      +|+|+||++++|+++||+||||||||||+|+|+|++.   |++|++ +++... .      ...|. +.++...  ...+
T Consensus         8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~q~~~~--~~~~   81 (302)
T TIGR01188         8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VPQYASV--DEDL   81 (302)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ecCCCCC--CCCC
Confidence            7799999999999999999999999999999999985   888884 333211 1      11232 4444322  1224


Q ss_pred             CcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHH
Q 024225          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (270)
Q Consensus       168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~  245 (270)
                      ++.++..+.....+...........++++.+++..  +..+..||+||+||+.++.++..+|++||+|||+..+|+..++
T Consensus        82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~  161 (302)
T TIGR01188        82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR  161 (302)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence            55555544333334322222234567777777653  5566799999999999999999999999999999999998777


Q ss_pred             HHHHhhcc-------ceEEecccc
Q 024225          246 DVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       246 ~l~~~~~~-------~i~v~~~~~  262 (270)
                      .+.+++..       .|+++|+.+
T Consensus       162 ~l~~~l~~~~~~g~tvi~~sH~~~  185 (302)
T TIGR01188       162 AIWDYIRALKEEGVTILLTTHYME  185 (302)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCHH
Confidence            77666652       266667664

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.8e-24  Score=192.71  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=123.4

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C--
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P--  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p--  149 (270)
                      |.+++++||++.|++..   .+++|+||++++||++||+|+||||||||+++|+|++.   |++|++ +++....  +  
T Consensus         1 ~~~l~~~~l~~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          1 MHLIETRDLCYSYSGSK---EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR   74 (277)
T ss_pred             CceEEEEEEEEEeCCCC---ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            35789999999996321   26799999999999999999999999999999999985   788874 3432111  0  


Q ss_pred             ---CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 ---DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ---~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ....++..+.. .+.  ..++.++........++..........++++.+++..  +..+..+|+||+||+.++.++
T Consensus        75 ~~~~~i~~v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL  152 (277)
T PRK13652         75 EVRKFVGLVFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI  152 (277)
T ss_pred             HHHhheEEEecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence               11222444431 111  1344443332222222211111223456666666543  456779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ..++++||+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  200 (277)
T PRK13652        153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL  200 (277)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            99999999999999999977777766664        22677777643

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.91  E-value=1.6e-24  Score=187.37  Aligned_cols=175  Identities=15%  Similarity=0.105  Sum_probs=122.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCccc-CCCCCC---C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASS-FDSQVK---P  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll-----~~~~~~~G~~-~~~~~~---~  148 (270)
                      ++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++     .   |++|++ +++...   .
T Consensus         1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~   73 (227)
T cd03260           1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD   73 (227)
T ss_pred             CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence            46789999997633    779999999999999999999999999999999998     6   788884 433211   0


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccCCC--cC--CCCCCcccCChh
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQGS--VY--APSFDHGVGDPV  217 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~~~--~~--~~~~S~g~~~rv  217 (270)
                            .....++.++... +  .+++.++........+.... .......++++.+++...  ..  +..||+||+||+
T Consensus        74 ~~~~~~~~~i~~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv  150 (227)
T cd03260          74 VDVLELRRRVGMVFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL  150 (227)
T ss_pred             hHHHHHHhhEEEEecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence                  0112235554432 2  24554444332222222110 012345567777766532  23  478999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  201 (227)
T cd03260         151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ  201 (227)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH
Confidence            999999999999999999999999877777776652      367777765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.7e-24  Score=193.97  Aligned_cols=182  Identities=15%  Similarity=0.122  Sum_probs=126.4

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----  149 (270)
                      .++++||++.|++... ...+++|+||++++||++||+||||||||||+++|+|++.   |++|++ +++.....     
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK   78 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            5789999999974210 1236799999999999999999999999999999999986   888883 44421100     


Q ss_pred             ------CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhh
Q 024225          150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED  219 (270)
Q Consensus       150 ------~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~  219 (270)
                            ....++.++.. .++  .+++.++..+.....+...........++++.+++.   .+..+..+|+||+||+++
T Consensus        79 ~~~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l  156 (287)
T PRK13641         79 NLKKLRKKVSLVFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI  156 (287)
T ss_pred             hHHHHHhceEEEEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence                  11223555431 122  134444443322222221111223456677777774   245677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +.++..++++||+|||+..+|+...+.+.+++..       .|+++|+.+.
T Consensus       157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~  207 (287)
T PRK13641        157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD  207 (287)
T ss_pred             HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999999999999999999999877777776662       2677777653

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.91  E-value=1.3e-24  Score=187.94  Aligned_cols=165  Identities=13%  Similarity=0.082  Sum_probs=115.3

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      +.++++++.|+...    +++|+||++++|++++|+||||||||||+++|+|++.   |++             |. +.+
T Consensus        23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~-------------G~-i~~   81 (224)
T cd03220          23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDS-------------GT-VTV   81 (224)
T ss_pred             hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCc-------------eE-EEE
Confidence            77889999998744    7799999999999999999999999999999999983   444             44 344


Q ss_pred             CCCCcc--------ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          158 DGFHLY--------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       158 dg~~~~--------~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      +|....        .+.+++.++........+...........++++.+.+..  +..+..+|+|++||++++.++..++
T Consensus        82 ~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p  161 (224)
T cd03220          82 RGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP  161 (224)
T ss_pred             CCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            432211        112333333332222222211111123445565555543  4456799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       162 ~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~  204 (224)
T cd03220         162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS  204 (224)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999999999999977666666554       23677777643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.7e-24  Score=189.63  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=120.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCCC---
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVKP---  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~~---  148 (270)
                      ++++||++.|++..    +++|+||++++||+++|+|+||||||||+++|+|++.   |+     +|++ +++....   
T Consensus         2 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~~   74 (247)
T TIGR00972         2 IEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDKK   74 (247)
T ss_pred             EEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEccccc
Confidence            67899999997632    6799999999999999999999999999999999985   66     7773 3332111   


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC----C--CcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----G--SVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~----~--~~~~~~~S~g~~~  215 (270)
                            .....+++++.. ++.  .+..++........+. ...........+++.+++.    .  +..+..+|+||+|
T Consensus        75 ~~~~~~~~~i~~v~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q  151 (247)
T TIGR00972        75 IDVVELRRRVGMVFQKPN-PFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQ  151 (247)
T ss_pred             cchHHHHhheEEEecCcc-cCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHH
Confidence                  011222444322 111  3333333322222221 1111123345667776664    2  3456799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      |+.++.++..+++++|+|||+..+|...+..+.+++..      .|+++|+.+
T Consensus       152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~  204 (247)
T TIGR00972       152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQ  204 (247)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHH
Confidence            99999999999999999999999999877777766652      377778775

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.2e-24  Score=189.90  Aligned_cols=177  Identities=18%  Similarity=0.167  Sum_probs=119.4

Q ss_pred             EEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        78 l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      ++++||++.|+ +..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....       
T Consensus         2 l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (243)
T TIGR02315         2 LEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKKL   74 (243)
T ss_pred             eEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHHH
Confidence            67899999997 422    6799999999999999999999999999999999985   778873 3332110       


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCC
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~  215 (270)
                         .....++.++.....  .+++.++.......        ++...........++++.+++..  +..+..+|+||+|
T Consensus        75 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  152 (243)
T TIGR02315        75 RKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQ  152 (243)
T ss_pred             HHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence               011222444432111  13333332211000        00001112234456677666543  4566789999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |++++.++..+++++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       153 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~  208 (243)
T TIGR02315       153 RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL  208 (243)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999999999999999999999999977776666654        23677777654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.1e-24  Score=189.35  Aligned_cols=183  Identities=17%  Similarity=0.095  Sum_probs=123.5

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC--C
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP--P  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~--p  149 (270)
                      |+.++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.-.  .|++|++ +++....  +
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   76 (250)
T PRK14247          1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD   76 (250)
T ss_pred             CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence            45789999999997632    679999999999999999999999999999999998400  1257773 3332110  0


Q ss_pred             -----CceEEeecCCCCccccccCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           ....++.++....  ..+++.++........+..  .......+.++++.+++.      .+..+..+|+|++||
T Consensus        77 ~~~~~~~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr  154 (250)
T PRK14247         77 VIELRRRVQMVFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR  154 (250)
T ss_pred             HHHHhccEEEEeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence                 1122344443221  1244444443322111111  011123345667766653      244567999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ++++.++..+++++++|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  207 (250)
T PRK14247        155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ  207 (250)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            9999999999999999999999999888877777763      3677776643

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.91  E-value=2.2e-24  Score=190.30  Aligned_cols=173  Identities=13%  Similarity=0.080  Sum_probs=122.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCce
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDVA  152 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~g  152 (270)
                      +.++++||++.|++..    +|+++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...  .....
T Consensus        11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i   83 (257)
T PRK11247         11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT   83 (257)
T ss_pred             CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence            5699999999997633    6799999999999999999999999999999999985   778874 333211  01112


Q ss_pred             EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEE
Q 024225          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (270)
Q Consensus       153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~il  230 (270)
                      .++.++.....  ..++.++...     +... .......++++.+++..  +..+..+|+||+||++++.++..+++++
T Consensus        84 ~~v~q~~~l~~--~~tv~enl~~-----~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll  155 (257)
T PRK11247         84 RLMFQDARLLP--WKKVIDNVGL-----GLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL  155 (257)
T ss_pred             EEEecCccCCC--CCcHHHHHHh-----cccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            22444432211  1233332221     1111 11234566777777653  4556799999999999999999999999


Q ss_pred             EEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          231 IVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       231 Ild~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~  196 (257)
T PRK11247        156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999999999988877766664        22778887653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.91  E-value=3.9e-24  Score=184.98  Aligned_cols=176  Identities=16%  Similarity=0.186  Sum_probs=124.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      ++++++||++.|++..    +++|+||++++||+++|+||||||||||+++|+|++.   |++|++ +++...   .+  
T Consensus         6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   78 (225)
T PRK10247          6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI   78 (225)
T ss_pred             ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence            4689999999997533    7799999999999999999999999999999999985   888884 343211   11  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                        ....++..+.. ++.  .+..++........+  .........++++.+++..   +..+..+|+|++||+.++.++.
T Consensus        79 ~~~~i~~~~q~~~-l~~--~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~  153 (225)
T PRK10247         79 YRQQVSYCAQTPT-LFG--DTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ  153 (225)
T ss_pred             HHhccEEEecccc-ccc--ccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence              11223444432 221  234333322111111  1112334567788777742   4567799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|+..++.+.+++..        .|+++|+.+.
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~  200 (225)
T PRK10247        154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE  200 (225)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence            99999999999999999888777765552        2677777653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.8e-24  Score=188.89  Aligned_cols=178  Identities=16%  Similarity=0.115  Sum_probs=122.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++|+++.|++..    +++++||++++||+++|+||||||||||+++|+|++.   |++|++ +++....       
T Consensus         2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (242)
T PRK11124          2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence            478999999997633    6799999999999999999999999999999999985   777873 3332110       


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhh
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~  219 (270)
                            .....++.++....  ..++..++.... ....+...........+.++.+++..  +..+..+|+||+||+++
T Consensus        75 ~~~~~~~~~i~~~~q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l  152 (242)
T PRK11124         75 KAIRELRRNVGMVFQQYNLW--PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI  152 (242)
T ss_pred             hhHHHHHhheEEEecCcccc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence                  01122244433211  113333333211 11122211111233455666666643  44567899999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +.++..+++++|+|||+..+|+..++.+.+++..       .|+++|+.+.
T Consensus       153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  203 (242)
T PRK11124        153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV  203 (242)
T ss_pred             HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999999999999999999999888888777762       2677777643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=188.83  Aligned_cols=177  Identities=18%  Similarity=0.176  Sum_probs=119.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      .+++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+  
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (241)
T PRK10895          2 ATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHA   74 (241)
T ss_pred             ceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4689999999997532    6799999999999999999999999999999999985   788873 333211   00  


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ....+++.+.....  .++..++........+ ...........++++.+++..  +..+..+|+|++||++++.++
T Consensus        75 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  152 (241)
T PRK10895         75 RARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL  152 (241)
T ss_pred             HHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence               11222444432111  1333333322111111 111111223456666665543  445678999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      ..+++++|+|||+..+|...++.+.+++.       ..|+++|+.
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~  197 (241)
T PRK10895        153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV  197 (241)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence            99999999999999999987776665554       236777765

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.6e-24  Score=195.64  Aligned_cols=181  Identities=12%  Similarity=0.122  Sum_probs=128.0

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------  147 (270)
                      .++++||++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|++.   |++|++ +++...       
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK   78 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence            4889999999975311 1237899999999999999999999999999999999996   888883 332100       


Q ss_pred             -------------------------CCCceEEeecCC-CCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC
Q 024225          148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (270)
Q Consensus       148 -------------------------~p~~g~~i~~dg-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~  201 (270)
                                               ....| +++++. ..+..  .++.++..+.....+...........++++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~  155 (305)
T PRK13651         79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVG-VVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD  155 (305)
T ss_pred             cccccccccccccccccccchHHHHHhceE-EEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence                                     00123 355542 11121  24444443333333433222234456778877774


Q ss_pred             ---CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       202 ---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                         .+..+..+|+||+||++++.++..++++||+|||+..+|+...+.+.++++       ..|+++|+.+.
T Consensus       156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~  227 (305)
T PRK13651        156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN  227 (305)
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH
Confidence               245677999999999999999999999999999999999987777777664       23788888753

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.91  E-value=1.7e-24  Score=188.87  Aligned_cols=177  Identities=16%  Similarity=0.151  Sum_probs=122.3

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------  148 (270)
                      ++++|+++.|++..    +++|+||++++||++||+||||||||||+++|+|++.   |++|++ +++....        
T Consensus         2 l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (240)
T PRK09493          2 IEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDERL   74 (240)
T ss_pred             EEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHHH
Confidence            67899999997532    6799999999999999999999999999999999985   788873 3332111        


Q ss_pred             -CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                       .....++.++....  +.+++.++..+... ..+...........++++.+++..  +..+..||+||+||+.++.++.
T Consensus        75 ~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~  152 (240)
T PRK09493         75 IRQEAGMVFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA  152 (240)
T ss_pred             HhhceEEEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence             01122244443211  11344333322111 112211112234456777776643  4556789999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  198 (240)
T PRK09493        153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF  198 (240)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999999999999999988887777774       23777777654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.91  E-value=1.8e-24  Score=179.47  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=112.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++                +|..|. +.+
T Consensus         1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~----------------~~~~G~-i~~   61 (171)
T cd03228           1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY----------------DPTSGE-ILI   61 (171)
T ss_pred             CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCE-EEE
Confidence            36789999997631  12679999999999999999999999999999999998                677888 778


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      +|..+..  .+    ....+...++ ++...... .++.+++          +|+|++||+.++.++..+++++|+|||+
T Consensus        62 ~g~~~~~--~~----~~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~  124 (171)
T cd03228          62 DGVDLRD--LD----LESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT  124 (171)
T ss_pred             CCEEhhh--cC----HHHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            8764321  11    1122334454 33322221 3556665          9999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          237 LFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ..+|...++.+.+++..      .|+++|+.+
T Consensus       125 ~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~  156 (171)
T cd03228         125 SALDPETEALILEALRALAKGKTVIVIAHRLS  156 (171)
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            99999888777777652      256666654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.91  E-value=1.1e-24  Score=184.21  Aligned_cols=159  Identities=13%  Similarity=0.088  Sum_probs=115.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++|+++.|++......+++++||++++|++++|+||||||||||+++|+|++.              ..|+.|. +.
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------------~~~~~G~-i~   67 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--------------AGVITGE-IL   67 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc--------------CCCcceE-EE
Confidence            57899999999752111226799999999999999999999999999999999862              1367788 77


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~  235 (270)
                      ++|..+.          .......++ ++........++.+++.......  .+|+|++||+.++.++..+++++|+|||
T Consensus        68 ~~g~~~~----------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP  135 (192)
T cd03232          68 INGRPLD----------KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEP  135 (192)
T ss_pred             ECCEehH----------HHhhhceEEecccCccccCCcHHHHHHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCC
Confidence            7776432          112233444 32222222235555554422111  8999999999999999999999999999


Q ss_pred             CCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          236 YLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       236 ~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +..+|...++.+.+++..       .|+++|+.+
T Consensus       136 ~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         136 TSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence            999999877777776652       277778765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.91  E-value=1.1e-24  Score=181.76  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=115.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..  ..+++++||++++||+++|+||||||||||+++|+|++                +|..|. +.+
T Consensus         1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~   61 (178)
T cd03247           1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL----------------KPQQGE-ITL   61 (178)
T ss_pred             CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC----------------CCCCCE-EEE
Confidence            36789999997531  12679999999999999999999999999999999998                677888 778


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      +|..+..     .  ....+...++ ++...... .++.+++       +..+|+|++||+.++.++..+++++|+|||+
T Consensus        62 ~g~~~~~-----~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~  126 (178)
T cd03247          62 DGVPVSD-----L--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT  126 (178)
T ss_pred             CCEEHHH-----H--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            8864321     1  1123334454 33322222 3566666       6789999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          237 LFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ..+|...++.+.+++..      .|+++|+.+.
T Consensus       127 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  159 (178)
T cd03247         127 VGLDPITERQLLSLIFEVLKDKTLIWITHHLTG  159 (178)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            99999888777777652      3677777643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.90  E-value=3.9e-24  Score=188.59  Aligned_cols=181  Identities=14%  Similarity=0.133  Sum_probs=122.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC------CC
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV------KP  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~------~~  148 (270)
                      ++++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++..      ..
T Consensus         5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~   77 (258)
T PRK11701          5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA   77 (258)
T ss_pred             ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence            4699999999997632    6799999999999999999999999999999999985   788874 33321      10


Q ss_pred             --C--------CceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccCC---CcCCCCCCcccC
Q 024225          149 --P--------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG  214 (270)
Q Consensus       149 --p--------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~  214 (270)
                        +        ....++..+........++..++..+.....+... ........++++.+....   +..+..+|+||+
T Consensus        78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~  157 (258)
T PRK11701         78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ  157 (258)
T ss_pred             CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence              0        01223444432111111222222221111111110 011223456677776642   356679999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ||++++.++..+++++|+|||+..+|....+.+.+.+.        ..|+++|+.+.
T Consensus       158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~  214 (258)
T PRK11701        158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV  214 (258)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            99999999999999999999999999987777777653        22677777644

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.90  E-value=2.5e-24  Score=191.09  Aligned_cols=175  Identities=15%  Similarity=0.160  Sum_probs=121.8

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---------
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---------  148 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---------  148 (270)
                      .++|+++.|+...    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++....         
T Consensus        26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~   98 (269)
T cd03294          26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE   98 (269)
T ss_pred             hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence            4568999998743    6799999999999999999999999999999999985   788873 3332110         


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                        .....++.++....  +.+++.++........+.........+.++++.+++..  +..+..+|+||+||++++.++.
T Consensus        99 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~  176 (269)
T cd03294          99 LRRKKISMVFQSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA  176 (269)
T ss_pred             hhcCcEEEEecCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence              11123344443221  12444444433222222211112234556677776653  4566799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      .++++||+|||+..+|...++.+.+++.        ..|+++|+.+
T Consensus       177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~  222 (269)
T cd03294         177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD  222 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999999999999987777777654        2267777764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.90  E-value=2.6e-24  Score=189.81  Aligned_cols=177  Identities=17%  Similarity=0.181  Sum_probs=121.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      +++++||++.|++..    +|+++||++++|++++|+||||||||||+++|+|+++   |++|++ +++...   .+   
T Consensus         2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (258)
T PRK13548          2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL   74 (258)
T ss_pred             eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence            478999999997633    6799999999999999999999999999999999985   888884 333211   00   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc--
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG--  224 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~--  224 (270)
                       ....++..+....+  .+++.++........+...........++++.+++..  +..+..+|+|++||++++.++.  
T Consensus        75 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~  152 (258)
T PRK13548         75 ARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL  152 (258)
T ss_pred             hhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence             11223444432211  1344333222111111111111233456677766643  5567799999999999999998  


Q ss_pred             ----cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          225 ----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       225 ----~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                          .+++++|+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~  202 (258)
T PRK13548        153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN  202 (258)
T ss_pred             cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence                48999999999999999877776666642        267777764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.90  E-value=1.7e-24  Score=187.62  Aligned_cols=174  Identities=12%  Similarity=0.109  Sum_probs=118.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C-----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P-----  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~-----  148 (270)
                      ++++||++.|++..    +++|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .     
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (230)
T TIGR03410         1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA   73 (230)
T ss_pred             CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence            46789999997532    7799999999999999999999999999999999985   888884 333211   0     


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---cCCCcCCCCCCcccCChhhhhhhhcc
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---~~~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      .....++..+... + +.++..++..+.....+.   ........+++.+.   ...+..+..+|+|++||+.++.++..
T Consensus        74 ~~~i~~~~q~~~~-~-~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  148 (230)
T TIGR03410        74 RAGIAYVPQGREI-F-PRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT  148 (230)
T ss_pred             HhCeEEeccCCcc-c-CCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            1112234444321 1 123443433322222111   11122234444443   22355677899999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      +++++|+|||+..+|...++.+.+++.+        .|+++|+.+.
T Consensus       149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  194 (230)
T TIGR03410       149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF  194 (230)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence            9999999999999999888877776652        2677777753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4.4e-24  Score=187.59  Aligned_cols=182  Identities=15%  Similarity=0.119  Sum_probs=122.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCCccc-CCCCCCC---
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVKP---  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~--~~~G~~-~~~~~~~---  148 (270)
                      .|+++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++....  |++|++ +++....   
T Consensus         4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            36799999999997532    6799999999999999999999999999999999863111  367773 3332110   


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC------CcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~  215 (270)
                            .....++.++.. ++.  .+..++..+.....+.. .......+.+.++.+++..      +..+..+|+||+|
T Consensus        80 ~~~~~~~~~i~~v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q  156 (253)
T PRK14242         80 VDVVELRRRVGMVFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ  156 (253)
T ss_pred             cCHHHHhhcEEEEecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence                  011222444432 121  23444433322222221 1111233445566655421      3456789999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~  210 (253)
T PRK14242        157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ  210 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence            99999999999999999999999999888777777652      3677777643

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.90  E-value=3.8e-24  Score=186.74  Aligned_cols=178  Identities=15%  Similarity=0.139  Sum_probs=123.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....       
T Consensus         2 ~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (242)
T TIGR03411         2 ILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI   74 (242)
T ss_pred             eEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence            588999999997632    6799999999999999999999999999999999985   888873 3432111       


Q ss_pred             -CCceEEeecCCCCccccccCcccChHHHHHh-cC-------CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChh
Q 024225          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPV  217 (270)
Q Consensus       149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g-------~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv  217 (270)
                       .....++..+....  +.++..++....... .+       ...........++++.+++..  +..+..+|+|++||+
T Consensus        75 ~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv  152 (242)
T TIGR03411        75 ARAGIGRKFQKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL  152 (242)
T ss_pred             HhcCeeEeccccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence             01122244333211  123444433322110 00       000112234566777776653  456678999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      .++.++..+++++++|||+..+|...++.+.+++.      ..|+++|+.+.
T Consensus       153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  204 (242)
T TIGR03411       153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF  204 (242)
T ss_pred             HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            99999999999999999999999988777777665      23677777643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2e-24  Score=192.26  Aligned_cols=178  Identities=16%  Similarity=0.092  Sum_probs=121.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----  149 (270)
                      ++++||++.|++.   ..+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|++ +++....   +    
T Consensus         2 l~~~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (274)
T PRK13644          2 IRLENVSYSYPDG---TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQGI   75 (274)
T ss_pred             EEEEEEEEEcCCC---CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHHH
Confidence            6889999999631   126799999999999999999999999999999999985   788874 3332110   0    


Q ss_pred             -CceEEeecCCCC-ccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 -DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 -~~g~~i~~dg~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                       ....+++++... +..  .+..++..+.....+...........++++.+++..  +..+..||+||+||+.++.++..
T Consensus        76 ~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~  153 (274)
T PRK13644         76 RKLVGIVFQNPETQFVG--RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM  153 (274)
T ss_pred             HhheEEEEEChhhhccc--chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence             112224444321 111  344444333222223221112233456667666643  45667999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +++++|+|||+..+|+..+..+.+++.       ..|+++|+.+.
T Consensus       154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~  198 (274)
T PRK13644        154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE  198 (274)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            999999999999999977766666654       22677777654

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.90  E-value=3.3e-24  Score=189.88  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=124.1

Q ss_pred             eEEeccchhhhhhhh-----cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--
Q 024225           77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~-----~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--  148 (270)
                      +++++||++.|++..     ....+++|+||++++||++||+||||||||||+++|+|++.   |++|++ +++....  
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~   78 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL   78 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence            588999999996310     01237799999999999999999999999999999999985   888884 4432110  


Q ss_pred             --------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCCh
Q 024225          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 --------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~r  216 (270)
                              .....++.++........+++.++........ ++..........++++.+++.   .+..+..+|+||+||
T Consensus        79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr  158 (265)
T TIGR02769        79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR  158 (265)
T ss_pred             CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence                    01123355543211112234433332222111 222112233456777777764   245667999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++++.++..++++||+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~  213 (265)
T TIGR02769       159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL  213 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            999999999999999999999999976666655554        22677777643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.90  E-value=1.4e-24  Score=186.91  Aligned_cols=174  Identities=17%  Similarity=0.152  Sum_probs=117.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p----  149 (270)
                      ++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+    
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (222)
T cd03224           1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA   73 (222)
T ss_pred             CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence            46789999997632    6799999999999999999999999999999999985   788873 333211   00    


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhh-ccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l-~~~--~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                       ....++.++....  +.++..++........+  ..........+++.+ ...  .+..+..+|+|++||+.++.++..
T Consensus        74 ~~~i~~~~q~~~~~--~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~  149 (222)
T cd03224          74 RAGIGYVPEGRRIF--PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS  149 (222)
T ss_pred             hcCeEEeccccccC--CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence             1122244443211  12344333332221111  111122234455554 222  345667899999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +++++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  193 (222)
T cd03224         150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR  193 (222)
T ss_pred             CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            999999999999999987777777765       2266777664

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3e-24  Score=191.56  Aligned_cols=181  Identities=15%  Similarity=0.121  Sum_probs=122.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----  149 (270)
                      ++++++||++.|++..  ..+++++||+|++||+++|+||||||||||+++|+|+++   |++|++ +++.....     
T Consensus         4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13635          4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD   78 (279)
T ss_pred             ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            4689999999996421  227799999999999999999999999999999999985   777773 44321110     


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....++.++..... ...++.++........+...........++++.+++..  ...+..+|+|++||++++.++..
T Consensus        79 ~~~~i~~~~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~  157 (279)
T PRK13635         79 VRRQVGMVFQNPDNQF-VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL  157 (279)
T ss_pred             HhhheEEEEeCHHHhc-ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence              11222444431011 11234333332222222221111233456666666543  45667999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      +|++||+|||+..+|+..++.+.+++.        ..|.++|+.+
T Consensus       158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~  202 (279)
T PRK13635        158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD  202 (279)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence            999999999999999987777777664        1266666654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=1.2e-24  Score=179.24  Aligned_cols=136  Identities=17%  Similarity=0.196  Sum_probs=106.4

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++||++.|++..    ++++++|++++||+++|+||||||||||+++|+|++                +|+.|. +.+
T Consensus         1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~----------------~~~~G~-v~~   59 (163)
T cd03216           1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY----------------KPDSGE-ILV   59 (163)
T ss_pred             CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EEE
Confidence            36789999997632    679999999999999999999999999999999998                788888 788


Q ss_pred             CCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~  237 (270)
                      +|..+..  .+   ..+..+...++                       .+++|+||+||+.++.++..+++++++|||+.
T Consensus        60 ~g~~~~~--~~---~~~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~  111 (163)
T cd03216          60 DGKEVSF--AS---PRDARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA  111 (163)
T ss_pred             CCEECCc--CC---HHHHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            8864322  00   00111112222                       12299999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          238 FLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       238 ~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      .+|...++.+.+++..       .|+++|+.+
T Consensus       112 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  143 (163)
T cd03216         112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLD  143 (163)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            9999888888777752       266777654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4e-24  Score=187.88  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=121.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCCC
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVKP  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~~  148 (270)
                      +.+++++||++.|++..    +++|+||++++||++||+||||||||||+++|+|+++   |     ++|++ +++....
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267          2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence            45789999999997632    6799999999999999999999999999999999984   4     47773 3332110


Q ss_pred             -----C----CceEEeecCCCCccccccCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccC------CCcCCCCCCc
Q 024225          149 -----P----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (270)
Q Consensus       149 -----p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~~------~~~~~~~~S~  211 (270)
                           +    ....++.++....  ..++..++........+..  .........++++.+++.      .+..+..+|+
T Consensus        75 ~~~~~~~~~~~~i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  152 (253)
T PRK14267         75 SPDVDPIEVRREVGMVFQYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG  152 (253)
T ss_pred             ccccChHHHhhceeEEecCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence                 0    1122244443211  1234444443222111211  111112344556665542      2345678999


Q ss_pred             ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |++||++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  210 (253)
T PRK14267        153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ  210 (253)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence            999999999999999999999999999999888777777652      3677777643

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.90  E-value=1.3e-24  Score=185.08  Aligned_cols=152  Identities=14%  Similarity=0.064  Sum_probs=112.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCC---CCceE
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVAT  153 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~---p~~g~  153 (270)
                      .+.++||+|.|+.......+++++||++++|++++|+||||||||||+++|+|++                +   |+.|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~~~~G~   66 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT----------------EGNVSVEGD   66 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC----------------CCCCCcceE
Confidence            5788999999976422344789999999999999999999999999999999998                4   77888


Q ss_pred             EeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhhhhhccCCc
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                       +.++|..+...       .....+..++ ++........++.+++...    .+..+..+|+|++||+.++.++..+++
T Consensus        67 -i~i~g~~~~~~-------~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~  138 (202)
T cd03233          67 -IHYNGIPYKEF-------AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRAS  138 (202)
T ss_pred             -EEECCEECccc-------hhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCC
Confidence             77888654321       1112223333 2221111123555555432    344566899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ++|+|||+..+|...++.+.+++.
T Consensus       139 llllDEPt~~LD~~~~~~~~~~l~  162 (202)
T cd03233         139 VLCWDNSTRGLDSSTALEILKCIR  162 (202)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHH
Confidence            999999999999977776666655

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.90  E-value=3.4e-24  Score=188.89  Aligned_cols=179  Identities=15%  Similarity=0.128  Sum_probs=123.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      +.++++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.   |++|++ +++....      
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   76 (257)
T PRK10619          4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD   76 (257)
T ss_pred             ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence            3589999999997632    6799999999999999999999999999999999985   777873 3332110      


Q ss_pred             --------------CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC---CcCCCCCC
Q 024225          149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFD  210 (270)
Q Consensus       149 --------------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S  210 (270)
                                    .....++.++... + ..+++.++..+... ..+...........++++.+++..   +..+..+|
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l-~-~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  154 (257)
T PRK10619         77 GQLKVADKNQLRLLRTRLTMVFQHFNL-W-SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS  154 (257)
T ss_pred             cccccccchHHHHHhhceEEEecCccc-C-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence                          0112224444321 1 11344443332111 112111112234566777777653   34567999


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +|++||++++.++..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~  214 (257)
T PRK10619        155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  214 (257)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999999999999999988887777655       23777777643

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4e-24  Score=188.53  Aligned_cols=182  Identities=12%  Similarity=0.108  Sum_probs=120.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK-----  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~-----  147 (270)
                      ..++++|+++.|++..    +|+++||++++|+++||+||||||||||+++|+|++.-  .+|++|++ +++...     
T Consensus         3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~   78 (258)
T PRK14241          3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV   78 (258)
T ss_pred             ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence            4689999999997632    77999999999999999999999999999999999840  00257763 333211     


Q ss_pred             CC----CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          148 PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       148 ~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                      .+    ....++..+....  ..+++.++........+. ..........++++.+++.      .+..+..+|+|++||
T Consensus        79 ~~~~~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  156 (258)
T PRK14241         79 DPVAVRRTIGMVFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR  156 (258)
T ss_pred             ChHHHhcceEEEccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence            00    1122234332211  113444433322222221 1111112334556655542      234567899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +.++.++..+++++|+|||+..+|+...+.+.+++..      .|+++|+.+.
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~  209 (258)
T PRK14241        157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ  209 (258)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            9999999999999999999999999877777776652      3677777653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.90  E-value=5.7e-24  Score=183.59  Aligned_cols=180  Identities=19%  Similarity=0.157  Sum_probs=123.2

Q ss_pred             EEeccchhhhhhhh---cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CC--C---CCC-
Q 024225           78 VEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD--S---QVK-  147 (270)
Q Consensus        78 l~~~~l~~~y~~~~---~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~--~---~~~-  147 (270)
                      ++++||++.|++..   ....+++|+||++++||+++|+||||||||||+++|+|++.   |++|++ ++  +   ... 
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~~   78 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLAQ   78 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchhh
Confidence            78899999996411   11236799999999999999999999999999999999985   888884 43  2   110 


Q ss_pred             -C--------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCC
Q 024225          148 -P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGD  215 (270)
Q Consensus       148 -~--------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~  215 (270)
                       .        .....++.++... . ..+++.++........+...........++++.+++..   +..+..+|+|++|
T Consensus        79 ~~~~~~~~~~~~~i~~~~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q  156 (224)
T TIGR02324        79 ASPREVLEVRRKTIGYVSQFLRV-I-PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQ  156 (224)
T ss_pred             cCHHHHHHHHhcceEEEeccccc-C-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence             0        0112234444321 1 12334333332222223221112234456677776643   3466799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      |++++.++..+++++|+|||+..+|...++.+.+++..       .|+++|+.+
T Consensus       157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~  210 (224)
T TIGR02324       157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE  210 (224)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999888887777762       277777754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=3.5e-24  Score=182.04  Aligned_cols=161  Identities=15%  Similarity=0.081  Sum_probs=111.3

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-C-----C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-P-----D  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-p-----~  150 (270)
                      ++++|+++.|++..    +++++||++++||++||+||||||||||+++|+|+++   |++|++ +++.... .     .
T Consensus         2 l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~   74 (200)
T PRK13540          2 LDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQK   74 (200)
T ss_pred             EEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHHh
Confidence            78899999997633    6799999999999999999999999999999999985   677763 3332110 0     0


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++..+....  +..++.++..... .  ..  .+.....++++.+....  +..+..+|+|++||++++.++..+++
T Consensus        75 ~i~~~~q~~~~~--~~~tv~~~~~~~~-~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~  147 (200)
T PRK13540         75 QLCFVGHRSGIN--PYLTLRENCLYDI-H--FS--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK  147 (200)
T ss_pred             heEEeccccccC--cCCCHHHHHHHHH-h--cC--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            111122222111  1133333222111 0  01  11234556666665543  34556899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ++|+|||+..+|....+.+.+++.
T Consensus       148 ~lilDEP~~~LD~~~~~~l~~~l~  171 (200)
T PRK13540        148 LWLLDEPLVALDELSLLTIITKIQ  171 (200)
T ss_pred             EEEEeCCCcccCHHHHHHHHHHHH
Confidence            999999999999988877777776

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=7.6e-24  Score=181.83  Aligned_cols=176  Identities=15%  Similarity=0.086  Sum_probs=123.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CC
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PD  150 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~  150 (270)
                      ++++++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.   |++|++ +++....    ..
T Consensus        10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~   82 (214)
T PRK13543         10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR   82 (214)
T ss_pred             ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence            4689999999997633    6799999999999999999999999999999999985   788874 4432111    01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++..+...  ...++..++........+.   .......++++.+++..  +..+..+|+|++||++++.++..+++
T Consensus        83 ~i~~~~q~~~~--~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  157 (214)
T PRK13543         83 FMAYLGHLPGL--KADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP  157 (214)
T ss_pred             ceEEeecCccc--ccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            12223333221  1113444433322221121   12233456666666542  55667999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ++++|||+..+|...++.+.+++..       .|+++|+.+.
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (214)
T PRK13543        158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA  199 (214)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence            9999999999999888888777752       2777777643

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.8e-24  Score=191.28  Aligned_cols=180  Identities=16%  Similarity=0.118  Sum_probs=124.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|++.   ..+++++||++++||++||+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         4 ~~l~~~~l~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~   77 (283)
T PRK13636          4 YILKVEELNYNYSDG---THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL   77 (283)
T ss_pred             ceEEEEeEEEEeCCC---CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence            468999999999631   127799999999999999999999999999999999985   788873 3332110      


Q ss_pred             ---CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                         .....++.++.. .+..  .+..++........+++...........++.+++..  +..+..+|+||+||+.++.+
T Consensus        78 ~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara  155 (283)
T PRK13636         78 MKLRESVGMVFQDPDNQLFS--ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV  155 (283)
T ss_pred             HHHHhhEEEEecCcchhhcc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence               011223555431 1111  344444433222333322222234556667666643  55677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +..+++++|+|||+..+|...++.+.+++.        ..++++|+.+.
T Consensus       156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~  204 (283)
T PRK13636        156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI  204 (283)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            999999999999999999987776666554        22566676643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.90  E-value=4.8e-24  Score=189.08  Aligned_cols=185  Identities=16%  Similarity=0.138  Sum_probs=121.4

Q ss_pred             ceEEeccchhhhhhhh-----cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-
Q 024225           76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~-----~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-  148 (270)
                      ++++++||++.|+...     ....+++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++.... 
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~   79 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF   79 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence            4689999999996311     01237899999999999999999999999999999999985   778873 3332110 


Q ss_pred             --C----CceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhh
Q 024225          149 --P----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (270)
Q Consensus       149 --p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~  218 (270)
                        .    ....++.++........++..++....... .+...........++++.+++.   .+..+..+|+||+||++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~  159 (267)
T PRK15112         80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG  159 (267)
T ss_pred             CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence              0    112224443321111112222222111111 1111111123455677777763   24456789999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ++.++..+++++|+|||+..+|+..++.+.+++..        .|+++|+.+.
T Consensus       160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~  212 (267)
T PRK15112        160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM  212 (267)
T ss_pred             HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence            99999999999999999999999877777666652        3677777643

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.90  E-value=3.9e-24  Score=181.93  Aligned_cols=169  Identities=16%  Similarity=0.082  Sum_probs=116.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------D  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------~  150 (270)
                      ++++||++.|++..    +++++||+|++|+++||+|+||||||||+++|+|++.   |++|++ +++.....      .
T Consensus         1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (201)
T cd03231           1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR   73 (201)
T ss_pred             CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence            36789999997633    6799999999999999999999999999999999984   777773 33321100      0


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++.++.. +. ...+..++....     .. ......+.++++.+++..  +..+..||+|++||++++.++..+++
T Consensus        74 ~i~~~~q~~~-~~-~~~tv~e~l~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  145 (201)
T cd03231          74 GLLYLGHAPG-IK-TTLSVLENLRFW-----HA-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP  145 (201)
T ss_pred             heEEeccccc-cC-CCcCHHHHHHhh-----cc-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            1111222211 11 112322222111     01 113345566777776653  44567899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK  261 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~  261 (270)
                      ++|+|||+..+|...++.+.+++..       .|+++|+.
T Consensus       146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~  185 (201)
T cd03231         146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD  185 (201)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence            9999999999999888888887752       25666655

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4.4e-24  Score=186.50  Aligned_cols=174  Identities=14%  Similarity=0.061  Sum_probs=121.0

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---  148 (270)
                      ..++++|+++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .   
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   74 (241)
T PRK14250          2 NEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID   74 (241)
T ss_pred             ceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence            4589999999997532    6799999999999999999999999999999999985   778873 333211   0   


Q ss_pred             -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhc
Q 024225          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                       .....++.++... ..  .+..++......    ..........++++.+++.   ....+..+|+||+||+.++.++.
T Consensus        75 ~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~  147 (241)
T PRK14250         75 LRRKIGMVFQQPHL-FE--GTVKDNIEYGPM----LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA  147 (241)
T ss_pred             hhhcEEEEecCchh-ch--hhHHHHHhcchh----hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence             0112234444321 11  222222211100    0111223455677777664   24566799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|...++.+.+.+.        ..|+++|+.+.
T Consensus       148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~  194 (241)
T PRK14250        148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ  194 (241)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence            9999999999999999987777766664        22777887753

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.6e-24  Score=191.67  Aligned_cols=182  Identities=10%  Similarity=0.044  Sum_probs=124.7

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      .++++||++.|+.... ...+|+|+||+|++||++||+||||||||||+++|+|++.   |++|++ +++....   +  
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK   78 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            3789999999964211 1237899999999999999999999999999999999985   778873 3432110   0  


Q ss_pred             ------CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-C--CcCCCCCCcccCChhhh
Q 024225          150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-G--SVYAPSFDHGVGDPVED  219 (270)
Q Consensus       150 ------~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-~--~~~~~~~S~g~~~rv~~  219 (270)
                            ....+++++.. .++.  .++.++..+.....++..........++++.+++. .  +..+..+|+||+||+++
T Consensus        79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l  156 (286)
T PRK13646         79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI  156 (286)
T ss_pred             hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence                  01222555421 1111  23333333322222322111223445677777764 2  35677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +.++..+++++|+|||+..+|+.....+.+++.        ..|+++|+.+.
T Consensus       157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~  208 (286)
T PRK13646        157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE  208 (286)
T ss_pred             HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            999999999999999999999988877777765        22777787654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=5.2e-24  Score=190.01  Aligned_cols=180  Identities=14%  Similarity=0.091  Sum_probs=121.9

Q ss_pred             EEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------
Q 024225           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------  148 (270)
                      ++++||++.|++... ...+|+++||++++|++++|+||||||||||+++|+|++.   |++|++ +++... .      
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNKD   79 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccC
Confidence            789999999975210 1236799999999999999999999999999999999985   788874 333211 0      


Q ss_pred             ----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhh
Q 024225          149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       149 ----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~  220 (270)
                          .....++.++.. .++.  .++.++..+.....+.........+.++++.+++..   +..+..||+||+||+.++
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  157 (280)
T PRK13649         80 IKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA  157 (280)
T ss_pred             HHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence                011223444431 1111  244443332222222211111223455666666642   456679999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      .++..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~  206 (280)
T PRK13649        158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD  206 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            99999999999999999999987777777655       2267777764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.9e-24  Score=188.23  Aligned_cols=176  Identities=14%  Similarity=0.104  Sum_probs=117.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|++..    +++++||++++||++||+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   76 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTAK   76 (237)
T ss_pred             cEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHHH
Confidence            4689999999997532    7799999999999999999999999999999999985   788873 3332110      


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-cC--CCcCCCCCCcccCChhhhhhhh
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~-~~--~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                        .....++..+...+  +.+++.++.......  .........+..+++.+. ..  ....+..+|+|++||+.++.++
T Consensus        77 ~~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al  152 (237)
T PRK11614         77 IMREAVAIVPEGRRVF--SRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL  152 (237)
T ss_pred             HHHhCEEEeccCcccC--CCCcHHHHHHHhhhc--cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence              01122244433211  113333332221100  010011122333444442 22  2345678999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  198 (237)
T PRK11614        153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN  198 (237)
T ss_pred             HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            99999999999999999988777777665       2267777754

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.4e-24  Score=187.28  Aligned_cols=183  Identities=13%  Similarity=0.084  Sum_probs=122.7

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC--
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP--  148 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~--  148 (270)
                      ..++++++|+++.|++..    +|+|+||++++|+++||+|+||||||||+++|+|++.-.  +|++|++ +++....  
T Consensus         9 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~   84 (258)
T PRK14268          9 AQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP   84 (258)
T ss_pred             cceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence            356799999999997532    679999999999999999999999999999999998400  1267773 3332110  


Q ss_pred             -------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~  215 (270)
                             .....++.++.. ++.  .+..++........+...........++++.++..      .+..+..+|+|++|
T Consensus        85 ~~~~~~~~~~i~~v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q  161 (258)
T PRK14268         85 DVDVVELRKNVGMVFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQ  161 (258)
T ss_pred             cchHHHHhhhEEEEecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHH
Confidence                   011222443322 111  34444443322222321111112234556655442      23456689999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |++++.++..+++++|+|||+..+|...+..+.+++..      .|+++|+.+.
T Consensus       162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~  215 (258)
T PRK14268        162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ  215 (258)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence            99999999999999999999999999888887777753      3677777643

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.90  E-value=1.2e-23  Score=185.05  Aligned_cols=170  Identities=15%  Similarity=0.089  Sum_probs=119.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++.   ...+ +
T Consensus         3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~-~   71 (251)
T PRK09544          3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIG-Y   71 (251)
T ss_pred             cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEE-E
Confidence            4689999999997632    6799999999999999999999999999999999985   777774 2221   1122 2


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      +.++......  ++  .....   ...+........+..+++.+++..  +..+..||+||+||++++.++..+++++|+
T Consensus        72 v~q~~~~~~~--l~--~~~~~---~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL  144 (251)
T PRK09544         72 VPQKLYLDTT--LP--LTVNR---FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL  144 (251)
T ss_pred             eccccccccc--cC--hhHHH---HHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4444321110  11  01111   111111122344566777776653  445678999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       145 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~  183 (251)
T PRK09544        145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL  183 (251)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            99999999987777766653        23677777653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=7.8e-24  Score=188.11  Aligned_cols=181  Identities=13%  Similarity=0.111  Sum_probs=123.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         6 ~~l~~~nl~~~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   80 (271)
T PRK13632          6 VMIKVENVSFSYPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE   80 (271)
T ss_pred             eEEEEEeEEEEcCCCC--ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence            4689999999996311  126799999999999999999999999999999999985   788874 3332110      


Q ss_pred             -CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225          149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       149 -p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                       .....++.++.. .+.  ..+..++........++........+.++++.+++.  .+..+..||+||+||+.++.++.
T Consensus        81 ~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  158 (271)
T PRK13632         81 IRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA  158 (271)
T ss_pred             HhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence             011223444431 111  134444433222222221111122345667766664  34566799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .+++++|+|||+..+|....+.+.+++.        ..|+++|+.+.
T Consensus       159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  205 (271)
T PRK13632        159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE  205 (271)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence            9999999999999999977777666664        23677777643

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=5.9e-24  Score=189.74  Aligned_cols=183  Identities=15%  Similarity=0.137  Sum_probs=122.9

Q ss_pred             ceEEeccchhhhhhhhc--ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C---
Q 024225           76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P---  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~--~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~---  148 (270)
                      ++++++|+++.|++...  ...+|+++||+|++|++++|+|+||||||||+++|+|++.   |++|++ +++... .   
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence            56899999999974211  1237899999999999999999999999999999999985   777873 333211 0   


Q ss_pred             ----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       149 ----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                          .....+++++.. .+..  .+..++..+.....+...........++++.+++..  +..+..||+||+||+.++.
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar  157 (280)
T PRK13633         80 LWDIRNKAGMVFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG  157 (280)
T ss_pred             HHHHhhheEEEecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence                011222444421 1111  122222222112222221111233456666666543  4567799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++..+|+++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       158 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~  207 (280)
T PRK13633        158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE  207 (280)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence            9999999999999999999987777766665        22777777654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.3e-24  Score=209.15  Aligned_cols=186  Identities=15%  Similarity=0.128  Sum_probs=131.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------  147 (270)
                      .++++++||++.|+.......+++|+||++++||++||+||||||||||+++|+|++.   |++|++ +++...      
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~   86 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ   86 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence            4579999999999642222347899999999999999999999999999999999985   788874 332100      


Q ss_pred             ---------------CCCceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccC-----CCcCC
Q 024225          148 ---------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYA  206 (270)
Q Consensus       148 ---------------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~-----~~~~~  206 (270)
                                     ......++.++......+.+++.++..+.... .++........+.++++.+++.     .+.++
T Consensus        87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~  166 (623)
T PRK10261         87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP  166 (623)
T ss_pred             ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence                           01112335555311111224555555443322 2332222234556778888774     24577


Q ss_pred             CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       207 ~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ..||+||+||++++.++..++++||+|||+..||...++.+.++++.        .|+++|+.+.
T Consensus       167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~  231 (623)
T PRK10261        167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV  231 (623)
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence            89999999999999999999999999999999999877777776652        2888888744

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.90  E-value=8.3e-24  Score=185.86  Aligned_cols=181  Identities=14%  Similarity=0.132  Sum_probs=121.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-----C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-----K--  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-----~--  147 (270)
                      ++++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++..     .  
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ   74 (253)
T ss_pred             ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence            3689999999997633    6799999999999999999999999999999999985   788874 33311     0  


Q ss_pred             -CC--------CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCC---CcCCCCCCcccC
Q 024225          148 -PP--------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG  214 (270)
Q Consensus       148 -~p--------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~  214 (270)
                       .+        ....++.++........++..++........+. ..........++++.+++..   +..+..+|+||+
T Consensus        75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~  154 (253)
T TIGR02323        75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ  154 (253)
T ss_pred             CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence             00        012224444321111111222222111111111 11111234556777777642   345678999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ||++++.++..+++++|+|||+..+|+...+.+.+++.        ..|+++|+.+.
T Consensus       155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~  211 (253)
T TIGR02323       155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV  211 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999999999999999999999999988877766554        22778877643

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.90  E-value=3.2e-24  Score=177.27  Aligned_cols=144  Identities=15%  Similarity=0.066  Sum_probs=108.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++++++.|++. +  .+++++||++++|++++|+||||||||||+++|+|++                +|+.|. +.+
T Consensus         1 i~~~~~~~~~~~~-~--~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~G~-i~~   60 (166)
T cd03223           1 IELENLSLATPDG-R--VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW----------------PWGSGR-IGM   60 (166)
T ss_pred             CEEEEEEEEcCCC-C--eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCCce-EEE
Confidence            3678999999642 1  2679999999999999999999999999999999998                566666 444


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      ++.                 ...++ ++..... ..++.+++...   ....+|+|++||++++.++..+++++|+|||+
T Consensus        61 ~~~-----------------~~i~~~~q~~~~~-~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          61 PEG-----------------EDLLFLPQRPYLP-LGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             CCC-----------------ceEEEECCCCccc-cccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            442                 01111 1111111 12555565543   45789999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          237 LFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      ..+|...++.+.+++..    .|+++|+.+
T Consensus       120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~  149 (166)
T cd03223         120 SALDEESEDRLYQLLKELGITVISVGHRPS  149 (166)
T ss_pred             cccCHHHHHHHHHHHHHhCCEEEEEeCChh
Confidence            99999888888887764    477777754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=8.9e-24  Score=187.50  Aligned_cols=182  Identities=13%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----  149 (270)
                      ++++++|+++.|++..  ..+++|+||++++||+++|+||||||||||+++|+|++.   |++|++ +++.....     
T Consensus         6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~   80 (269)
T PRK13648          6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK   80 (269)
T ss_pred             ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence            4689999999997521  226799999999999999999999999999999999984   667763 33321100     


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ....++.++...... ..+..++........+.........+..+++.+++..  +..+..+|+|++||++++.++..
T Consensus        81 ~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  159 (269)
T PRK13648         81 LRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL  159 (269)
T ss_pred             HHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence              011223433210000 0111122211111122211111223456667666543  45667999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +++++|+|||+..+|....+.+.+++.        ..|+++|+.+.
T Consensus       160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~  205 (269)
T PRK13648        160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE  205 (269)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence            999999999999999977776666554        22677777654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.90  E-value=7.9e-24  Score=179.51  Aligned_cols=172  Identities=17%  Similarity=0.111  Sum_probs=118.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---D  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---~  150 (270)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   .   .
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (198)
T TIGR01189         1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR   73 (198)
T ss_pred             CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence            36789999997633    6799999999999999999999999999999999985   777773 3332110   0   1


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ...++..+.. + ...++..++........+    .......+.++.+++..  +..+..+|+|++||++++.++..+++
T Consensus        74 ~i~~~~q~~~-~-~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  147 (198)
T TIGR01189        74 NILYLGHLPG-L-KPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP  147 (198)
T ss_pred             heEEeccCcc-c-ccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            1112332221 1 111334333332222111    11234556677666643  45667899999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ++|+|||+..+|...++.+.+++..       .|+++|+.+
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL  188 (198)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence            9999999999999877777777652       367777664

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.90  E-value=3.8e-24  Score=178.95  Aligned_cols=150  Identities=20%  Similarity=0.201  Sum_probs=113.4

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecC
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD  158 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~d  158 (270)
                      +++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++                +|+.|. |.++
T Consensus         1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~----------------~~~~G~-v~~~   59 (180)
T cd03214           1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL----------------KPSSGE-ILLD   59 (180)
T ss_pred             CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCcE-EEEC
Confidence            3678999997622    679999999999999999999999999999999998                778888 7788


Q ss_pred             CCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       159 g~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      |..+..  .+    ........++..        ++++.+++..  +..+..+|+|++||++++.++..+++++|+|||+
T Consensus        60 g~~~~~--~~----~~~~~~~i~~~~--------q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  125 (180)
T cd03214          60 GKDLAS--LS----PKELARKIAYVP--------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT  125 (180)
T ss_pred             CEECCc--CC----HHHHHHHHhHHH--------HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            865432  11    111222333311        1555555443  3456789999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          237 LFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ..+|...++.+.+++.        ..|+++|+.+.
T Consensus       126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~  160 (180)
T cd03214         126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL  160 (180)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            9999977777766654        23677776653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.90  E-value=9e-24  Score=187.44  Aligned_cols=186  Identities=15%  Similarity=0.098  Sum_probs=122.2

Q ss_pred             cceEEeccchhhhhhh-----hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC
Q 024225           75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~-----~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~  148 (270)
                      |++++++||++.|++.     .....+++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++....
T Consensus         1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~   77 (268)
T PRK10419          1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA   77 (268)
T ss_pred             CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence            3578999999999731     001236799999999999999999999999999999999985   778873 3332110


Q ss_pred             ---C-------CceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccC
Q 024225          149 ---P-------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG  214 (270)
Q Consensus       149 ---p-------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~  214 (270)
                         +       ....++.++.........+..++....... .+.........+.++++.+++..   +..+..+|+|++
T Consensus        78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~  157 (268)
T PRK10419         78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL  157 (268)
T ss_pred             ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence               0       112234444311111112322222111111 11111112234566777776642   456678999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ||+.++.++..++++||+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~  214 (268)
T PRK10419        158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL  214 (268)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence            99999999999999999999999999976666666554        23777777643

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=8.9e-24  Score=186.58  Aligned_cols=183  Identities=11%  Similarity=0.048  Sum_probs=122.4

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCCC--
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVKP--  148 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~~--  148 (270)
                      ....++++|+++.|++..    +|+|+||++++|++++|+||||||||||+++|+|++.  -..|++|++ +++....  
T Consensus        10 ~~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~   85 (260)
T PRK10744         10 APSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP   85 (260)
T ss_pred             CCceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence            345799999999997532    6799999999999999999999999999999999973  001367773 3331110  


Q ss_pred             -------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccC
Q 024225          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (270)
Q Consensus       149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~  214 (270)
                             .....++.++.. +..  .+..++........ +...........++++.+++.      .+..+..+|+||+
T Consensus        86 ~~~~~~~~~~i~~~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  162 (260)
T PRK10744         86 KQDIALLRAKVGMVFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ  162 (260)
T ss_pred             ccchHHHhcceEEEecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence                   011222444432 111  33333332221111 111111123345566666542      2445678999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ||+.++.++..+++++|+|||+..+|....+.+.+++..      .|+++|+.+.
T Consensus       163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~  217 (260)
T PRK10744        163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ  217 (260)
T ss_pred             HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            999999999999999999999999999887777777752      3677777643

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.90  E-value=1.8e-23  Score=183.96  Aligned_cols=177  Identities=13%  Similarity=0.112  Sum_probs=120.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCccc-CCCCCCC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASS-FDSQVKP---  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~----~~G~~-~~~~~~~---  148 (270)
                      .++++||++.| +..    +++++||++++|++++|+|+||||||||+++|+|++.   |    ++|++ +++....   
T Consensus         4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~   75 (254)
T PRK10418          4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA   75 (254)
T ss_pred             EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence            58999999999 322    6799999999999999999999999999999999985   6    78874 3332111   


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcccCChhhhhh
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~~rv~~~~  221 (270)
                        .....++.++....+.+..+..++........+..  .....+.++++.+.+..     +..+..+|+|++||+.++.
T Consensus        76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar  153 (254)
T PRK10418         76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL  153 (254)
T ss_pred             cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence              11122355543211111122222221111122321  12245567777777654     4566799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++..++++||+|||+..+|....+.+.+++.        ..|+++|+.+.
T Consensus       154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~  203 (254)
T PRK10418        154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV  203 (254)
T ss_pred             HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence            9999999999999999999977666666554        12677776643

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.90  E-value=6.2e-24  Score=185.06  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=109.9

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C----CceEEeecCCCCccccccC
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P----DVATVLPMDGFHLYLSQLD  168 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p----~~g~~i~~dg~~~~~~~l~  168 (270)
                      +|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++... . +    ....++..+...+. ..++
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~t  111 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW-WDLP  111 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccC-CCCc
Confidence            7899999999999999999999999999999999985   888884 333211 0 0    01111221211111 1234


Q ss_pred             cccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHH
Q 024225          169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD  246 (270)
Q Consensus       169 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~  246 (270)
                      ..++........+............+++.+++..  +..+..+|+||+||+.++.++..+++++|+|||+..+|...++.
T Consensus       112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  191 (236)
T cd03267         112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN  191 (236)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            4333333222223221111223445666655543  45567899999999999999999999999999999999988888


Q ss_pred             HHHhhcc--------ceEEecccc
Q 024225          247 VSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       247 l~~~~~~--------~i~v~~~~~  262 (270)
                      +.+++..        .|+++|+.+
T Consensus       192 l~~~l~~~~~~~~~tiiivsH~~~  215 (236)
T cd03267         192 IRNFLKEYNRERGTTVLLTSHYMK  215 (236)
T ss_pred             HHHHHHHHHhcCCCEEEEEecCHH
Confidence            8877652        267777764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=8.9e-24  Score=188.80  Aligned_cols=180  Identities=14%  Similarity=0.140  Sum_probs=123.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ccc-CCCCCCC----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASS-FDSQVKP----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~---G~~-~~~~~~~----  148 (270)
                      +++++|+++.|++..  ..+++++||++++|+++||+||||||||||+++|+|++.   |+.   |++ +++....    
T Consensus         5 ~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~   79 (282)
T PRK13640          5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV   79 (282)
T ss_pred             eEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence            589999999996522  226799999999999999999999999999999999985   665   663 3332111    


Q ss_pred             ----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                          ...| +++++..... ...++.++..+.....+.........+.++++.+++..  +..+..+|+||+||+.++.+
T Consensus        80 ~~~~~~ig-~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara  157 (282)
T PRK13640         80 WDIREKVG-IVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI  157 (282)
T ss_pred             HHHHhheE-EEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence                1122 2454432111 11344444433222233211111233456677666653  55677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +..++++||+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  206 (282)
T PRK13640        158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE  206 (282)
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            999999999999999999987777766664        22677777643

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=191.43  Aligned_cols=182  Identities=14%  Similarity=0.065  Sum_probs=124.3

Q ss_pred             ceEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C----
Q 024225           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~----  148 (270)
                      ++++++||++.|+.... ...+|+|+||+|++|+++||+|+||||||||+++|+|++.   |++|++ +++... .    
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~~   96 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKNN   96 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccccc
Confidence            57999999999974211 1237899999999999999999999999999999999995   788874 332100 0    


Q ss_pred             ------------------CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCC
Q 024225          149 ------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYA  206 (270)
Q Consensus       149 ------------------p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~  206 (270)
                                        .....++.++.. .+..  .++.++..+.....+...........++++.+++.   ....+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  174 (320)
T PRK13631         97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP  174 (320)
T ss_pred             ccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence                              011223455431 1211  23333332221122221111123345667777664   24556


Q ss_pred             CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       207 ~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ..+|+||+||++++.++..++++||+|||+..+|....+.+.+++.       ..|+++|+.+
T Consensus       175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~  237 (320)
T PRK13631        175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME  237 (320)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence            7999999999999999999999999999999999988877777764       2377778775

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=185.08  Aligned_cols=179  Identities=13%  Similarity=0.120  Sum_probs=122.5

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCCC
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVKP  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~~  148 (270)
                      .++++++|+++.|++..    +++|+||++++||+++|+|+||||||||+++|+|++.   |     ++|++ +++....
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence            34799999999997532    6799999999999999999999999999999999984   4     46773 3332110


Q ss_pred             ---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhcc------CCCcCCCCCCcc
Q 024225          149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHG  212 (270)
Q Consensus       149 ---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~~S~g  212 (270)
                               .....++.++... +.  .++.++..+.....+.... .......+.++.+..      ..+..+..+|+|
T Consensus        78 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  154 (254)
T PRK14273         78 SNNFDILELRRKIGMVFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG  154 (254)
T ss_pred             cccccHHHHhhceEEEeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence                     1112234544322 11  4554444332222221100 111233455555543      134566799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+||+++++++..+++++|+|||+..+|....+.+.+++..      .|+++|+.+.
T Consensus       155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~  211 (254)
T PRK14273        155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ  211 (254)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999999999999999999999999999887777777752      3677777754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.90  E-value=7.2e-24  Score=184.93  Aligned_cols=179  Identities=18%  Similarity=0.113  Sum_probs=118.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----  149 (270)
                      ++++||++.|++..    +|+|+||++++|++++|+||||||||||+++|+|++. ..|++|++ +++....   +    
T Consensus         1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~~   75 (243)
T TIGR01978         1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELEPDERA   75 (243)
T ss_pred             CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCcceEEECCEecCCCCHHHhh
Confidence            46789999997532    6799999999999999999999999999999999841 12788874 3332110   0    


Q ss_pred             Cc-eEEeecCCCCccccccCcccChHHHHHhc-CCCC--Ccc----HHHHHHHHHhhccCC---CcCCC-CCCcccCChh
Q 024225          150 DV-ATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPW--TFN----PLLLLNCLKNLRNQG---SVYAP-SFDHGVGDPV  217 (270)
Q Consensus       150 ~~-g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~--~~~----~~~~~~~l~~l~~~~---~~~~~-~~S~g~~~rv  217 (270)
                      .. ..++.++....  ..++..++........ +...  ..+    ...+.++++.+++..   +..+. .+|+||+||+
T Consensus        76 ~~~i~~v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl  153 (243)
T TIGR01978        76 RAGLFLAFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN  153 (243)
T ss_pred             ccceEeeecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence            11 12233333211  1133333332221111 1100  011    233456677776642   33444 4999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      .++.++..+++++|+|||+..+|...++.+.+++..       .|+++|+.+.
T Consensus       154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~  206 (243)
T TIGR01978       154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL  206 (243)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence            999999999999999999999999888777777652       3677777653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.90  E-value=1.7e-23  Score=200.36  Aligned_cols=174  Identities=10%  Similarity=-0.006  Sum_probs=116.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------  149 (270)
                      +++++||++.|++..    +|+++||++++|+++||+||||||||||+|+|+|++.   |++|++ +++.....      
T Consensus         3 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~~   75 (490)
T PRK10938          3 SLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQL   75 (490)
T ss_pred             eEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHHH
Confidence            689999999997633    6799999999999999999999999999999999984   666663 22211000      


Q ss_pred             --CceEEeecCCCCccccccCcccC--hHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMED--PKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                        ..+. +.++... ..  ++...+  ........... ......+.++++.+++..  +..+..||+||+||++++.++
T Consensus        76 ~~~i~~-~~q~~~~-~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  150 (490)
T PRK10938         76 QKLVSD-EWQRNNT-DM--LSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL  150 (490)
T ss_pred             HHHhce-eccCcch-hh--cccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence              0111 2222110 00  000000  00000000000 011234556777776643  566779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ..+++++|+|||+..||+...+.+.+++..       .|+++|+.+
T Consensus       151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~  196 (490)
T PRK10938        151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD  196 (490)
T ss_pred             HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            999999999999999999888777777763       267777764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7.6e-24  Score=188.02  Aligned_cols=179  Identities=15%  Similarity=0.104  Sum_probs=119.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK-----  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~-----  147 (270)
                      .+++++||++.|++..    +|+|+||+|++|++++|+||||||||||+++|+|++..  .+|++|++ +++...     
T Consensus        12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259         12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            4699999999997633    67999999999999999999999999999999999731  01467763 333211     


Q ss_pred             CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225          148 PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       148 ~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv  217 (270)
                      .+    ....++.++.. ++.  .++.++........++. ........++++.+...      .+..+..||+||+||+
T Consensus        88 ~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl  163 (269)
T PRK14259         88 DPVEVRRRIGMVFQQPN-PFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL  163 (269)
T ss_pred             CHHHHhhceEEEccCCc-cch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence            00    11222443332 111  13333332221111211 11112334455555432      2445678999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +++.++..+++++|+|||+..+|....+.+.+++..      .|+++|+.+
T Consensus       164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~  214 (269)
T PRK14259        164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ  214 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999999999999999999887777777752      377777764

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=8.8e-24  Score=188.17  Aligned_cols=179  Identities=15%  Similarity=0.116  Sum_probs=123.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P----  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p----  149 (270)
                      +++++||++.|++.   ..+++++||+|++||++||+||||||||||+++|+|++.   |++|++ +++....  +    
T Consensus         1 ~l~~~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (275)
T PRK13639          1 ILETRDLKYSYPDG---TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL   74 (275)
T ss_pred             CEEEEEEEEEeCCC---CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence            37889999999631   126799999999999999999999999999999999985   778874 3332110  0    


Q ss_pred             ---CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225          150 ---DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ---~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ....+++++.. .+..  .++.++..+.....+...........++++.+++.  .+..+..+|+||+||++++.++
T Consensus        75 ~~~~~i~~v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral  152 (275)
T PRK13639         75 EVRKTVGIVFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL  152 (275)
T ss_pred             HHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence               11223555531 1111  34444443222222221111123455667776664  3456679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ..+++++|+|||+..+|...+..+.+++.       ..++++|+.+.
T Consensus       153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~  199 (275)
T PRK13639        153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL  199 (275)
T ss_pred             hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            99999999999999999987777766665       23777777654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.89  E-value=4.5e-24  Score=181.44  Aligned_cols=158  Identities=16%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.              ..|+.|. +.+
T Consensus         1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--------------~~p~~G~-i~~   61 (200)
T cd03217           1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK--------------YEVTEGE-ILF   61 (200)
T ss_pred             CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc--------------CCCCccE-EEE
Confidence            36789999997532    7799999999999999999999999999999999941              0577787 778


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      +|..+..  ..   .....+...++ ++........++.+++    ......+|+||+||+.++.++..+++++|+|||+
T Consensus        62 ~g~~~~~--~~---~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt  132 (200)
T cd03217          62 KGEDITD--LP---PEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD  132 (200)
T ss_pred             CCEECCc--CC---HHHHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            8865432  11   00111122333 3322111112333333    1222489999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          237 LFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       237 ~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ..+|...++.+.+++.       ..|+++|+.+.
T Consensus       133 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~  166 (200)
T cd03217         133 SGLDIDALRLVAEVINKLREEGKSVLIITHYQRL  166 (200)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            9999977766666654       23777777653

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.89  E-value=7.7e-24  Score=186.03  Aligned_cols=177  Identities=15%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------  148 (270)
                      ++++||++.|++..    +++|+||++++||+++|+||||||||||+++|+|++.   |++|++ +++....        
T Consensus         1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (252)
T TIGR03005         1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP   73 (252)
T ss_pred             CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            36789999997532    6799999999999999999999999999999999985   778873 3332110        


Q ss_pred             ------------CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCccc
Q 024225          149 ------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV  213 (270)
Q Consensus       149 ------------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~  213 (270)
                                  .....++..+....  +..+..++...... ..+...........++++.+++..  +..+..+|+|+
T Consensus        74 ~~~~~~~~~~~~~~~i~~v~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~  151 (252)
T TIGR03005        74 LVPADEKHLRQMRNKIGMVFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ  151 (252)
T ss_pred             ccccchhHHHHHhhCeEEEecCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence                        01122244433221  11344333332111 112211111223456666666543  34556899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +||++++.++..+++++|+|||+..+|...+..+.+++.        ..|+++|+.+.
T Consensus       152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~  209 (252)
T TIGR03005       152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF  209 (252)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            999999999999999999999999999977776666554        23778887654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2e-23  Score=184.93  Aligned_cols=179  Identities=16%  Similarity=0.071  Sum_probs=121.3

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      .++++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+ 
T Consensus         9 ~~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   81 (265)
T PRK10575          9 DTTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK   81 (265)
T ss_pred             CceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence            35799999999997532    6799999999999999999999999999999999985   788874 333211   00 


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHH-hcC---CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRG---APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g---~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~  220 (270)
                         ....++.++....  +.++..++...... ..+   ...........++++.+++..  +..+..+|+||+||++++
T Consensus        82 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  159 (265)
T PRK10575         82 AFARKVAYLPQQLPAA--EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA  159 (265)
T ss_pred             HHhhheEEeccCCCCC--CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence               1122244432211  11333332221100 001   011111234456677766643  456679999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      .++..+++++|+|||+..+|....+.+.+++.        ..|+++|+.+
T Consensus       160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~  209 (265)
T PRK10575        160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN  209 (265)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999987776666664        1267777764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.89  E-value=7.8e-24  Score=208.50  Aligned_cols=161  Identities=15%  Similarity=0.053  Sum_probs=120.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ..++++||++.|+...  ..+|+|+|++|++||+|||+|+||||||||+|+|.|++                .|..|. |
T Consensus       470 g~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly----------------~p~~G~-I  530 (709)
T COG2274         470 GEIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY----------------KPQQGR-I  530 (709)
T ss_pred             ceEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCCce-E
Confidence            3589999999998753  24679999999999999999999999999999999999                677777 8


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----------------------------CCc---
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------GSV---  204 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----------------------------~~~---  204 (270)
                      .+||+++..-      +....++..|+..+...-...++.+|+.++                            -+.   
T Consensus       531 ~~dg~dl~~i------~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~  604 (709)
T COG2274         531 LLDGVDLNDI------DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG  604 (709)
T ss_pred             EECCEeHHhc------CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence            8888776542      222355555553332222223444444332                            111   


Q ss_pred             -CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          205 -YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       205 -~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                       ....+||||+||+++++++..+|++||+||++..+|+...+.+.+-+.      ..|+|+|..
T Consensus       605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl  668 (709)
T COG2274         605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL  668 (709)
T ss_pred             cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence             123689999999999999999999999999999999976666665554      557888876

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.89  E-value=4e-24  Score=180.99  Aligned_cols=160  Identities=15%  Similarity=0.096  Sum_probs=114.4

Q ss_pred             eEEeccchhhhhhhh--cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~--~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      .+++++|++.|++..  ....+++++||++++|++++|+||||||||||+++|+|++.              .+|..|. 
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~--------------~~~~~G~-   67 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT--------------GLGVSGE-   67 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------------CCCCceE-
Confidence            478999999997520  01227799999999999999999999999999999999971              0356677 


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      +.++|..+..         ...+...++ ++........++.+++......  ..+|+|++||+.++.++..+++++|+|
T Consensus        68 i~~~g~~~~~---------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~LS~G~~qrv~laral~~~p~illlD  136 (194)
T cd03213          68 VLINGRPLDK---------RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RGLSGGERKRVSIALELVSNPSLLFLD  136 (194)
T ss_pred             EEECCEeCch---------HhhhheEEEccCcccCCCCCcHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            6777764321         012223343 2222111113444444432211  189999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          234 GNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ||+..+|...++.+.+++..       .|+++|+.+
T Consensus       137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence            99999999888888777762       267777764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.89  E-value=1.4e-23  Score=176.89  Aligned_cols=163  Identities=17%  Similarity=0.133  Sum_probs=111.2

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----C-----CceEEeecCCC-Cccc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----P-----DVATVLPMDGF-HLYL  164 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p-----~~g~~i~~dg~-~~~~  164 (270)
                      +++++||++++|+++||+||||||||||+++|+|+++   |++|++ +++....    +     ....++.++.. .++.
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA   83 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence            6799999999999999999999999999999999985   788874 3332110    0     01222444431 1111


Q ss_pred             cccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225          165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (270)
Q Consensus       165 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~  242 (270)
                        .+..++........+.........+.++++.+++..  +..+..+|+|++||+.++.++..+++++|+|||+..+|..
T Consensus        84 --~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  161 (190)
T TIGR01166        84 --ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA  161 (190)
T ss_pred             --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence              244343332222222211111223456666666543  4566799999999999999999999999999999999998


Q ss_pred             hHHHHHHhhcc-------ceEEeccccc
Q 024225          243 VWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       243 ~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      .++.+.+++..       .|+++|+.+.
T Consensus       162 ~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       162 GREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            88888777762       2677777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.3e-23  Score=206.43  Aligned_cols=185  Identities=15%  Similarity=0.145  Sum_probs=132.4

Q ss_pred             ceEEeccchhhhhhhh-------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC
Q 024225           76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~-------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~  147 (270)
                      ++++++||++.|+...       ....+++++||+|++||++||+||||||||||+|+|+|+++   |++|++ +++...
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i  388 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRI  388 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence            5799999999996210       11347899999999999999999999999999999999985   889984 444211


Q ss_pred             -C---------CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccC---CCcCCCCCCccc
Q 024225          148 -P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (270)
Q Consensus       148 -~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~  213 (270)
                       .         .....+++++.+....+.+++.++........+.. .......+.++++.+++.   .+.++.+||+||
T Consensus       389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq  468 (623)
T PRK10261        389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ  468 (623)
T ss_pred             CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence             0         01233466665322222345544443322222321 111223456778887774   356778999999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +||++++.++..++++||+|||+..||...+..+.+++.        ..|+++||.+.
T Consensus       469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~  526 (623)
T PRK10261        469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV  526 (623)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999999999999988888888773        24888888754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.1e-23  Score=185.00  Aligned_cols=181  Identities=14%  Similarity=0.085  Sum_probs=121.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC---
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP---  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~---  148 (270)
                      .+.++++||++.|++..    +|+|+||+|++|++++|+||||||||||+++|+|++.-.  .|++|++ +++....   
T Consensus        17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence            34799999999997532    679999999999999999999999999999999998400  0267773 3332110   


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCC-C-CccHHHHHHHHHhhccCC------CcCCCCCCcccC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-W-TFNPLLLLNCLKNLRNQG------SVYAPSFDHGVG  214 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~-~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~  214 (270)
                            .....++.++.. +..  .++.++..+.....+.. . ......+..+++.+++..      +..+..+|+||+
T Consensus        93 ~~~~~~~~~i~~v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  169 (267)
T PRK14235         93 LDVVELRARVGMVFQKPN-PFP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ  169 (267)
T ss_pred             cchHHHhhceEEEecCCC-CCC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence                  011122444322 111  23333333222112221 1 111223455666666532      345678999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ||++++.++..++++||+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~  223 (267)
T PRK14235        170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ  223 (267)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence            999999999999999999999999999888777777752      366777654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2e-23  Score=185.08  Aligned_cols=184  Identities=14%  Similarity=0.069  Sum_probs=123.7

Q ss_pred             cCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC
Q 024225           72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP  148 (270)
Q Consensus        72 ~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~  148 (270)
                      +...++++++||++.|+...    +|+|+||++++||++||+||||||||||+++|+|++.-.  .|++|++ +++....
T Consensus        15 ~~~~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   90 (267)
T PRK14237         15 PEEEIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN   90 (267)
T ss_pred             CCCCeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence            44456799999999997532    679999999999999999999999999999999998300  1367873 3332110


Q ss_pred             ---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcc
Q 024225          149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (270)
Q Consensus       149 ---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g  212 (270)
                               .....++.++... +.  .++.++........+... ......+.++++.+.+.      .+..+..+|+|
T Consensus        91 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G  167 (267)
T PRK14237         91 RKEINVYEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG  167 (267)
T ss_pred             cccCChHHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence                     1112334444322 11  244444433222222211 11122344556665542      23456799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++||++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~  223 (267)
T PRK14237        168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQ  223 (267)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            99999999999999999999999999999877777776662      367777664

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.1e-23  Score=183.19  Aligned_cols=180  Identities=13%  Similarity=0.061  Sum_probs=121.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~----  148 (270)
                      ++++++|+++.|++..    +++++||++++||+++|+|+||||||||+++|+|++.-  ..+++|++ +++....    
T Consensus         3 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (251)
T PRK14270          3 IKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV   78 (251)
T ss_pred             cEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence            5789999999997532    67999999999999999999999999999999999740  00157773 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           .....++.++... +.  .+..++..+.....+.. .........++++.+++.      .+..+..+|+|++||
T Consensus        79 ~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  155 (251)
T PRK14270         79 DVVELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR  155 (251)
T ss_pred             cHHHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence                 1112335554432 21  34444443322222221 111112334556665542      244567999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++++.++..+++++|+|||+..+|...+..+.++++.      .|+++|+.+
T Consensus       156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~  207 (251)
T PRK14270        156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ  207 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH
Confidence            9999999999999999999999999877777776662      377777764

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.89  E-value=1.3e-23  Score=180.99  Aligned_cols=181  Identities=18%  Similarity=0.103  Sum_probs=122.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      +++++|+++.|+...+...+++++||++++|++++|+|+||||||||+++|+|++.   |++|++ +++....   +   
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL   77 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence            36789999999742112337799999999999999999999999999999999985   777773 3332110   0   


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                          ....+++.+... + ..++..++......... .........+.++++.+++..  +..+..+|+|++||+.++.+
T Consensus        78 ~~~~~~i~~~~q~~~~-~-~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara  155 (220)
T TIGR02982        78 VQLRRNIGYIFQAHNL-L-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA  155 (220)
T ss_pred             HHHHhheEEEcCChhh-c-CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence                112223333221 1 11344443332221111 111111234566777777653  34566899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      +..+++++|+|||+..+|....+.+.++++        ..|+++|+.+
T Consensus       156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~  203 (220)
T TIGR02982       156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR  203 (220)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            999999999999999999988766666664        2377777764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.5e-23  Score=182.80  Aligned_cols=182  Identities=11%  Similarity=0.069  Sum_probs=120.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~----  148 (270)
                      ..++++|+++.|++..    +++|+||+|++|+++||+|+||||||||+++|+|++..  ..|++|++ +++....    
T Consensus         3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            4589999999997532    67999999999999999999999999999999999720  00257773 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC------CcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~r  216 (270)
                           .....++.++...+.  .++..++........+.. .........+.++.+++..      ...+..+|+|++||
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  156 (252)
T PRK14256         79 DPVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR  156 (252)
T ss_pred             ChHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence                 011222444433211  134433332221112211 1111223455566665432      24566899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      ++++.++..+++++|+|||+..+|....+.+.++++      ..|+++|+.+.
T Consensus       157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~  209 (252)
T PRK14256        157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ  209 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence            999999999999999999999999987777776665      33777777643

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.89  E-value=2.1e-23  Score=180.61  Aligned_cols=171  Identities=20%  Similarity=0.205  Sum_probs=109.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------P  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------p  149 (270)
                      ++++|+++.|++.   ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....       .
T Consensus         3 l~~~~l~~~~~~~---~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (229)
T cd03254           3 IEFENVNFSYDEK---KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSLR   76 (229)
T ss_pred             EEEEEEEEecCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHHh
Confidence            6889999999742   126799999999999999999999999999999999984   666663 2221100       0


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------C----CCcCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~~S~g~~~r  216 (270)
                      ....++..+.. ++.  .+..++.     .+... ......+...++.+..         +    ....+..+|+||+||
T Consensus        77 ~~i~~~~q~~~-~~~--~tv~~~~-----~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r  147 (229)
T cd03254          77 SMIGVVLQDTF-LFS--GTIMENI-----RLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL  147 (229)
T ss_pred             hhEEEecCCch-hhh--hHHHHHH-----hccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence            01112232221 110  0111111     11111 1111222222222111         1    123456899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +.++.++..+++++|+|||+..||...++.+.+++..      .|+++|+.+.
T Consensus       148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  200 (229)
T cd03254         148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST  200 (229)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence            9999999999999999999999999888777776653      3677776643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.89  E-value=1.7e-23  Score=179.36  Aligned_cols=174  Identities=15%  Similarity=0.139  Sum_probs=118.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~  151 (270)
                      ++++||++.|+.      .+.++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....     ...
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP   71 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence            367899999963      3479999999999999999999999999999999985   888874 3332110     011


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++.++....  ..++..++....................++++.+++..  +..+..||+||+||++++.++..++++
T Consensus        72 i~~v~q~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  149 (213)
T TIGR01277        72 VSMLFQENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI  149 (213)
T ss_pred             eEEEeccCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            22344443211  12344443322111100011112234456677766643  445669999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      +|+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~  190 (213)
T TIGR01277       150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS  190 (213)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999999877777665542        267777764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.89  E-value=9.3e-24  Score=202.71  Aligned_cols=178  Identities=17%  Similarity=0.151  Sum_probs=124.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++|+++.|++..    +++|+||++++|+++||+||||||||||+|+|+|++.   |++|++ +++....      
T Consensus         3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   75 (501)
T PRK10762          3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS   75 (501)
T ss_pred             ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4689999999997632    6799999999999999999999999999999999985   888884 4432110      


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhc---CC-CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~---g~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~  220 (270)
                        .....++.++....  ..+++.++..+.....   +. ........+.++++.+++..  +..+..||+||+||++++
T Consensus        76 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  153 (501)
T PRK10762         76 SQEAGIGIIHQELNLI--PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA  153 (501)
T ss_pred             HHhCCEEEEEcchhcc--CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence              11122355543221  1244444332211111   10 00011234566777777654  455679999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      .++..+|++||+|||+..||+..++.+.+++..       .|+++|+.+
T Consensus       154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~  202 (501)
T PRK10762        154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK  202 (501)
T ss_pred             HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            999999999999999999999877777666652       377777764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.1e-23  Score=185.50  Aligned_cols=177  Identities=15%  Similarity=0.144  Sum_probs=120.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++|+++.|++..    +|+++||++++|++++|+|+||||||||+++|+|++.   |++|++ +++....       
T Consensus         2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231          2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence            488999999997532    6799999999999999999999999999999999985   788873 3332110       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHH-H---hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH-A---RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~---~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                      .....++.++....  ..++..++..... .   .++.....+...+..+++.+++..  +..+..+|+|++||+.++.+
T Consensus        75 ~~~i~~~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  152 (255)
T PRK11231         75 ARRLALLPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV  152 (255)
T ss_pred             hhheEEecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence            01122244443211  1133333222110 0   011111112233455666666543  55667999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~  199 (255)
T PRK11231        153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN  199 (255)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            999999999999999999988877777764       2267777764

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-23  Score=202.06  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=116.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      -.|+++||++.|+..+ .+.+|+|+||+|++||+|||+||||+||||++++|.+++                .|+.|. |
T Consensus       464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY----------------~PtsG~-I  525 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY----------------DPTSGR-I  525 (716)
T ss_pred             ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc----------------CCCCCe-E
Confidence            3599999999999854 366789999999999999999999999999999999999                788888 8


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc----------------------------cCCCc---
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR----------------------------NQGSV---  204 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~----------------------------~~~~~---  204 (270)
                      .+||.++.+.      +..++++.+|...|...-.-.++.|||.                            .|-+.   
T Consensus       526 llDG~~i~~~------~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG  599 (716)
T KOG0058|consen  526 LLDGVPISDI------NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVG  599 (716)
T ss_pred             EECCeehhhc------CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence            8888876541      2334455555432221111123333333                            22221   


Q ss_pred             -CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          205 -YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       205 -~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                       +.-++|||||||+++++++..+|+|||+||.+..||.+.-..+++.++
T Consensus       600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~  648 (716)
T KOG0058|consen  600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD  648 (716)
T ss_pred             CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHH
Confidence             223889999999999999999999999999999999987777777776

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.9e-23  Score=183.21  Aligned_cols=180  Identities=14%  Similarity=0.132  Sum_probs=119.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~--~~~G~~-~~~~~~~----  148 (270)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++..+.  +++|++ +++....    
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~   77 (250)
T PRK14262          2 PIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL   77 (250)
T ss_pred             ceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence            4689999999997532    6799999999999999999999999999999999973100  267773 3331110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           .....++.++... +.  .+..++........+.. .........+.++.++..      .+..+..+|+||+||
T Consensus        78 ~~~~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  154 (250)
T PRK14262         78 DVTEYRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQR  154 (250)
T ss_pred             hHHHhhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence                 1122334444322 11  34433333222112211 111112234455555543      234567899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~  206 (250)
T PRK14262        155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG  206 (250)
T ss_pred             HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence            9999999999999999999999999888777777652      367777765

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.89  E-value=1.2e-23  Score=177.57  Aligned_cols=160  Identities=46%  Similarity=0.766  Sum_probs=143.9

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      -+..+.+|++|+.|+||||++.++...    ||.....++.....  ...+++||||++++..++.+++++..++++|.+
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~~f~~e~i~--iaiivPMDGFHlsr~~LD~f~dP~~AharRGap  189 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVNKFAQESIN--IAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP  189 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhh----cchhhhhhhhhhcc--eeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence            456799999999999999999988875    67765555544333  456799999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHhhc--cCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccc
Q 024225          184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFK  261 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~--~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~  261 (270)
                      |+||...++++++.++  ...+++.|.|+|+.++.+...+.+....+|+|+||.++++|++.|+.+-++++.+||++++.
T Consensus       190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~  269 (323)
T KOG2702|consen  190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDY  269 (323)
T ss_pred             cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccH
Confidence            9999999999999888  56789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhccC
Q 024225          262 ETYFNREA  269 (270)
Q Consensus       262 ~~~~~r~~  269 (270)
                      +++..|.+
T Consensus       270 ~~a~~RVa  277 (323)
T KOG2702|consen  270 EAAEERVA  277 (323)
T ss_pred             HHHHHHHH
Confidence            99988864

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.2e-23  Score=186.59  Aligned_cols=179  Identities=13%  Similarity=0.097  Sum_probs=121.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK-----  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~-----  147 (270)
                      +++++++|++.|++..    +|+++||+|++|++++|+||||||||||+++|+|++.-.  .|++|++ +++...     
T Consensus        38 ~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~  113 (285)
T PRK14254         38 TVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV  113 (285)
T ss_pred             ceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            4699999999997632    679999999999999999999999999999999998310  0367773 333111     


Q ss_pred             C----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225          148 P----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       148 ~----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv  217 (270)
                      .    .....++.++... +.  .++.++........+... .....+.++++.+++.      .+..+..||+||+||+
T Consensus       114 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv  189 (285)
T PRK14254        114 DPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL  189 (285)
T ss_pred             chHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH
Confidence            0    0112234444321 11  133333332222222221 1123345566666543      2455679999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +++.++..++++||+|||+..+|....+.+.+++..      .|+++|+.+
T Consensus       190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~  240 (285)
T PRK14254        190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQ  240 (285)
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999999999999999999877777777652      367777764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=2.6e-23  Score=175.96  Aligned_cols=170  Identities=12%  Similarity=0.057  Sum_probs=113.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-CC--CceE
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-PP--DVAT  153 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~p--~~g~  153 (270)
                      ++++|+++.|+..     .+.++||++++|++++|+|+||||||||+++|+|++.   |++|++ +++... ..  ....
T Consensus         2 l~~~~l~~~~~~~-----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (195)
T PRK13541          2 LSLHQLQFNIEQK-----NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYCT   73 (195)
T ss_pred             eEEEEeeEEECCc-----EEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhEE
Confidence            6789999999652     2234999999999999999999999999999999984   677763 333211 00  0111


Q ss_pred             EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      ++..+....  ...+..++........+     ......++++.++...  +.....+|+|++||+.++.++..+++++|
T Consensus        74 ~~~~~~~~~--~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ll  146 (195)
T PRK13541         74 YIGHNLGLK--LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWL  146 (195)
T ss_pred             eccCCcCCC--ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            122221111  11333333322111111     1234455556655542  44567899999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +|||+..+|....+.+.+++..       .|.++|+.+
T Consensus       147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  184 (195)
T PRK13541        147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES  184 (195)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            9999999999888888777641       256666653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.2e-23  Score=187.19  Aligned_cols=184  Identities=15%  Similarity=0.096  Sum_probs=118.9

Q ss_pred             ccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC
Q 024225           71 QQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK  147 (270)
Q Consensus        71 ~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~  147 (270)
                      .+...++++++||++.|++..    +|+++||++++||+++|+||||||||||+++|+|++.-.  .+++|++ +++...
T Consensus        14 ~~~~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l   89 (274)
T PRK14265         14 INPDHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI   89 (274)
T ss_pred             cCCCCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence            444556899999999998632    679999999999999999999999999999999997300  0146663 333111


Q ss_pred             -----CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcc
Q 024225          148 -----PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (270)
Q Consensus       148 -----~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g  212 (270)
                           .+    ....++.++... +.  .+..++........+... .......+.++.+...      .+..+..+|+|
T Consensus        90 ~~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  165 (274)
T PRK14265         90 YDSQINSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG  165 (274)
T ss_pred             ccccchhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence                 00    111223333221 11  122222221111111100 0112223344443331      23456689999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++||+.++.++..++++||+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~  221 (274)
T PRK14265        166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQ  221 (274)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999999888888887763      367777664

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.89  E-value=1.5e-23  Score=179.31  Aligned_cols=175  Identities=15%  Similarity=0.137  Sum_probs=118.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~  151 (270)
                      ++++|+++.|++..      .++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+  ..
T Consensus         1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~   71 (211)
T cd03298           1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP   71 (211)
T ss_pred             CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence            36789999997521      39999999999999999999999999999999985   888884 333211   00  11


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++.++.....  .++..++..................+.++++.+++..  +..+..||+||+||+.++.++..++++
T Consensus        72 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l  149 (211)
T cd03298          72 VSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV  149 (211)
T ss_pred             EEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            233555543211  1333333322111000001112234556677766643  455679999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  191 (211)
T cd03298         150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED  191 (211)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            99999999999988777777664        22677776643

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.89  E-value=1.8e-23  Score=180.42  Aligned_cols=173  Identities=18%  Similarity=0.185  Sum_probs=121.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CCceE
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PDVAT  153 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~~g~  153 (270)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   .....
T Consensus         1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG   73 (223)
T ss_pred             CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence            36789999997532    6799999999999999999999999999999999985   888874 3332111   11122


Q ss_pred             EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      ++..+....  ..++..++........+    .+.....++++.+++..  +..+..+|+|++||+.++.++..++++++
T Consensus        74 ~~~q~~~~~--~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll  147 (223)
T TIGR03740        74 SLIESPPLY--ENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI  147 (223)
T ss_pred             EEcCCCCcc--ccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            233333211  11344444332222222    12345567777777653  44566899999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~  186 (223)
T TIGR03740       148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE  186 (223)
T ss_pred             ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            999999999987777777665       23677777643

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=6.7e-23  Score=165.23  Aligned_cols=178  Identities=18%  Similarity=0.179  Sum_probs=126.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc--cCCCC----CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQ----VK---  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~--~~~~~----~~---  147 (270)
                      .++++++.+.||...    +|-||+|+.+.||.+.++||||+|||||+|.|.-+--   |.+|+  +-+++    ..   
T Consensus         2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~   74 (242)
T COG4161           2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence            378999999999866    8899999999999999999999999999999987763   55665  11111    00   


Q ss_pred             ------CCCceEEeecCCCCccccccCcccCh-HHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhh
Q 024225          148 ------PPDVATVLPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (270)
Q Consensus       148 ------~p~~g~~i~~dg~~~~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~  218 (270)
                            +.+.|. ++ ..|+++ +++++.++. +...+..|+..........++++.+.+.  .+.++-.+|||+.||++
T Consensus        75 k~i~~lr~~vgm-vf-qqy~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva  151 (242)
T COG4161          75 KAIRDLRRNVGM-VF-QQYNLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA  151 (242)
T ss_pred             HHHHHHHHhhhh-hh-hhhccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence                  011222 11 123332 224443332 2223345554444444555666666654  46777799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc-------eEEeccccch
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-------CYATSFKETY  264 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~-------i~v~~~~~~~  264 (270)
                      +++++.+++++++.|||+..+|++...++.+++++.       +.|+|..+++
T Consensus       152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va  204 (242)
T COG4161         152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA  204 (242)
T ss_pred             HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH
Confidence            999999999999999999999999999999999843       6677766544

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.6e-23  Score=184.20  Aligned_cols=179  Identities=15%  Similarity=0.110  Sum_probs=121.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P---  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p---  149 (270)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|++ +++... . +   
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   76 (255)
T PRK11300          4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ   76 (255)
T ss_pred             ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence            3689999999997532    7799999999999999999999999999999999985   888883 333211 0 0   


Q ss_pred             --Cc-eEEeecCCCCccccccCcccChHHHHHh-------cCCCC------C--ccHHHHHHHHHhhccCC--CcCCCCC
Q 024225          150 --DV-ATVLPMDGFHLYLSQLDAMEDPKEAHAR-------RGAPW------T--FNPLLLLNCLKNLRNQG--SVYAPSF  209 (270)
Q Consensus       150 --~~-g~~i~~dg~~~~~~~l~~~~~~~~~~~~-------~g~~~------~--~~~~~~~~~l~~l~~~~--~~~~~~~  209 (270)
                        .. ..++.++....  +.++..++.......       .++..      .  .......+.++.+++..  +..+..+
T Consensus        77 ~~~~~i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  154 (255)
T PRK11300         77 IARMGVVRTFQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL  154 (255)
T ss_pred             HHhcCeEEeccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence              01 11234433211  123443333221110       01100      0  01123445566666543  4566799


Q ss_pred             CcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       210 S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |+||+||+.++.++..+|+++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~  216 (255)
T PRK11300        155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL  216 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence            9999999999999999999999999999999987777777664        23677777643

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.6e-23  Score=182.46  Aligned_cols=181  Identities=16%  Similarity=0.102  Sum_probs=121.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCCC---C
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVKP---P  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~~---p  149 (270)
                      ++++++|+++.|+...    +++++||++++|+++||+||||||||||+++|+|+.....+  ++|++ +++....   +
T Consensus         2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14245          2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV   77 (250)
T ss_pred             cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence            4689999999997632    67999999999999999999999999999999997321113  46773 3332110   0


Q ss_pred             ------CceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccCC------CcCCCCCCcccCCh
Q 024225          150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~r  216 (270)
                            ....+++++... ..  .+..++........+... ........++++.+++..      ...+..+|+||+||
T Consensus        78 ~~~~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  154 (250)
T PRK14245         78 QVDELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR  154 (250)
T ss_pred             cHHHHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence                  112334444322 11  244343332222222211 111223455666665531      34456899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ++++.++..+++++|+|||+..+|...++.+.++++.      .|+++|+.+.
T Consensus       155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~  207 (250)
T PRK14245        155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQ  207 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            9999999999999999999999999888888777762      3777777643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.5e-23  Score=201.53  Aligned_cols=178  Identities=16%  Similarity=0.150  Sum_probs=123.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~~----  148 (270)
                      ++++++||++.|++..    +++|+||++++|+++||+||||||||||+|+|+|++.   |  ++|++ +++....    
T Consensus         4 ~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~   76 (506)
T PRK13549          4 YLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI   76 (506)
T ss_pred             ceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence            4699999999997532    7799999999999999999999999999999999984   4  67774 3332110    


Q ss_pred             ----CCceEEeecCCCCccccccCcccChHHHHHhc--CC-CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhh
Q 024225          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (270)
Q Consensus       149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~  219 (270)
                          .....++.++....  ..+++.++..+.....  +. ........+.++++.+++..  +..+..||+||+||+++
T Consensus        77 ~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l  154 (506)
T PRK13549         77 RDTERAGIAIIHQELALV--KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI  154 (506)
T ss_pred             HHHHHCCeEEEEeccccC--CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence                01122355543211  1234444332211111  11 11111234566777777653  45667999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +.++..+++++|+|||+..||+..+..+.+++..       .|+++|+.+
T Consensus       155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~  204 (506)
T PRK13549        155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN  204 (506)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            9999999999999999999999888887777652       367777764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.5e-23  Score=187.90  Aligned_cols=182  Identities=12%  Similarity=0.024  Sum_probs=121.7

Q ss_pred             ceEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-----C
Q 024225           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----P  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-----~  148 (270)
                      ..++++||++.|++... ...+++|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++...     .
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   81 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK   81 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence            45899999999975310 1236799999999999999999999999999999999985   788874 333110     0


Q ss_pred             --C-----CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChh
Q 024225          149 --P-----DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       149 --p-----~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv  217 (270)
                        +     ....++.++.. .+..  .+..++..+.....+.........+.++++.+.+.   .+..+..+|+||+||+
T Consensus        82 ~~~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv  159 (289)
T PRK13645         82 IKEVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV  159 (289)
T ss_pred             cccHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence              0     11222444431 1111  23333333222222221111112344566666652   2456679999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      +++.++..++++||+|||+..+|....+.+.+++.        ..|+++|+.+
T Consensus       160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~  212 (289)
T PRK13645        160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD  212 (289)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            99999999999999999999999977777665544        2367777765

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.5e-24  Score=194.83  Aligned_cols=168  Identities=16%  Similarity=0.181  Sum_probs=118.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---------  147 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---------  147 (270)
                      +++ ||+|.|++.     . .|+||++++||+++|+||||||||||+++|+|++.   |++|++ +++...         
T Consensus         2 l~~-~l~k~~~~~-----~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~~   71 (352)
T PRK11144          2 LEL-NFKQQLGDL-----C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGICL   71 (352)
T ss_pred             eEE-EEEEEeCCE-----E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            566 999999762     1 38999999999999999999999999999999985   788873 333110         


Q ss_pred             CC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          148 PP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       148 ~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                      .+  ....++.++.. ++ +.+++.++..+     +.. ......+.++++.+++..  +..+..+|+||+||++++.++
T Consensus        72 ~~~~~~i~~v~q~~~-l~-~~~tv~enl~~-----~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL  143 (352)
T PRK11144         72 PPEKRRIGYVFQDAR-LF-PHYKVRGNLRY-----GMA-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL  143 (352)
T ss_pred             chhhCCEEEEcCCcc-cC-CCCcHHHHHHh-----hhh-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence            00  11222444432 11 22444443322     111 112345567777777653  456779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ..+++++|+|||+..+|...++.+.+.+.        ..|+++|+.+.
T Consensus       144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~  191 (352)
T PRK11144        144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE  191 (352)
T ss_pred             HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence            99999999999999999987776666654        24888888754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.89  E-value=3.1e-23  Score=199.52  Aligned_cols=175  Identities=18%  Similarity=0.154  Sum_probs=123.4

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-  149 (270)
                      .++++++||++.|++..    +|+|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++....   + 
T Consensus         9 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   81 (510)
T PRK15439          9 PPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPA   81 (510)
T ss_pred             CceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence            45799999999998633    6799999999999999999999999999999999985   777874 3332110   0 


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                          ....++.++.....  .+++.++..+     +.. .........++++.+++..  +..+..||+||+||++++.+
T Consensus        82 ~~~~~~i~~v~q~~~~~~--~~tv~e~l~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  154 (510)
T PRK15439         82 KAHQLGIYLVPQEPLLFP--NLSVKENILF-----GLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG  154 (510)
T ss_pred             HHHhCCEEEEeccCccCC--CCcHHHHhhc-----ccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence                11222444432111  1333222211     111 1111234566777777653  45667999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +..++++||+|||+..+|+...+.+.+++..       .|+++|+.+.
T Consensus       155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~  202 (510)
T PRK15439        155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE  202 (510)
T ss_pred             HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            9999999999999999999888777777652       3677777643

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.4e-23  Score=182.78  Aligned_cols=181  Identities=15%  Similarity=0.114  Sum_probs=121.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~----  148 (270)
                      ++++++|+++.|+...    +++++||++++||+++|+|+||||||||+++|+|++..  ..+++|++ +++....    
T Consensus         3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence            3689999999997532    67999999999999999999999999999999999730  00257773 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           .....++.++.. ++.  .++.++........+... ........++++.+.+.      .+..+..+|+||+||
T Consensus        79 ~~~~~~~~i~~~~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  155 (251)
T PRK14251         79 DLVELRKEVGMVFQQPT-PFP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR  155 (251)
T ss_pred             hHHHhhccEEEEecCCc-cCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence                 111222444432 221  344444433222222211 11112334555555542      234566899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~  208 (251)
T PRK14251        156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ  208 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            9999999999999999999999999888777777762      3677777643

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.8e-23  Score=196.37  Aligned_cols=181  Identities=15%  Similarity=0.135  Sum_probs=128.4

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-  149 (270)
                      .++++++|++|.|++..    +|+++||++.+||++||+|.||||||||+|+|+|.+.   |++|++ +++....   | 
T Consensus         6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~   78 (500)
T COG1129           6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR   78 (500)
T ss_pred             cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence            45799999999999854    9999999999999999999999999999999999995   777773 4443221   1 


Q ss_pred             ---Cce-EEeecCCCCccccccCcccChHHHHHh---cCCC-CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225          150 ---DVA-TVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (270)
Q Consensus       150 ---~~g-~~i~~dg~~~~~~~l~~~~~~~~~~~~---~g~~-~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~  219 (270)
                         ..| .+|+++---.  +++++.+|.-..+.-   +|+. +.........+++.++..  .+.....+|.+++|.+++
T Consensus        79 ~A~~~GI~~V~QEl~L~--p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI  156 (500)
T COG1129          79 DALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI  156 (500)
T ss_pred             HHHhCCcEEEeechhcc--CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence               111 2244443322  236665555332221   2221 111122334566666653  345566999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      +.++..++++||+|||+..|++.-.+.+.++++       -.|||+|..++-
T Consensus       157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei  208 (500)
T COG1129         157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEV  208 (500)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence            999999999999999999999866666666665       339999987553

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.89  E-value=2.4e-23  Score=201.04  Aligned_cols=185  Identities=15%  Similarity=0.171  Sum_probs=124.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCCC-
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVKP-  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~~-  148 (270)
                      ++++++||++.|+.......+++++||++++||++||+||||||||||+|+|+|++.   |     ++|++ +++.... 
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence            469999999999631111237799999999999999999999999999999999984   3     57773 3332110 


Q ss_pred             ----------CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcc
Q 024225          149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHG  212 (270)
Q Consensus       149 ----------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g  212 (270)
                                .....+++++......+.++..++...... ..+.........+.++++.+++..     +.++..+|+|
T Consensus        81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG  160 (529)
T PRK15134         81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG  160 (529)
T ss_pred             CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence                      011223555532101111222222211111 113222122344567777777743     4567799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      |+||++++.++..+|++||+|||+..||+...+.+.+++..        .|+++|+.+.
T Consensus       161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  219 (529)
T PRK15134        161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI  219 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence            99999999999999999999999999999887777766642        3788888754

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.4e-23  Score=181.63  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=119.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC-----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP-----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~-----  148 (270)
                      .++++||++.|++..    +++|+||++++||+++|+||||||||||+++|+|++.-.  .+++|++ +++....     
T Consensus         3 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          3 KISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             eEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            588999999997632    679999999999999999999999999999999986300  0157773 3332110     


Q ss_pred             ----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv  217 (270)
                          .....++..+.. +..  .+..++..+.....+... ........+.++.+...      .+..+..||+||+||+
T Consensus        79 ~~~~~~~i~~~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  155 (250)
T PRK14240         79 VNQLRKRVGMVFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL  155 (250)
T ss_pred             hHHHhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence                011222444322 111  344444433222222211 11122334455555432      2345678999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      +++.++..+++++|+|||+..+|....+.+.+++.      ..|+++|+.+
T Consensus       156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~  206 (250)
T PRK14240        156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ  206 (250)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence            99999999999999999999999987777776665      2367777764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=8.8e-24  Score=203.27  Aligned_cols=178  Identities=15%  Similarity=0.107  Sum_probs=123.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      ++++++|+++.|++..    +++|+||++++|+++||+||||||||||+|+|+|++.   |++|++ +++....   +  
T Consensus         4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   76 (510)
T PRK09700          4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL   76 (510)
T ss_pred             ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence            4699999999997633    6799999999999999999999999999999999985   788884 3332110   0  


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHH----hcCCC---CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPV  217 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~----~~g~~---~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv  217 (270)
                         ....++.++.....  .+++.++......    ..+..   .......+.++++.+++..  +..+..||+||+||+
T Consensus        77 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv  154 (510)
T PRK09700         77 AAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML  154 (510)
T ss_pred             HHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence               11223444432211  1333333221110    01110   0011234456777776653  456679999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      +++.++..++++||+|||+..||....+.+.+++..       .|+++|+.+
T Consensus       155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~  206 (510)
T PRK09700        155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA  206 (510)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            999999999999999999999999888887777652       377777764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.2e-23  Score=181.00  Aligned_cols=173  Identities=16%  Similarity=0.180  Sum_probs=117.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--Cc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--DV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--~~  151 (270)
                      ++++||++.|++.      ..++||++++|+++||+||||||||||+++|+|++.   |++|++ +++....   +  ..
T Consensus         2 l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (232)
T PRK10771          2 LKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRRP   72 (232)
T ss_pred             eEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhcc
Confidence            6889999999752      248999999999999999999999999999999985   888884 4442111   0  11


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ..++..+.....  .++..++...... .+.. ...+...+.++++.+++..  +..+..+|+||+||+.++.++..+++
T Consensus        73 i~~~~q~~~~~~--~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  149 (232)
T PRK10771         73 VSMLFQENNLFS--HLTVAQNIGLGLN-PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP  149 (232)
T ss_pred             EEEEeccccccc--CCcHHHHHhcccc-cccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            223444432211  1333332221110 0110 1112234566777776643  45667999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      ++|+|||+..+|...++.+.+++.        ..|+++|+.+
T Consensus       150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~  191 (232)
T PRK10771        150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE  191 (232)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            999999999999987766666554        2266677665

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.8e-23  Score=185.16  Aligned_cols=181  Identities=13%  Similarity=0.102  Sum_probs=124.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++||++.|++.. ...+++++||++++||+++|+|+||||||||+++|+|++.   |++|++ +++....       
T Consensus         4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~   79 (277)
T PRK13642          4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL   79 (277)
T ss_pred             eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence            689999999997421 2236799999999999999999999999999999999996   888884 4432111       


Q ss_pred             CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225          149 PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       149 p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      .....++.++.. .+..  .++.++..+.....+............+++.+++.  .+..+..+|+|++||+.++.++..
T Consensus        80 ~~~i~~v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~  157 (277)
T PRK13642         80 RRKIGMVFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL  157 (277)
T ss_pred             hcceEEEEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence            011223555531 1111  34444443222222221111112344556655553  244567999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +++++|+|||+..+|...++.+.+++.        ..|+++|+.+.
T Consensus       158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~  203 (277)
T PRK13642        158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE  203 (277)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999988877777764        23777777655

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.5e-23  Score=181.50  Aligned_cols=177  Identities=14%  Similarity=0.100  Sum_probs=117.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK--  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~--  147 (270)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |     ++|++ +++...  
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~   74 (249)
T PRK14253          2 NKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIYG   74 (249)
T ss_pred             CeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEccc
Confidence            5789999999997532    6799999999999999999999999999999999984   3     46663 332111  


Q ss_pred             --CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccC------CCcCCCCCCcccC
Q 024225          148 --PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (270)
Q Consensus       148 --~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~  214 (270)
                        .+    ....++..+... +.  .++.++........+.... .......+.++.++..      .+..+..+|+|++
T Consensus        75 ~~~~~~~~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~  151 (249)
T PRK14253         75 NIDVADLRIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ  151 (249)
T ss_pred             ccchHHHHhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence              00    112224433321 11  2333333222111121110 1112233445554432      2345568999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ||+.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~  205 (249)
T PRK14253        152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ  205 (249)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            999999999999999999999999999877777776662      367777664

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.1e-23  Score=182.20  Aligned_cols=180  Identities=13%  Similarity=0.080  Sum_probs=120.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~~----  148 (270)
                      ++++++|+++.|+...    +++++||+|++||+++|+||||||||||+++|+|++.  ..++++|++ +++....    
T Consensus        11 ~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~   86 (259)
T PRK14274         11 EVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV   86 (259)
T ss_pred             ceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence            5799999999997532    6799999999999999999999999999999999983  001156773 3332110    


Q ss_pred             C-----CceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 P-----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 p-----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                      .     ....+++++.....   .+..++..+.....+... ........++++.++..      .+..+..+|+||+||
T Consensus        87 ~~~~~~~~i~~v~q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr  163 (259)
T PRK14274         87 DLVELRKNIGMVFQKGNPFP---QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR  163 (259)
T ss_pred             CHHHHhhceEEEecCCcccc---cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence            0     11222444432211   133333322222222111 11112334556665543      234566899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +.++.++..+++++++|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~  215 (259)
T PRK14274        164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ  215 (259)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence            9999999999999999999999999888777777763      377777764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.89  E-value=1.6e-23  Score=184.42  Aligned_cols=176  Identities=13%  Similarity=0.079  Sum_probs=120.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C-----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P-----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p-----  149 (270)
                      ++++|+++.|++..    +++++||++++||+++|+||||||||||+++|+|+++   |++|++ +++... . +     
T Consensus         2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873         2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence            57889999997633    7799999999999999999999999999999999985   788873 333211 0 0     


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHH-h---cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                      ....++..+....  ...++.++...... .   .+.....+...+.++++.+.+..  +..+..+|+|++||++++.++
T Consensus        75 ~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  152 (256)
T TIGR03873        75 RRVALVEQDSDTA--VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL  152 (256)
T ss_pred             hheEEecccCccC--CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            0122244332111  11344333322110 0   11111112234556677766643  456679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ..+++++|+|||+..+|...++.+.+++..       .|+++|+.+
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  198 (256)
T TIGR03873       153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN  198 (256)
T ss_pred             hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999999999999888877777762       266677654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=6.1e-23  Score=168.04  Aligned_cols=157  Identities=18%  Similarity=0.259  Sum_probs=117.8

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      ++.++++|+.|.|+...    +|++||++-+.|++|.|+|.||||||||++||.=+-                .|..|. 
T Consensus         4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE----------------~P~~G~-   62 (256)
T COG4598           4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE----------------KPSAGS-   62 (256)
T ss_pred             ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc----------------CCCCce-
Confidence            35689999999999866    789999999999999999999999999999998876                444454 


Q ss_pred             eecCCCCccc-----cccCc--ccChHHHHHhcCC-CCCccHHHHHHHHHhhcc--------------------------
Q 024225          155 LPMDGFHLYL-----SQLDA--MEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN--------------------------  200 (270)
Q Consensus       155 i~~dg~~~~~-----~~l~~--~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~--------------------------  200 (270)
                      |..+|..+.-     .++..  ....+..+.+.|+ ++.|++-.-+++++|+-.                          
T Consensus        63 I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi  142 (256)
T COG4598          63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI  142 (256)
T ss_pred             EEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCc
Confidence            4444443321     00111  1223445566676 666777666777776542                          


Q ss_pred             C--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          201 Q--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       201 ~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .  .+.|+..+|||+.||++++++++..|++++.|||+..||+++--++...+.
T Consensus       143 ~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~  196 (256)
T COG4598         143 AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ  196 (256)
T ss_pred             hhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHH
Confidence            1  346777899999999999999999999999999999999966555555444

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.8e-23  Score=181.51  Aligned_cols=179  Identities=15%  Similarity=0.122  Sum_probs=122.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCccc-CCCCCC-C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASS-FDSQVK-P--  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~---~~G~~-~~~~~~-~--  148 (270)
                      ++++++||++.|++..    +++++||++++||+++|+||||||||||+++|+|++. ..|   ++|++ +++... .  
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~p~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14239          4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND-LNPEVTITGSIVYNGHNIYSPR   78 (252)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc-cCCCCCccceEEECCEECcCcc
Confidence            4689999999997532    6799999999999999999999999999999999852 114   47874 333211 0  


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~  215 (270)
                            .....++.++... +.  .++.++........+... ........++++.+...      .+..+..+|+|++|
T Consensus        79 ~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (252)
T PRK14239         79 TDTVDLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQ  155 (252)
T ss_pred             cchHhhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHH
Confidence                  0112335554332 21  344444433222223211 11122334556655542      23456789999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      |++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  208 (252)
T PRK14239        156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ  208 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHH
Confidence            99999999999999999999999999888888777763      377777764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.89  E-value=3.4e-23  Score=183.41  Aligned_cols=158  Identities=13%  Similarity=0.133  Sum_probs=102.0

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccC
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMED  172 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~  172 (270)
                      ..+++++||++++|+++||+||||||||||+++|+|++.   |++|++ +++.     .+ ++.+...  ....++..++
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~-----~~-~~~~~~~--~~~~~tv~en  105 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGE-----VS-VIAISAG--LSGQLTGIEN  105 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE-----Ee-EEecccC--CCCCCcHHHH
Confidence            457899999999999999999999999999999999984   555542 2221     00 0111111  1111333333


Q ss_pred             hHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHh
Q 024225          173 PKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (270)
Q Consensus       173 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~  250 (270)
                      ........+............+++.+.++.  +..+..+|+||+||++++.++..+++++|+|||+..+|....+.+.++
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~  185 (264)
T PRK13546        106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK  185 (264)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence            222111123211111112234455544443  345679999999999999999999999999999999999776666666


Q ss_pred             hc-------cceEEecccc
Q 024225          251 FD-------EKCYATSFKE  262 (270)
Q Consensus       251 ~~-------~~i~v~~~~~  262 (270)
                      +.       ..|+++|+.+
T Consensus       186 L~~~~~~g~tiIiisH~~~  204 (264)
T PRK13546        186 IYEFKEQNKTIFFVSHNLG  204 (264)
T ss_pred             HHHHHHCCCEEEEEcCCHH
Confidence            54       2367777654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.3e-23  Score=182.73  Aligned_cols=179  Identities=12%  Similarity=0.128  Sum_probs=121.3

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-  149 (270)
                      ...++++||++.|++..    +|+++||++.+|++++|+||||||||||+++|+|++.   |++|++ +++....   + 
T Consensus         5 ~~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~   77 (265)
T PRK10253          5 VARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK   77 (265)
T ss_pred             ccEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence            35689999999998632    6799999999999999999999999999999999985   778873 3432110   0 


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHH-HhcCCC---CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAP---WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~---~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~  220 (270)
                         ....++.++.....  ..+..++..... ...+..   .......+.++++.+++..  +..+..+|+|++||+.++
T Consensus        78 ~~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la  155 (265)
T PRK10253         78 EVARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA  155 (265)
T ss_pred             HHhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence               11223454433221  123322221100 000000   0011223456666666543  556779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      .++..+++++|+|||+..+|...++.+.+++.        ..|+++|+.+
T Consensus       156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~  205 (265)
T PRK10253        156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN  205 (265)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999987777766664        2367777765

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.89  E-value=2.7e-23  Score=180.83  Aligned_cols=172  Identities=13%  Similarity=0.125  Sum_probs=112.3

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------P  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------p  149 (270)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....       .
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252           1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence            36789999996421  226799999999999999999999999999999999985   777873 3332110       0


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHH---------HHHHhhccC----CCcCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQ----GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~~~----~~~~~~~~S~g~~~r  216 (270)
                      ....++.++... +.  .++.++...     +.. ......+.         +.++.+..+    .+..+..+|+||+||
T Consensus        76 ~~i~~~~q~~~~-~~--~tv~~nl~~-----~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr  146 (237)
T cd03252          76 RQVGVVLQENVL-FN--RSIRDNIAL-----ADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR  146 (237)
T ss_pred             hcEEEEcCCchh-cc--chHHHHhhc-----cCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence            112224444321 11  232222111     101 01111111         122222111    123567999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  199 (237)
T cd03252         147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLST  199 (237)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            9999999999999999999999999888877777752      2666666643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.7e-23  Score=181.12  Aligned_cols=179  Identities=15%  Similarity=0.129  Sum_probs=121.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++|+++.|++..    +++|+||++++|++++|+||||||||||+++|+|++....|++|++ +++....       
T Consensus         2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            478899999997532    6799999999999999999999999999999999973222577773 3332110       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCC--CccHHHHHHHHHhhccC------CCcCCCCCCcccCChhhhh
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~--~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv~~~  220 (270)
                      .....++.++.. ++.  .+..++........+...  ......+.++++.+++.      .+..+..+|+|++||++++
T Consensus        78 ~~~i~~~~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  154 (246)
T PRK14269         78 RKNVGMVFQQPN-VFV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA  154 (246)
T ss_pred             hhhEEEEecCCc-ccc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence            011222444432 221  244444332222222211  11122345667776663      2345678999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      .++..+++++|+|||+..+|......+.+.+..      .|+++|+.+
T Consensus       155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~  202 (246)
T PRK14269        155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ  202 (246)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            999999999999999999999888887777752      266666654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.89  E-value=2.9e-23  Score=192.06  Aligned_cols=180  Identities=16%  Similarity=0.165  Sum_probs=116.7

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      .+.+++++++|.|++.    .|+++|||++++|||.||+|+||||||||+++|.|+++   |++|++ +++..+   .| 
T Consensus         2 ~~~l~~~~itK~f~~~----~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           2 EPALEMRGITKRFPGV----VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             CceEEEeccEEEcCCE----EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence            3578999999999974    48999999999999999999999999999999999994   555552 333211   11 


Q ss_pred             -----CceEEeecCCCCccccccCcccChHHHHHhc-C-C-CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-A-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (270)
Q Consensus       150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g-~-~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~  219 (270)
                           -.|. +.+. |.+ -+.+++.+|.-...... + . ........+.++.+.+++.  .+.++..+|-|++||+++
T Consensus        75 dA~~~GIGM-VhQH-F~L-v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI  151 (501)
T COG3845          75 DAIRLGIGM-VHQH-FML-VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI  151 (501)
T ss_pred             HHHHcCCcE-Eeec-ccc-ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence                 1222 2221 111 11234444332211110 0 0 0001112223334433333  344566889999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      ..++..++++||+|||+..|-+.-.+++...++       ..|||+|-.++.
T Consensus       152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev  203 (501)
T COG3845         152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV  203 (501)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence            999999999999999999998854444444444       449999977543

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=5.3e-23  Score=182.39  Aligned_cols=180  Identities=13%  Similarity=0.102  Sum_probs=117.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~----  148 (270)
                      ++++++|+++.|++..    +|+++||++++|+++||+|+||||||||+++|+|++.-.  .|++|++ +++....    
T Consensus        20 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   95 (268)
T PRK14248         20 HILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI   95 (268)
T ss_pred             ceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence            4699999999997533    679999999999999999999999999999999986200  1467773 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           .....++.++... +.  .+..++........+... ........+.++.+...      .+..+..+|+|++||
T Consensus        96 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  172 (268)
T PRK14248         96 NVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR  172 (268)
T ss_pred             cHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence                 0112224443321 11  133333222111111110 00112234445554442      234567899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      +.++.++..+++++|+|||+..+|....+.+.+++.      ..|+++|+.+
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~  224 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ  224 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHH
Confidence            999999999999999999999999987777777665      2367777764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.89  E-value=3.8e-23  Score=182.70  Aligned_cols=178  Identities=15%  Similarity=0.096  Sum_probs=120.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---Cccc-CCCCCCCC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVKPP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~---~G~~-~~~~~~~p--  149 (270)
                      ++++++||++.|++..    +++++||++.+||+++|+||||||||||+++|+|++.   |+   +|++ +++.....  
T Consensus         3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~   75 (262)
T PRK09984          3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG   75 (262)
T ss_pred             cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence            4789999999997533    6799999999999999999999999999999999985   54   3663 34321100  


Q ss_pred             ----------CceEEeecCCCCccccccCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccCC--CcCCCCC
Q 024225          150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSF  209 (270)
Q Consensus       150 ----------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~  209 (270)
                                ....++.++....  +.++..++.......        ++...........++++.+++..  +..+..+
T Consensus        76 ~~~~~~~~~~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  153 (262)
T PRK09984         76 RLARDIRKSRANTGYIFQQFNLV--NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL  153 (262)
T ss_pred             ccchhHHHHHhheEEEccccccc--cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence                      0122244443221  123443333221100        00001111234456677666642  4566789


Q ss_pred             CcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       210 S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      |+|++||++++.++..++++||+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~  214 (262)
T PRK09984        154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD  214 (262)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999999999877777766652        266777764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.88  E-value=2.7e-23  Score=180.38  Aligned_cols=171  Identities=16%  Similarity=0.117  Sum_probs=111.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----  149 (270)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   +    
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (234)
T cd03251           1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR   75 (234)
T ss_pred             CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence            36789999997531  126799999999999999999999999999999999985   777773 3332110   0    


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHH---------HHHHHhhc--cC--CCcCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLR--NQ--GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~--~~--~~~~~~~~S~g~~~r  216 (270)
                      ....++..+... ..  .+..++..     ++.. .......         .+.++.+.  ..  .+..+..+|+|++||
T Consensus        76 ~~i~~~~q~~~~-~~--~tv~enl~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr  146 (234)
T cd03251          76 RQIGLVSQDVFL-FN--DTVAENIA-----YGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR  146 (234)
T ss_pred             hhEEEeCCCCee-cc--ccHHHHhh-----ccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence            011223333221 11  12221111     1111 0111111         12222221  11  133466899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~  198 (234)
T cd03251         147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS  198 (234)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            9999999999999999999999999888877777752      266666654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.88  E-value=9e-23  Score=176.33  Aligned_cols=178  Identities=16%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----  148 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----  148 (270)
                      ..++++++|+++.|++.. ...+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....    
T Consensus         8 ~~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~   83 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH   83 (226)
T ss_pred             cCceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence            346799999999997521 1237899999999999999999999999999999999984   667763 3331100    


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccH--H-----HHHHHHHhh--ccC--CCcCCCCCCccc
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNP--L-----LLLNCLKNL--RNQ--GSVYAPSFDHGV  213 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~--~-----~~~~~l~~l--~~~--~~~~~~~~S~g~  213 (270)
                         .....++..+.. ++.  .+..++.     .++.. .....  .     ...+.++.+  ++.  .+..+..+|+|+
T Consensus        84 ~~~~~~i~~~~q~~~-l~~--~tv~~nl-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~  155 (226)
T cd03248          84 KYLHSKVSLVGQEPV-LFA--RSLQDNI-----AYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ  155 (226)
T ss_pred             HHHHhhEEEEecccH-HHh--hhHHHHh-----ccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence               011122333321 111  1221111     11111 00000  0     012344444  222  234567899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +||+.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  211 (226)
T cd03248         156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST  211 (226)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            9999999999999999999999999999888877777762      3677777643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.7e-23  Score=183.88  Aligned_cols=180  Identities=12%  Similarity=0.033  Sum_probs=118.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CCc
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PDV  151 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~~  151 (270)
                      .++++||++.|++..   .+++|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++....    ...
T Consensus         6 ~l~~~~l~~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL   79 (272)
T ss_pred             eEEEEeEEEEecCCc---EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence            488999999996311   26799999999999999999999999999999999985   777773 3432110    011


Q ss_pred             eEEeecCCCCccccccCcccChHHHH-HhcCC---CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      ..++..+............++..... ...+.   ..........+.++.+++..  +..+..+|+|++||++++.++..
T Consensus        80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~  159 (272)
T PRK15056         80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ  159 (272)
T ss_pred             EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            22233332110000011111110000 00111   10111223455666666542  45667999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +++++|+|||+..+|+..++.+.+++.       ..|+++|+.+
T Consensus       160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~  203 (272)
T PRK15056        160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG  203 (272)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            999999999999999988888877775       2377777764

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.3e-23  Score=181.04  Aligned_cols=182  Identities=15%  Similarity=0.124  Sum_probs=120.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCC-C--
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVK-P--  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~-~--  148 (270)
                      ++.++++||++.|++..    +++|+||++++||+++|+|+||||||||+|+|+|+++-.-|  ++|++ +++... .  
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   80 (259)
T PRK14260          5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR   80 (259)
T ss_pred             cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence            45799999999997532    67999999999999999999999999999999999840001  46763 333211 0  


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~  215 (270)
                            .....++.++... +.  .+..++........+. ..........++++.++..      .+..+..+|+|++|
T Consensus        81 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q  157 (259)
T PRK14260         81 ININRLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ  157 (259)
T ss_pred             cchHhhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence                  0112224444322 21  3444443322211221 1111122344556655442      24456799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+.++.++..+++++|+|||+..+|....+.+.+++..      .|+++|+.+.
T Consensus       158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  211 (259)
T PRK14260        158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ  211 (259)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999999999999999999999999877777776652      3677776643

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.88  E-value=8e-23  Score=175.99  Aligned_cols=170  Identities=14%  Similarity=0.102  Sum_probs=112.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------P  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------p  149 (270)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....       .
T Consensus         3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (221)
T cd03244           3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR   77 (221)
T ss_pred             EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence            67899999997522  126799999999999999999999999999999999984   677763 3331100       0


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~~~r  216 (270)
                      ....++..+.. +..  .+..++       .............+.++.+...             ....+..+|+||+||
T Consensus        78 ~~i~~~~q~~~-l~~--~tv~en-------l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr  147 (221)
T cd03244          78 SRISIIPQDPV-LFS--GTIRSN-------LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL  147 (221)
T ss_pred             hhEEEECCCCc-ccc--chHHHH-------hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH
Confidence            11122333332 111  122211       1111111222233333333221             123566899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++++.++..+++++|+|||+..+|+..++.+.+++..      .|+++|+.+
T Consensus       148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~  199 (221)
T cd03244         148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLD  199 (221)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            9999999999999999999999999888887777763      266676654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.8e-23  Score=179.94  Aligned_cols=177  Identities=13%  Similarity=0.117  Sum_probs=117.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCC-C
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK-P  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~-~  148 (270)
                      ++++++||++.|++..    +++++||+|++|+++||+||||||||||+++|+|++.   |+     .|++ +++... .
T Consensus         3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS   75 (251)
T ss_pred             ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence            5689999999997532    6799999999999999999999999999999999985   55     4663 332211 0


Q ss_pred             --------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccC------CCcCCCCCCccc
Q 024225          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (270)
Q Consensus       149 --------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~------~~~~~~~~S~g~  213 (270)
                              .....++.++...+ .  .+..++..+.....+.... .....+...++.+++.      .+..+..+|+||
T Consensus        76 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq  152 (251)
T PRK14249         76 PNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ  152 (251)
T ss_pred             cccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence                    11122344443221 1  2333333322222222111 1112233444444432      235567899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +||++++.++..+++++|+|||+..+|...++.+.+++..      .|.++|+.+
T Consensus       153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~  207 (251)
T PRK14249        153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ  207 (251)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999999999999999999999999877777666652      366666653

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.3e-23  Score=184.19  Aligned_cols=182  Identities=14%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC---
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP---  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~---  148 (270)
                      .++++++||++.|++..    +++|+||+|++|++++|+||||||||||+++|+|++...  +|++|++ +++....   
T Consensus        37 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~  112 (286)
T PRK14275         37 KPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF  112 (286)
T ss_pred             ceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence            35789999999997532    679999999999999999999999999999999985211  1377773 3332110   


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~  215 (270)
                            .....++.++.. ++.  .++.++..+.....+... ......+.+.++.++..      .+..+..+|+||+|
T Consensus       113 ~~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q  189 (286)
T PRK14275        113 TDEVLLRKKIGMVFQKPN-PFP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ  189 (286)
T ss_pred             cchHHhhhcEEEECCCCC-CCc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence                  011222444432 111  244443333222222211 00112234455555432      24456799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+.++.++..++++||+|||+..+|...++.+.++++.      .|+++|+.+.
T Consensus       190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~  243 (286)
T PRK14275        190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ  243 (286)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            99999999999999999999999999877777777752      3777777654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=8.2e-23  Score=179.38  Aligned_cols=177  Identities=12%  Similarity=0.097  Sum_probs=117.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCC-C-
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK-P-  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~-~-  148 (270)
                      +++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |+     +|++ +++... . 
T Consensus         4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~   76 (252)
T PRK14272          4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP   76 (252)
T ss_pred             EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence            588999999997532    6799999999999999999999999999999999984   43     6773 333211 0 


Q ss_pred             -------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhcc------CCCcCCCCCCcccC
Q 024225          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG  214 (270)
Q Consensus       149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~~S~g~~  214 (270)
                             .....++.++.....  .++..++........+... ........+.++.+..      ..+..+..+|+||+
T Consensus        77 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  154 (252)
T PRK14272         77 RVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ  154 (252)
T ss_pred             ccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence                   011223444433211  1344443332221122111 0011222333333322      12455678999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ||++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~  208 (252)
T PRK14272        155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH  208 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            999999999999999999999999999888777777652      266667664

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=8.7e-23  Score=180.70  Aligned_cols=179  Identities=14%  Similarity=0.114  Sum_probs=115.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK-----  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~-----  147 (270)
                      ++++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.-.  .|++|++ +++...     
T Consensus         9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   84 (264)
T PRK14243          9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV   84 (264)
T ss_pred             eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence            4799999999997632    679999999999999999999999999999999997310  0256763 333211     


Q ss_pred             CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225          148 PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       148 ~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv  217 (270)
                      .+    ....++.++... +.  .+..++........++. .........+++.+...      .+..+..+|+||+||+
T Consensus        85 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv  160 (264)
T PRK14243         85 DPVEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL  160 (264)
T ss_pred             ChHHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence            00    011223333221 11  12322222211111111 01112223334443331      2345668999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      .++.++..+++++|+|||+..+|....+.+.+++.      ..|+++|+.+
T Consensus       161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~  211 (264)
T PRK14243        161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ  211 (264)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            99999999999999999999999988877777775      2367777764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.88  E-value=7.8e-23  Score=175.94  Aligned_cols=172  Identities=15%  Similarity=0.125  Sum_probs=113.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p----  149 (270)
                      ++++|+++.|++..  ..+++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+    
T Consensus         3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (220)
T cd03245           3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR   77 (220)
T ss_pred             EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence            67899999996521  226799999999999999999999999999999999985   777773 333211   00    


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--C-----------cCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~-----------~~~~~~S~g~~~r  216 (270)
                      ....++.++... +.  .+..++.     .+... ......+.+.++.+.+..  +           .....+|+||+||
T Consensus        78 ~~i~~~~q~~~~-~~--~tv~e~l-----~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr  148 (220)
T cd03245          78 RNIGYVPQDVTL-FY--GTLRDNI-----TLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA  148 (220)
T ss_pred             hhEEEeCCCCcc-cc--chHHHHh-----hcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence            112223333221 11  1221111     11111 112223334444433321  1           1235899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  201 (220)
T cd03245         149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL  201 (220)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            9999999999999999999999999888777776652      3677777653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.8e-23  Score=182.11  Aligned_cols=181  Identities=12%  Similarity=0.084  Sum_probs=119.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~~----  148 (270)
                      ++++++|+++.|++..    +++|+||+|++|+++||+|+||||||||+++|+|++.  ..+|++|++ +++....    
T Consensus        23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            4699999999997533    6799999999999999999999999999999999983  111477773 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhcc------CCCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~l~~------~~~~~~~~~S~g~~~r  216 (270)
                           .....++.++... +.  .+..++........+...... ...+.+.++.+..      ..+..+..+|+|++||
T Consensus        99 ~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr  175 (271)
T PRK14238         99 SVEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR  175 (271)
T ss_pred             cHHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence                 1112224444322 11  233333332211112111000 1122333433321      1234567899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~  228 (271)
T PRK14238        176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ  228 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence            9999999999999999999999999888888777752      3777777653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.88  E-value=5.2e-23  Score=195.13  Aligned_cols=169  Identities=15%  Similarity=0.122  Sum_probs=116.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++||++.|++... ..+|+++||++++|+++||+||||||||||+++|+|++.   |++|+              +
T Consensus        20 ~mL~lknL~~~~~~~~~-~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGe--------------I   81 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEY-HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGT--------------V   81 (549)
T ss_pred             ceeEEEEEEEecCCCcc-ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceE--------------E
Confidence            35888999988876321 236799999999999999999999999999999999983   45554              3


Q ss_pred             ecCCCCc-------cccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          156 PMDGFHL-------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       156 ~~dg~~~-------~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      .++|...       ....++..++........+............+++.+.+..  +..+..||+||+||+++++++..+
T Consensus        82 ~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~  161 (549)
T PRK13545         82 DIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN  161 (549)
T ss_pred             EECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence            3333210       1111333333322111122211111122345566666543  456679999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      |++||+|||+..||+..++.+.+++.       ..|+++|+.+
T Consensus       162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~  204 (549)
T PRK13545        162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS  204 (549)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            99999999999999987777777664       2367777764

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=180.69  Aligned_cols=191  Identities=14%  Similarity=0.057  Sum_probs=123.7

Q ss_pred             hhhccccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-C
Q 024225           66 KVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-F  142 (270)
Q Consensus        66 ~~~~~~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~  142 (270)
                      ..+...+...++++++|+++.|++..    +++++||++++|+++||+||||||||||+++|+|++.-  ..|++|++ +
T Consensus        14 ~~~~~~~~~~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i   89 (272)
T PRK14236         14 LDVLNLSDEQTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL   89 (272)
T ss_pred             ccccccCCCCcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence            33444444556899999999997532    67999999999999999999999999999999999730  01367763 3


Q ss_pred             CCCCCC---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccC------CCcCC
Q 024225          143 DSQVKP---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYA  206 (270)
Q Consensus       143 ~~~~~~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~------~~~~~  206 (270)
                      ++....         .....++.++.. ++.  .+..++........+.... .......+.++.+++.      .+..+
T Consensus        90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  166 (272)
T PRK14236         90 DGQNIYDKKVDVAELRRRVGMVFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENA  166 (272)
T ss_pred             CCEECcccccCHHHHhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc
Confidence            332110         011222443322 111  1333333222111221100 0112234455555543      13456


Q ss_pred             CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       207 ~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ..+|+|++||++++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~  229 (272)
T PRK14236        167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ  229 (272)
T ss_pred             ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence            78999999999999999999999999999999999877777776652      3666776643

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=7e-23  Score=206.60  Aligned_cols=161  Identities=18%  Similarity=0.153  Sum_probs=125.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|+..+ .+.+|+|+||+|++|+.|+|+|||||||||++++|.+++                .|+.|. |.
T Consensus       350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy----------------dP~~G~-V~  411 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY----------------DPTSGE-VL  411 (1228)
T ss_pred             ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc----------------CCCCce-EE
Confidence            589999999999854 366789999999999999999999999999999999999                777888 88


Q ss_pred             cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC----------------------------C----c
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----------------------------S----V  204 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~----------------------------~----~  204 (270)
                      +||.++...      +.+..+...|+-.|.......++.+|+.+|.                            +    -
T Consensus       412 idG~di~~~------~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge  485 (1228)
T KOG0055|consen  412 IDGEDIRNL------NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE  485 (1228)
T ss_pred             EcCccchhc------chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence            888876542      2233455566543332222234555555431                            1    1


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      ..+++||||+||+++++++..+|+||++||++..||+...+.+.+.+|      ..|-|+|..
T Consensus       486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRL  548 (1228)
T KOG0055|consen  486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRL  548 (1228)
T ss_pred             CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeeh
Confidence            234799999999999999999999999999999999999999999888      346677665

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.88  E-value=4.1e-23  Score=179.95  Aligned_cols=176  Identities=18%  Similarity=0.218  Sum_probs=119.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~  151 (270)
                      ++++|+++.|++..    +++++||++.+|+++||+||||||||||+++|+|++.   |++|++ +++...   .+  ..
T Consensus         1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK   73 (237)
T ss_pred             CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence            36789999997632    6799999999999999999999999999999999985   788873 333211   01  11


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++..+....  +.++..++..+.....+.........+.++++.+.+..  +..+..||+||+||++++.++..++++
T Consensus        74 i~~~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l  151 (237)
T TIGR00968        74 IGFVFQHYALF--KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV  151 (237)
T ss_pred             EEEEecChhhc--cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            22244433221  11344343332222222111112233456666666543  445568999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      +|+|||+..+|...++.+.+++.+        .|+++|+.+
T Consensus       152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~  192 (237)
T TIGR00968       152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE  192 (237)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999999888777777652        356666554

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=9.9e-23  Score=179.75  Aligned_cols=179  Identities=15%  Similarity=0.147  Sum_probs=124.1

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC------C-C
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS------Q-V  146 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~------~-~  146 (270)
                      .++++++++++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++      . .
T Consensus         8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~   80 (257)
T PRK14246          8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI   80 (257)
T ss_pred             hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence            35799999999998743    7799999999999999999999999999999999985   788753 222      1 1


Q ss_pred             C--C----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC------CcCCCCCCccc
Q 024225          147 K--P----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGV  213 (270)
Q Consensus       147 ~--~----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~  213 (270)
                      .  .    .....++..+....  +.++..++........+.. .........+.++.++...      +..+..||+|+
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~  158 (257)
T PRK14246         81 FQIDAIKLRKEVGMVFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ  158 (257)
T ss_pred             ccCCHHHHhcceEEEccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence            0  0    01122344443322  1234444443322222221 1111233456666666542      34566899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +||++++.++..+|+++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~  213 (257)
T PRK14246        159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ  213 (257)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH
Confidence            9999999999999999999999999999888888877762      366666654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.88  E-value=4.5e-23  Score=197.99  Aligned_cols=179  Identities=15%  Similarity=0.143  Sum_probs=124.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      ++++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   +  
T Consensus         3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   75 (501)
T PRK11288          3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA   75 (501)
T ss_pred             ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence            5799999999997632    6799999999999999999999999999999999985   788884 3332110   0  


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHH--hcCC-CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~--~~g~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                         ....++.++....  ..+++.++......  ..+. ........+.++++.+++..  +..+..||+||+||++++.
T Consensus        76 ~~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar  153 (501)
T PRK11288         76 ALAAGVAIIYQELHLV--PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK  153 (501)
T ss_pred             HHhCCEEEEEechhcc--CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence               1122344443211  11344333322110  0111 11111234566777777643  4556799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ++..+++++|+|||+..+|+...+.+.+++..       .|+++|+.+.
T Consensus       154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~  202 (501)
T PRK11288        154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE  202 (501)
T ss_pred             HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999999999999999888888777762       3778887653

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.88  E-value=1e-22  Score=178.32  Aligned_cols=178  Identities=16%  Similarity=0.095  Sum_probs=111.0

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p----  149 (270)
                      ++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++. ..|++|++ +++...   .+    
T Consensus         2 i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~~   76 (248)
T PRK09580          2 LSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLELSPEDRA   76 (248)
T ss_pred             eEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-CCCCceEEEECCCccccCCHHHHh
Confidence            78899999998632    6799999999999999999999999999999999941 01666763 333211   00    


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHh---cCCCCCcc----HHHHHHHHHhhccCC---CcCCC-CCCcccCChh
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTFN----PLLLLNCLKNLRNQG---SVYAP-SFDHGVGDPV  217 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~---~g~~~~~~----~~~~~~~l~~l~~~~---~~~~~-~~S~g~~~rv  217 (270)
                       ....++..+......  ++...........   .......+    .....+.++.+.+..   ..... .+|+||+||+
T Consensus        77 ~~~i~~~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv  154 (248)
T PRK09580         77 GEGIFMAFQYPVEIPG--VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN  154 (248)
T ss_pred             hcceEEEecCchhccc--hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence             011112333221110  1100000000000   00000001    122344555555521   22232 6999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +++.++..+++++|+|||+..+|....+.+.+++.       ..|+++|+.+
T Consensus       155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~  206 (248)
T PRK09580        155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR  206 (248)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            99999999999999999999999988887776554       2267777654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.88  E-value=4.4e-23  Score=198.85  Aligned_cols=178  Identities=15%  Similarity=0.155  Sum_probs=121.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCccc-CCC----------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASS-FDS----------  144 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll--~~~~~~~G~~-~~~----------  144 (270)
                      ++++|+++.|++..    +++++||++++|+++||+||||||||||+++|+|++  .   |++|++ +++          
T Consensus         1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~   73 (520)
T TIGR03269         1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE   73 (520)
T ss_pred             CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence            46789999997532    679999999999999999999999999999999996  4   788874 321          


Q ss_pred             -------------CCC--------C---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH
Q 024225          145 -------------QVK--------P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC  194 (270)
Q Consensus       145 -------------~~~--------~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~  194 (270)
                                   ...        .         .....+++++...+. ..+++.++..+.....+.........+.++
T Consensus        74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~  152 (520)
T TIGR03269        74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVDL  152 (520)
T ss_pred             cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                         000        0         001122444311111 113444444332222333221122345667


Q ss_pred             HHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          195 LKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       195 l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++.+++..  +..+..+|+||+||++++.++..+|++|++|||+..||+...+.+.+++.        ..|+++|+.+.
T Consensus       153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  231 (520)
T TIGR03269       153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV  231 (520)
T ss_pred             HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            77777653  45677999999999999999999999999999999999988887655443        23778887753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.88  E-value=3e-23  Score=167.68  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      ++++|+++.|++..    +++++||++++||+++|+||||||||||+++|+|++                +|+.|. +.+
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~   59 (144)
T cd03221           1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL----------------EPDEGI-VTW   59 (144)
T ss_pred             CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC----------------CCCceE-EEE
Confidence            36789999997632    679999999999999999999999999999999998                678888 777


Q ss_pred             CCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~  237 (270)
                      ++..                 ..++.                       +++|+|++||++++.++..+++++|+|||+.
T Consensus        60 ~~~~-----------------~i~~~-----------------------~~lS~G~~~rv~laral~~~p~illlDEP~~   99 (144)
T cd03221          60 GSTV-----------------KIGYF-----------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTN   99 (144)
T ss_pred             CCeE-----------------EEEEE-----------------------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            7630                 11111                       1199999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhhcc----ceEEeccccc
Q 024225          238 FLDGGVWKDVSSMFDE----KCYATSFKET  263 (270)
Q Consensus       238 ~lDe~~~~~l~~~~~~----~i~v~~~~~~  263 (270)
                      .+|...++.+.+.+..    .++++|+.+.
T Consensus       100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~  129 (144)
T cd03221         100 HLDLESIEALEEALKEYPGTVILVSHDRYF  129 (144)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            9999888888777763    3667766543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=178.71  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=119.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC---
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP---  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~---  148 (270)
                      .++++++|+++.|++..    +|+|+||++++|++++|+||||||||||+++|+|++.-.  ++++|++ +++....   
T Consensus         4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   79 (253)
T PRK14261          4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG   79 (253)
T ss_pred             cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence            45799999999997533    779999999999999999999999999999999986300  0136773 3332110   


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~  215 (270)
                            .....++.++... +.  .++.++..+.....+... ........++++.+.+.      .+.....+|+|++|
T Consensus        80 ~~~~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q  156 (253)
T PRK14261         80 ADVVALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ  156 (253)
T ss_pred             cchhhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence                  0112224444322 11  244444433222222211 01112334455555442      23456689999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      |+.++.++..+++++|+|||+..+|...++.+.++++.      .|+++|+.+
T Consensus       157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~  209 (253)
T PRK14261        157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ  209 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHH
Confidence            99999999999999999999999999888877777762      266666654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.88  E-value=1.1e-22  Score=177.13  Aligned_cols=172  Identities=16%  Similarity=0.125  Sum_probs=107.4

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----  149 (270)
                      ++++|+++.|++.. ...+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   +    
T Consensus         1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (238)
T cd03249           1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR   76 (238)
T ss_pred             CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence            36789999996421 1236799999999999999999999999999999999984   666663 3321100   0    


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH---------HHhhccC----CCcCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQ----GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~~~----~~~~~~~~S~g~~~r  216 (270)
                      ....++..+... ..  .+..++.     .++... .........         ++.+..+    ....+..+|+|++||
T Consensus        77 ~~i~~~~q~~~~-~~--~tv~e~l-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr  147 (238)
T cd03249          77 SQIGLVSQEPVL-FD--GTIAENI-----RYGKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR  147 (238)
T ss_pred             hhEEEECCchhh-hh--hhHHHHh-----hccCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence            011112222211 00  1111111     011110 111111111         1111111    123456899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~  199 (238)
T cd03249         148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLS  199 (238)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            9999999999999999999999999887777777652      266666654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=1.6e-22  Score=163.85  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      +++.++...-++..    +|+++||++.+||+++|.||||||||||+|+++-++                .|++|. +.+
T Consensus         4 le~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li----------------sp~~G~-l~f   62 (223)
T COG4619           4 LELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI----------------SPTSGT-LLF   62 (223)
T ss_pred             hHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc----------------CCCCce-EEE
Confidence            44555544444422    669999999999999999999999999999999999                566666 555


Q ss_pred             CCCCccccccCcc-cChHHHH-----------HhcCCC-----CCccHHHHHHHHHhhccCC---CcCCCCCCcccCChh
Q 024225          158 DGFHLYLSQLDAM-EDPKEAH-----------ARRGAP-----WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV  217 (270)
Q Consensus       158 dg~~~~~~~l~~~-~~~~~~~-----------~~~g~~-----~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv  217 (270)
                      .|..+........ ....+..           .+.-+|     ..+|...+..+++.+..+.   ...+-.+|||++||.
T Consensus        63 ~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri  142 (223)
T COG4619          63 EGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI  142 (223)
T ss_pred             cCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH
Confidence            5554432111000 0000000           011111     1235667778888888875   345668999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY  264 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~  264 (270)
                      ++.+.+..-|+||++||++..|||...+.+.+++..        .+.|+||.|.+
T Consensus       143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa  197 (223)
T COG4619         143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA  197 (223)
T ss_pred             HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH
Confidence            999999999999999999999999999998888872        25788888764

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.5e-22  Score=173.22  Aligned_cols=182  Identities=15%  Similarity=0.083  Sum_probs=121.6

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc--CCCCCCCC--
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPP--  149 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--~~~~~~~p--  149 (270)
                      +.++++++||+..|++..    +|+|+|++|++||-++|+||||||||||+++++|..   ||.+|.+  +....-+.  
T Consensus        28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~---~pssg~~~~~G~~~G~~~~  100 (257)
T COG1119          28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH---PPSSGDVTLLGRRFGKGET  100 (257)
T ss_pred             CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhccc---CCCCCceeeeeeeccCCcc
Confidence            456799999999999855    679999999999999999999999999999999998   3655552  21110000  


Q ss_pred             ------CceEEee-cCCCCccccccCcccCh-HHHHHhcCCCC-Ccc---HHHHHHHHHhhccC--CCcCCCCCCcccCC
Q 024225          150 ------DVATVLP-MDGFHLYLSQLDAMEDP-KEAHARRGAPW-TFN---PLLLLNCLKNLRNQ--GSVYAPSFDHGVGD  215 (270)
Q Consensus       150 ------~~g~~i~-~dg~~~~~~~l~~~~~~-~~~~~~~g~~~-~~~---~~~~~~~l~~l~~~--~~~~~~~~S~g~~~  215 (270)
                            ..|.+-. +...+  ..+..+.+-. .-...-.|+.+ ..+   ......+++.+...  .+.....+|-|+++
T Consensus       101 ~~elrk~IG~vS~~L~~~~--~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r  178 (257)
T COG1119         101 IFELRKRIGLVSSELHERF--RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR  178 (257)
T ss_pred             hHHHHHHhCccCHHHHhhc--ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence                  0111000 00000  0001111100 00112233322 222   23334556666654  35666799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEeccccch
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKETY  264 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~~~  264 (270)
                      |+-+++++..+|++||+|||+.++|-..++.+.+.++         ..+||+|..++.
T Consensus       179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi  236 (257)
T COG1119         179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI  236 (257)
T ss_pred             HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc
Confidence            9999999999999999999999999988877777666         249999988654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.3e-22  Score=179.25  Aligned_cols=178  Identities=16%  Similarity=0.137  Sum_probs=118.6

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK-  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~-  147 (270)
                      ++.++++|+++.|++..    +|+|+||++++|+++||+|+||||||||+++|+|++.   |+     .|++ +++... 
T Consensus         5 ~~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~   77 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY   77 (261)
T ss_pred             cceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhh
Confidence            45799999999997532    6799999999999999999999999999999999984   43     4542 222110 


Q ss_pred             --C------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC------CCcCCCCCCcc
Q 024225          148 --P------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (270)
Q Consensus       148 --~------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g  212 (270)
                        .      .....+++.+.. ++.  .+..++........+. +.........++++.+.+.      .+..+..+|+|
T Consensus        78 ~~~~~~~~~~~~i~~~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  154 (261)
T PRK14258         78 ERRVNLNRLRRQVSMVHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG  154 (261)
T ss_pred             ccccchHHhhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence              0      011222333322 111  2333333222112222 1111122345566666542      23455689999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      |+||++++.++..+++++|+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~  212 (261)
T PRK14258        155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH  212 (261)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            99999999999999999999999999999887777776653        267777764

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.88  E-value=8.1e-23  Score=177.48  Aligned_cols=166  Identities=16%  Similarity=0.156  Sum_probs=114.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~  151 (270)
                      ++++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.   |+.|++ +++....     ...
T Consensus         1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03300           1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP   73 (232)
T ss_pred             CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence            35789999997632    6799999999999999999999999999999999995   777873 3332110     111


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++..+.....  .++..++........+............+++.+++..  +..+..+|+|++||++++.++..++++
T Consensus        74 i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l  151 (232)
T cd03300          74 VNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV  151 (232)
T ss_pred             eEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            222444433211  1333333322222222111111233456666666653  445678999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +|+|||+..+|...++.+.+++.
T Consensus       152 lllDEP~~gLD~~~~~~l~~~l~  174 (232)
T cd03300         152 LLLDEPLGALDLKLRKDMQLELK  174 (232)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHH
Confidence            99999999999988888876664

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=1.5e-22  Score=196.65  Aligned_cols=174  Identities=16%  Similarity=0.078  Sum_probs=124.7

Q ss_pred             ceEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceE
Q 024225           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (270)
Q Consensus        76 ~~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~  153 (270)
                      ++++++||++.|+ +..    +|+|+||+|++|+++||+||||||||||+++|+|++.   |++|++ ++..   ...| 
T Consensus         5 ~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~-   73 (556)
T PRK11819          5 YIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG-   73 (556)
T ss_pred             EEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE-
Confidence            4799999999997 422    6799999999999999999999999999999999985   888885 3321   1223 


Q ss_pred             EeecCCCCccccccCcccChHHHHHh--------------cCCCCC---------------------cc-HHHHHHHHHh
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------FN-PLLLLNCLKN  197 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~--------------~g~~~~---------------------~~-~~~~~~~l~~  197 (270)
                      +++++....  +.+++.++..+....              .+....                     ++ ...+.++++.
T Consensus        74 ~v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  151 (556)
T PRK11819         74 YLPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA  151 (556)
T ss_pred             EEecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence            355554321  124555544321110              011100                     00 1234455666


Q ss_pred             hccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       198 l~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      +++. .+..+..||+||+||+.++.++..++++||+|||+..||+...+.+.+++..    .|+++|+.+
T Consensus       152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~  221 (556)
T PRK11819        152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRY  221 (556)
T ss_pred             CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6553 2456679999999999999999999999999999999999888888887774    477888764

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.88  E-value=3.1e-22  Score=170.81  Aligned_cols=168  Identities=16%  Similarity=0.125  Sum_probs=114.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---  148 (270)
                      ..++++++++.|+...  ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .   
T Consensus         5 ~~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   79 (207)
T cd03369           5 GEIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED   79 (207)
T ss_pred             CeEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence            4588999999997521  127799999999999999999999999999999999984   677763 332110   0   


Q ss_pred             -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCC
Q 024225          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                       .....++.++.. +..  .+..++       ..+...+....+.+.++     ...++..+|+|++||+++++++..++
T Consensus        80 ~~~~i~~v~q~~~-~~~--~tv~~~-------l~~~~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p  144 (207)
T cd03369          80 LRSSLTIIPQDPT-LFS--GTIRSN-------LDPFDEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRP  144 (207)
T ss_pred             HHhhEEEEecCCc-ccC--ccHHHH-------hcccCCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence             011122344332 111  122221       11111122222233332     24456799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~  186 (207)
T cd03369         145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRT  186 (207)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            99999999999999888777777763      2677777654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.88  E-value=1.5e-22  Score=177.71  Aligned_cols=181  Identities=17%  Similarity=0.144  Sum_probs=117.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      +++++++|++.|++..    +|+++||++++||++||+|+||||||||+++|+|+.. +.|++|++ +++...   .+  
T Consensus         6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T CHL00131          6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA-YKILEGDILFKGESILDLEPEE   80 (252)
T ss_pred             ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc-CcCCCceEEECCEEcccCChhh
Confidence            4689999999997532    7799999999999999999999999999999999731 12778873 333211   01  


Q ss_pred             --Cc-eEEeecCCCCccccccCcccChHHHHHhc----CCCCCc---cHHHHHHHHHhhccCC---CcCCC-CCCcccCC
Q 024225          150 --DV-ATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQG---SVYAP-SFDHGVGD  215 (270)
Q Consensus       150 --~~-g~~i~~dg~~~~~~~l~~~~~~~~~~~~~----g~~~~~---~~~~~~~~l~~l~~~~---~~~~~-~~S~g~~~  215 (270)
                        .. ..++.++....  ..++..++........    +.....   ....+.+.++.+++..   +..+. .+|+|++|
T Consensus        81 ~~~~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q  158 (252)
T CHL00131         81 RAHLGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK  158 (252)
T ss_pred             hheeeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence              01 11133332211  1112222111111000    000000   0123455667666642   34444 49999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      |+.++.++..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~  213 (252)
T CHL00131        159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL  213 (252)
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            9999999999999999999999999988877777665       23777777653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.88  E-value=7e-23  Score=182.15  Aligned_cols=176  Identities=14%  Similarity=0.084  Sum_probs=118.0

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------Cccc-CCCCCCC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASS-FDSQVKP  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~--------~G~~-~~~~~~~  148 (270)
                      ++++|+++.|++..    +|+++||+|++|++++|+||||||||||+++|+|++.   |+        +|++ +++....
T Consensus         2 l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~~   74 (272)
T PRK13547          2 LTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPLA   74 (272)
T ss_pred             eEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEcc
Confidence            78899999997633    6799999999999999999999999999999999985   55        6763 3332110


Q ss_pred             ---C----CceEEeecCCCCccccccCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCC
Q 024225          149 ---P----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (270)
Q Consensus       149 ---p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~----g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~  215 (270)
                         +    ....+++++....+.  ++..++........    +.....+......+++.+++..  +..+..+|+|++|
T Consensus        75 ~~~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  152 (272)
T PRK13547         75 AIDAPRLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA  152 (272)
T ss_pred             cCCHHHHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence               0    011224444322111  33333222110000    1000112233456666666543  4556799999999


Q ss_pred             hhhhhhhhc---------cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225          216 PVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~---------~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~  262 (270)
                      |+.++.++.         .+++++|+|||+..+|...++.+.+++..        .|+++|+.+
T Consensus       153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~  216 (272)
T PRK13547        153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN  216 (272)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            999999998         48999999999999999888877776651        267777764

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=177.29  Aligned_cols=180  Identities=16%  Similarity=0.096  Sum_probs=120.0

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCccc-CCCCCCC---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASS-FDSQVKP---  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~---~~G~~-~~~~~~~---  148 (270)
                      ++++++||++.|+...    +++++||++.+|+++||+||||||||||+++|+|++.. .|   ++|++ +++....   
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence            3589999999997522    67999999999999999999999999999999998620 12   47773 3332110   


Q ss_pred             ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCc-cHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~  215 (270)
                            .....++.++... +.  .+..++........+..... ......+.++.+...      .+..+..+|+||+|
T Consensus        79 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q  155 (252)
T PRK14255         79 EDVVQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ  155 (252)
T ss_pred             ccHHHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence                  0112224444322 11  24444443322222321110 112234445555432      23456789999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      |++++.++..+++++|+|||+..+|....+.+.+++.      ..|+++|+.+.
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~  209 (252)
T PRK14255        156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ  209 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence            9999999999999999999999999988777777665      23777777653

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.8e-22  Score=177.11  Aligned_cols=180  Identities=13%  Similarity=0.087  Sum_probs=118.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~--~~~G~~-~~~~~~~----  148 (270)
                      .+++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++....  +++|++ +++....    
T Consensus         2 ~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   77 (250)
T PRK14266          2 YRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV   77 (250)
T ss_pred             cEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence            3588999999997522    6799999999999999999999999999999999863111  367773 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           .....++.++... +.  .+..++........+... ......+.+.++.+.+.      .+..+..+|+|++||
T Consensus        78 ~~~~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr  154 (250)
T PRK14266         78 DVVELRKKVGMVFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQR  154 (250)
T ss_pred             cHHHHhhheEEEecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHH
Confidence                 0112224444321 11  133333322111112110 01112234445554432      234567899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +.++.++..+++++++|||+..+|...++.+.+++..      .|+++|+.+
T Consensus       155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~  206 (250)
T PRK14266        155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ  206 (250)
T ss_pred             HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence            9999999999999999999999999888888777762      367777664

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.87  E-value=2.1e-22  Score=174.17  Aligned_cols=183  Identities=15%  Similarity=0.111  Sum_probs=118.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CCc
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PDV  151 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~~  151 (270)
                      ++.++||++.|++......+++|+||++++||+++|+||||||||||+++|+|++....|++|++ +++....    ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            46788999999763111337799999999999999999999999999999999982111467763 3332111    111


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCC---CccHHHHHH-HHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~---~~~~~~~~~-~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      ..++.++....  +.++..++..+.....+...   ......... .++.+...  .+..+..+|+|++||++++.++..
T Consensus        83 i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  160 (226)
T cd03234          83 VAYVRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW  160 (226)
T ss_pred             EEEeCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence            22244433221  12344444433221111110   001112223 55555544  234567999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK  261 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~  261 (270)
                      +++++|+|||+..+|...++.+.+++.+       .|+++|+.
T Consensus       161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~  203 (226)
T cd03234         161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP  203 (226)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            9999999999999999888777777752       25666664

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.87  E-value=1.1e-22  Score=174.47  Aligned_cols=168  Identities=15%  Similarity=0.162  Sum_probs=114.9

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----------C
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----------P  149 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----------p  149 (270)
                      +|+|.|++..    +  |+||++++ ++++|+||||||||||+++|+|++.   |++|++ +++....           .
T Consensus         5 ~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~   74 (214)
T cd03297           5 DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQ   74 (214)
T ss_pred             eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHh
Confidence            8999998732    3  99999999 9999999999999999999999985   888883 3332110           0


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....++.++... + ..++..++........  ..........++++.+++..  +..+..+|+||+||+.++.++..++
T Consensus        75 ~~i~~~~q~~~~-~-~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  150 (214)
T cd03297          75 RKIGLVFQQYAL-F-PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP  150 (214)
T ss_pred             hcEEEEecCCcc-C-CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence            112224444321 1 1133333332211111  11112234566777776653  4566799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      +++|+|||+..+|...++.+.+++..        .|+++|+.+.
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  194 (214)
T cd03297         151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE  194 (214)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence            99999999999999887777776641        2677776643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=1.4e-22  Score=175.33  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=107.6

Q ss_pred             ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccc------
Q 024225           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ------  166 (270)
Q Consensus        93 ~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~------  166 (270)
                      -+.++.|+||+|++|+++|++|+|||||||++|+|.|++                .|+.|. +...|++.++.+      
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll----------------~p~~G~-v~V~G~~Pf~~~~~~~~~   98 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL----------------LPTSGK-VRVNGKDPFRRREEYLRS   98 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc----------------ccCCCe-EEecCcCcchhHHHHHHH
Confidence            366889999999999999999999999999999999999                566666 666666544311      


Q ss_pred             --------------cCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEE
Q 024225          167 --------------LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (270)
Q Consensus       167 --------------l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~il  230 (270)
                                    ++..+.....+..+.++.+...++...+.+-+.++.  ......+|-||+.|+.++.++..++++|
T Consensus        99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL  178 (325)
T COG4586          99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL  178 (325)
T ss_pred             HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE
Confidence                          112222222333444444433444445555555653  4455699999999999999999999999


Q ss_pred             EEeCCCCCCChhhHHHHHHhhc
Q 024225          231 IVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       231 Ild~~~~~lDe~~~~~l~~~~~  252 (270)
                      ++|||+++||-..+..++++++
T Consensus       179 fLDEpTvgLDV~aq~~ir~Flk  200 (325)
T COG4586         179 FLDEPTVGLDVNAQANIREFLK  200 (325)
T ss_pred             EecCCccCcchhHHHHHHHHHH
Confidence            9999999999999999999888

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.87  E-value=1.3e-22  Score=176.49  Aligned_cols=175  Identities=13%  Similarity=0.117  Sum_probs=119.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDV  151 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~  151 (270)
                      ++++|+++.|++ .    +++++||++++||+++|+||||||||||+++|+|++.   |++|++ +++....     ...
T Consensus         1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~   72 (235)
T cd03299           1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD   72 (235)
T ss_pred             CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence            357899999974 2    5799999999999999999999999999999999985   888883 3332110     112


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      ..++..+....  ..++..++........+...........++++.+++..  +..+..+|+|++||++++.++..++++
T Consensus        73 i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  150 (235)
T cd03299          73 ISYVPQNYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI  150 (235)
T ss_pred             EEEEeecCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            23345443322  12344444433222222211111223456677766653  445679999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      +++|||+..+|....+.+.+++.        ..|.++|+.+
T Consensus       151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~  191 (235)
T cd03299         151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE  191 (235)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            99999999999977766666554        2266666654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.87  E-value=8.7e-23  Score=195.91  Aligned_cols=178  Identities=16%  Similarity=0.146  Sum_probs=121.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCCC-----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVKP-----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~~-----  148 (270)
                      +++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |  ++|++ +++....     
T Consensus         1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence            378899999997532    6799999999999999999999999999999999984   4  57774 3332110     


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhc--C--CCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE  218 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~  218 (270)
                         .....++.++....  ..+++.++........  +  ...........++++.+++..   +..+..||+||+||++
T Consensus        74 ~~~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~  151 (500)
T TIGR02633        74 DTERAGIVIIHQELTLV--PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE  151 (500)
T ss_pred             HHHhCCEEEEeeccccC--CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence               01122344443211  1234433332211100  0  010111234566777777653   2346799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ++.++..+++++|+|||+..+|+...+.+.+++..       .|+++|+.+.
T Consensus       152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~  203 (500)
T TIGR02633       152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE  203 (500)
T ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence            99999999999999999999999888888877652       3777877643

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.6e-22  Score=180.28  Aligned_cols=178  Identities=12%  Similarity=0.079  Sum_probs=117.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC-C
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK-P  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~-~  148 (270)
                      ++++++||++.|++..    +++|+||++++||+++|+||||||||||+++|+|++.   |     ++|++ +++... .
T Consensus        20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~   92 (276)
T PRK14271         20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN   92 (276)
T ss_pred             cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence            4789999999998633    6799999999999999999999999999999999984   3     46663 333111 0


Q ss_pred             -------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCC------CcCCCCCCcccC
Q 024225          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVG  214 (270)
Q Consensus       149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~  214 (270)
                             .....++.++.. ++.  .+..++........+. ..........+.++.+++..      +..+..+|+||+
T Consensus        93 ~~~~~~~~~~i~~v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~  169 (276)
T PRK14271         93 YRDVLEFRRRVGMLFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ  169 (276)
T ss_pred             cchhHHHhhheEEeccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence                   011222333322 111  2333322221111111 10000112234455555432      234568999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ||++++.++..+++++|+|||+..+|....+.+.+++..      .|+++|+.+.
T Consensus       170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~  224 (276)
T PRK14271        170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQ  224 (276)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999999999999877777776652      3777777653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-22  Score=194.75  Aligned_cols=184  Identities=15%  Similarity=0.133  Sum_probs=123.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|+... ...+++|+||++++|+++||+||||||||||+|+|+|+++  .|++|++ +++....      
T Consensus       258 ~~l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~~~G~i~~~g~~~~~~~~~~  334 (506)
T PRK13549        258 VILEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP--GRWEGEIFIDGKPVKIRNPQQ  334 (506)
T ss_pred             ceEEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC--CCCCcEEEECCEECCCCCHHH
Confidence            4699999999995210 1226799999999999999999999999999999999983  1278874 3332110      


Q ss_pred             ---CCceEEeecCCC-CccccccCcccChHHHHH-hc-CC---CCCccHHHHHHHHHhhccC---CCcCCCCCCcccCCh
Q 024225          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-GA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~-~~-g~---~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~r  216 (270)
                         ...+ ++.++.. ......+++.++...... .+ +.   ........+.++++.+.+.   .+..+..+|+||+||
T Consensus       335 ~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr  413 (506)
T PRK13549        335 AIAQGIA-MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK  413 (506)
T ss_pred             HHHCCCE-EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence               1123 2444421 001112344443322110 11 10   0111123456778887764   245677999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +.++.++..++++||+|||+..+|+..++.+.+++.       ..|+++|+.+.
T Consensus       414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~  467 (506)
T PRK13549        414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE  467 (506)
T ss_pred             HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence            999999999999999999999999988888777765       23788888653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.2e-22  Score=186.92  Aligned_cols=169  Identities=11%  Similarity=0.111  Sum_probs=118.4

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---------C--C
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---------P--P  149 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---------~--p  149 (270)
                      ||+|.|++.     .+ ++||++++|++++|+||||||||||+++|+|+++   |++|++ +++...         .  .
T Consensus         4 ~l~~~~~~~-----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~   74 (354)
T TIGR02142         4 RFSKRLGDF-----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK   74 (354)
T ss_pred             EEEEEECCE-----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence            788999752     23 8999999999999999999999999999999986   888883 333211         0  0


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....++.++.. ++ +.+++.++..+.....  ........+.++++.+++..  +..+..+|+||+||++++.++..++
T Consensus        75 ~~i~~v~q~~~-l~-~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p  150 (354)
T TIGR02142        75 RRIGYVFQEAR-LF-PHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP  150 (354)
T ss_pred             CCeEEEecCCc-cC-CCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            11223444432 21 2245555443322111  11111234567777777653  5567799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      +++|+|||+..+|...++.+.+++..        .|+++|+.+.
T Consensus       151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~  194 (354)
T TIGR02142       151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE  194 (354)
T ss_pred             CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            99999999999999877766666542        3788888754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.87  E-value=1.1e-22  Score=196.61  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=127.1

Q ss_pred             ceEEeccchhhhhhhh-------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC
Q 024225           76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~-------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~  147 (270)
                      ++++++||++.|+...       ....+|+++||++++|+++||+||||||||||+|+|+|++    +++|++ +++...
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i  349 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL  349 (529)
T ss_pred             CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence            4699999999996210       0123679999999999999999999999999999999997    678884 444211


Q ss_pred             ---C-------CCceEEeecCCCCccccccCcccChHHHHHhcC--CCCCccHHHHHHHHHhhccC---CCcCCCCCCcc
Q 024225          148 ---P-------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (270)
Q Consensus       148 ---~-------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g--~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g  212 (270)
                         .       .....+++++........+++.++........+  ...........++++.+++.   .+..+..||+|
T Consensus       350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  429 (529)
T PRK15134        350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG  429 (529)
T ss_pred             cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence               0       011233566542111122455554433222111  11111223456777777764   24567799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----c----ceEEeccccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KCYATSFKET  263 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~----~i~v~~~~~~  263 (270)
                      |+||+.++.++..++++||+|||+..+|...++.+.+++.    .    .|+++|+.+.
T Consensus       430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~  488 (529)
T PRK15134        430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV  488 (529)
T ss_pred             HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence            9999999999999999999999999999987777777765    2    3788887643

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.87  E-value=1.5e-22  Score=175.90  Aligned_cols=170  Identities=15%  Similarity=0.133  Sum_probs=107.2

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C-----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P-----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p-----  149 (270)
                      ++++|+++.|++..   .+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....  +     
T Consensus         1 l~~~~l~~~~~~~~---~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~   74 (236)
T cd03253           1 IEFENVTFAYDPGR---PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR   74 (236)
T ss_pred             CEEEEEEEEeCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence            35789999996311   26799999999999999999999999999999999984   666663 3221100  0     


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHH---------HHHhhccC----CCcCCCCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQ----GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~~~----~~~~~~~~S~g~~~r  216 (270)
                      ....++..+... +.  .+..++.     .++... ........         .++.+..+    ....+..+|+|++||
T Consensus        75 ~~i~~~~q~~~~-~~--~tv~~nl-----~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r  145 (236)
T cd03253          75 RAIGVVPQDTVL-FN--DTIGYNI-----RYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR  145 (236)
T ss_pred             hhEEEECCCChh-hc--chHHHHH-----hhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence            001113333211 11  1221111     111111 11111111         11222111    122356899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++++.++..+|+++|+|||+..+|+..++.+.+++..      .|+++|+.+
T Consensus       146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~  197 (236)
T cd03253         146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS  197 (236)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence            9999999999999999999999999888877777752      356666654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.87  E-value=1.9e-22  Score=174.93  Aligned_cols=164  Identities=15%  Similarity=0.105  Sum_probs=108.4

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCccc-CCCCCCCC-----CceEEeecCCCCcccc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASS-FDSQVKPP-----DVATVLPMDGFHLYLS  165 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~----~~G~~-~~~~~~~p-----~~g~~i~~dg~~~~~~  165 (270)
                      +++|+||++++|++++|+||||||||||+++|+|+++   |    ++|++ +++.....     ....++.++.......
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~   77 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP   77 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence            4689999999999999999999999999999999985   6    67774 33321100     1122244443211111


Q ss_pred             ccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-----CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCC
Q 024225          166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (270)
Q Consensus       166 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lD  240 (270)
                      .++..++........+.........+.++++.+.+.     .+..+..+|+|++||++++.++..+++++|+|||+..+|
T Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD  157 (230)
T TIGR02770        78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD  157 (230)
T ss_pred             ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence            123322222222222322111223456677777664     244567899999999999999999999999999999999


Q ss_pred             hhhHHHHHHhhc--------cceEEecccc
Q 024225          241 GGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       241 e~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      ...++.+.+++.        ..|+++|+.+
T Consensus       158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~  187 (230)
T TIGR02770       158 VVNQARVLKLLRELRQLFGTGILLITHDLG  187 (230)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            977666665554        1367777664

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.7e-22  Score=195.25  Aligned_cols=172  Identities=12%  Similarity=0.114  Sum_probs=124.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++.   ...+ +
T Consensus       318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~-~  386 (530)
T PRK15064        318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIG-Y  386 (530)
T ss_pred             ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEE-E
Confidence            4699999999997633    6799999999999999999999999999999999985   777774 3321   1122 2


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      +.++........++..++..    .+. ..........++++.+++.   .+..+..+|+||+||++++.++..+++++|
T Consensus       387 ~~q~~~~~~~~~~t~~~~~~----~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll  461 (530)
T PRK15064        387 YAQDHAYDFENDLTLFDWMS----QWR-QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV  461 (530)
T ss_pred             EcccccccCCCCCcHHHHHH----Hhc-cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            44432111111123322211    111 1112234566778887763   256778999999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhcc----ceEEeccccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFDE----KCYATSFKET  263 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~~  263 (270)
                      +|||+..||....+.+.+++..    .|+++||.+.
T Consensus       462 LDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~  497 (530)
T PRK15064        462 MDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREF  497 (530)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            9999999999888888887774    4788887753

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.87  E-value=1.7e-22  Score=172.03  Aligned_cols=166  Identities=13%  Similarity=0.099  Sum_probs=108.0

Q ss_pred             EEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEe
Q 024225           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (270)
Q Consensus        78 l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i  155 (270)
                      ++++||++.|++..+ ...+++++||++++|++++|+||||||||||+++|+|+++   |++|++ +++     ..+ ++
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~-~~   71 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIA-YV   71 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEE-EE
Confidence            467899999976310 0126799999999999999999999999999999999984   666653 222     112 23


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------C----CCcCCCCCCcccCChhhhhhh
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~~S~g~~~rv~~~~~  222 (270)
                      ..+... ..  .+..++.       -+...+......+.++.+..         +    .......+|+|++||++++.+
T Consensus        72 ~q~~~l-~~--~t~~enl-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara  141 (204)
T cd03250          72 SQEPWI-QN--GTIRENI-------LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA  141 (204)
T ss_pred             ecCchh-cc--CcHHHHh-------ccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence            333321 11  2222211       11111111222222222111         1    123456899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHH-hhc-------cceEEecccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD-------EKCYATSFKE  262 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~-~~~-------~~i~v~~~~~  262 (270)
                      +..+++++|+|||+..+|...++.+.+ ++.       ..|+++|+.+
T Consensus       142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~  189 (204)
T cd03250         142 VYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ  189 (204)
T ss_pred             HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence            999999999999999999987776655 332       2267777654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.3e-22  Score=193.39  Aligned_cols=177  Identities=13%  Similarity=0.068  Sum_probs=122.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      ++++++|+++.|+.      +++|+||++++|+++||+||||||||||+|+|+|+++   |++|++ +++....   +  
T Consensus       264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~  334 (510)
T PRK09700        264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD  334 (510)
T ss_pred             cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence            46999999997632      6799999999999999999999999999999999985   888884 4442111   1  


Q ss_pred             ---CceEEeecCC--CCccccccCcccChHHHHHh--------cCC-CCCccHHHHHHHHHhhccC---CCcCCCCCCcc
Q 024225          150 ---DVATVLPMDG--FHLYLSQLDAMEDPKEAHAR--------RGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (270)
Q Consensus       150 ---~~g~~i~~dg--~~~~~~~l~~~~~~~~~~~~--------~g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g  212 (270)
                         ....+++++.  ..+. +.+++.++.......        ++. ..........++++.+++.   .+..+..||+|
T Consensus       335 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  413 (510)
T PRK09700        335 AVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG  413 (510)
T ss_pred             HHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence               1122244442  1111 123443332211100        011 0001112345777777764   34567799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      |+||+.++.++..++++||+|||+..||+..++.+.++++.       .|+++||.+
T Consensus       414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~  470 (510)
T PRK09700        414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP  470 (510)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            99999999999999999999999999999888888888752       378888764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.87  E-value=1.6e-22  Score=194.98  Aligned_cols=182  Identities=17%  Similarity=0.194  Sum_probs=126.2

Q ss_pred             ceEEeccchhhhhhh-hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CC-CC-C---C-
Q 024225           76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD-SQ-V---K-  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~-~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~-~~-~---~-  147 (270)
                      ++++++||++.|++. .....+++|+||++++|+++||+||||||||||+|+|+|++.   |++|++ ++ +. .   . 
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~~  354 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMTK  354 (520)
T ss_pred             ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCccccccc
Confidence            479999999999531 011236799999999999999999999999999999999985   888884 32 21 0   0 


Q ss_pred             -C-------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-------CcCCCCCCcc
Q 024225          148 -P-------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFDHG  212 (270)
Q Consensus       148 -~-------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~S~g  212 (270)
                       .       .....++.++.. +. ..+++.++...... .+...........++++.+.+..       +.++..+|+|
T Consensus       355 ~~~~~~~~~~~~i~~v~q~~~-l~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgG  431 (520)
T TIGR03269       355 PGPDGRGRAKRYIGILHQEYD-LY-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEG  431 (520)
T ss_pred             cchhhHHHHhhhEEEEccCcc-cC-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHH
Confidence             0       011223555432 11 22444444432211 12111111234556777777743       4567799999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      |+||++++.++..++++||+|||+..+|....+.+.+++.        ..|+++|+.+.
T Consensus       432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  490 (520)
T TIGR03269       432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF  490 (520)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence            9999999999999999999999999999988888877773        23788888754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.6e-22  Score=181.29  Aligned_cols=181  Identities=15%  Similarity=0.114  Sum_probs=119.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC-C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK-P---  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~-~---  148 (270)
                      ++++++||++.|++..    +|+++||++++|++++|+|+||||||||+++|+|+++..  +|++|++ +++... .   
T Consensus        44 ~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         44 AKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             ceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            4689999999997633    779999999999999999999999999999999997311  2467773 333110 0   


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcC------------CCC-CccHHHHHHHHHhhccC------CCc
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRNQ------GSV  204 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g------------~~~-~~~~~~~~~~l~~l~~~------~~~  204 (270)
                           .....++.++.. ++.  .++.++........+            ... ......+.++++.+.+.      .+.
T Consensus       120 ~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  196 (305)
T PRK14264        120 NLVELRKRVGMVFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD  196 (305)
T ss_pred             cHHHHhhceEEEccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence                 011222333322 111  233333322111111            000 00112344555555442      134


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      .+..+|+|++||+.++.++..++++||+|||+..||...++.+.+++..      .|+++|+.+.
T Consensus       197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~  261 (305)
T PRK14264        197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ  261 (305)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence            5678999999999999999999999999999999999888877777762      3677777644

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.87  E-value=2.9e-22  Score=197.38  Aligned_cols=174  Identities=13%  Similarity=0.033  Sum_probs=117.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      ++++++||++.|++..    +|+|+||+|++|+++||+||||||||||+|+|+|++.   |++|++ +++..   ..+. 
T Consensus         2 ~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~-   70 (635)
T PRK11147          2 SLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR-   70 (635)
T ss_pred             cEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE-
Confidence            4799999999998633    6799999999999999999999999999999999984   666653 22210   0011 


Q ss_pred             eecCCCCccccccCcccCh------------------------------HHHH---HhcCC-CCCccHHHHHHHHHhhcc
Q 024225          155 LPMDGFHLYLSQLDAMEDP------------------------------KEAH---ARRGA-PWTFNPLLLLNCLKNLRN  200 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~------------------------------~~~~---~~~g~-~~~~~~~~~~~~l~~l~~  200 (270)
                      +.++..  ........+..                              ....   ..+.. ........+..+++.+++
T Consensus        71 l~q~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl  148 (635)
T PRK11147         71 LQQDPP--RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL  148 (635)
T ss_pred             eccCCC--CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence            111100  00000000000                              0000   00000 000112345667777777


Q ss_pred             CCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       201 ~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      ..+..+..||+|+++|++++.++..+|++||+|||+..||....+.+.+++..    .|+|+||.+
T Consensus       149 ~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~  214 (635)
T PRK11147        149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRS  214 (635)
T ss_pred             CCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            55667789999999999999999999999999999999999988888888863    377777753

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.87  E-value=1.8e-22  Score=175.19  Aligned_cols=160  Identities=16%  Similarity=0.130  Sum_probs=110.0

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CCCceEEeecCCCCccccccCcccC
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDVATVLPMDGFHLYLSQLDAMED  172 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p~~g~~i~~dg~~~~~~~l~~~~~  172 (270)
                      ++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .+..+ ++.++.....  .+++.++
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~-~v~q~~~l~~--~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRM-VVFQNYSLLP--WLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhhe-EEecCcccCC--CCCHHHH
Confidence            478999999999999999999999999999999985   788884 333211   11223 3454432211  1344444


Q ss_pred             hHHHHHh--cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHH
Q 024225          173 PKEAHAR--RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (270)
Q Consensus       173 ~~~~~~~--~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~  248 (270)
                      .......  .+.........+.++++.+++..  +..+..+|+|++||+.++.++..+++++|+|||+..+|...++.+.
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  154 (230)
T TIGR01184        75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ  154 (230)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            4332111  11111111223456677666643  4556789999999999999999999999999999999998888777


Q ss_pred             Hhhcc--------ceEEecccc
Q 024225          249 SMFDE--------KCYATSFKE  262 (270)
Q Consensus       249 ~~~~~--------~i~v~~~~~  262 (270)
                      +++..        .|+++|+.+
T Consensus       155 ~~l~~~~~~~~~tii~~sH~~~  176 (230)
T TIGR01184       155 EELMQIWEEHRVTVLMVTHDVD  176 (230)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH
Confidence            76652        267777764

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.4e-22  Score=176.91  Aligned_cols=180  Identities=14%  Similarity=0.074  Sum_probs=119.4

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK  147 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~  147 (270)
                      ....++++|+++.|++..    +++|+||++++||+++|+|+||||||||+++|+|++.   |     ++|++ +++...
T Consensus        13 ~~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~   85 (265)
T PRK14252         13 TQQKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNV   85 (265)
T ss_pred             CCceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccc
Confidence            345699999999997532    7799999999999999999999999999999999974   3     56763 333111


Q ss_pred             C-----------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCC
Q 024225          148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSF  209 (270)
Q Consensus       148 ~-----------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~  209 (270)
                      .           .....++..+...+ .  .+..++........+... ........+.++.+...      .+..+..+
T Consensus        86 ~~~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  162 (265)
T PRK14252         86 NILSPEVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL  162 (265)
T ss_pred             cccccccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence            0           01112244333211 1  133333322221122211 11112334445544432      13455689


Q ss_pred             CcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       210 S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+|++||+.++.++..+++++|+|||+..+|...++.+.+++..      .|+++|+.+.
T Consensus       163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~  222 (265)
T PRK14252        163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQ  222 (265)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence            99999999999999999999999999999999888777777762      3677777644

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.3e-22  Score=194.31  Aligned_cols=172  Identities=13%  Similarity=0.098  Sum_probs=121.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEee
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLP  156 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~  156 (270)
                      ++++||++.|++..    +|+++||++++|+++||+||||||||||+|+|+|++.   |++|++ +++.   ...+ ++.
T Consensus         2 l~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~-~~~   70 (530)
T PRK15064          2 LSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLG-KLR   70 (530)
T ss_pred             EEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE-EEe
Confidence            78999999997633    6799999999999999999999999999999999985   777774 3331   1223 244


Q ss_pred             cCCCCccccccCcccChHHHHH-----------hcCCCC---------------------CccHHHHHHHHHhhccCC--
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG--  202 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~-----------~~g~~~---------------------~~~~~~~~~~l~~l~~~~--  202 (270)
                      ++....  ..+++.++......           ..+.+.                     ......+.++++.+++..  
T Consensus        71 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~  148 (530)
T PRK15064         71 QDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ  148 (530)
T ss_pred             ccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence            443211  11333332221100           000000                     001134456777777653  


Q ss_pred             -CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       203 -~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                       +..+..||+||+||++++.++..+|++|++|||+..||+...+.+.+++..    .|+++|+.+
T Consensus       149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~  213 (530)
T PRK15064        149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRH  213 (530)
T ss_pred             hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence             234679999999999999999999999999999999999999999888874    367777764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.87  E-value=1.9e-22  Score=194.74  Aligned_cols=168  Identities=14%  Similarity=0.112  Sum_probs=111.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P----  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p----  149 (270)
                      .++++||++.|++..   .+|+|+||++++|+.++|+||||||||||+++|+|++.   |++|++ +++....  .    
T Consensus       334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence            489999999997532   26799999999999999999999999999999999994   555552 2221000  0    


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD  215 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~  215 (270)
                      ....+++++.+-...   +.       +.+..+ ....+.+.+.+.++..+.         |.+..    ...+||||+|
T Consensus       408 ~~i~~V~Q~~~lF~~---TI-------~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ  477 (529)
T TIGR02868       408 RRISVFAQDAHLFDT---TV-------RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ  477 (529)
T ss_pred             hheEEEccCcccccc---cH-------HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence            011224444432211   11       122222 112233444444443332         22222    2369999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSF  260 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~  260 (270)
                      |+++++++..+++++|+||++..+|+..-+.+.+.+.      ..|.|+|.
T Consensus       478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr  528 (529)
T TIGR02868       478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH  528 (529)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            9999999999999999999999999977777766664      23566654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.4e-22  Score=197.89  Aligned_cols=171  Identities=17%  Similarity=0.161  Sum_probs=122.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++||++.|++..    +|+|+||+|.+|+++||+||||||||||+|+|+|++.   |++|++.-+.  .-..| ++
T Consensus       311 ~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--~~~ig-y~  380 (638)
T PRK10636        311 PLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAK--GIKLG-YF  380 (638)
T ss_pred             ceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECC--CEEEE-Ee
Confidence            4799999999997633    6799999999999999999999999999999999985   7777743221  01122 23


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      .++....    ++..........  ..........+.++++.+.+..   +..+..+|+|+++|++++.++..++++||+
T Consensus       381 ~Q~~~~~----l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL  454 (638)
T PRK10636        381 AQHQLEF----LRADESPLQHLA--RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL  454 (638)
T ss_pred             cCcchhh----CCccchHHHHHH--HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3321110    111111111111  1111122345567788887742   456779999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      |||+..||....+.+.+++..    .|+|+||.+
T Consensus       455 DEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~  488 (638)
T PRK10636        455 DEPTNHLDLDMRQALTEALIDFEGALVVVSHDRH  488 (638)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            999999999988888888863    478888764

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=2.4e-22  Score=195.18  Aligned_cols=174  Identities=15%  Similarity=0.096  Sum_probs=125.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++||++.|++..    +|+|+||+|++|+++||+||||||||||+++|+|++.   |++|++..++  ....| ++
T Consensus       323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~--~~~i~-~v  392 (556)
T PRK11819        323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGE--TVKLA-YV  392 (556)
T ss_pred             eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC--ceEEE-EE
Confidence            4699999999997633    7799999999999999999999999999999999985   7888753232  11223 35


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      .++...+ ...+++.++........+..  ........+++.+++.   .+..+..||+||+||+.++.++..+++++|+
T Consensus       393 ~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  469 (556)
T PRK11819        393 DQSRDAL-DPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL  469 (556)
T ss_pred             eCchhhc-CCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            5543111 12244444333221111111  1122344677777764   2456779999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      |||+..+|....+.+.+++..    .|+++||.+
T Consensus       470 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~  503 (556)
T PRK11819        470 DEPTNDLDVETLRALEEALLEFPGCAVVISHDRW  503 (556)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            999999999888888887764    377777764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.1e-22  Score=197.11  Aligned_cols=172  Identities=16%  Similarity=0.065  Sum_probs=118.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEe
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i  155 (270)
                      +|+++||++.|++..    +|+|+||+|++|+++||+||||||||||+|+|+|++.   |++|++ +++..   ..+. +
T Consensus         1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~-~   69 (638)
T PRK10636          1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAW-V   69 (638)
T ss_pred             CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEE-E
Confidence            378999999998743    6799999999999999999999999999999999884   677764 23210   1111 2


Q ss_pred             ecCCCCccccccCcccChH-----------------------HH---HHhcC-CCCCccHHHHHHHHHhhccC---CCcC
Q 024225          156 PMDGFHLYLSQLDAMEDPK-----------------------EA---HARRG-APWTFNPLLLLNCLKNLRNQ---GSVY  205 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~-----------------------~~---~~~~g-~~~~~~~~~~~~~l~~l~~~---~~~~  205 (270)
                      .++.....   .+......                       ..   ...+. .........+..+++.+++.   .+..
T Consensus        70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~  146 (638)
T PRK10636         70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP  146 (638)
T ss_pred             ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence            22211100   01000000                       00   00000 00011123456778888774   2456


Q ss_pred             CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      +..||+|+++|++++.++..+|++||+|||+..||......+.+++..    .|+|+||.+
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~  207 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRD  207 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            779999999999999999999999999999999999888888888763    477887763

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.5e-22  Score=166.51  Aligned_cols=145  Identities=17%  Similarity=0.231  Sum_probs=108.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      +++++||+|.|++..    +++++|++|++|.+.+|+||||||||||+.++++++                +.+.|. +.
T Consensus         1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~----------------~~d~G~-i~   59 (252)
T COG4604           1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL----------------KKDSGE-IT   59 (252)
T ss_pred             CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhc----------------cccCce-EE
Confidence            468899999999854    779999999999999999999999999999999999                566777 77


Q ss_pred             cCCCCccccc--------------------cCcccChHHHH--HhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcc
Q 024225          157 MDGFHLYLSQ--------------------LDAMEDPKEAH--ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG  212 (270)
Q Consensus       157 ~dg~~~~~~~--------------------l~~~~~~~~~~--~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g  212 (270)
                      +||..+....                    +++.+...+.+  --.|-+...|..-+.+.++.+.+.  .+.+..++|||
T Consensus        60 i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGG  139 (252)
T COG4604          60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGG  139 (252)
T ss_pred             EeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccc
Confidence            7777654310                    11111100000  001112223444556666666654  46788899999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~  242 (270)
                      |+||...+..+..+.+.+++|||..-||-.
T Consensus       140 QrQRAfIAMVlaQdTdyvlLDEPLNNLDmk  169 (252)
T COG4604         140 QRQRAFIAMVLAQDTDYVLLDEPLNNLDMK  169 (252)
T ss_pred             hhhhhhhheeeeccCcEEEecCcccccchH
Confidence            999999999999999999999999999974

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=4.9e-22  Score=163.16  Aligned_cols=175  Identities=14%  Similarity=0.140  Sum_probs=125.8

Q ss_pred             cceEEeccchhhhhhhh-----cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC
Q 024225           75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK  147 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~-----~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~  147 (270)
                      +++++++|++|.|....     ..+.+++.|||++++|+.+||+|.||||||||+|+|+|.+.   |++|++ ++++ ..
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~   78 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH   78 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence            46789999999986432     34778899999999999999999999999999999999995   888883 3332 22


Q ss_pred             ------CCCceEEeecCCCCccccccCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChh
Q 024225          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       148 ------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv  217 (270)
                            +.....+|++|.....++.+..-+..+... ..-....+.....+.+.+..+++.   .+.++..++-|++||+
T Consensus        79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV  158 (267)
T COG4167          79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV  158 (267)
T ss_pred             ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence                  223445577776555444443322211111 111121112233455666777765   3577889999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ++++++.++|++||.|+....||...+-++..++-
T Consensus       159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L  193 (267)
T COG4167         159 ALARALILRPKIIIADEALASLDMSMRSQLINLML  193 (267)
T ss_pred             HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence            99999999999999999999999987777777655

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.1e-23  Score=196.11  Aligned_cols=175  Identities=14%  Similarity=0.085  Sum_probs=119.5

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------CC
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------PD  150 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------p~  150 (270)
                      ++||++.|++..    +++|+||++++|+++||+||||||||||+++|+|++.   |++|++ +++....        ..
T Consensus         1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~   73 (491)
T PRK10982          1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN   73 (491)
T ss_pred             CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence            468899997532    6799999999999999999999999999999999985   788884 4442111        01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHH-hcCC--CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~--~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      ...++.++.....  .+++.++...... ..+.  ..........++++.+++..  +..+..+|+||+||++++.++..
T Consensus        74 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~  151 (491)
T PRK10982         74 GISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY  151 (491)
T ss_pred             CEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence            1223555432211  1344333322110 0111  00011223456677666643  44567999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +++++|+|||+..+|...++.+.+++..       .|+++|+.+.
T Consensus       152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~  196 (491)
T PRK10982        152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE  196 (491)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            9999999999999999888888777642       3777877643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.87  E-value=2e-22  Score=193.42  Aligned_cols=181  Identities=13%  Similarity=0.089  Sum_probs=120.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCccc-CCCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASS-FDSQVKP-----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-~~G~~-~~~~~~~-----  148 (270)
                      ++++++|+++.|+.... ..+++++||++++||++||+||||||||||+|+|+|++.   | ++|++ +++....     
T Consensus       256 ~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~~  331 (500)
T TIGR02633       256 VILEARNLTCWDVINPH-RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNPA  331 (500)
T ss_pred             ceEEEeCCccccccccc-ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCHH
Confidence            36999999999942101 126799999999999999999999999999999999983   4 57773 3332110     


Q ss_pred             ----CCceEEeecCCC--CccccccCcccChHHHH-Hhc-C---CCCCccHHHHHHHHHhhccC---CCcCCCCCCcccC
Q 024225          149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAH-ARR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG  214 (270)
Q Consensus       149 ----p~~g~~i~~dg~--~~~~~~l~~~~~~~~~~-~~~-g---~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~  214 (270)
                          ...+. +.++..  .+ .+.+++.++..... ... .   .........+.++++.+.+.   .+..+..+|+||+
T Consensus       332 ~~~~~~i~~-v~q~~~~~~l-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  409 (500)
T TIGR02633       332 QAIRAGIAM-VPEDRKRHGI-VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ  409 (500)
T ss_pred             HHHhCCCEE-cCcchhhCCc-CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence                01222 443320  01 11123333222111 001 0   00011123456778877774   2456679999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ||++++.++..+++++|+|||+..||...++.+.++++.       .|+++||.+
T Consensus       410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~  464 (500)
T TIGR02633       410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA  464 (500)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            999999999999999999999999999888877766652       377788764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.87  E-value=2.9e-22  Score=194.44  Aligned_cols=174  Identities=16%  Similarity=0.103  Sum_probs=125.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++|+++.|++..    +|+++||+|++|+++||+||||||||||+++|+|++.   |++|++..+.  ....+ ++
T Consensus       321 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~--~~~i~-~v  390 (552)
T TIGR03719       321 KVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGE--TVKLA-YV  390 (552)
T ss_pred             eEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECC--ceEEE-EE
Confidence            4799999999997633    7799999999999999999999999999999999985   7888753222  11223 35


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      .++...+ ...+++.++........+..  ........+++.+++..   +..+..||+||+||++++.++..+++++|+
T Consensus       391 ~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL  467 (552)
T TIGR03719       391 DQSRDAL-DPNKTVWEEISGGLDIIQLG--KREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL  467 (552)
T ss_pred             eCCcccc-CCCCcHHHHHHhhccccccC--cchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            5543111 12244444332211111111  11223446777777642   456779999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      |||+..||....+.+.+++..    .|+++||.+
T Consensus       468 DEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~  501 (552)
T TIGR03719       468 DEPTNDLDVETLRALEEALLEFAGCAVVISHDRW  501 (552)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            999999999988888888874    377777764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.7e-22  Score=186.46  Aligned_cols=159  Identities=14%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|+... +  +|+++||+|++||.|||+|+|||||||++|+|.+++    .++|             . |.
T Consensus       351 ~I~F~dV~f~y~~k~-~--iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG-------------~-I~  409 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKR-K--VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSG-------------S-IL  409 (591)
T ss_pred             cEEEEeeEEEeCCCC-c--eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCC-------------c-EE
Confidence            389999999998632 2  569999999999999999999999999999999998    3444             4 55


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC-------------------C-------------C
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ-------------------G-------------S  203 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~-------------------~-------------~  203 (270)
                      +||.++....      .+..++.+|+ ||+. .-.-.+++.|++.|                   +             -
T Consensus       410 IdG~dik~~~------~~SlR~~Ig~VPQd~-~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VG  482 (591)
T KOG0057|consen  410 IDGQDIKEVS------LESLRQSIGVVPQDS-VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVG  482 (591)
T ss_pred             ECCeeHhhhC------hHHhhhheeEeCCcc-cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence            5555443211      1123333444 2211 11112333333322                   0             0


Q ss_pred             cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      -....+||||+||+++++++..+++++++||++.-+|.+.-.++.+++.      ..|+|-|+.+.
T Consensus       483 erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l  548 (591)
T KOG0057|consen  483 ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL  548 (591)
T ss_pred             hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh
Confidence            1234789999999999999999999999999999999987777777766      34888887754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.1e-22  Score=174.97  Aligned_cols=178  Identities=11%  Similarity=0.059  Sum_probs=118.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCC-C-----
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVK-P-----  148 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~-~-----  148 (270)
                      -+++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.  ...|++|++ +++... .     
T Consensus         6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            46789999997532    6799999999999999999999999999999999973  011357773 333211 0     


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccCC------CcCCCCCCcccCChh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDPV  217 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~rv  217 (270)
                         .....++.++... ..  .+..++..+.....+....  .......++++.+++..      +..+..+|+||+||+
T Consensus        82 ~~~~~~i~~v~q~~~~-~~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv  158 (251)
T PRK14244         82 VLLRAKVGMVFQKPNP-FP--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL  158 (251)
T ss_pred             HHHhhhEEEEecCccc-cc--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence               0112234544322 11  1333333222111221111  11123455667766532      235668999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +++.++..+++++|+|||+..+|...++.+.+.+..      .|+++|+.+
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~  209 (251)
T PRK14244        159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMK  209 (251)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            999999999999999999999999888877777752      367777764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.4e-21  Score=159.32  Aligned_cols=180  Identities=15%  Similarity=0.151  Sum_probs=122.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CC---CCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD---SQVK----  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~---~~~~----  147 (270)
                      |++++.+++|.|+...    ..++|||++.+||+.||+|+||||||||+++|++.+.   |+.|++ +.   ++..    
T Consensus         5 PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~~   77 (258)
T COG4107           5 PLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLYT   77 (258)
T ss_pred             cceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHhh
Confidence            6799999999999855    7799999999999999999999999999999999984   666652 11   1100    


Q ss_pred             ----------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhccCC---CcCCCCCCccc
Q 024225          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (270)
Q Consensus       148 ----------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~l~~~~---~~~~~~~S~g~  213 (270)
                                +-+-|. +.++..+=.+.+.++-.|..+.....|...--+ .......++.+....   +-.+..||+||
T Consensus        78 msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM  156 (258)
T COG4107          78 MSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM  156 (258)
T ss_pred             hchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence                      011122 333222222222233333333332223211011 122344566666553   23567999999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +||+.++..+...|+++++|||+.++|-..+.++.+++.        ..+.|+||..+
T Consensus       157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V  214 (258)
T COG4107         157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV  214 (258)
T ss_pred             HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH
Confidence            999999999999999999999999999999988888877        33678887743

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.86  E-value=6.6e-22  Score=191.98  Aligned_cols=173  Identities=16%  Similarity=0.049  Sum_probs=121.1

Q ss_pred             eEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        77 ~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      +++++||++.|+ +..    +|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++.   ...+ +
T Consensus         4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~-~   72 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKVG-Y   72 (552)
T ss_pred             EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE-E
Confidence            689999999997 422    6799999999999999999999999999999999985   888885 3321   1223 3


Q ss_pred             eecCCCCccccccCcccChHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHhh
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNL  198 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~l  198 (270)
                      +.++....  ..+++.++..+....              ++.....                      ....+.++++.+
T Consensus        73 v~Q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (552)
T TIGR03719        73 LPQEPQLD--PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL  150 (552)
T ss_pred             EeccCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence            55554321  124544444321100              0111000                      001223344444


Q ss_pred             ccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          199 RNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       199 ~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      ++. .+..+..||+||+||++++.++..++++||+|||+..||+...+.+.+++..    .|+++|+.+
T Consensus       151 ~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~  219 (552)
T TIGR03719       151 RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRY  219 (552)
T ss_pred             CCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            443 2455679999999999999999999999999999999999988888888763    377777763

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.86  E-value=4.1e-22  Score=190.78  Aligned_cols=182  Identities=15%  Similarity=0.023  Sum_probs=119.4

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCccc-CCCCCC-C---
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASS-FDSQVK-P---  148 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-~~G~~-~~~~~~-~---  148 (270)
                      .++++++|+++.|++..    +|+++||++++|+++||+||||||||||+|+|+|++.   + ++|++ +++... .   
T Consensus       258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~  330 (490)
T PRK10938        258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET  330 (490)
T ss_pred             CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence            35799999999997632    6799999999999999999999999999999999762   3 47773 333211 0   


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHh-cCCCC---CccHHHHHHHHHhhccCC---CcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW---TFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~---~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~r  216 (270)
                           ...+. +.++.........+..+........ .+...   ........++++.+++..   +..+..||+||+||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  409 (490)
T PRK10938        331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL  409 (490)
T ss_pred             HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence                 01122 3332110000001111100000000 01110   111234566777777653   44567999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY  264 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~  264 (270)
                      ++++.++..+++++|+|||+..+|+..++.+.+++..        .|+++|+.+..
T Consensus       410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~  465 (490)
T PRK10938        410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA  465 (490)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence            9999999999999999999999999888887776642        37888887543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=6.4e-22  Score=174.95  Aligned_cols=176  Identities=14%  Similarity=0.082  Sum_probs=119.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK--  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~--  147 (270)
                      +++.++++++.|+...    +++++||++++|+++||+|+||||||||+++|+|++.   |     ++|++ +++...  
T Consensus         7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~   79 (261)
T PRK14263          7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG   79 (261)
T ss_pred             ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence            5688999999997633    7799999999999999999999999999999999984   3     56763 333211  


Q ss_pred             ---C----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC------CcCCCCCCcccC
Q 024225          148 ---P----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVG  214 (270)
Q Consensus       148 ---~----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~  214 (270)
                         .    .....++.++... +.  ++..++........+. .........+.++.+.+..      +..+..+|+|++
T Consensus        80 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~  155 (261)
T PRK14263         80 KGVDPVVVRRYIGMVFQQPNP-FS--MSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ  155 (261)
T ss_pred             cccchHhhhhceEEEecCCcc-cc--ccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence               0    0112224444332 11  3444433322221111 1111234455666665432      234568999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ||+.++.++..+++++|+|||+..+|....+.+.+++.+      .|+++|+.+
T Consensus       156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~  209 (261)
T PRK14263        156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ  209 (261)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            999999999999999999999999999877777777663      266777765

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.86  E-value=5.5e-22  Score=195.36  Aligned_cols=174  Identities=15%  Similarity=0.140  Sum_probs=124.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      .+++++||++.|++..    +++++||+|.+|+++||+||||||||||+++|+|++.   |++|++..+..  ...|. +
T Consensus       318 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~--~~i~y-~  387 (635)
T PRK11147        318 IVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK--LEVAY-F  387 (635)
T ss_pred             ceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC--cEEEE-E
Confidence            4799999999997633    6799999999999999999999999999999999985   78887533321  12222 4


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      .++... ..+.+++.++.....  .+.........+.++++.+.+.   ....+..||+|+++|++++.++..++++||+
T Consensus       388 ~q~~~~-l~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL  464 (635)
T PRK11147        388 DQHRAE-LDPEKTVMDNLAEGK--QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL  464 (635)
T ss_pred             eCcccc-cCCCCCHHHHHHhhc--ccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            433211 112234433322111  0110011123456677777663   2456679999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      |||+..||....+.+.+++..    .|+|+||.+
T Consensus       465 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~  498 (635)
T PRK11147        465 DEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ  498 (635)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            999999999988888888874    488888864

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.86  E-value=3.7e-22  Score=212.89  Aligned_cols=180  Identities=14%  Similarity=0.079  Sum_probs=130.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------  147 (270)
                      .+++++||+|.|++.  ...+++|+||+|++||++||+||||||||||+|+|+|++.   |++|++ +++...       
T Consensus      1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257      1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred             ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence            469999999999752  1237899999999999999999999999999999999996   888884 333211       


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      ....|. +.+++...  ..+++.++.......+|++.........++++.+++.  .+..+..||+|++||+.++.++..
T Consensus      2011 r~~IGy-~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257      2011 HQNMGY-CPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred             hhhEEE-EeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            112333 55543322  2366666665544445654322223445667777664  356678999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +|+++++|||+.++|+..++.+.+++..       .|+++|+.++
T Consensus      2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257      2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999999999999999777766666542       2666666543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.86  E-value=3.1e-22  Score=198.89  Aligned_cols=169  Identities=14%  Similarity=0.101  Sum_probs=113.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|++..  ..+|+|+||+|++|+.+||+|+||||||||+|+|+|++.   |++|++ +++...        
T Consensus       451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence            489999999996432  226799999999999999999999999999999999994   566653 333110        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~  214 (270)
                      +...+ ++++|.+....   +.       +.+..+....+.+.+.+.++..+.         |.+..    ...+|+||+
T Consensus       526 r~~i~-~v~Q~~~lf~g---TI-------~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr  594 (686)
T TIGR03797       526 RRQLG-VVLQNGRLMSG---SI-------FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR  594 (686)
T ss_pred             HhccE-EEccCCccCcc---cH-------HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            11122 24554442211   11       112211111333444444443332         22221    246999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                      ||+++++++..+++++|+|||+..+|+...+++.+.++    ..|.|+|..
T Consensus       595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~  645 (686)
T TIGR03797       595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRL  645 (686)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecCh
Confidence            99999999999999999999999999977776666555    447777765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.86  E-value=4.1e-22  Score=198.69  Aligned_cols=169  Identities=19%  Similarity=0.119  Sum_probs=113.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|++..+  .+|+|+||+|++|+.+||+|+||||||||+|+|+|++.   |++|++ +++...        
T Consensus       477 ~I~~~~vsf~y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  551 (710)
T TIGR03796       477 YVELRNITFGYSPLEP--PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL  551 (710)
T ss_pred             eEEEEEEEEecCCCCC--CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence            5899999999986322  26799999999999999999999999999999999994   555552 222100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc---------CCCc----CCCCCCccc
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV  213 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~  213 (270)
                      +...+ ++.++.+...   -+.       +.+..+ ....+.+.+.+.++..+.         |.+.    ....+||||
T Consensus       552 r~~i~-~v~Q~~~lf~---gTi-------~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ  620 (710)
T TIGR03796       552 ANSVA-MVDQDIFLFE---GTV-------RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ  620 (710)
T ss_pred             Hhhee-EEecCChhhh---ccH-------HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence            01112 2444443221   111       122221 112333444444443322         2222    234699999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                      +||+++++++..+++++|+|||+..+|+...+++.+.+.    ..|.|+|..
T Consensus       621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl  672 (710)
T TIGR03796       621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL  672 (710)
T ss_pred             HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            999999999999999999999999999977777766665    447777765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.86  E-value=4.8e-22  Score=176.91  Aligned_cols=170  Identities=14%  Similarity=0.143  Sum_probs=112.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------P  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------p  149 (270)
                      ++++||++.|++..  ..+|+|+||+|++||++||+|+||||||||+++|+|++    +++|++ +++... .      .
T Consensus         3 i~~~nls~~~~~~~--~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289           3 MTVKDLTAKYTEGG--NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             EEEEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence            68899999995321  12679999999999999999999999999999999998    455663 333110 0      0


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCC-----------CCCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~-----------~~~S~g~~~r  216 (270)
                      ....+++++... +.  .+..+       .+........+.+.+.++.+++..  +..+           ..||+|++||
T Consensus        77 ~~i~~v~q~~~l-f~--~tv~~-------nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qr  146 (275)
T cd03289          77 KAFGVIPQKVFI-FS--GTFRK-------NLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQL  146 (275)
T ss_pred             hhEEEECCCccc-ch--hhHHH-------HhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence            112223333321 11  12211       111111122334455555555432  1122           2399999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      +.+++++..+++++|+|||+..+|....+.+.+.+..      .|+++|+.+.
T Consensus       147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~  199 (275)
T cd03289         147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA  199 (275)
T ss_pred             HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHH
Confidence            9999999999999999999999999877777776662      2777777643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.86  E-value=5.7e-22  Score=211.47  Aligned_cols=181  Identities=15%  Similarity=0.155  Sum_probs=133.0

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------  147 (270)
                      ..++++||+|.|++..  ..+++|+||++++||+++|+||||||||||+++|+|++.   |++|++ +++...       
T Consensus       927 ~~L~I~nLsK~y~~~~--k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~~ 1001 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDAV 1001 (2272)
T ss_pred             ceEEEEeEEEEecCCC--ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHHH
Confidence            4799999999996311  227799999999999999999999999999999999996   888884 333211       


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      +...|. +.++....  ..+++.++.....+..|.........+.++++.+++..  +..+..||+||+||+.+++++..
T Consensus      1002 r~~IG~-~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257      1002 RQSLGM-CPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred             hhcEEE-EecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence            112233 55554322  23677666665544455433222344567788777753  45677999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccch
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKETY  264 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~~  264 (270)
                      +++++|+|||+.++|+..++.+.+++..      .|.++|+.+++
T Consensus      1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea 1123 (2272)
T TIGR01257      1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA 1123 (2272)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            9999999999999999777777766652      36777776543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.86  E-value=6.4e-22  Score=196.82  Aligned_cols=167  Identities=14%  Similarity=0.105  Sum_probs=111.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++..+  .+|+|+||+|++|+.++|+|+||||||||+|+|+|++                .|+.|. |.
T Consensus       463 ~I~~~~vsf~Y~~~~~--~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~----------------~p~~G~-I~  523 (694)
T TIGR03375       463 EIEFRNVSFAYPGQET--PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY----------------QPTEGS-VL  523 (694)
T ss_pred             eEEEEEEEEEeCCCCc--cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCCce-EE
Confidence            5899999999975322  2679999999999999999999999999999999999                444454 45


Q ss_pred             cCCCCccccccCc--------ccCh----HHHHHhcCCC-CCccHHHHHHHHHhhc---------cCCCc----CCCCCC
Q 024225          157 MDGFHLYLSQLDA--------MEDP----KEAHARRGAP-WTFNPLLLLNCLKNLR---------NQGSV----YAPSFD  210 (270)
Q Consensus       157 ~dg~~~~~~~l~~--------~~~~----~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S  210 (270)
                      +||.++.......        .+++    .-.+.++.+. ...+.+.+.+.++..+         .|.+.    ....+|
T Consensus       524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS  603 (694)
T TIGR03375       524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS  603 (694)
T ss_pred             ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence            5554332200000        0000    0011222221 1123333333333322         22221    224799


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      +||+||+++++++..+++++|+||++..+|+...+.+.+.+.      ..|.|+|+.+
T Consensus       604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~  661 (694)
T TIGR03375       604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS  661 (694)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            999999999999999999999999999999977777766654      3477777764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1e-21  Score=188.21  Aligned_cols=178  Identities=12%  Similarity=0.105  Sum_probs=116.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CC-
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PD-  150 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~-  150 (270)
                      ++++++||++.|.  .    +++++||++++||++||+||||||||||+++|+|+++   |++|++ +++....   +. 
T Consensus       249 ~~i~~~~l~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~  319 (491)
T PRK10982        249 VILEVRNLTSLRQ--P----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE  319 (491)
T ss_pred             cEEEEeCcccccC--c----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence            4699999999852  1    6799999999999999999999999999999999985   667763 3331110   00 


Q ss_pred             ---c-eEEeecCCC--CccccccCcccCh--HHHHH---hcCC-CCCccHHHHHHHHHhhccC---CCcCCCCCCcccCC
Q 024225          151 ---V-ATVLPMDGF--HLYLSQLDAMEDP--KEAHA---RRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (270)
Q Consensus       151 ---~-g~~i~~dg~--~~~~~~l~~~~~~--~~~~~---~~g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~  215 (270)
                         . ..++.++..  .++ ..++..++.  +....   ..+. ..........++++.+.+.   .+..+..||+||+|
T Consensus       320 ~~~~~i~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  398 (491)
T PRK10982        320 AINHGFALVTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ  398 (491)
T ss_pred             HHHCCCEEcCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence               0 111222211  000 011111110  00100   0111 1001122345666766663   25567799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      |+.++.++..++++||+|||+..+|....+.+.++++       ..|+++||.+.
T Consensus       399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~  453 (491)
T PRK10982        399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE  453 (491)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            9999999999999999999999999988888877774       22788887654

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.86  E-value=9.9e-22  Score=173.27  Aligned_cols=174  Identities=12%  Similarity=0.040  Sum_probs=112.0

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----  148 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----  148 (270)
                      ....++++|+++.|+...  ..+++++||++++|+++||+|+||||||||+++|+|++.   |++|++ +++....    
T Consensus        16 ~~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   90 (257)
T cd03288          16 LGGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPL   90 (257)
T ss_pred             CCceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCH
Confidence            345799999999997521  236799999999999999999999999999999999984   677763 3331110    


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH---------HHhhc--cC--CCcCCCCCCcc
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLR--NQ--GSVYAPSFDHG  212 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~--~~--~~~~~~~~S~g  212 (270)
                         .....++.++.. ++.  .+..       .................         ++.+.  ..  .......+|+|
T Consensus        91 ~~~~~~i~~v~q~~~-l~~--~tv~-------~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G  160 (257)
T cd03288          91 HTLRSRLSIILQDPI-LFS--GSIR-------FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG  160 (257)
T ss_pred             HHHhhhEEEECCCCc-ccc--cHHH-------HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence               011122333322 111  1111       11111111111111121         22221  11  11234589999


Q ss_pred             cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ++||++++.++..+++++|+|||+..+|+...+.+.++++.      .|+++|+.+
T Consensus       161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~  216 (257)
T cd03288         161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVS  216 (257)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChH
Confidence            99999999999999999999999999999888877777763      256666654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.5e-21  Score=159.47  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=120.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCc--
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDV--  151 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~--  151 (270)
                      .++++||+-..+...    .+.+++|++.+||++-|.||||||||||+|+|+|++.   |++|++ +.+...  .+.+  
T Consensus         2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~   74 (209)
T COG4133           2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH   74 (209)
T ss_pred             cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence            356778877777643    6799999999999999999999999999999999995   666663 222100  0100  


Q ss_pred             eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                      -...++.-..--...++++||..+..+..+.   .+...+.+.++.+++..  ++....+|-||++|+++++.+...+++
T Consensus        75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL  151 (209)
T COG4133          75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL  151 (209)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence            0001111111112446777887777766654   23355667777777764  555668999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhcc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~  253 (270)
                      .|+|||+..+|......+..++..
T Consensus       152 WiLDEP~taLDk~g~a~l~~l~~~  175 (209)
T COG4133         152 WILDEPFTALDKEGVALLTALMAA  175 (209)
T ss_pred             eeecCcccccCHHHHHHHHHHHHH
Confidence            999999999999888887777773

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.85  E-value=1.4e-21  Score=168.06  Aligned_cols=169  Identities=12%  Similarity=0.090  Sum_probs=110.0

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---------
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---------  148 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---------  148 (270)
                      .+.++.+.|++.   ..+++++||++++|++++|+||||||||||+++|+|++.   |++|++ +++....         
T Consensus         2 ~~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (218)
T cd03290           2 QVTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS   75 (218)
T ss_pred             eeeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence            456888889753   237799999999999999999999999999999999985   788873 3332110         


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCccc
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~  213 (270)
                        .....++.++... +.  .+..++...     ...  .........++.+.+.             ...++..+|+|+
T Consensus        76 ~~~~~i~~~~q~~~~-~~--~t~~~nl~~-----~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~  145 (218)
T cd03290          76 RNRYSVAYAAQKPWL-LN--ATVEENITF-----GSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ  145 (218)
T ss_pred             hhcceEEEEcCCCcc-cc--ccHHHHHhh-----cCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence              0111223333321 11  222221111     111  1122222333333221             123566899999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH--hhc-------cceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS--MFD-------EKCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~--~~~-------~~i~v~~~~~~  263 (270)
                      +||++++.++..+++++|+|||+..+|...++.+.+  ++.       ..|+++|+.+.
T Consensus       146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~  204 (218)
T cd03290         146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY  204 (218)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence            999999999999999999999999999987776554  222       23777777643

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.85  E-value=5.9e-22  Score=165.31  Aligned_cols=121  Identities=15%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCC
Q 024225           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF  160 (270)
Q Consensus        81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~  160 (270)
                      .||+|.|++..    ++.+ +|++++||+++|+||||||||||+++|+|++                +|+.|. |.++|.
T Consensus         4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----------------~p~~G~-i~~~g~   61 (177)
T cd03222           4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL----------------IPNGDN-DEWDGI   61 (177)
T ss_pred             CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC----------------CCCCcE-EEECCE
Confidence            47889997633    5677 4899999999999999999999999999998                677788 777764


Q ss_pred             CccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCC
Q 024225          161 HLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (270)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~l  239 (270)
                      .+                  ++ ++..                     .+|+||+||++++.++..+++++++|||+..+
T Consensus        62 ~i------------------~~~~q~~---------------------~LSgGq~qrv~laral~~~p~lllLDEPts~L  102 (177)
T cd03222          62 TP------------------VYKPQYI---------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYL  102 (177)
T ss_pred             EE------------------EEEcccC---------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence            21                  11 1100                     09999999999999999999999999999999


Q ss_pred             ChhhHHHHHHhhc--------cceEEecccc
Q 024225          240 DGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       240 De~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      |+..++.+.+++.        ..|+++|+.+
T Consensus       103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~  133 (177)
T cd03222         103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA  133 (177)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            9987776666664        2367777664

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.85  E-value=7e-22  Score=169.66  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=102.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC--CCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--DSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~--~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~  173 (270)
                      +|+|+||++++|+++||+||||||||||+++|+|++.   |++|++.  ++... +     +..+..  ..+.++..++.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-~-----~~~~~~--l~~~ltv~enl   70 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-P-----LGANSF--ILPGLTGEENA   70 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-c-----cccccc--cCCcCcHHHHH
Confidence            5799999999999999999999999999999999984   6777642  22110 0     111111  11224555555


Q ss_pred             HHHHHhcCCCCCccHHHHH-HHHHhhcc--CCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHh
Q 024225          174 KEAHARRGAPWTFNPLLLL-NCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (270)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~-~~l~~l~~--~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~  250 (270)
                      ......++..    ..... .+.+...+  ..+..+..||+||+||++++.++..+++++|+|||+..+|....+.+.++
T Consensus        71 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~  146 (213)
T PRK15177         71 RMMASLYGLD----GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA  146 (213)
T ss_pred             HHHHHHcCCC----HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence            4433333421    11111 12222222  23456679999999999999999999999999999999999777766665


Q ss_pred             hc------cceEEeccccc
Q 024225          251 FD------EKCYATSFKET  263 (270)
Q Consensus       251 ~~------~~i~v~~~~~~  263 (270)
                      +.      -.|+++|+.+.
T Consensus       147 l~~~~~~~~ii~vsH~~~~  165 (213)
T PRK15177        147 LACQLQQKGLIVLTHNPRL  165 (213)
T ss_pred             HHHHhhCCcEEEEECCHHH
Confidence            42      23677777643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.85  E-value=1e-21  Score=189.62  Aligned_cols=172  Identities=17%  Similarity=0.132  Sum_probs=115.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      .++++||++.|++..+  .+++|+||++++|++++|+||||||||||+|+|+|++.   |++|++ +++...   .+   
T Consensus       320 ~i~~~~v~f~y~~~~~--~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRA--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             eEEEEEEEEECCCCCc--ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence            5899999999976322  26799999999999999999999999999999999994   666663 232110   00   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~  215 (270)
                       ....++.++.+...   -+..+|.     .++.+ ....+.+.+.++....         |.+.    ....+||||+|
T Consensus       395 r~~i~~v~Q~~~lf~---~ti~~Ni-----~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q  465 (529)
T TIGR02857       395 RDQIAWVPQHPFLFA---GTIAENI-----RLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ  465 (529)
T ss_pred             HhheEEEcCCCcccC---cCHHHHH-----hccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence             01222444443211   1221111     11111 1222333344333322         2222    23479999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      |+++++++..+++++|+|||+..+|+...+.+.+.+..      .|.|+|+.+
T Consensus       466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~  518 (529)
T TIGR02857       466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA  518 (529)
T ss_pred             HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            99999999999999999999999999888877766663      377777764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=4.6e-21  Score=155.73  Aligned_cols=172  Identities=18%  Similarity=0.180  Sum_probs=121.3

Q ss_pred             eEEeccchhhhhhhh---cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCC--------
Q 024225           77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ--------  145 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~---~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~--------  145 (270)
                      .+.++||+|.|--..   -.+.+++++||+++.||+|+|-||||+|||||+|+|.+.+.   ||+|.++-.+        
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~   80 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV   80 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence            488999999994322   23667899999999999999999999999999999999995   6766632110        


Q ss_pred             CCCC---------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC---cCCCCCCccc
Q 024225          146 VKPP---------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGV  213 (270)
Q Consensus       146 ~~~p---------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~---~~~~~~S~g~  213 (270)
                      ...|         +.|. +++.=..+++  ....+-..+.....|++..........++..+...+.   ..+..||||+
T Consensus        81 ~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE  157 (235)
T COG4778          81 TAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE  157 (235)
T ss_pred             ccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence            0011         1121 2222111121  2222222223334555443334445667777777654   4466999999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~  254 (270)
                      +||+.++..++.+..||++|||+..||...+.-+.++++++
T Consensus       158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999965

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=4e-22  Score=165.09  Aligned_cols=156  Identities=17%  Similarity=0.206  Sum_probs=110.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      +++++++|+..|++..    |+.++||++.+||.-+|+|||||||||++..|.|-.                +|+.|. +
T Consensus         4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt----------------rp~~G~-v   62 (249)
T COG4674           4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT----------------RPQEGE-V   62 (249)
T ss_pred             ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC----------------CCCcce-E
Confidence            5689999999999976    999999999999999999999999999999999987                556666 4


Q ss_pred             ecCC-CCccc---------------------cccCcccChHHHHHhc-CC-------CCCccHHHHHHHHHhhccCCC--
Q 024225          156 PMDG-FHLYL---------------------SQLDAMEDPKEAHARR-GA-------PWTFNPLLLLNCLKNLRNQGS--  203 (270)
Q Consensus       156 ~~dg-~~~~~---------------------~~l~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~l~~l~~~~~--  203 (270)
                      .++| .++..                     ..+++++|.+....+. ++       .......++.++++.++++..  
T Consensus        63 ~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~  142 (249)
T COG4674          63 LFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD  142 (249)
T ss_pred             EEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh
Confidence            4444 32221                     1123333333221110 00       001112234455555555543  


Q ss_pred             cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .....+||||+|++++...+..+|++|++|||+.++-+.-.++..++++
T Consensus       143 ~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~  191 (249)
T COG4674         143 RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK  191 (249)
T ss_pred             hhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHH
Confidence            3445889999999999999999999999999999998766666667666

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.85  E-value=1.3e-21  Score=171.77  Aligned_cols=169  Identities=16%  Similarity=0.122  Sum_probs=112.8

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----C
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----D  150 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----~  150 (270)
                      +++||++.    .    +|+++||++++|++++|+||||||||||+++|+|++    +.+|++ +++....   +    .
T Consensus         2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~   69 (248)
T PRK03695          2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR   69 (248)
T ss_pred             cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence            45677774    1    679999999999999999999999999999999987    457874 4432111   1    1


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc---
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL---  225 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~---  225 (270)
                      ...+++++.....  .++..++..... ..+...........++++.+++..  +..+..+|+|++||+.++.++..   
T Consensus        70 ~i~~v~q~~~~~~--~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~  146 (248)
T PRK03695         70 HRAYLSQQQTPPF--AMPVFQYLTLHQ-PDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP  146 (248)
T ss_pred             heEEecccCccCC--CccHHHHHHhcC-ccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence            1122444432211  133333222110 111111111234566777776653  45667999999999999999975   


Q ss_pred             ----CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          226 ----QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       226 ----~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                          +++++|+|||+..+|...++.+.+++.       ..|+++|+.+
T Consensus       147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~  194 (248)
T PRK03695        147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN  194 (248)
T ss_pred             ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence                679999999999999988877777775       2367777765

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.85  E-value=9.4e-22  Score=196.04  Aligned_cols=172  Identities=15%  Similarity=0.074  Sum_probs=111.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      .++++||++.|++..   .+|+|+||+|++|+.+||+||||||||||+++|+|++.   |++|++ +++...   .+   
T Consensus       473 ~I~~~~vsf~y~~~~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       473 DIVINDVSYSYGYGS---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             cEEEEEEEEEcCCCC---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence            589999999997421   26799999999999999999999999999999999994   555552 222100   00   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCc----CCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~~~  215 (270)
                       ....++.++.+...   -+..+|.     .++.....+.+.+.+.++..+         .|.+.    ....+|+||+|
T Consensus       547 r~~i~~v~Q~~~lf~---gTI~eNi-----~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ  618 (708)
T TIGR01193       547 RQFINYLPQEPYIFS---GSILENL-----LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ  618 (708)
T ss_pred             HHheEEEecCceehh---HHHHHHH-----hccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence             11122444443211   1111111     111111223333333333222         22222    23479999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~~~~~  262 (270)
                      |+++++++..+++++|+||++..+|+...+.+.+.+.     ..|.|+|..+
T Consensus       619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~  670 (708)
T TIGR01193       619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLS  670 (708)
T ss_pred             HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchH
Confidence            9999999999999999999999999977776666554     3367777653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.7e-21  Score=177.49  Aligned_cols=183  Identities=13%  Similarity=0.054  Sum_probs=119.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP----  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~----  148 (270)
                      .+++++|+++.|.+..  ..+|+|+||+|++|+++||+||||||||||+++|+|++..  ..|++|.+ +++....    
T Consensus        79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            4799999999996421  2367999999999999999999999999999999999731  01346663 3332110    


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCc-cHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r  216 (270)
                           .....+++++.... .  .+..++..+.....+..... .......+++.+.+.      .......+|+||+||
T Consensus       157 ~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR  233 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR  233 (329)
T ss_pred             chHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence                 01122244443321 1  33334333211111111000 011134455555432      234566899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      +.+++++..++++||+|||+..+|....+.+.+.+.      ..|+++|+.+.
T Consensus       234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~  286 (329)
T PRK14257        234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ  286 (329)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999999999999999977777776666      23677777654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.7e-21  Score=179.63  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=116.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++..  ..+|+|+||++++||.|+|+|+||||||||+++|+|.+                .|+.|. |.
T Consensus       336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~----------------~~~~G~-i~  396 (573)
T COG4987         336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW----------------DPQQGS-IT  396 (573)
T ss_pred             eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc----------------CCCCCe-ee
Confidence            689999999999844  45679999999999999999999999999999999998                455555 55


Q ss_pred             cCCCCccccccCcc----------cCh----HHHHHh--cCCCCCccHHHHHHHHHhhccCC---------Cc----CCC
Q 024225          157 MDGFHLYLSQLDAM----------EDP----KEAHAR--RGAPWTFNPLLLLNCLKNLRNQG---------SV----YAP  207 (270)
Q Consensus       157 ~dg~~~~~~~l~~~----------~~~----~~~~~~--~g~~~~~~~~~~~~~l~~l~~~~---------~~----~~~  207 (270)
                      +.|.++..  ++..          +..    .-.+.+  .+-+. -..+.+.+.++.+++.+         +.    ...
T Consensus       397 ~~g~~~~~--l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~  473 (573)
T COG4987         397 LNGVEIAS--LDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR  473 (573)
T ss_pred             ECCcChhh--CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC
Confidence            55543322  1100          000    001111  22222 22344445555554321         11    234


Q ss_pred             CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225          208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK  261 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~  261 (270)
                      .||||++||+++++++..+++++|+|||+-+||+..-+++.+.+.+      .++|||+.
T Consensus       474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL  533 (573)
T COG4987         474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRL  533 (573)
T ss_pred             cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence            8999999999999999999999999999999999888887777763      38888876

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.85  E-value=1.2e-21  Score=195.35  Aligned_cols=172  Identities=15%  Similarity=0.112  Sum_probs=114.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|++.. ...+|+|+||++++||+++|+||||||||||+++|.|++.   |++|++ +++...        
T Consensus       478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  553 (711)
T TIGR00958       478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL  553 (711)
T ss_pred             eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence            589999999997532 1236799999999999999999999999999999999994   666653 332100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCcC----CCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~~  214 (270)
                      +. ...++.++.+...   -+..+|.     .+|.+ ..+.+.+.+.++...         .|.+..    ...+|+||+
T Consensus       554 r~-~i~~v~Q~~~lF~---gTIreNI-----~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk  623 (711)
T TIGR00958       554 HR-QVALVGQEPVLFS---GSVRENI-----AYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK  623 (711)
T ss_pred             Hh-hceEEecCccccc---cCHHHHH-----hcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence            01 1222455443221   1221111     11222 122334444444332         222222    247999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~~  262 (270)
                      ||+++++++..+++++|+||++..+|+...+.+.+...    ..|.|+|..+
T Consensus       624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~  675 (711)
T TIGR00958       624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLS  675 (711)
T ss_pred             HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHH
Confidence            99999999999999999999999999988777776322    3477777753

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.85  E-value=1.5e-21  Score=190.34  Aligned_cols=171  Identities=14%  Similarity=0.092  Sum_probs=114.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      ..++++||++.|++..+  .+|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++....   +  
T Consensus       337 ~~i~~~~v~f~y~~~~~--~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~  411 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA  411 (574)
T ss_pred             CeEEEEEEEEECCCCCC--cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence            35899999999975322  26799999999999999999999999999999999994   555552 2221000   0  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC--------Cc----CCCCCCcccC
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG  214 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~--------~~----~~~~~S~g~~  214 (270)
                        ....+++++.+...   -+.       +.+..+. ...+.+.+.+.++..+...        +.    ....+|+||+
T Consensus       412 ~r~~i~~v~Q~~~lf~---~ti-------~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr  481 (574)
T PRK11160        412 LRQAISVVSQRVHLFS---ATL-------RDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ  481 (574)
T ss_pred             HHhheeEEcccchhhc---ccH-------HHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence              01122444432211   111       1222221 1223344455555444322        11    2346999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      ||+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|.++|..
T Consensus       482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~  534 (574)
T PRK11160        482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL  534 (574)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCh
Confidence            99999999999999999999999999988887777765      236666665

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.84  E-value=3.6e-21  Score=189.92  Aligned_cols=182  Identities=15%  Similarity=0.117  Sum_probs=127.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++|+++.|+.......+++++||++++||+++|+||||||||||+++|+|++.   |++|++ +++....      
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence            468999999999642212336799999999999999999999999999999999985   788873 4442111      


Q ss_pred             -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                           .....++.++...+.  +++..++........+...........++++.+++..  +..+..+|+||+||+.++.
T Consensus        80 ~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAr  157 (648)
T PRK10535         80 LAQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIAR  157 (648)
T ss_pred             HHHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHH
Confidence                 112233555443211  1343444433222223222222334566777776653  4456689999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ++..+|+++|+|||+..+|...++.+.+++.+       .|.++|+.+
T Consensus       158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~  205 (648)
T PRK10535        158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ  205 (648)
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence            99999999999999999999888888777752       266677664

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.2e-21  Score=186.24  Aligned_cols=176  Identities=14%  Similarity=0.120  Sum_probs=117.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      +.+++++++..    .    +++|+||+|++|+++||+||||||||||+|+|+|+++   |++|++ +++....   +  
T Consensus       256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~  324 (501)
T PRK11288        256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD  324 (501)
T ss_pred             cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence            36888999732    1    6799999999999999999999999999999999985   777774 3332111   0  


Q ss_pred             ---CceEEeecCCC-CccccccCcccChHHHHHhc----CC--CCCccHHHHHHHHHhhccC---CCcCCCCCCcccCCh
Q 024225          150 ---DVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (270)
Q Consensus       150 ---~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~r  216 (270)
                         ....+++++.. ......++..++........    ++  ..........++++.+++.   .+..+..||+||+||
T Consensus       325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  404 (501)
T PRK11288        325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK  404 (501)
T ss_pred             HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence               01122333321 00111133333222110000    10  0001123456777777763   245677999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +.++.++..++++||+|||+..+|...++.+.++++       ..|+++||.+
T Consensus       405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~  457 (501)
T PRK11288        405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP  457 (501)
T ss_pred             HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            999999999999999999999999998888887764       3377777764

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.2e-21  Score=162.58  Aligned_cols=149  Identities=15%  Similarity=0.195  Sum_probs=99.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      +|+++||+....+..    .+++++|++.+||+++|+||||||||||+|.|+|.+                .|+.|. +.
T Consensus         1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel----------------~p~~G~-v~   59 (259)
T COG4559           1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL----------------SPDSGE-VT   59 (259)
T ss_pred             CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc----------------CCCCCe-Ee
Confidence            478899999988754    669999999999999999999999999999999999                455555 55


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-CCCc---------------------------cHHHHHHHHHhhccC--CCcCC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---------------------------NPLLLLNCLKNLRNQ--GSVYA  206 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~---------------------------~~~~~~~~l~~l~~~--~~~~~  206 (270)
                      ++|..+..  ++.    +...+.+++ +++-                           +..-....+......  ....+
T Consensus        60 ~~g~~l~~--~~~----~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y  133 (259)
T COG4559          60 LNGVPLNS--WPP----EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY  133 (259)
T ss_pred             eCCcChhh--CCH----HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch
Confidence            55544322  111    111111111 1111                           111122333333221  34456


Q ss_pred             CCCCcccCChhhhhhhhcc------CCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          207 PSFDHGVGDPVEDDILVGL------QHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       207 ~~~S~g~~~rv~~~~~l~~------~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ..+|||++||+.+++.+..      ..++|++|||+..||-..+..+..+.+
T Consensus       134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR  185 (259)
T COG4559         134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR  185 (259)
T ss_pred             hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence            7999999999999976654      345999999999999866655555444

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.84  E-value=7.5e-21  Score=185.56  Aligned_cols=170  Identities=12%  Similarity=0.083  Sum_probs=115.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      .++++||++.|++..  ..+|+|+||++++|+.+||+|+||||||||+++|+|++.   |++|++ +++....       
T Consensus       341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence            489999999997532  226799999999999999999999999999999999994   666663 3331100       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCC--CCCccHHHHHHHHHhhc---------cCCCcC----CCCCCccc
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGV  213 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~--~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~  213 (270)
                      .....++++|.+...   -+       .+.+..+  +...+.+.+.+.++..+         .|.+..    ...+||||
T Consensus       416 ~~~i~~v~Q~~~lf~---~T-------i~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq  485 (582)
T PRK11176        416 RNQVALVSQNVHLFN---DT-------IANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ  485 (582)
T ss_pred             HhhceEEccCceeec---ch-------HHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence            011222444443221   11       2222222  22344444544444332         332322    24699999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      +||+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|.|+|+.
T Consensus       486 rQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~  539 (582)
T PRK11176        486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL  539 (582)
T ss_pred             HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence            999999999999999999999999999977666665554      347777766

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.84  E-value=1.9e-21  Score=190.18  Aligned_cols=169  Identities=14%  Similarity=0.101  Sum_probs=112.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----  148 (270)
                      .++++|+++.|++. .  .+|+|+||++++|+++||+|+||||||||+++|+|++.   |++|++ +++...   .    
T Consensus       340 ~i~~~~v~f~y~~~-~--~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        340 RIDIDNVSFAYRDD-N--LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             eEEEEEEEEEeCCC-C--ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence            48999999999742 1  26799999999999999999999999999999999994   555552 222100   0    


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD  215 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~  215 (270)
                      .....++++|.+-...   +.       +.+..+....+.+.+.+.++..+.         |.+.    ....+|+||+|
T Consensus       414 ~~~i~~v~Q~~~lF~~---Ti-------~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ  483 (592)
T PRK10790        414 RQGVAMVQQDPVVLAD---TF-------LANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ  483 (592)
T ss_pred             HhheEEEccCCccccc---hH-------HHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence            0112224444432111   11       122222112334444444444332         2222    23469999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      |+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|.|+|+.
T Consensus       484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~  535 (592)
T PRK10790        484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRL  535 (592)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence            9999999999999999999999999977777766664      336666655

>PRK13409 putative ATPase RIL; Provisional

Probab=99.84  E-value=4.6e-21  Score=186.83  Aligned_cols=168  Identities=13%  Similarity=0.089  Sum_probs=120.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++|+++.|++.     .|+++||++++||++||+||||||||||+|+|+|+++   |++|++.-.    ...+ ++
T Consensus       339 ~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~----~~i~-y~  405 (590)
T PRK13409        339 TLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE----LKIS-YK  405 (590)
T ss_pred             eEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe----eeEE-Ee
Confidence            579999999999751     3699999999999999999999999999999999985   677764221    0112 23


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      .++...  ...+++.++........+     ......++++.+++..  +..+..+|+||+||++++.++..+++++|+|
T Consensus       406 ~Q~~~~--~~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD  478 (590)
T PRK13409        406 PQYIKP--DYDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD  478 (590)
T ss_pred             cccccC--CCCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            333211  122344433322111111     1123456777776643  5567799999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225          234 GNYLFLDGGVWKDVSSMFDE--------KCYATSFKET  263 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~  263 (270)
                      ||+..||...+..+.+++..        .|+++||.+.
T Consensus       479 EPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~  516 (590)
T PRK13409        479 EPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM  516 (590)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999888777777652        3788887653

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.84  E-value=5.6e-21  Score=185.31  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++..   .+|+|+||++++|++++|+||||||||||+++|+|++                +|+.|. |.
T Consensus       322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~----------------~~~~G~-i~  381 (547)
T PRK10522        322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY----------------QPQSGE-IL  381 (547)
T ss_pred             eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EE
Confidence            589999999997421   2679999999999999999999999999999999998                455555 55


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-C--------------CCccHHHHHHHHHhhccCCCcC-------CCCCCcccC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-P--------------WTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVG  214 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~--------------~~~~~~~~~~~l~~l~~~~~~~-------~~~~S~g~~  214 (270)
                      +||.++....      ....+...++ +              ...+.+...+.++.+..+....       ...+|+||+
T Consensus       382 ~~g~~~~~~~------~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~  455 (547)
T PRK10522        382 LDGKPVTAEQ------PEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQK  455 (547)
T ss_pred             ECCEECCCCC------HHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHH
Confidence            5554432110      0001111111 0              1122334455566665543321       247999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK  261 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~  261 (270)
                      ||+++++++..+++++|+|||+..+|+...+.+.+.+.        ..|.|+|+.
T Consensus       456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~  510 (547)
T PRK10522        456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD  510 (547)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence            99999999999999999999999999977766544332        347788875

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.84  E-value=5.8e-21  Score=183.37  Aligned_cols=175  Identities=12%  Similarity=0.081  Sum_probs=119.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++|+++     .    +++++||++++||++||+||||||||||+++|+|+++   |++|++ +++....      
T Consensus       256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~  323 (501)
T PRK10762        256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD  323 (501)
T ss_pred             cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence            4789999984     1    5799999999999999999999999999999999985   788884 3332110      


Q ss_pred             ---CCceEEeecCCC-CccccccCcccChHHHHH-hc----C-CCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCC
Q 024225          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (270)
Q Consensus       149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~  215 (270)
                         ...+ ++.++.. ......+++.++...... ..    + ...........++++.+++.   .+..+..+|+||+|
T Consensus       324 ~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq  402 (501)
T PRK10762        324 GLANGIV-YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ  402 (501)
T ss_pred             HHHCCCE-EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence               1123 2454431 001112333333322110 00    1 00011123456777877763   34567799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      |+.++.++..+++++|+|||+..+|+...+.+.+++..       .|+++|+.+.
T Consensus       403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~  457 (501)
T PRK10762        403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE  457 (501)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            99999999999999999999999999888777777763       3788887653

>PLN03073 ABC transporter F family; Provisional

Probab=99.84  E-value=6.3e-21  Score=189.29  Aligned_cols=172  Identities=17%  Similarity=0.153  Sum_probs=122.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++||++.|++..   .+|+++||+|++|+++||+||||||||||+|+|+|++.   |++|++..+.  ....+ ++
T Consensus       507 ~~L~~~~ls~~y~~~~---~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~--~~~ig-yv  577 (718)
T PLN03073        507 PIISFSDASFGYPGGP---LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA--KVRMA-VF  577 (718)
T ss_pred             ceEEEEeeEEEeCCCC---eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC--ceeEE-EE
Confidence            5799999999996421   26799999999999999999999999999999999985   7777753221  11122 24


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      .++..  .  .++...+....... ..+ ........++++.+++..   ...+..+|+||+||++++.++..++++||+
T Consensus       578 ~Q~~~--~--~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL  651 (718)
T PLN03073        578 SQHHV--D--GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL  651 (718)
T ss_pred             ecccc--c--cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            44321  1  12222221111111 011 122345677888887752   456779999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      |||+..||....+.+.+.+..    .|+++||.+
T Consensus       652 DEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~  685 (718)
T PLN03073        652 DEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEH  685 (718)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            999999999888887777653    477777764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.84  E-value=2.9e-21  Score=187.98  Aligned_cols=157  Identities=16%  Similarity=0.158  Sum_probs=108.3

Q ss_pred             eEEeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        77 ~l~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      .++++||++.|++ ..    +++|+||++++||.+||+|||||||||++++|+|++                .|+.|. |
T Consensus       328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~----------------~~~~G~-I  386 (567)
T COG1132         328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY----------------DPTSGE-I  386 (567)
T ss_pred             eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC----------------CCCCCe-E
Confidence            4899999999985 23    679999999999999999999999999999999999                444455 4


Q ss_pred             ecCCCCccccccCcccChHHHHHhcC------------------C--CCCccHHHHHHH---------HHhhccCCCcC-
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRG------------------A--PWTFNPLLLLNC---------LKNLRNQGSVY-  205 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g------------------~--~~~~~~~~~~~~---------l~~l~~~~~~~-  205 (270)
                      .+||.++....      .+..++..+                  +  +. ...+.+.+.         ++++-.|-+.. 
T Consensus       387 ~idg~dI~~i~------~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~v  459 (567)
T COG1132         387 LIDGIDIRDIS------LDSLRKRIGIVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIV  459 (567)
T ss_pred             EECCEehhhcC------HHHHHHhccEEcccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCccccccee
Confidence            44554443211      111222222                  2  11 112222222         22331122222 


Q ss_pred             ---CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          206 ---APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       206 ---~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                         ...+|+||+||+++++++..+++++|+||++..+|...-+.+.+.++      ..+-|.|..
T Consensus       460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl  524 (567)
T COG1132         460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL  524 (567)
T ss_pred             cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence               23789999999999999999999999999999999987777777775      334455554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.84  E-value=7.9e-21  Score=182.83  Aligned_cols=175  Identities=19%  Similarity=0.168  Sum_probs=116.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----  149 (270)
                      ++++++|+++     .    +|+++||++++|+++||+||||||||||+|+|+|++.   |++|++ +++.....     
T Consensus       267 ~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~  334 (510)
T PRK15439        267 PVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ  334 (510)
T ss_pred             ceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4689999984     1    4799999999999999999999999999999999985   778874 33321110     


Q ss_pred             ---CceEEeecCCC--CccccccCcccChHHH-HHhcCCC--CCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhh
Q 024225          150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEA-HARRGAP--WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (270)
Q Consensus       150 ---~~g~~i~~dg~--~~~~~~l~~~~~~~~~-~~~~g~~--~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~  218 (270)
                         ....++.++..  .++ ..++..++.... .......  .......+.++++.+++.   .+..+..+|+||+||+.
T Consensus       335 ~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~  413 (510)
T PRK15439        335 RLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL  413 (510)
T ss_pred             HHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence               01112333210  111 112222221110 0001110  111122345677777764   24567799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      ++.++..++++||+|||+..+|...++.+.+++..       .|+++||.+.
T Consensus       414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~  465 (510)
T PRK15439        414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE  465 (510)
T ss_pred             HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence            99999999999999999999999888887777663       3788887643

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.84  E-value=3.7e-21  Score=187.20  Aligned_cols=170  Identities=14%  Similarity=0.064  Sum_probs=114.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      .++++||++.|++..+  .+|+|+||++++|++++|+|+||||||||+++|+|++.   |++|++ +++....       
T Consensus       330 ~i~~~~v~f~y~~~~~--~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDR--PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             eEEEEEEEEEcCCCCC--ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence            4899999999975322  26799999999999999999999999999999999994   556653 2221000       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCC--CCccHHHHHHHHHhhcc---------CCCcC----CCCCCccc
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGV  213 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~  213 (270)
                      .....+++++.+...   -+       .+.+..+.  ...+.+.+.+.++..+.         |.+..    ...+|+||
T Consensus       405 ~~~i~~v~Q~~~lf~---~T-------i~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq  474 (571)
T TIGR02203       405 RRQVALVSQDVVLFN---DT-------IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ  474 (571)
T ss_pred             HhhceEEccCccccc---cc-------HHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence            011222444443211   11       22222221  23444555444444332         22222    23689999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      +||+++++++..+++++++|||+..+|+...+.+.+.+.      ..|.|+|+.
T Consensus       475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~  528 (571)
T TIGR02203       475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL  528 (571)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence            999999999999999999999999999987777766554      336777776

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.84  E-value=4.1e-21  Score=191.04  Aligned_cols=170  Identities=14%  Similarity=0.076  Sum_probs=111.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|++..+  .+|+|+||++++|+.++|+|+||||||||+|+|+|++.   |++|++ +++...        
T Consensus       455 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~  529 (694)
T TIGR01846       455 AITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL  529 (694)
T ss_pred             eEEEEEEEEEcCCCCc--cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence            5899999999975322  26799999999999999999999999999999999993   555542 222100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHh---------hccCCCc----CCCCCCccc
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKN---------LRNQGSV----YAPSFDHGV  213 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~---------l~~~~~~----~~~~~S~g~  213 (270)
                      +...+ ++.++.+...   -+.       +.+..+. ...+.+.+.+.++.         +-.|.+.    ....+|+||
T Consensus       530 r~~i~-~v~q~~~lf~---~ti-------~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq  598 (694)
T TIGR01846       530 RRQMG-VVLQENVLFS---RSI-------RDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ  598 (694)
T ss_pred             HHhCe-EEccCCeehh---hhH-------HHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence            00111 2333332211   011       1122111 11223333333332         2222221    234799999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      +||+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|.++|+.+
T Consensus       599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~  653 (694)
T TIGR01846       599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS  653 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChH
Confidence            999999999999999999999999999987777766665      3377777664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.84  E-value=9.1e-21  Score=166.22  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=99.6

Q ss_pred             ccccceec-----CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcc
Q 024225           97 TSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAM  170 (270)
Q Consensus        97 l~~isl~i-----~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~  170 (270)
                      +.++++++     ++|++++|+||||||||||+++|+|++.   |++|++ +++.    ..+ ++.++...  ....++.
T Consensus        10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~-~~~q~~~~--~~~~tv~   79 (246)
T cd03237          10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVS-YKPQYIKA--DYEGTVR   79 (246)
T ss_pred             cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEE-EecccccC--CCCCCHH
Confidence            35555555     5799999999999999999999999984   667764 2221    111 12222111  1113333


Q ss_pred             cChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHH
Q 024225          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (270)
Q Consensus       171 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~  248 (270)
                      ++........+    .......++++.+++..  +..+..+|+||+||++++.++..+++++|+|||+..||...+..+.
T Consensus        80 e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~  155 (246)
T cd03237          80 DLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS  155 (246)
T ss_pred             HHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            32221111111    01122345666665543  4556799999999999999999999999999999999998777776


Q ss_pred             Hhhcc--------ceEEecccc
Q 024225          249 SMFDE--------KCYATSFKE  262 (270)
Q Consensus       249 ~~~~~--------~i~v~~~~~  262 (270)
                      +++..        .|+++|+.+
T Consensus       156 ~~l~~~~~~~~~tiiivsHd~~  177 (246)
T cd03237         156 KVIRRFAENNEKTAFVVEHDII  177 (246)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH
Confidence            66552        377787764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.84  E-value=7.1e-21  Score=187.66  Aligned_cols=174  Identities=13%  Similarity=0.095  Sum_probs=121.3

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--Cccc-CCCCCCC---CCce
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASS-FDSQVKP---PDVA  152 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~--~G~~-~~~~~~~---p~~g  152 (270)
                      ..+|+++.|++..    +|+|+|+++++||++||+||||||||||+++|+|++.   ++  +|++ +++....   ....
T Consensus        70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i  142 (659)
T PLN03211         70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT  142 (659)
T ss_pred             ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence            3567889997633    6799999999999999999999999999999999984   53  6774 4442111   1112


Q ss_pred             EEeecCCCCccccccCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhccCC-------CcCCCCCCcccCChhhhhh
Q 024225          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~l~~~~-------~~~~~~~S~g~~~rv~~~~  221 (270)
                      .++.+++....  .+++.++...... ...+...    ......++++.+++..       +.....+|+||+||+.++.
T Consensus       143 ~yv~Q~~~l~~--~lTV~E~l~~~a~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~  219 (659)
T PLN03211        143 GFVTQDDILYP--HLTVRETLVFCSL-LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH  219 (659)
T ss_pred             EEECcccccCC--cCCHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence            33666554332  2566665554322 2222111    1233566777776643       2245689999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ++..+++++++|||+.+||......+.++++.       .|.++|+.+
T Consensus       220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~  267 (659)
T PLN03211        220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS  267 (659)
T ss_pred             HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence            99999999999999999999887777777752       255555554

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.84  E-value=4.2e-21  Score=187.52  Aligned_cols=171  Identities=16%  Similarity=0.095  Sum_probs=114.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----  148 (270)
                      .++++||++.|++..   .+++|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .    
T Consensus       334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  407 (585)
T TIGR01192       334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL  407 (585)
T ss_pred             eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence            589999999997521   25799999999999999999999999999999999995   677763 333110   0    


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccCCC----cCCCCCCcccCC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVGD  215 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~----~~~~~~S~g~~~  215 (270)
                      .....++.++.+...   .+..+|.     .++.+. ...+.+.+.++         .+-.+.+    .....+|+||+|
T Consensus       408 ~~~i~~v~q~~~lf~---~ti~~Ni-----~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q  478 (585)
T TIGR01192       408 RKSIATVFQDAGLFN---RSIRENI-----RLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ  478 (585)
T ss_pred             HhheEEEccCCccCc---ccHHHHH-----hcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence            011223555543221   1222111     112121 12222322222         2211211    234479999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      |+++++++..+++++|+|||+..+|....+.+.+.+.      ..|.++|+.+
T Consensus       479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~  531 (585)
T TIGR01192       479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS  531 (585)
T ss_pred             HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChH
Confidence            9999999999999999999999999988887777665      3377777763

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.84  E-value=7.2e-21  Score=192.20  Aligned_cols=161  Identities=18%  Similarity=0.158  Sum_probs=126.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      -++++||++.|+..+ .+.+++|+||++++|+.+||+|||||||||.+.+|-+.+                .|+.|. |.
T Consensus       987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY----------------dp~~G~-V~ 1048 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY----------------DPDAGK-VK 1048 (1228)
T ss_pred             EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc----------------CCCCCe-EE
Confidence            389999999999643 477889999999999999999999999999999999999                788888 99


Q ss_pred             cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----------------------------CCcC---
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------GSVY---  205 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----------------------------~~~~---  205 (270)
                      +||+++.+.      +...+++..++-.|...-.-.++.||+..|                            -+..   
T Consensus      1049 IDg~dik~l------nl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1049 IDGVDIKDL------NLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred             ECCcccccC------CHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence            999887652      233455566654333222224555555544                            1221   


Q ss_pred             -CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          206 -APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       206 -~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                       .-++||||+||+++++++..+|+||++||.+..||-+.-+-+.+.+|      ..|.|.|-.
T Consensus      1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred             ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence             23889999999999999999999999999999999988888888888      336666544

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.83  E-value=4.8e-21  Score=187.26  Aligned_cols=170  Identities=18%  Similarity=0.142  Sum_probs=113.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      .++++||++.|++.. .  +|+|+||++++|++++|+|+||||||||+|+|+|++.   |++|.+ +++....       
T Consensus       334 ~I~~~~vsf~y~~~~-~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        334 AVEFDDVSFSYDNSR-Q--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             eEEEEEEEEEeCCCC-c--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence            589999999997421 2  6799999999999999999999999999999999995   666663 3331100       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCc----CCCCCCcccCC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD  215 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~~~  215 (270)
                      .....+++++.+...   -+..+|.     .++-+ ..+.+.+...++..+         .|.+.    ....+|+||+|
T Consensus       408 r~~i~~v~Q~~~lf~---~Ti~~Ni-----~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q  478 (588)
T PRK13657        408 RRNIAVVFQDAGLFN---RSIEDNI-----RVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ  478 (588)
T ss_pred             HhheEEEecCccccc---ccHHHHH-----hcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence            012233555543221   1221111     11111 122333333333322         22222    23469999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      |+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|.|+|+.
T Consensus       479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~  530 (588)
T PRK13657        479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRL  530 (588)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence            9999999999999999999999999977776665443      347777775

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.83  E-value=4.5e-21  Score=168.97  Aligned_cols=171  Identities=13%  Similarity=0.043  Sum_probs=106.4

Q ss_pred             ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCC
Q 024225           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF  160 (270)
Q Consensus        81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~  160 (270)
                      .+|++.|+...   .+++|+++ +.+|++++|+||||||||||+++|+|+++   |++|++...+   +.....-.++|.
T Consensus         4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~---~~~~~~~~~~g~   73 (255)
T cd03236           4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPP---DWDEILDEFRGS   73 (255)
T ss_pred             cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeecc---ccchhhhhccCc
Confidence            47899996421   36799995 99999999999999999999999999984   5555431000   000000013333


Q ss_pred             Cccccc----------------cCcccC--hHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225          161 HLYLSQ----------------LDAMED--PKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       161 ~~~~~~----------------l~~~~~--~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~  220 (270)
                      .+....                ......  .......  +..........++++.+++..  +..+..+|+|++||+.++
T Consensus        74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  151 (255)
T cd03236          74 ELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA  151 (255)
T ss_pred             hhhhhhHHhhhcccceeeecchhccCchHHHHHHHHH--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            221100                000000  0000000  000111233455666666543  345568999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      .++..+++++|+|||+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~  201 (255)
T cd03236         152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV  201 (255)
T ss_pred             HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            99999999999999999999976666665554       23777777643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.83  E-value=5.2e-21  Score=186.95  Aligned_cols=169  Identities=15%  Similarity=0.104  Sum_probs=115.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      .++++||++.|.+. +  .+|+|+||++++|+.+||+||||||||||+++|+|++    |++|++ +++....   +   
T Consensus       349 ~i~~~~vsf~~~~~-~--~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l  421 (588)
T PRK11174        349 TIEAEDLEILSPDG-K--TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW  421 (588)
T ss_pred             eEEEEeeEEeccCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence            48999999755431 1  2679999999999999999999999999999999997    677773 3432110   0   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh---------hccCCCcC----CCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~~S~g~~~  215 (270)
                       ....+++++.+-..   -+..+|.     .+|- .+.+.+.+.+.++.         +-.|.+..    ...+||||+|
T Consensus       422 r~~i~~v~Q~~~LF~---~TI~eNI-----~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQ  492 (588)
T PRK11174        422 RKHLSWVGQNPQLPH---GTLRDNV-----LLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ  492 (588)
T ss_pred             HhheEEecCCCcCCC---cCHHHHh-----hcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHH
Confidence             12334666665322   1222221     1221 22334444444333         32233322    3469999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      |+++++++..+++++|+||++..+|....+.+.+.+.      ..|.|+|..
T Consensus       493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl  544 (588)
T PRK11174        493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL  544 (588)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence            9999999999999999999999999987777776654      337777776

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.83  E-value=4.9e-21  Score=156.52  Aligned_cols=123  Identities=20%  Similarity=0.283  Sum_probs=96.6

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCC
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG  159 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg  159 (270)
                      ++++++.|++..    ++++++|++++|++++|+|+||||||||+++|+|++                .|..|. +.+++
T Consensus         2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~----------------~~~~G~-i~~~~   60 (157)
T cd00267           2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL----------------KPTSGE-ILIDG   60 (157)
T ss_pred             eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCccE-EEECC
Confidence            467888887532    779999999999999999999999999999999998                677888 78887


Q ss_pred             CCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCC
Q 024225          160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (270)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~l  239 (270)
                      ..+..     . .........++.                       +++|+|+++|+.++.++..+++++|+|||+..+
T Consensus        61 ~~~~~-----~-~~~~~~~~i~~~-----------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l  111 (157)
T cd00267          61 KDIAK-----L-PLEELRRRIGYV-----------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGL  111 (157)
T ss_pred             EEccc-----C-CHHHHHhceEEE-----------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            64321     0 011112222221                       119999999999999999999999999999999


Q ss_pred             ChhhHHHHHHhhc
Q 024225          240 DGGVWKDVSSMFD  252 (270)
Q Consensus       240 De~~~~~l~~~~~  252 (270)
                      |...+..+.+.+.
T Consensus       112 D~~~~~~l~~~l~  124 (157)
T cd00267         112 DPASRERLLELLR  124 (157)
T ss_pred             CHHHHHHHHHHHH
Confidence            9977777766654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.83  E-value=1.6e-20  Score=170.15  Aligned_cols=187  Identities=14%  Similarity=0.145  Sum_probs=136.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--Ccc-cCCCC------
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQ------  145 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~--~G~-~~~~~------  145 (270)
                      +++++++||+..|......+.++++|||+|++||.+||+|+||||||-.+..|++++...-.-  +|+ .|++.      
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s   83 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS   83 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence            468999999999986656677999999999999999999999999999999999999321111  222 23332      


Q ss_pred             -----CCCCCceEEeecCCCCccccccCcc-cChHHHHHhcCCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcccC
Q 024225          146 -----VKPPDVATVLPMDGFHLYLSQLDAM-EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVG  214 (270)
Q Consensus       146 -----~~~p~~g~~i~~dg~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~  214 (270)
                           ..++....+|++....-.++-.+.. +..+.++...|+.......+.+++++.++..+     +.|+.++|||++
T Consensus        84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR  163 (534)
T COG4172          84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR  163 (534)
T ss_pred             HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence                 1233344445555443222211111 12223334455554455566788888888753     458889999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFK  261 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~  261 (270)
                      ||+.++.+++.+|++||-|||+-.||-..+.++.++++.        .+|||||.
T Consensus       164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL  218 (534)
T COG4172         164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL  218 (534)
T ss_pred             hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence            999999999999999999999999999999999988883        38999987

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.83  E-value=3.2e-20  Score=165.83  Aligned_cols=164  Identities=12%  Similarity=0.108  Sum_probs=105.1

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCce
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA  152 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g  152 (270)
                      ..+.++++|+++.  ..    .+|+++||++++|+++||+|+||||||||+++|+|++.   |++|++ +++     ..+
T Consensus        36 ~~~~l~i~nls~~--~~----~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~  101 (282)
T cd03291          36 DDNNLFFSNLCLV--GA----PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RIS  101 (282)
T ss_pred             CCCeEEEEEEEEe--cc----cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEE
Confidence            3456899999985  21    26799999999999999999999999999999999984   566653 222     112


Q ss_pred             EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCC----CcCCCCCCcccCChhhh
Q 024225          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVED  219 (270)
Q Consensus       153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~~S~g~~~rv~~  219 (270)
                       ++.++.+. +.  .+..++.     .++..  .........++.+.         .+.    ...+..+|+|++||+.+
T Consensus       102 -yv~q~~~l-~~--~tv~enl-----~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l  170 (282)
T cd03291         102 -FSSQFSWI-MP--GTIKENI-----IFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL  170 (282)
T ss_pred             -EEeCcccc-cc--cCHHHHh-----hcccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence             23333221 11  1221111     11111  11111112222111         111    11245899999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHh-hc------cceEEecccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKCYATSFKE  262 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~-~~------~~i~v~~~~~  262 (270)
                      +.++..+++++|+|||+..+|....+.+.+. +.      ..|+++|+.+
T Consensus       171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~  220 (282)
T cd03291         171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME  220 (282)
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChH
Confidence            9999999999999999999999877766653 22      2367777654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.83  E-value=9.3e-21  Score=184.59  Aligned_cols=172  Identities=13%  Similarity=0.136  Sum_probs=112.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----  148 (270)
                      .++++++++.|+...  ..+|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++...   .    
T Consensus       313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence            488999999997522  226799999999999999999999999999999999994   666663 222110   0    


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD  215 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~  215 (270)
                      .....++.++.+...   -+..+|.     .++.+ ....+.+...++....         |.+.    ....+|+||+|
T Consensus       388 ~~~i~~v~q~~~lf~---~ti~~Ni-----~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q  458 (569)
T PRK10789        388 RSRLAVVSQTPFLFS---DTVANNI-----ALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ  458 (569)
T ss_pred             HhheEEEccCCeecc---ccHHHHH-----hcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence            011122444432111   1111111     11211 1233333333333221         2121    23479999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      |+++++++..+++++|+|||+..+|....+.+.+.++      ..|.++|+.+
T Consensus       459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~  511 (569)
T PRK10789        459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS  511 (569)
T ss_pred             HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchh
Confidence            9999999999999999999999999988777776664      3367777653

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.7e-21  Score=167.91  Aligned_cols=164  Identities=12%  Similarity=0.107  Sum_probs=116.3

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC------------CCC
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ------------VKP  148 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~------------~~~  148 (270)
                      |+.+.+++..      -+++|+.+..-+.+|.|+||||||||+++|+|+++   |++|.+ .++.            .++
T Consensus         5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~   75 (352)
T COG4148           5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK   75 (352)
T ss_pred             ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence            5566666532      57889998889999999999999999999999996   777763 2221            011


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      -..|. +++|..-.+  ++++..|..+....      .+...+..+.+.++.+  .+.++..+|||++||+++..++...
T Consensus        76 RriGY-VFQDARLFp--H~tVrgNL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~  146 (352)
T COG4148          76 RRIGY-VFQDARLFP--HYTVRGNLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             heeee-Eeecccccc--ceEEecchhhhhcc------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence            12343 666665333  35665544332211      1344566677777765  3678889999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc-------c-ceEEeccccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------E-KCYATSFKET  263 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~-~i~v~~~~~~  263 (270)
                      |++|++|||+..||.+-.+++...+.       . .+||+|..++
T Consensus       147 P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E  191 (352)
T COG4148         147 PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE  191 (352)
T ss_pred             CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence            99999999999999855554444443       2 2899998865

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.83  E-value=1.5e-20  Score=198.54  Aligned_cols=179  Identities=15%  Similarity=0.098  Sum_probs=116.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-C-CCCCCC------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-F-DSQVKP------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~-~~~~~~------  148 (270)
                      .++++||++.|+... ...+|+|+||++++|+++||+||||||||||+++|+|++.   |++|++ + ++....      
T Consensus       382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence            589999999998532 2337799999999999999999999999999999999995   777773 3 221110      


Q ss_pred             --CCceEEeecCCCCccccccCcccChHHHHHhc-C--------------------------------------------
Q 024225          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--------------------------------------------  181 (270)
Q Consensus       149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g--------------------------------------------  181 (270)
                        ...+ ++.++... +.  .+..++..+..... +                                            
T Consensus       458 lr~~Ig-~V~Q~~~L-F~--~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1466)
T PTZ00265        458 WRSKIG-VVSQDPLL-FS--NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE  533 (1466)
T ss_pred             HHHhcc-Eecccccc-hh--ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence              1122 25554432 21  23333322210000 0                                            


Q ss_pred             C------CCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225          182 A------PWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (270)
Q Consensus       182 ~------~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~  242 (270)
                      +      ......+.+.++++.+..         +.    ......+|+||+||+++++++..+|++||+|||+..+|..
T Consensus       534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~  613 (1466)
T PTZ00265        534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK  613 (1466)
T ss_pred             hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence            0      001112233333333221         11    1234589999999999999999999999999999999997


Q ss_pred             hHHHHHHhhc--------cceEEeccccc
Q 024225          243 VWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       243 ~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ..+.+.+.++        ..|+|+|+.+.
T Consensus       614 se~~i~~~L~~~~~~~g~TvIiIsHrls~  642 (1466)
T PTZ00265        614 SEYLVQKTINNLKGNENRITIIIAHRLST  642 (1466)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence            7776666654        23777877643

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.83  E-value=1.2e-20  Score=183.88  Aligned_cols=172  Identities=16%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      ..++++||++.|+.... ..+|+|+||++++||.++|+|+||||||||+|+|+|++.   |++|++ +++...   .+  
T Consensus       336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~  411 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE  411 (576)
T ss_pred             ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            35899999999975211 226799999999999999999999999999999999994   666653 232100   00  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhc---------cCCCc----CCCCCCccc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGV  213 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~  213 (270)
                        ....+++++.+...   -+.       +.+..+. ...+.+.+.+.++..+         .+.+.    ....+|+||
T Consensus       412 ~~~~i~~~~Q~~~lf~---~Ti-------~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq  481 (576)
T TIGR02204       412 LRARMALVPQDPVLFA---ASV-------MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ  481 (576)
T ss_pred             HHHhceEEccCCcccc---ccH-------HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence              01122444443221   111       2222221 1123334444444332         22222    234699999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      +||+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|.|+|+.
T Consensus       482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~  535 (576)
T TIGR02204       482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL  535 (576)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence            999999999999999999999999999976665544443      347777766

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.82  E-value=2.6e-20  Score=178.35  Aligned_cols=175  Identities=14%  Similarity=0.056  Sum_probs=119.6

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      |.++.++++++.|++..    +++++++++.+|+.+||+|+||||||||+|+|+|.+.   |+.|++....   .....+
T Consensus         1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~---~~~v~~   70 (530)
T COG0488           1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPK---GLRVGY   70 (530)
T ss_pred             CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecC---CceEEE
Confidence            45789999999998754    6799999999999999999999999999999999985   7777643221   111222


Q ss_pred             eecCCCCccccccCcccCh-----------------------------HHHHHhcCCCCCcc-HHHHHHHHHhhccCC-C
Q 024225          155 LPMDGFHLYLSQLDAMEDP-----------------------------KEAHARRGAPWTFN-PLLLLNCLKNLRNQG-S  203 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~-----------------------------~~~~~~~g~~~~~~-~~~~~~~l~~l~~~~-~  203 (270)
                      +.++......  .++.+..                             ......+.-...+. ......++..+++.. +
T Consensus        71 l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~  148 (530)
T COG0488          71 LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED  148 (530)
T ss_pred             eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence            4443322111  0110000                             00000000000011 123345555666554 5


Q ss_pred             cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                      ..+..+|||++.|++++.++..+|++|++|||+..||-....-+.+.+.    ..|+|+||.
T Consensus       149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR  210 (530)
T COG0488         149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDR  210 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            6677999999999999999999999999999999999988888877775    347888875

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.82  E-value=1.3e-20  Score=182.74  Aligned_cols=171  Identities=15%  Similarity=0.093  Sum_probs=112.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      .++++|+++.|++..+  .+++|+||++++|+.++|+||||||||||+++|+|++.   |++|++ +++....       
T Consensus       316 ~i~~~~v~~~y~~~~~--~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       316 HLSVENVTIVPPGGKK--PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             eEEEEEEEEEcCCCCc--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence            5899999999975322  26799999999999999999999999999999999984   667763 3331100       


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHH---------HHHhhccCCCc----CCCCCCcccC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLN---------CLKNLRNQGSV----YAPSFDHGVG  214 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~---------~l~~l~~~~~~----~~~~~S~g~~  214 (270)
                      .....++.++.+...   -+..       .+..+ ....+.+.+.+         .++.+..+.+.    ....+|+||+
T Consensus       391 ~~~i~~v~q~~~lf~---~ti~-------~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~  460 (544)
T TIGR01842       391 GKHIGYLPQDVELFP---GTVA-------ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR  460 (544)
T ss_pred             hhheEEecCCccccc---ccHH-------HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence            011222444433211   1211       12111 11122233322         23333223222    3457999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ||+++++++..+++++|+|||+..+|....+.+.+.+.       ..|.++|+.+
T Consensus       461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~  515 (544)
T TIGR01842       461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS  515 (544)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence            99999999999999999999999999977766665443       2367777653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.82  E-value=2.5e-20  Score=181.04  Aligned_cols=162  Identities=14%  Similarity=0.026  Sum_probs=112.2

Q ss_pred             eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      .++++||++.|++... ...+|+|+||++++|++++|+||||||||||+++|+|++                .|+.|. |
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~----------------~p~~G~-i  399 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY----------------IPQEGE-I  399 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------------CCCCcE-E
Confidence            5899999999975311 123679999999999999999999999999999999998                555665 5


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCC-C---------------CCccHHHHHHHHHhhccCCCc--------CCCCCCc
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-P---------------WTFNPLLLLNCLKNLRNQGSV--------YAPSFDH  211 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-~---------------~~~~~~~~~~~l~~l~~~~~~--------~~~~~S~  211 (270)
                      .+||.++....      ....+...++ +               .....+...+.++.+.....+        ....+|+
T Consensus       400 ~~~g~~i~~~~------~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg  473 (555)
T TIGR01194       400 LLDGAAVSADS------RDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST  473 (555)
T ss_pred             EECCEECCCCC------HHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence            56665443210      0111111111 1               111223344555555443321        1247999


Q ss_pred             ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH-hhc-------cceEEeccc
Q 024225          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD-------EKCYATSFK  261 (270)
Q Consensus       212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~-~~~-------~~i~v~~~~  261 (270)
                      ||+||+++++++..+++++|+|||+..+|+...+.+.+ +++       ..|.|+|+.
T Consensus       474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~  531 (555)
T TIGR01194       474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD  531 (555)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence            99999999999999999999999999999988877654 221       337777765

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.82  E-value=1.7e-20  Score=185.36  Aligned_cols=175  Identities=12%  Similarity=0.018  Sum_probs=119.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ..++++||++.|++..   .+++|+||++++||+++|+||||||||||+++|+|++.   +++|++....  ... ..++
T Consensus       450 ~~i~~~nv~~~~~~~~---~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~--~~~-i~~v  520 (659)
T TIGR00954       450 NGIKFENIPLVTPNGD---VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA--KGK-LFYV  520 (659)
T ss_pred             CeEEEEeeEEECCCCC---eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC--CCc-EEEE
Confidence            3589999999996421   26799999999999999999999999999999999984   6677642211  112 2335


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCc-----------CCCCCCcccCChhhhhhhh
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSV-----------YAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~-----------~~~~~S~g~~~rv~~~~~l  223 (270)
                      .++.+...   .+..++..+.....+. ......+.+.++++.+++....           +...+|+||+||+++++++
T Consensus       521 ~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal  597 (659)
T TIGR00954       521 PQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF  597 (659)
T ss_pred             CCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence            66554221   1332222211000001 0112234455666665543211           2358999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE  262 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~  262 (270)
                      ..+|+++|+|||+..+|+...+.+.+.++.    .|.++|+.+
T Consensus       598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~  640 (659)
T TIGR00954       598 YHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKS  640 (659)
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchH
Confidence            999999999999999999888888887763    467777664

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.82  E-value=2.9e-20  Score=160.62  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--CCceEEeecCCCCccccccCcccChHHHHH
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~  178 (270)
                      |++++|+++||+|+||||||||+++|+|++.   |++|++ +++....  .....++..+........++..++......
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            5688999999999999999999999999985   788873 4442110  111222444432211111222222211100


Q ss_pred             -hcCC---CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          179 -RRGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       179 -~~g~---~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                       ..+.   ....+...+.++++.+++..  +..+..+|+|++||++++.++..+++++|+|||+..+|...++.+.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~  157 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI  157 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             0011   11112234566677776653  45667899999999999999999999999999999999988888877776


Q ss_pred             -------cceEEecccc
Q 024225          253 -------EKCYATSFKE  262 (270)
Q Consensus       253 -------~~i~v~~~~~  262 (270)
                             ..|+++|+.+
T Consensus       158 ~~~~~~~tvii~sH~~~  174 (223)
T TIGR03771       158 ELAGAGTAILMTTHDLA  174 (223)
T ss_pred             HHHHcCCEEEEEeCCHH
Confidence                   2377777765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.82  E-value=3.6e-20  Score=177.35  Aligned_cols=171  Identities=15%  Similarity=0.097  Sum_probs=124.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      ..+++++|+++.|++.   ..++.++||.|.+|+.|||+||||+|||||+|+|+|.+.   |.+|++..+..  -..|. 
T Consensus       319 ~~vl~~~~~~~~y~~~---~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~--v~igy-  389 (530)
T COG0488         319 KLVLEFENVSKGYDGG---RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGET--VKIGY-  389 (530)
T ss_pred             CeeEEEeccccccCCC---ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCc--eEEEE-
Confidence            3579999999999764   125699999999999999999999999999999999985   66776544321  11222 


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      +.++...+. ...+.   .+.....  .+. .....+...+..+.+..   ...+..+|||++.|+.++..+..++.+||
T Consensus       390 f~Q~~~~l~-~~~t~---~d~l~~~--~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi  462 (530)
T COG0488         390 FDQHRDELD-PDKTV---LEELSEG--FPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL  462 (530)
T ss_pred             EEehhhhcC-ccCcH---HHHHHhh--Ccc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence            333332211 11111   1122211  111 12456778888888864   24556899999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                      +|||+..||-...+.+.+.+.    ..|+|+||.
T Consensus       463 LDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr  496 (530)
T COG0488         463 LDEPTNHLDIESLEALEEALLDFEGTVLLVSHDR  496 (530)
T ss_pred             EcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            999999999999999988888    348898886

>PLN03073 ABC transporter F family; Provisional

Probab=99.82  E-value=1.4e-20  Score=186.91  Aligned_cols=171  Identities=13%  Similarity=0.081  Sum_probs=112.2

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceE
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~  153 (270)
                      .+.+|+++|+++.|++..    +|+|+||+|.+|+++||+||||||||||+|+|+|..-.     |        .|..|.
T Consensus       174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g--------~p~~g~  236 (718)
T PLN03073        174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID-----G--------IPKNCQ  236 (718)
T ss_pred             CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----C--------CCCCCE
Confidence            345799999999997633    67999999999999999999999999999999996410     1        233333


Q ss_pred             EeecCCCCccccccCccc-----C----------hH-----------------------------------HHHHhcCCC
Q 024225          154 VLPMDGFHLYLSQLDAME-----D----------PK-----------------------------------EAHARRGAP  183 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~-----~----------~~-----------------------------------~~~~~~g~~  183 (270)
                      +.+... .......+..+     .          ..                                   .....++..
T Consensus       237 I~~~~Q-~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  315 (718)
T PLN03073        237 ILHVEQ-EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELI  315 (718)
T ss_pred             EEEEec-cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhc
Confidence            222111 11110111100     0          00                                   000001110


Q ss_pred             CCc-cHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ce
Q 024225          184 WTF-NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KC  255 (270)
Q Consensus       184 ~~~-~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i  255 (270)
                      ..+ .......++..+++.   .+..+..||+|+++|++++.++..+|++||+|||+..||....+.+.+++..    .|
T Consensus       316 ~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tvi  395 (718)
T PLN03073        316 DAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFI  395 (718)
T ss_pred             CcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            000 011233445555553   2345679999999999999999999999999999999999888888888773    37


Q ss_pred             EEecccc
Q 024225          256 YATSFKE  262 (270)
Q Consensus       256 ~v~~~~~  262 (270)
                      .|+|+.+
T Consensus       396 ivsHd~~  402 (718)
T PLN03073        396 VVSHARE  402 (718)
T ss_pred             EEECCHH
Confidence            7777753

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.82  E-value=6.8e-20  Score=155.60  Aligned_cols=141  Identities=26%  Similarity=0.374  Sum_probs=116.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~  184 (270)
                      +++-+|||.|+|||||||+++.|...++                .....+|++|+|+....+.+..+   .....+..|.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~----------------~~~~~~I~~D~YYk~~~~~~~~~---~~~~n~d~p~   66 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLG----------------VEKVVVISLDDYYKDQSHLPFEE---RNKINYDHPE   66 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhC----------------cCcceEeeccccccchhhcCHhh---cCCcCccChh
Confidence            3568999999999999999999999993                22456699999987654444322   1223455688


Q ss_pred             CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY  264 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~  264 (270)
                      ++|.+.+.+.+.+|..|..+..|.||+.+..|..... ...+.+++|+||.+++.|    ++++++++.+|||+++.|+|
T Consensus        67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i-~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~R  141 (218)
T COG0572          67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETI-KVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVR  141 (218)
T ss_pred             hhcHHHHHHHHHHHHcCCcccccccchhcccccCCcc-ccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHH
Confidence            9999999999999999999999999999888886322 335788999999999999    59999999999999999999


Q ss_pred             hhccC
Q 024225          265 FNREA  269 (270)
Q Consensus       265 ~~r~~  269 (270)
                      +.||.
T Consensus       142 liRri  146 (218)
T COG0572         142 LIRRI  146 (218)
T ss_pred             HHHHH
Confidence            99974

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.81  E-value=2.3e-20  Score=197.16  Aligned_cols=174  Identities=14%  Similarity=0.095  Sum_probs=118.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc---------------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------------  141 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~---------------  141 (270)
                      .++++||++.|++... ..+|+|+||+|++|+.+||+||||||||||+++|.|++.   |+.|..               
T Consensus      1165 ~I~f~nVsF~Y~~~~~-~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPN-VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred             eEEEEEEEEECCCCCC-CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence            4899999999975321 236799999999999999999999999999999999995   532210               


Q ss_pred             --------------------------CCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHH
Q 024225          142 --------------------------FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL  195 (270)
Q Consensus       142 --------------------------~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l  195 (270)
                                                -......|+.|. |.+||.++.+..      ...++..+++..|...-.-.++.
T Consensus      1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~idG~di~~~~------~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265       1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK-ILLDGVDICDYN------LKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCe-EEECCEEHHhCC------HHHHHhhccEeCCCCccccccHH
Confidence                                      000122357888 899998765421      12234444442111111112333


Q ss_pred             HhhccC----------------------------CCc----CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhh
Q 024225          196 KNLRNQ----------------------------GSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (270)
Q Consensus       196 ~~l~~~----------------------------~~~----~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~  243 (270)
                      +||.++                            -+.    ....+||||+||+++++++..+|++||+||++..||...
T Consensus      1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265       1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            333322                            122    123689999999999999999999999999999999976


Q ss_pred             HHHHHHhhc--------cceEEeccc
Q 024225          244 WKDVSSMFD--------EKCYATSFK  261 (270)
Q Consensus       244 ~~~l~~~~~--------~~i~v~~~~  261 (270)
                      .+.+.+.++        ..|.|+|..
T Consensus      1394 E~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265       1394 EKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEechH
Confidence            666665554        236777765

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.81  E-value=4.3e-20  Score=153.93  Aligned_cols=132  Identities=14%  Similarity=0.046  Sum_probs=96.1

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~  173 (270)
                      +.+++|+||++++|++++|+||||||||||+++|.+       +             .|. +.+++..      +...  
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~-------------~G~-v~~~~~~------~~~~--   58 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------A-------------SGK-ARLISFL------PKFS--   58 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------c-------------CCc-EEECCcc------cccc--
Confidence            347899999999999999999999999999998843       1             233 3333331      0000  


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC--CcEEEEeCCCCCCChhhHHHHH
Q 024225          174 KEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVS  248 (270)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~--~~ilIld~~~~~lDe~~~~~l~  248 (270)
                         .....+..+      .+.++.+.+..   +..+..+|+|++||++++.++..+  ++++|+|||+..+|....+.+.
T Consensus        59 ---~~~~~~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~  129 (176)
T cd03238          59 ---RNKLIFIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL  129 (176)
T ss_pred             ---cccEEEEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence               011122111      45667776642   456679999999999999999999  9999999999999998777777


Q ss_pred             Hhhcc-------ceEEeccccc
Q 024225          249 SMFDE-------KCYATSFKET  263 (270)
Q Consensus       249 ~~~~~-------~i~v~~~~~~  263 (270)
                      +.+..       .|+++|+.+.
T Consensus       130 ~~l~~~~~~g~tvIivSH~~~~  151 (176)
T cd03238         130 EVIKGLIDLGNTVILIEHNLDV  151 (176)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHH
Confidence            76653       2788888754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.81  E-value=4.7e-20  Score=164.54  Aligned_cols=148  Identities=22%  Similarity=0.335  Sum_probs=116.3

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      .+...+|||+||||||||||+++|.+++.+ |++           .....++.+||++.....+....    .....|++
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~-----------~g~V~vi~~D~f~~~~~~l~~~g----~~~~~g~P  122 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSR-WPE-----------HRKVELITTDGFLHPNQVLKERN----LMKKKGFP  122 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCC-----------CCceEEEecccccccHHHHHHcC----CccccCCC
Confidence            356799999999999999999999999842 111           11345689999976532221111    22457889


Q ss_pred             CCccHHHHHHHHHhhccCCC-cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCC------hhhHHHHHHhhccceE
Q 024225          184 WTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKCY  256 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lD------e~~~~~l~~~~~~~i~  256 (270)
                      .+++...+.+.+..+..|.. +..|.||+...+++.....+..+++|||+||.+++.+      ++.|..+.+++|++||
T Consensus       123 ~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iy  202 (290)
T TIGR00554       123 ESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIY  202 (290)
T ss_pred             hhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEE
Confidence            99999999999999999875 8999999999998876655557899999999998854      4568899999999999


Q ss_pred             Eeccccchhhc
Q 024225          257 ATSFKETYFNR  267 (270)
Q Consensus       257 v~~~~~~~~~r  267 (270)
                      |+++.+++..|
T Consensus       203 vDa~~d~~~~w  213 (290)
T TIGR00554       203 VDAEEDLLQTW  213 (290)
T ss_pred             EECCHHHHHHH
Confidence            99999887643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=8e-20  Score=154.96  Aligned_cols=159  Identities=21%  Similarity=0.163  Sum_probs=108.3

Q ss_pred             cceEEeccchhhhhhh-hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceE
Q 024225           75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~-~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~  153 (270)
                      |.+++++||+...++. .    +|+++|++|++||+.+|+||||||||||++.|+|.-+              ...+.|.
T Consensus         1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~--------------Y~Vt~G~   62 (251)
T COG0396           1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK--------------YEVTEGE   62 (251)
T ss_pred             CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------------ceEecce
Confidence            3578999999999874 3    6799999999999999999999999999999999742              1455666


Q ss_pred             EeecCCCCccccc------------------cCcccChHHHH----HhcCCCC--CccHHHHHHHHHhhccCC---CcCC
Q 024225          154 VLPMDGFHLYLSQ------------------LDAMEDPKEAH----ARRGAPW--TFNPLLLLNCLKNLRNQG---SVYA  206 (270)
Q Consensus       154 ~i~~dg~~~~~~~------------------l~~~~~~~~~~----~~~g~~~--~~~~~~~~~~l~~l~~~~---~~~~  206 (270)
                       |.+||.++..-.                  ++.....++++    ...+...  ......+.+.++.+.+..   +.+.
T Consensus        63 -I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~v  141 (251)
T COG0396          63 -ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYV  141 (251)
T ss_pred             -EEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhccc
Confidence             677776654310                  11111112221    1111100  001122334455555543   1122


Q ss_pred             -CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          207 -PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       207 -~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                       --||||+++|.++...+.+.|++.|+|||-+++|-...+.+.+.++
T Consensus       142 N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~  188 (251)
T COG0396         142 NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN  188 (251)
T ss_pred             CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence             3789999999999999999999999999999999766666655555

>PRK13409 putative ATPase RIL; Provisional

Probab=99.81  E-value=1.5e-20  Score=183.21  Aligned_cols=169  Identities=15%  Similarity=0.082  Sum_probs=108.4

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe-ecCCC
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-PMDGF  160 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i-~~dg~  160 (270)
                      ++++.|+..   -.+|++++ .+++|+++||+||||||||||+|+|+|++.   |+.|++...    +..-.++ .++|.
T Consensus        78 ~~~~~yg~~---~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~----~~~~~~~~~~~G~  146 (590)
T PRK13409         78 EPVHRYGVN---GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEE----PSWDEVLKRFRGT  146 (590)
T ss_pred             CceEEecCC---ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCC----CcHHHHHHHhCCh
Confidence            488889752   12679999 899999999999999999999999999984   666654210    0000000 02222


Q ss_pred             Cccccc-------cCc---cc----ChH----HHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225          161 HLYLSQ-------LDA---ME----DPK----EAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       161 ~~~~~~-------l~~---~~----~~~----~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~  220 (270)
                      .+....       ...   .+    .+.    ........  ......+.++++.+.+..  +..+..||+||+||++++
T Consensus       147 ~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia  224 (590)
T PRK13409        147 ELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKK--VDERGKLDEVVERLGLENILDRDISELSGGELQRVAIA  224 (590)
T ss_pred             HHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHh--hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            211000       000   00    000    00000000  011233456677766653  566779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      .++..+++++|+|||+..||......+.+++..      .|+++|+.+.
T Consensus       225 ~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~  273 (590)
T PRK13409        225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV  273 (590)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            999999999999999999999877777766663      3778887643

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.6e-20  Score=172.09  Aligned_cols=168  Identities=11%  Similarity=0.043  Sum_probs=112.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-------
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-------  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-------  149 (270)
                      ++.+|+++.|++.+   .++.|+||++++|+.++|+|+||||||||+++|+|+++   |+.|++ +++.....       
T Consensus       321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~  394 (559)
T COG4988         321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR  394 (559)
T ss_pred             eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence            55679999998753   27799999999999999999999999999999999994   566663 22211111       


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc--------CCCcCCC----CCCcccCCh
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN--------QGSVYAP----SFDHGVGDP  216 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~--------~~~~~~~----~~S~g~~~r  216 (270)
                      .....+.++++-...   +       .+.+..+ ..+...+.+.++++..+.        |.+..+.    .+|+||.||
T Consensus       395 k~i~~v~Q~p~lf~g---T-------ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR  464 (559)
T COG4988         395 KQISWVSQNPYLFAG---T-------IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR  464 (559)
T ss_pred             hHeeeeCCCCccccc---c-------HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence            112234444442221   1       1222222 111233445555554443        2233233    489999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      +++++++..+++++++|||+..+|.+.-+.+.+.+.      ..++++|..
T Consensus       465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl  515 (559)
T COG4988         465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRL  515 (559)
T ss_pred             HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcCh
Confidence            999999999999999999999999865555555444      337777766

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.80  E-value=1.4e-19  Score=156.22  Aligned_cols=140  Identities=24%  Similarity=0.330  Sum_probs=109.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  188 (270)
                      +|||+|+||||||||++.|.+++..   +.         ......++++|+++.....+.  +.  ......|++.+++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~---~~---------~~~~v~vi~~D~f~~~~~~~~--~~--~~~~~~g~p~~~d~   64 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR---WP---------DHPNVELITTDGFLYPNKELI--ER--GLMDRKGFPESYDM   64 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh---cC---------CCCcEEEEecCcccCcHHHHH--Hh--hhhhcCCCcccCCH
Confidence            5899999999999999999999841   00         112345689999975532211  11  11234677889999


Q ss_pred             HHHHHHHHhhccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh-hhHHHHHHhhccceEEeccccch
Q 024225          189 LLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKCYATSFKETY  264 (270)
Q Consensus       189 ~~~~~~l~~l~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe-~~~~~l~~~~~~~i~v~~~~~~~  264 (270)
                      ..+.++++.+..+ ..+..|.||+...++.........+++++|+||.+++.++ ..|..+.+++|.+|||+++.+++
T Consensus        65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~  142 (220)
T cd02025          65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDI  142 (220)
T ss_pred             HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHH
Confidence            9999999999984 6889999999999888765544567899999999999884 57888999999999999999885

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PTZ00301 uridine kinase; Provisional

Probab=99.79  E-value=2.9e-19  Score=152.91  Aligned_cols=142  Identities=22%  Similarity=0.328  Sum_probs=112.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN  187 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~  187 (270)
                      .+|||.|+||||||||++.|...+.+.+            .+....++.+|+|+..+..++..+   ....+++.|+++|
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~------------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D   68 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHC------------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE   68 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhc------------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence            6899999999999999999987663100            233455689999987654443221   1234677789999


Q ss_pred             HHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhc
Q 024225          188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR  267 (270)
Q Consensus       188 ~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r  267 (270)
                      .+.+.+.+..+..++.+..|.|++....+......+ .+.+++|+||.+++.++    ++.+++|.+|||+++.++++.|
T Consensus        69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~~i-~p~~ViIvEGi~~l~~~----~l~~l~D~~ifvd~~~d~~~~R  143 (210)
T PTZ00301         69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTNA----ELRNEMDCLIFVDTPLDICLIR  143 (210)
T ss_pred             HHHHHHHHHHHHcCCcccCCCcccccCCcCCceEEe-CCCcEEEEechhhhCCH----HHHHhCCEEEEEeCChhHHHHH
Confidence            999999999999999999999999888777544433 45699999999998784    8999999999999999999998


Q ss_pred             cC
Q 024225          268 EA  269 (270)
Q Consensus       268 ~~  269 (270)
                      |+
T Consensus       144 r~  145 (210)
T PTZ00301        144 RA  145 (210)
T ss_pred             HH
Confidence            75

>PLN03130 ABC transporter C family member; Provisional

Probab=99.79  E-value=8.7e-20  Score=194.44  Aligned_cols=170  Identities=12%  Similarity=0.050  Sum_probs=112.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|+...  -.+|+|+||+|++||.|||+|++|||||||+++|.|++.   |++|++ +|+...        
T Consensus      1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence            589999999996421  136799999999999999999999999999999999994   555542 222100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCcC----CCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~~  214 (270)
                      +.. ..+|++|.+...   -+       .+.++........+.+.+.++...         .|.+..    ...+|+||+
T Consensus      1312 R~~-IsiVpQdp~LF~---GT-------IreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130       1312 RKV-LGIIPQAPVLFS---GT-------VRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred             Hhc-cEEECCCCcccc---cc-------HHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence            011 122444443211   01       222222222233344444444332         222222    237999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      ||+++++++..++++||+||++..+|...-+.+.+.++      ..|.|+|...
T Consensus      1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~ 1434 (1622)
T PLN03130       1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1434 (1622)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChH
Confidence            99999999999999999999999999877666666665      2366666553

>PLN03232 ABC transporter C family member; Provisional

Probab=99.79  E-value=6.3e-20  Score=194.91  Aligned_cols=170  Identities=14%  Similarity=0.059  Sum_probs=113.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----  148 (270)
                      .++++||++.|+...  -.+|+|+||+|++||.|||+|+||||||||+++|.|++.   |++|++ +|+...   .    
T Consensus      1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence            489999999996421  236799999999999999999999999999999999994   555552 232100   0    


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD  215 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~  215 (270)
                      -....++++|.+...   -+       .+.+.........+.+.+.++....         |.+.    ....+|+||+|
T Consensus      1309 R~~i~iVpQdp~LF~---gT-------Ir~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232       1309 RRVLSIIPQSPVLFS---GT-------VRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred             HhhcEEECCCCeeeC---cc-------HHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence            011122444443211   01       2223332223334444444443322         2222    22379999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      |+++++++..++++||+||++..+|...-+.+.+.++      ..|.|+|..
T Consensus      1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232       1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred             HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            9999999999999999999999999977666666665      236666665

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.79  E-value=1.9e-19  Score=156.59  Aligned_cols=144  Identities=33%  Similarity=0.559  Sum_probs=126.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      -...-+|||.|+.|+||||+++.|.-++.+ |+.          .| ...++++|||+.++..+...    -.+.+.|+|
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~----------~~-~v~lvpmDGFhy~n~~L~~~----glm~rKGfP  142 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLSR-WPE----------SP-KVDLVTMDGFHYPNAVLDER----GLMARKGFP  142 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHhh-CCC----------CC-ceEEEeccccccCHhHhhhc----cccccCCCC
Confidence            456789999999999999999999999953 221          33 46779999999887655533    367789999


Q ss_pred             CCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEecccc
Q 024225          184 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKE  262 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~  262 (270)
                      ++||...+.+++..++.+. ++..|.|||-..+.++.+..+..++||||+||..+++|+..|-.+.+++|++||||++.+
T Consensus       143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~  222 (283)
T COG1072         143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEE  222 (283)
T ss_pred             ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHH
Confidence            9999999999999999765 599999999999999999999999999999999999999999999999999999999984


Q ss_pred             c
Q 024225          263 T  263 (270)
Q Consensus       263 ~  263 (270)
                      .
T Consensus       223 ~  223 (283)
T COG1072         223 L  223 (283)
T ss_pred             H
Confidence            3

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.79  E-value=1.7e-19  Score=151.57  Aligned_cols=184  Identities=17%  Similarity=0.102  Sum_probs=115.7

Q ss_pred             EEeccchhhhhhhh-cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225           78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P----  149 (270)
Q Consensus        78 l~~~~l~~~y~~~~-~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p----  149 (270)
                      +++.|+.+.|.... ..-.+|+++|++|++|++|.|+|.||||||||++.|+|.+.   +++|.+ +++..+.  |    
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~R   78 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAKR   78 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHHH
Confidence            45567777764322 22347799999999999999999999999999999999983   444442 2221000  0    


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHH---hcCCCCCcc---HHHHHHHHHhhccCC----CcCCCCCCcccCChh
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFN---PLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV  217 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~---~~g~~~~~~---~~~~~~~l~~l~~~~----~~~~~~~S~g~~~rv  217 (270)
                        ..+. |++|...-.-+.++..+|......   ++|+.....   ...+.+-+..+.++.    .-.+.-|||||+|-+
T Consensus        79 A~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal  157 (263)
T COG1101          79 ANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL  157 (263)
T ss_pred             hhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence              0111 233322222233455555433332   234422112   223344455555553    335568999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      .+..+...+++++++||-+..|||...+.+.++-+        ..+-|+|+.+.++
T Consensus       158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al  213 (263)
T COG1101         158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL  213 (263)
T ss_pred             HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHH
Confidence            99999999999999999999999966655555444        2356677665443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.79  E-value=1.9e-19  Score=143.59  Aligned_cols=177  Identities=15%  Similarity=0.089  Sum_probs=121.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC-CCC------CCCC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQ------VKPP  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~-~~~------~~~p  149 (270)
                      ++.++||+..-++..    .|.++||+|.+||||.|+||||||||||+.-+.|.+.--+...|+++ ++.      ...-
T Consensus         2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR   77 (213)
T ss_pred             ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence            356788888887755    67999999999999999999999999999999999964444466632 221      1122


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ..|. +.+|....  +++++.+|..+.... .+............++.+++.+  ...+..+||||+.|+++.+++...|
T Consensus        78 q~Gi-LFQD~lLF--phlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P  153 (213)
T COG4136          78 QIGI-LFQDALLF--PHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP  153 (213)
T ss_pred             heee-eecccccc--cccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence            3443 66766533  335665544321100 0000011123345566766654  4567799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK  261 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~  261 (270)
                      +++++||||.-+|...+.+.++..-        -.+.|+||.
T Consensus       154 k~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~  195 (213)
T COG4136         154 KALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL  195 (213)
T ss_pred             ceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence            9999999999999766666555443        237888887

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.79  E-value=2.6e-19  Score=188.85  Aligned_cols=184  Identities=12%  Similarity=0.086  Sum_probs=124.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CCce
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PDVA  152 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~~g  152 (270)
                      +++++||++.|+.......+|+|+|+++++|+++||+||||||||||+++|+|++....+++|++ +++....   ....
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i  838 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI  838 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence            47899999999632222347799999999999999999999999999999999984222466774 4442111   1112


Q ss_pred             EEeecCCCCccccccCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhccCC--CcCCC----CCCcccCChhhhhhh
Q 024225          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG--SVYAP----SFDHGVGDPVEDDIL  222 (270)
Q Consensus       153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~l~~~~--~~~~~----~~S~g~~~rv~~~~~  222 (270)
                      .++.+++..+.  .+++.++..+..... .+...    ....+.++++.+++..  +..+.    .+|+||+||+.++.+
T Consensus       839 ~yv~Q~~~~~~--~~Tv~E~L~~~a~l~-~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a  915 (1394)
T TIGR00956       839 GYVQQQDLHLP--TSTVRESLRFSAYLR-QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE  915 (1394)
T ss_pred             eeecccccCCC--CCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence            23666554333  256666555433222 11111    1234567777776643  33332    699999999999999


Q ss_pred             hccCCc-EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          223 VGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       223 l~~~~~-ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +..+++ +|++|||+.+||......+.++++.       .|.++|+.+.
T Consensus       916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~  964 (1394)
T TIGR00956       916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA  964 (1394)
T ss_pred             HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence            999997 9999999999999777777666652       2566665543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.78  E-value=4.1e-20  Score=147.19  Aligned_cols=118  Identities=23%  Similarity=0.283  Sum_probs=85.4

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHH
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~  176 (270)
                      |+|++|++++|++++|+|+||||||||+++|+|.+                .|..|. +.+++..+..      ......
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~----------------~~~~G~-i~~~~~~~~~------~~~~~~   57 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL----------------PPDSGS-ILINGKDISD------IDIEEL   57 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS----------------HESEEE-EEETTEEGTT------SHHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccc----------------cccccc-cccccccccc------cccccc
Confidence            58999999999999999999999999999999998                567777 7777765433      111122


Q ss_pred             HHhcCC-CCCc------------cHHHHHHHHHhhccCC--CcC----CCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225          177 HARRGA-PWTF------------NPLLLLNCLKNLRNQG--SVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (270)
Q Consensus       177 ~~~~g~-~~~~------------~~~~~~~~l~~l~~~~--~~~----~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~  237 (270)
                      ....++ ++..            .......+++.+....  ...    ...+|+|+++|+.++.++..+++++|+|||+.
T Consensus        58 ~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   58 RRRIGYVPQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            233332 2211            1123445555555432  233    37999999999999999999999999999974

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PTZ00243 ABC transporter; Provisional

Probab=99.78  E-value=1.8e-19  Score=191.70  Aligned_cols=169  Identities=11%  Similarity=0.057  Sum_probs=111.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .|+++||++.|++..  ..+|+|+||+|++||.|||+|++|||||||+++|.|++.   |++|++ +|+...        
T Consensus      1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence            499999999997532  236799999999999999999999999999999999994   555542 222100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---------CCcC----CCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~~S~g~~  214 (270)
                      +. ...+|++|.+...   -+       .+.++........+.+.+.++..++.         .+..    ...||+||+
T Consensus      1383 R~-~I~iVpQdp~LF~---gT-------IreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243       1383 RR-QFSMIPQDPVLFD---GT-------VRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred             Hh-cceEECCCCcccc---cc-------HHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence            01 1122444433211   11       12222222223344455555544332         2221    247999999


Q ss_pred             ChhhhhhhhccC-CcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       215 ~rv~~~~~l~~~-~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      ||+++++++..+ +++||+||++..+|....+.+.+.++      ..|.|+|..
T Consensus      1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl 1505 (1560)
T PTZ00243       1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRL 1505 (1560)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccH
Confidence            999999999885 89999999999999977777766654      225566554

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.78  E-value=5e-19  Score=164.35  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             ccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCC
Q 024225           71 QQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD  150 (270)
Q Consensus        71 ~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~  150 (270)
                      +|+..-.+.++++...=++.+  ..+++++||++.+||.+||+||||||||||.|+|.|..                +|.
T Consensus       328 LP~P~g~L~Ve~l~~~PPg~~--~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w----------------~p~  389 (580)
T COG4618         328 LPAPQGALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW----------------PPT  389 (580)
T ss_pred             CCCCCceeeEeeeeecCCCCC--CcceecceeEecCCceEEEECCCCccHHHHHHHHHccc----------------ccC
Confidence            344445689999998776644  33569999999999999999999999999999999997                677


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCC-CCCcc------------------HHHH---------HHHHHhhccCC
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFN------------------PLLL---------LNCLKNLRNQG  202 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~------------------~~~~---------~~~l~~l~~~~  202 (270)
                      .|. |.+||.++..  ++    .+...+..|+ |++..                  .+.+         .+++-.+-.|-
T Consensus       390 ~G~-VRLDga~l~q--Wd----~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY  462 (580)
T COG4618         390 SGS-VRLDGADLRQ--WD----REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY  462 (580)
T ss_pred             CCc-EEecchhhhc--CC----HHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc
Confidence            787 8888876543  11    2234445555 43221                  1111         11222222232


Q ss_pred             CcCC----CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          203 SVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       203 ~~~~----~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +..+    ..+|+||+||+++++++-.+|+++++|||-.-||+.--..+.+.+.
T Consensus       463 dT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~  516 (580)
T COG4618         463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL  516 (580)
T ss_pred             cCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence            3322    2789999999999999999999999999999999876666666555

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.77  E-value=2.7e-19  Score=190.44  Aligned_cols=169  Identities=15%  Similarity=0.049  Sum_probs=112.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|+....  .+|+|+||+|++||.|||+|++|||||||+++|.|++.   |++|++ +|+...        
T Consensus      1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence            5899999999975321  37799999999999999999999999999999999993   445542 222100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~  214 (270)
                      +. ...++++|.+....   +       .+.+.........+.+.+.++....         |.+..    ...+|+||+
T Consensus      1359 R~-~i~iVpQdp~LF~g---T-------Ir~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957      1359 RF-KITIIPQDPVLFSG---S-------LRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred             Hh-cCeEECCCCcccCc---c-------HHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence            01 11124444332111   1       2222221112333444444443332         22222    246999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      ||+++++++..++++||+||++..+|...-+.+.+.++      ..|.|+|..
T Consensus      1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl 1480 (1522)
T TIGR00957      1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480 (1522)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence            99999999999999999999999999977777766665      236666655

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.77  E-value=4.5e-19  Score=163.88  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=103.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      -++++||++.|+...   .+|+||||++.+|+.++|+||||+||||++|+|.++.                .-.+|. |.
T Consensus       537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff----------------dv~sGs-I~  596 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF----------------DVNSGS-IT  596 (790)
T ss_pred             eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh----------------hccCce-EE
Confidence            589999999998643   2679999999999999999999999999999999998                334444 55


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-C-------------------CCccHHHH-----HHHHHhhcc-CC--C----c
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-P-------------------WTFNPLLL-----LNCLKNLRN-QG--S----V  204 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~-------------------~~~~~~~~-----~~~l~~l~~-~~--~----~  204 (270)
                      +||+++.+...      ...+..+|+ |                   .+-+.+-.     ..+-+.+.. .+  .    -
T Consensus       597 iDgqdIrnvt~------~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE  670 (790)
T KOG0056|consen  597 IDGQDIRNVTQ------SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE  670 (790)
T ss_pred             EcCchHHHHHH------HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence            55554432110      112223333 2                   11111111     111222221 11  1    1


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +.-.+|||++||+++++.+...|.++++||.+..||-+.-+.+...+.
T Consensus       671 RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~  718 (790)
T KOG0056|consen  671 RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA  718 (790)
T ss_pred             cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence            223789999999999999999999999999999999877777766655

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.75  E-value=1.4e-18  Score=158.30  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=100.0

Q ss_pred             EECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCC
Q 024225          112 LAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (270)
Q Consensus       112 L~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~  185 (270)
                      |+||||||||||+++|+|++.   |++|++ +++...   .+  ....++.++... + +.+++.++..+.....+....
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l-~-~~~tv~enl~~~~~~~~~~~~   75 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYAL-F-PHMTVEENVAFGLKMRKVPRA   75 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccc-c-CCCcHHHHHHHHHhhcCCCHH
Confidence            689999999999999999986   888884 443211   11  112235554322 1 235555555443322232211


Q ss_pred             ccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cce
Q 024225          186 FNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKC  255 (270)
Q Consensus       186 ~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i  255 (270)
                      .....+.++++.+++..  +.++..+|+||+||+++++++..+++++|+|||+..+|...++.+.+.+.        ..|
T Consensus        76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii  155 (325)
T TIGR01187        76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV  155 (325)
T ss_pred             HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            11234566777776653  55677999999999999999999999999999999999987777776664        237


Q ss_pred             EEeccccc
Q 024225          256 YATSFKET  263 (270)
Q Consensus       256 ~v~~~~~~  263 (270)
                      +++|+.++
T Consensus       156 ivTHd~~e  163 (325)
T TIGR01187       156 FVTHDQEE  163 (325)
T ss_pred             EEeCCHHH
Confidence            88888764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.75  E-value=5.2e-18  Score=146.97  Aligned_cols=168  Identities=13%  Similarity=0.027  Sum_probs=96.0

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHH-HHHHHHhc-----ccCCCCcccCCCCCCCCC-------ceEEeecCCC
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRIN-----KIWPQKASSFDSQVKPPD-------VATVLPMDGF  160 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLl-k~L~gll~-----~~~~~~G~~~~~~~~~p~-------~g~~i~~dg~  160 (270)
                      +.+|+++||++++||++||+||||||||||+ ..|...-+     .+.+..+.. .+....|.       ...+...++.
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   86 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQF-LGQMDKPDVDSIEGLSPAIAIDQKT   86 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhh-hcccCccccccccCCCceEEecCCC
Confidence            3478999999999999999999999999996 33321100     000000000 00000111       1111222222


Q ss_pred             CccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCC--cEEEEeC
Q 024225          161 HLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDG  234 (270)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~--~ilIld~  234 (270)
                      ....+...... .......+ ............+.++.+.+..   +.++..+|+|++||+.++.++..++  +++|+||
T Consensus        87 ~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE  165 (226)
T cd03270          87 TSRNPRSTVGT-VTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE  165 (226)
T ss_pred             CCCCCCccHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            11111111000 00000000 0111111222345677776643   4567799999999999999998886  6999999


Q ss_pred             CCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          235 NYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       235 ~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      |+..+|...++.+.+++.       ..|+++|+.+.
T Consensus       166 Pt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~  201 (226)
T cd03270         166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT  201 (226)
T ss_pred             CccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH
Confidence            999999988888777765       23788888754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.74  E-value=2.7e-18  Score=182.86  Aligned_cols=165  Identities=12%  Similarity=0.071  Sum_probs=112.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEe
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i  155 (270)
                      .++++|+++.|++..  ..+|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++     . ..++
T Consensus       636 ~i~~~~~~~~~~~~~--~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~-i~yv  704 (1522)
T TIGR00957       636 SITVHNATFTWARDL--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----S-VAYV  704 (1522)
T ss_pred             cEEEEEeEEEcCCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----E-EEEE
Confidence            589999999997522  226799999999999999999999999999999999984   566653 221     1 1224


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh------hc---cCCC----cCCCCCCcccCChhhhhhh
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LR---NQGS----VYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~------l~---~~~~----~~~~~~S~g~~~rv~~~~~  222 (270)
                      .++... ..  .+..       .++-+...++.+...++++.      +.   .+.+    .....+||||+||++++++
T Consensus       705 ~Q~~~l-~~--~Ti~-------eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA  774 (1522)
T TIGR00957       705 PQQAWI-QN--DSLR-------ENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA  774 (1522)
T ss_pred             cCCccc-cC--CcHH-------HHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence            444321 11  1222       22222112233333333322      21   2221    2345899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEecccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKE  262 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~  262 (270)
                      +..+++++++|||+..+|....+++.+.+.         ..|.++|+.+
T Consensus       775 l~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~  823 (1522)
T TIGR00957       775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS  823 (1522)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh
Confidence            999999999999999999988877766552         3478887763

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.74  E-value=3.9e-18  Score=181.15  Aligned_cols=169  Identities=14%  Similarity=0.112  Sum_probs=115.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC--C----
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK--P----  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~--~----  148 (270)
                      .++++||++.|+...  ..+|+|+||+|++||.|||+|+||||||||+++|.|++    +.+|++ +++. ..  .    
T Consensus      1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence            589999999997522  23679999999999999999999999999999999998    356663 3331 00  0    


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD  215 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~  215 (270)
                      -....+|++|.+....   +.       +.++.....+..+.+.++++..++         |.+..    ...||+||+|
T Consensus      1291 R~~is~IpQdp~LF~G---TI-------R~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271      1291 RKAFGVIPQKVFIFSG---TF-------RKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred             HhceEEEeCCCccCcc---CH-------HHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence            0122335665543221   22       222222222344555555555443         22222    2269999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      |+.+++++..+++|||+||++..+|...-+.+.+.+.      ..|.|+|..
T Consensus      1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271      1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred             HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence            9999999999999999999999999877666666665      226666654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.74  E-value=4.9e-18  Score=172.58  Aligned_cols=177  Identities=16%  Similarity=0.150  Sum_probs=130.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------  147 (270)
                      ..+.+++++|.|+....   |++++++.|++||+.|+.|+|||||||++++|.|..+   |++|+. ..++..       
T Consensus       563 ~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~~  636 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDFQ  636 (885)
T ss_pred             ceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccchh
Confidence            56889999999987543   7899999999999999999999999999999999985   777772 222211       


Q ss_pred             --CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       148 --~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                        ....|. .++.+-  ....++..|..+...+..|+++..-...+...++.+++..  +...+.||+|+++|+..+.++
T Consensus       637 ~~~~~iGy-CPQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial  713 (885)
T KOG0059|consen  637 QVRKQLGY-CPQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL  713 (885)
T ss_pred             hhhhhccc-CCchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence              111232 333322  2233666777777777788765444445667777777653  566789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChh----hHHHHHHhhcc--ceEEeccc
Q 024225          224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KCYATSFK  261 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~----~~~~l~~~~~~--~i~v~~~~  261 (270)
                      ...|+++++|||..++|+.    .|.-+.++.+.  .+-+|.+.
T Consensus       714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs  757 (885)
T KOG0059|consen  714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS  757 (885)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            9999999999999999984    45555555542  34444444

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.73  E-value=8.9e-18  Score=165.07  Aligned_cols=153  Identities=14%  Similarity=0.054  Sum_probs=105.6

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCceEEeecCCCCccccccCc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDVATVLPMDGFHLYLSQLDA  169 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~g~~i~~dg~~~~~~~l~~  169 (270)
                      +|+|+|+++++||+++|+||||||||||+++|+|........+|++ +++....     ...+ ++.+++.....  +++
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~Q~~~~~~~--lTV  116 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQQDDLFIPT--LTV  116 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eeccccccCcc--CcH
Confidence            6799999999999999999999999999999999874111125663 3332111     1223 36666544332  566


Q ss_pred             ccChHHHHHhcCCCC----CccHHHHHHHHHhhccCC--CcCC------CCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225          170 MEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG--SVYA------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (270)
Q Consensus       170 ~~~~~~~~~~~g~~~----~~~~~~~~~~l~~l~~~~--~~~~------~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~  237 (270)
                      .++..+... ...+.    ......+.++++.+++..  +..+      ..+|+||+||+.++.++..+|+++++|||+.
T Consensus       117 ~e~l~f~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts  195 (617)
T TIGR00955       117 REHLMFQAH-LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS  195 (617)
T ss_pred             HHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence            665554332 22222    112234567777776642  3333      3599999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhhc
Q 024225          238 FLDGGVWKDVSSMFD  252 (270)
Q Consensus       238 ~lDe~~~~~l~~~~~  252 (270)
                      +||......+.+.++
T Consensus       196 gLD~~~~~~l~~~L~  210 (617)
T TIGR00955       196 GLDSFMAYSVVQVLK  210 (617)
T ss_pred             chhHHHHHHHHHHHH
Confidence            999977777666665

>PRK05439 pantothenate kinase; Provisional

Probab=99.73  E-value=5.9e-18  Score=152.16  Aligned_cols=144  Identities=26%  Similarity=0.352  Sum_probs=114.9

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~  184 (270)
                      ...-+|||.|++||||||+++.|..++.+. +           ......++.+|||+..+..+..    .....+.|+|+
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~-~-----------~~~~v~vi~~DdFy~~~~~l~~----~~l~~~kg~Pe  147 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRW-P-----------EHPKVELVTTDGFLYPNAVLEE----RGLMKRKGFPE  147 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhh-C-----------CCCceEEEeccccccCHHHHhh----hhccccCCCcc
Confidence            456799999999999999999999988410 0           1223556999999876543321    11334578899


Q ss_pred             CccHHHHHHHHHhhccCCC-cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh--hHHHHHHhhccceEEeccc
Q 024225          185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKCYATSFK  261 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~--~~~~l~~~~~~~i~v~~~~  261 (270)
                      ++|...+.++++.++.|.. +..|.||+....++........+++|||+||.+++.++.  .|..+.+++|++|||+++.
T Consensus       148 s~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~  227 (311)
T PRK05439        148 SYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADE  227 (311)
T ss_pred             cccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCH
Confidence            9999999999999999986 899999999998886555555688999999999886554  6889999999999999999


Q ss_pred             cch
Q 024225          262 ETY  264 (270)
Q Consensus       262 ~~~  264 (270)
                      ++.
T Consensus       228 ~~~  230 (311)
T PRK05439        228 DLI  230 (311)
T ss_pred             HHH
Confidence            873

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.73  E-value=9.4e-18  Score=156.77  Aligned_cols=171  Identities=21%  Similarity=0.166  Sum_probs=122.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~  153 (270)
                      .|++.+.|+++.|++..   ..+.+++|-|+.+..|+++||||+|||||+|++.|.+.   |..|.+ ...+..-|   .
T Consensus       387 ~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~---~  457 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLP---R  457 (614)
T ss_pred             CCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccch---h
Confidence            47899999999998743   36799999999999999999999999999999999994   555542 12221111   0


Q ss_pred             EeecCCCCccccccCccc-ChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225          154 VLPMDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~i  229 (270)
                       +.   ++... .++... -.++....+  +.....+.+..++..+++..   .+....+|.|++.|+..+..+...|.+
T Consensus       458 -y~---Qh~~e-~ldl~~s~le~~~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l  530 (614)
T KOG0927|consen  458 -YN---QHLAE-QLDLDKSSLEFMMPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL  530 (614)
T ss_pred             -hh---hhhHh-hcCcchhHHHHHHHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE
Confidence             00   00000 011100 111222221  22234556677788887764   456679999999999999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHhhccc----eEEeccc
Q 024225          230 VIVDGNYLFLDGGVWKDVSSMFDEK----CYATSFK  261 (270)
Q Consensus       230 lIld~~~~~lDe~~~~~l~~~~~~~----i~v~~~~  261 (270)
                      |++|||+..+|-+....+.+.+++.    |+|+||.
T Consensus       531 LlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDf  566 (614)
T KOG0927|consen  531 LLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDF  566 (614)
T ss_pred             EEecCCCcCCCchhHHHHHHHHhccCCceeeeechh
Confidence            9999999999999999999999965    5677765

>PLN03232 ABC transporter C family member; Provisional

Probab=99.73  E-value=6.7e-18  Score=179.58  Aligned_cols=167  Identities=14%  Similarity=0.103  Sum_probs=115.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++|+++.|+...+ ..+|+|+||++++|+.++|+||+|||||||+++|.|.+.   |++|.+..-   +.. ..++.
T Consensus       614 ~I~~~~vsF~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~~---~~~-Iayv~  685 (1495)
T PLN03232        614 AISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVVI---RGS-VAYVP  685 (1495)
T ss_pred             cEEEEeeEEEcCCCCC-CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEEe---cCc-EEEEc
Confidence            5899999999975211 225799999999999999999999999999999999995   666643210   112 23355


Q ss_pred             cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCChhhhhhhh
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPVEDDILV  223 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~rv~~~~~l  223 (270)
                      ++..-..   -+..       .++-+...++.+.+.++++...+         |.+..    .-.+||||+||+++++++
T Consensus       686 Q~p~Lf~---gTIr-------eNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl  755 (1495)
T PLN03232        686 QVSWIFN---ATVR-------ENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV  755 (1495)
T ss_pred             Ccccccc---ccHH-------HHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence            5554322   1222       22222223455566655554332         22222    236999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHH-hhc------cceEEeccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSS-MFD------EKCYATSFK  261 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~-~~~------~~i~v~~~~  261 (270)
                      ..+++++|+|||+..+|....+++.+ .++      ..|.|+|..
T Consensus       756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~  800 (1495)
T PLN03232        756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL  800 (1495)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECCh
Confidence            99999999999999999876665533 222      457888765

>PLN03130 ABC transporter C family member; Provisional

Probab=99.72  E-value=2.3e-17  Score=176.11  Aligned_cols=166  Identities=17%  Similarity=0.144  Sum_probs=115.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccCCCCCCCCCceEEe
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL  155 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~-G~~~~~~~~~p~~g~~i  155 (270)
                      .++++|+++.|+.... ..+|+|+||++++|++++|+||+|||||||+++|.|.+.   +++ |++.-    ... ..++
T Consensus       614 ~I~~~nvsf~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~-Iayv  684 (1622)
T PLN03130        614 AISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGT-VAYV  684 (1622)
T ss_pred             ceEEEeeEEEccCCCC-CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCe-EEEE
Confidence            5899999999975211 226799999999999999999999999999999999994   666 55321    111 2235


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCChhhhhhh
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPVEDDIL  222 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~rv~~~~~  222 (270)
                      .++.+-..   -+.       +.++-+...++.+.+.++++...+         |.+..    ...+||||+||++++++
T Consensus       685 ~Q~p~Lfn---gTI-------reNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA  754 (1622)
T PLN03130        685 PQVSWIFN---ATV-------RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA  754 (1622)
T ss_pred             cCccccCC---CCH-------HHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence            55554322   122       223323223455666665554332         32222    33699999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHH-Hhhc------cceEEeccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD------EKCYATSFK  261 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~-~~~~------~~i~v~~~~  261 (270)
                      +..+++++|+|+++..+|....+++. ..+.      ..|.|+|..
T Consensus       755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l  800 (1622)
T PLN03130        755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL  800 (1622)
T ss_pred             HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCH
Confidence            99999999999999999987666553 2222      447888775

>PLN03140 ABC transporter G family member; Provisional

Probab=99.71  E-value=1.6e-17  Score=175.50  Aligned_cols=182  Identities=12%  Similarity=0.057  Sum_probs=121.5

Q ss_pred             eEEeccchhhhhhhh---------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC
Q 024225           77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV  146 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~---------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~  146 (270)
                      .+..+||++..+...         ....+|+|+|+++++|++++|+||||||||||+++|+|+... -+.+|++ +++..
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence            477888887764211         123478999999999999999999999999999999998630 1246774 34322


Q ss_pred             CCC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc----HHHHHHHHHhhccCC--CcC-----CCCCCc
Q 024225          147 KPP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN----PLLLLNCLKNLRNQG--SVY-----APSFDH  211 (270)
Q Consensus       147 ~~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~----~~~~~~~l~~l~~~~--~~~-----~~~~S~  211 (270)
                      ...    ....++.+++.+..  .+++.++..+... ...+....    ...+.++++.+++..  +..     +..+|+
T Consensus       946 ~~~~~~~~~igyv~Q~d~~~~--~lTV~E~L~~~a~-lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140        946 KKQETFARISGYCEQNDIHSP--QVTVRESLIYSAF-LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred             CChHHhhhheEEEccccccCC--CCcHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence            111    11233666655433  3666666554322 12222111    223566777776642  222     247999


Q ss_pred             ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE  262 (270)
Q Consensus       212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~  262 (270)
                      ||+||+.++.++..+|++|++|||+.+||......+.+.++.       .|.++|+.+
T Consensus      1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140       1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            999999999999999999999999999999777777666652       255555544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.71  E-value=1.2e-17  Score=177.62  Aligned_cols=148  Identities=13%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccChH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~  174 (270)
                      +|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++     . ..++.++.... .  .+..++..
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~-iayv~Q~~~l~-~--~Ti~eNI~  508 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----R-ISFSPQTSWIM-P--GTIKDNII  508 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----E-EEEEeCCCccC-C--ccHHHHHH
Confidence            6799999999999999999999999999999999994   666653 222     1 12244443221 1  13322221


Q ss_pred             HHHHhcCCCCCccHHHHHH---------HHHhhccCCC----cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225          175 EAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~---------~l~~l~~~~~----~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe  241 (270)
                           +|..  ++.....+         .++.+..+..    .....+|+||+||+++++++..+++++|+|+|+..+|.
T Consensus       509 -----~g~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~  581 (1490)
T TIGR01271       509 -----FGLS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV  581 (1490)
T ss_pred             -----hccc--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence                 2221  22222222         2222222322    13458999999999999999999999999999999999


Q ss_pred             hhHHHHHHh-hc------cceEEecccc
Q 024225          242 GVWKDVSSM-FD------EKCYATSFKE  262 (270)
Q Consensus       242 ~~~~~l~~~-~~------~~i~v~~~~~  262 (270)
                      ...+++.+. +.      ..|.++|+.+
T Consensus       582 ~~~~~i~~~~l~~~~~~~tvilvtH~~~  609 (1490)
T TIGR01271       582 VTEKEIFESCLCKLMSNKTRILVTSKLE  609 (1490)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence            888888763 22      3477777753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.69  E-value=8.7e-17  Score=169.88  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---Cccc-CCCCCC----CCCceEEeecCCCCcccc
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVK----PPDVATVLPMDGFHLYLS  165 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~---~G~~-~~~~~~----~p~~g~~i~~dg~~~~~~  165 (270)
                      ..+|+|+|+.+++|++++|+||||||||||+|+|+|++.   ++   +|++ +++...    ......++.+++.+... 
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~-  253 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV-  253 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCCc-
Confidence            447899999999999999999999999999999999985   66   7874 444311    11223346666554433 


Q ss_pred             ccCcccChHHHHHhcCCCCC-------------------ccH---------------HHHHHHHHhhccCC-------Cc
Q 024225          166 QLDAMEDPKEAHARRGAPWT-------------------FNP---------------LLLLNCLKNLRNQG-------SV  204 (270)
Q Consensus       166 ~l~~~~~~~~~~~~~g~~~~-------------------~~~---------------~~~~~~l~~l~~~~-------~~  204 (270)
                       +++.++..+.....+....                   .+.               .....+++.+++..       +.
T Consensus       254 -lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~  332 (1470)
T PLN03140        254 -MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE  332 (1470)
T ss_pred             -CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence             6777766654433321100                   000               01234566666642       33


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .+..+|+||+||+.++.++..+++++++|||+.+||.....++.+.++
T Consensus       333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr  380 (1470)
T PLN03140        333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ  380 (1470)
T ss_pred             cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999976666666554

>TIGR00235 udk uridine kinase

Probab=99.69  E-value=7.5e-17  Score=137.78  Aligned_cols=141  Identities=21%  Similarity=0.321  Sum_probs=103.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      -++|+++||+||||||||||++.|+++++                +....++.+|+++.........   ......++.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~---~~~~~~~~~~   63 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG----------------KLEIVIISQDNYYKDQSHLEMA---ERKKTNFDHP   63 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhc----------------ccCCeEecccccccChhhCCHH---HhcCCCCCCc
Confidence            46899999999999999999999999983                2234458999986443221111   1111122234


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET  263 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~  263 (270)
                      ..++...+.+.++.+..+..+..|.|++....+..... .....+++|+||.++++++    .+.+.++..|||+++.++
T Consensus        64 ~~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~~~-~~~~~~~vIieG~~~~~~~----~~~~~~d~~I~v~~~~~~  138 (207)
T TIGR00235        64 DAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETV-HIEPKDVVILEGIMPLFDE----RLRDLMDLKIFVDTPLDI  138 (207)
T ss_pred             cHhHHHHHHHHHHHHHCCCCEecccceeecCCCCCceE-EeCCCCEEEEEehhhhchH----hHHHhCCEEEEEECChhH
Confidence            55666677888888888888999999887666543222 2346789999999998873    678899999999999999


Q ss_pred             hhhcc
Q 024225          264 YFNRE  268 (270)
Q Consensus       264 ~~~r~  268 (270)
                      ++.|+
T Consensus       139 ~l~R~  143 (207)
T TIGR00235       139 RLIRR  143 (207)
T ss_pred             HHHHH
Confidence            98875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=5.9e-17  Score=147.73  Aligned_cols=149  Identities=16%  Similarity=0.147  Sum_probs=111.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .+.++++++.|+...   ..|.++||+++.|+.++++||+|+||||++++|.+++                .+++|. |.
T Consensus       262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy----------------D~~sG~-I~  321 (497)
T COG5265         262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY----------------DVNSGS-IT  321 (497)
T ss_pred             eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh----------------CCcCce-EE
Confidence            477899999998733   2569999999999999999999999999999999999                778887 88


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC----------------------------CCc---
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----------------------------GSV---  204 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~----------------------------~~~---  204 (270)
                      +||+++...      .....++.+|+ |++.- -.-.++..|++.+                            -+.   
T Consensus       322 id~qdir~v------tq~slR~aIg~VPQDtv-LFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg  394 (497)
T COG5265         322 IDGQDIRDV------TQQSLRRAIGIVPQDTV-LFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG  394 (497)
T ss_pred             EcchhHHHh------HHHHHHHHhCcCcccce-ehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence            899877541      12234555665 33211 1111222233321                            111   


Q ss_pred             -CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          205 -YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       205 -~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                       ..-.+|||++||+++++.+..+|+++++||.+..||-..-+++...++
T Consensus       395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~  443 (497)
T COG5265         395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR  443 (497)
T ss_pred             hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence             122679999999999999999999999999999999877777777776

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=1.1e-16  Score=156.72  Aligned_cols=171  Identities=13%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             EEeccchhhhhhhh-cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-----CCC
Q 024225           78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----PPD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~-~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-----~p~  150 (270)
                      +..++++....... ....+|++||.++++||+.||+||||||||||+++|+|........+|++ .++...     +..
T Consensus        26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~  105 (613)
T KOG0061|consen   26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI  105 (613)
T ss_pred             eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence            44445544443321 11336799999999999999999999999999999999985333456774 444221     223


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCC----ccHHHHHHHHHhhccC--CCcCC-----CCCCcccCChhhh
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVED  219 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~~~~~~l~~l~~~--~~~~~-----~~~S~g~~~rv~~  219 (270)
                      .|. +.+|+..+..  +++.|...+.. ....+.+    .....+.++++.+++.  .+..+     ...|||+++|+.+
T Consensus       106 s~y-V~QdD~l~~~--LTV~EtL~f~A-~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi  181 (613)
T KOG0061|consen  106 SGY-VQQDDVLLPT--LTVRETLRFSA-LLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI  181 (613)
T ss_pred             eEE-Eccccccccc--ccHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence            444 8888876554  77766554433 3344442    3334566777777765  23333     4689999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      +..+..+|.++++|||+.+||.....++.++++
T Consensus       182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk  214 (613)
T KOG0061|consen  182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLK  214 (613)
T ss_pred             HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence            999999999999999999999977767666666

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.67  E-value=1.5e-16  Score=138.02  Aligned_cols=145  Identities=42%  Similarity=0.666  Sum_probs=111.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCce--EE-eecCCCCccccccCcccChHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA--TV-LPMDGFHLYLSQLDAMEDPKEAHARR  180 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g--~~-i~~dg~~~~~~~l~~~~~~~~~~~~~  180 (270)
                      -.+..++||+||||||||||++.|+++++                +..|  .+ +.+|+++.....+...    ......
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~----------------~~~g~~~v~i~~D~~~~~~~~~~~~----g~~~~~   89 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ----------------QDGELPAIQVPMDGFHLDNAVLDAH----GLRPRK   89 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh----------------hccCCceEEEecccccCCHHHHHhc----cccccc
Confidence            45689999999999999999999999994                3323  24 7888886543211110    011124


Q ss_pred             CCCCCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225          181 GAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS  259 (270)
Q Consensus       181 g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~  259 (270)
                      +.+..++...+.+++..+..+. ....|.|+....+.......+....+++|+||.+++.+++.|..+.+.+|..|||++
T Consensus        90 ~~~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~  169 (229)
T PRK09270         90 GAPETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDA  169 (229)
T ss_pred             CCCCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEEC
Confidence            5577788888889999998886 788899999887766554444446789999999999998899999999999999999


Q ss_pred             cccchhhcc
Q 024225          260 FKETYFNRE  268 (270)
Q Consensus       260 ~~~~~~~r~  268 (270)
                      +.++++.|.
T Consensus       170 ~~~~~~~R~  178 (229)
T PRK09270        170 PAEVLRERL  178 (229)
T ss_pred             CHHHHHHHH
Confidence            999887763

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.67  E-value=1.3e-16  Score=168.53  Aligned_cols=157  Identities=12%  Similarity=0.003  Sum_probs=105.9

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCccc-CCCCCC------CCCceEEeecCCCCcccc
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS-FDSQVK------PPDVATVLPMDGFHLYLS  165 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~-~~~~~G~~-~~~~~~------~p~~g~~i~~dg~~~~~~  165 (270)
                      ..+|+|+|+++++||+++|+||||||||||+|+|+|++.. ..+++|++ +++...      ......++.+++.+... 
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~-  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH-  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC-
Confidence            3477999999999999999999999999999999998621 12577884 444211      01112335666544333 


Q ss_pred             ccCcccChHHHHHhcCC---CCCccH----HH-HHHHHHhhccCC--C-----cCCCCCCcccCChhhhhhhhccCCcEE
Q 024225          166 QLDAMEDPKEAHARRGA---PWTFNP----LL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVV  230 (270)
Q Consensus       166 ~l~~~~~~~~~~~~~g~---~~~~~~----~~-~~~~l~~l~~~~--~-----~~~~~~S~g~~~rv~~~~~l~~~~~il  230 (270)
                       +++.++..+..+...-   ......    .. ...+++.+++..  +     ..+..+||||+||+.++.++..+++++
T Consensus       153 -lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl  231 (1394)
T TIGR00956       153 -LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ  231 (1394)
T ss_pred             -CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence             6776666554332210   001111    11 234566666643  1     234679999999999999999999999


Q ss_pred             EEeCCCCCCChhhHHHHHHhhc
Q 024225          231 IVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       231 Ild~~~~~lDe~~~~~l~~~~~  252 (270)
                      ++|||+.+||.....++.+.++
T Consensus       232 llDEPTsgLD~~~~~~i~~~L~  253 (1394)
T TIGR00956       232 CWDNATRGLDSATALEFIRALK  253 (1394)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHH
Confidence            9999999999976666555554

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.67  E-value=2.8e-16  Score=142.40  Aligned_cols=145  Identities=19%  Similarity=0.204  Sum_probs=107.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ..++++|+.+.|....   .-+-.||++|++||+|-|+|.||||||||+++|.|++                .|++|. |
T Consensus       321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~----------------~PqsG~-I  380 (546)
T COG4615         321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY----------------QPQSGE-I  380 (546)
T ss_pred             cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc----------------CCCCCc-e
Confidence            3589999999998742   2357899999999999999999999999999999999                778888 8


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCC-------------CCC-ccHHHHHHHHHhhccC-------CCcCCCCCCcccC
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-------------PWT-FNPLLLLNCLKNLRNQ-------GSVYAPSFDHGVG  214 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-------------~~~-~~~~~~~~~l~~l~~~-------~~~~~~~~S~g~~  214 (270)
                      ..||..+...      ..+..+..+..             +++ .....+...++.+.+.       .+...-.+|-||+
T Consensus       381 ~ldg~pV~~e------~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQk  454 (546)
T COG4615         381 LLDGKPVSAE------QLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQK  454 (546)
T ss_pred             eECCccCCCC------CHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchH
Confidence            8888765432      22223222111             111 2233344555555543       3344457899999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHH
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD  246 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~  246 (270)
                      +|++...++..+-+|+++||.-.--||.+++.
T Consensus       455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~  486 (546)
T COG4615         455 KRLALLLALLEERDILVLDEWAADQDPAFRRE  486 (546)
T ss_pred             HHHHHHHHHHhhCCeEEeehhhccCChHHHHH
Confidence            99999999999999999999999999965543

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.67  E-value=9.6e-18  Score=141.90  Aligned_cols=144  Identities=30%  Similarity=0.468  Sum_probs=102.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN  187 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~  187 (270)
                      +|||.||+|||||||++.|...+++    .|.       .+ .....+.+|+++........ .........++.+.+++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~----~~~-------~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d   68 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK----RGI-------PAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFD   68 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT----CTT-------TCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc----cCc-------CccceeEEEeecccccccchhhH-hhccccccCCCCccccC
Confidence            6999999999999999999999941    110       11 01334778887532210000 00000011234477889


Q ss_pred             HHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhc
Q 024225          188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR  267 (270)
Q Consensus       188 ~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r  267 (270)
                      .+.+.+.+..|..++.+..|.|++....+.... .+..++++||+||.++++|+    .+++++|++|||+++.++++.|
T Consensus        69 ~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~~~-~~~~~~~ivIvEG~~~l~~~----~l~~l~D~~ifld~~~~~~l~R  143 (194)
T PF00485_consen   69 FDLLKEDLKALKNGGSIEIPIYDFSTGDRDPWI-IIISPSDIVIVEGIYALYDE----ELRDLFDLKIFLDADEDLRLER  143 (194)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEEEETTTTEEEEEE-EEEES-SEEEEEETTTTSSH----CHGGG-SEEEEEEE-HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccccccceeee-eecCCCCEEEEcccceeeee----eecccceeEEEecccHHHHHHH
Confidence            999999999999999999999999888777622 23457899999999999995    5999999999999999999988


Q ss_pred             cC
Q 024225          268 EA  269 (270)
Q Consensus       268 ~~  269 (270)
                      ++
T Consensus       144 ri  145 (194)
T PF00485_consen  144 RI  145 (194)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.67  E-value=6.7e-17  Score=137.19  Aligned_cols=141  Identities=14%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc---------c-CCCCCC--CC--CceEEeecCCCCcc
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---------S-FDSQVK--PP--DVATVLPMDGFHLY  163 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~---------~-~~~~~~--~p--~~g~~i~~dg~~~~  163 (270)
                      +++++++++| +++|+||||||||||+++|++++.   +..|.         + +.+...  .+  ....++.++.... 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-
Confidence            6789999999 999999999999999999999984   33221         1 111110  00  0111122222110 


Q ss_pred             ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCC
Q 024225          164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFL  239 (270)
Q Consensus       164 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~l  239 (270)
                                      ++..   ......++++. ....+..+..+|+|++||++++.++.    .+++++++|||+..+
T Consensus        89 ----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L  148 (197)
T cd03278          89 ----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL  148 (197)
T ss_pred             ----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence                            1100   11234445554 22235566799999999999998875    356899999999999


Q ss_pred             ChhhHHHHHHhhcc------ceEEeccccc
Q 024225          240 DGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       240 De~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+...+.+.+++..      .|+++|+.+.
T Consensus       149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~  178 (197)
T cd03278         149 DDANVERFARLLKEFSKETQFIVITHRKGT  178 (197)
T ss_pred             CHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence            99877777776663      3677777653

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.65  E-value=5.9e-16  Score=131.15  Aligned_cols=136  Identities=24%  Similarity=0.427  Sum_probs=99.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  188 (270)
                      +|||+||||||||||++.|.+++.               .+ ...++.+|+++...   ...+........++.+..++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~-~~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~   61 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NP-KVVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF   61 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---------------CC-CeEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence            589999999999999999999972               22 34568999886432   221111111223445666777


Q ss_pred             HHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ..+.+.+..+..+.....|.|++....+..... ....++++|+|+++++.++    .+.+.++..|||+++.++++.|+
T Consensus        62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~R~  136 (198)
T cd02023          62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLIRR  136 (198)
T ss_pred             HHHHHHHHHHHCCCCEeccccccccCcccCCce-ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHHHH
Confidence            777888888988887778877766655543333 3456899999999999984    66778899999999999988875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.65  E-value=8e-16  Score=131.46  Aligned_cols=140  Identities=23%  Similarity=0.363  Sum_probs=104.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~  184 (270)
                      .++.+|||.|+||||||||++.|.+.+.                .....++.+|+++.....++..   ......++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~---~~~~~~~~~~~   64 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG----------------DESIAVIPQDSYYKDQSHLSFE---ERVKTNYDHPD   64 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC----------------CCceEEEeCCccccCcccCCHH---HhcccCccCcc
Confidence            4789999999999999999999999982                2334558999986544222111   11122344566


Q ss_pred             CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY  264 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~  264 (270)
                      .++...+.+.++.+..+..+..|.|+.....+...... ....+++|+|+++++.++    .+.+.+|..|||+++.+++
T Consensus        65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~~~-~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~~~  139 (209)
T PRK05480         65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIR-VEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLDIR  139 (209)
T ss_pred             cccHHHHHHHHHHHHcCCccccCcccccccccCCCeEE-eCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChhHH
Confidence            77888888999999888888889888776665443222 245679999999998763    7778899999999999999


Q ss_pred             hhcc
Q 024225          265 FNRE  268 (270)
Q Consensus       265 ~~r~  268 (270)
                      +.|+
T Consensus       140 ~~R~  143 (209)
T PRK05480        140 LIRR  143 (209)
T ss_pred             HHHH
Confidence            8875

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.65  E-value=3.3e-16  Score=149.71  Aligned_cols=133  Identities=23%  Similarity=0.346  Sum_probs=103.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~  184 (270)
                      ...-+|||+||||||||||++.|++++                 |..+. |.+|||+....         .....+..+.
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL-----------------p~vgv-IsmDdy~~~~~---------~i~~nfD~P~  115 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM-----------------PSIAV-ISMDNYNDSSR---------IIDGNFDDPR  115 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC-----------------CCcEE-EEEcceecchh---------hhCccCCChh
Confidence            345799999999999999999999986                 23454 99999853210         0111223355


Q ss_pred             CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY  264 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~  264 (270)
                      .++...+.+.++.|..+..+..|.|++....+...........+++|+||.+++.+     ++++++|.+|||+++.+.+
T Consensus       116 a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkIFVDtdvDir  190 (656)
T PLN02318        116 LTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFD  190 (656)
T ss_pred             hcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEEEEcCCccHH
Confidence            56667777888999999999999999998877654333456789999999999874     8999999999999999988


Q ss_pred             hhccC
Q 024225          265 FNREA  269 (270)
Q Consensus       265 ~~r~~  269 (270)
                      +.||+
T Consensus       191 L~RRI  195 (656)
T PLN02318        191 LVKRV  195 (656)
T ss_pred             HHHHH
Confidence            88763

>PTZ00243 ABC transporter; Provisional

Probab=99.64  E-value=3.8e-16  Score=166.44  Aligned_cols=149  Identities=17%  Similarity=0.110  Sum_probs=99.2

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~  175 (270)
                      +|+|+||++++|++++|+||||||||||+++|+|++.   |++|++.-.    ...+ ++.++... ..  .+..++...
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~----~~i~-yv~Q~~~l-~~--~Tv~enI~~  743 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE----RSIA-YVPQQAWI-MN--ATVRGNILF  743 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC----CeEE-EEeCCCcc-CC--CcHHHHHHc
Confidence            6799999999999999999999999999999999985   667764321    1122 35555432 11  233222211


Q ss_pred             HHHhcCCCCCccHHHHH---------HHHHhhccCC----CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225          176 AHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (270)
Q Consensus       176 ~~~~~g~~~~~~~~~~~---------~~l~~l~~~~----~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~  242 (270)
                           +  ...+...+.         +.++.+..+.    ......+|+||+||+++++++..+++++|+|||+..+|..
T Consensus       744 -----~--~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~  816 (1560)
T PTZ00243        744 -----F--DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH  816 (1560)
T ss_pred             -----C--ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence                 1  111221222         2233332221    2345689999999999999999999999999999999987


Q ss_pred             hHHHHHHh-h----c--cceEEecccc
Q 024225          243 VWKDVSSM-F----D--EKCYATSFKE  262 (270)
Q Consensus       243 ~~~~l~~~-~----~--~~i~v~~~~~  262 (270)
                      ..+.+.+. +    .  ..|.++|+.+
T Consensus       817 ~~~~i~~~~~~~~~~~~TvIlvTH~~~  843 (1560)
T PTZ00243        817 VGERVVEECFLGALAGKTRVLATHQVH  843 (1560)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence            66655432 1    1  3477887764

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.63  E-value=8.7e-16  Score=128.47  Aligned_cols=136  Identities=22%  Similarity=0.290  Sum_probs=101.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  188 (270)
                      +|+|.|++|||||||++.|...+..              ......++.+|+|+.+.  ...    ......+..+..++.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~--------------~~~~~~~i~~Ddf~~~~--~~~----~~~~g~~d~~~~~d~   60 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRV--------------NGIGPVVISLDDYYVPR--KTP----RDEDGNYDFESILDL   60 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH--------------cCCCEEEEehhhcccCc--ccc----cccCCCCCCCccccH
Confidence            5899999999999999999999831              12234569999998654  010    000111222333577


Q ss_pred             HHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc-hhhc
Q 024225          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET-YFNR  267 (270)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~-~~~r  267 (270)
                      +.+.+.+..+..+..+..|.|++....+.........+.++||+||.+++.+     .++++++.+|||+++.+. ++.|
T Consensus        61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r  135 (179)
T cd02028          61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR  135 (179)
T ss_pred             HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence            7888888889988889999999988877654233445788999999999875     788999999999999998 8877


Q ss_pred             cC
Q 024225          268 EA  269 (270)
Q Consensus       268 ~~  269 (270)
                      |+
T Consensus       136 ri  137 (179)
T cd02028         136 RV  137 (179)
T ss_pred             HH
Confidence            64

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.62  E-value=1.2e-15  Score=128.16  Aligned_cols=136  Identities=24%  Similarity=0.296  Sum_probs=102.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  188 (270)
                      +|||.|++|||||||++.|+..+.                .  ..++.+|+++....++.....   ...+++.+..+|.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~----------------~--~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~   59 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP----------------N--CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM   59 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC----------------C--CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence            589999999999999999999872                1  345999999877544332111   2235666888999


Q ss_pred             HHHHHHHHhhccCCCcCCCCCCcccCChhh-------------hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccce
Q 024225          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKC  255 (270)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~-------------~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i  255 (270)
                      ..+.+.+..+..+.....+.++.+......             .......+.+++|+||.+++.++    .+.+++|.+|
T Consensus        60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I  135 (187)
T cd02024          60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY  135 (187)
T ss_pred             HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence            999999999998876555555555433211             11224456789999999999985    7889999999


Q ss_pred             EEeccccchhhccC
Q 024225          256 YATSFKETYFNREA  269 (270)
Q Consensus       256 ~v~~~~~~~~~r~~  269 (270)
                      ||+++.++++.|+.
T Consensus       136 fvd~~~d~~~~Rr~  149 (187)
T cd02024         136 FLRVPYETCKRRRE  149 (187)
T ss_pred             EecCCHHHHHHHHH
Confidence            99999999999874

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.62  E-value=2e-15  Score=144.88  Aligned_cols=164  Identities=17%  Similarity=0.141  Sum_probs=120.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CcccCCCCCCCC-Cc-e
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPP-DV-A  152 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-~G~~~~~~~~~p-~~-g  152 (270)
                      ..+.++||+..-++..   ..+++.+|++++|+-+-|.||||||||||+|.|+|+    ||. +|.+     ..| +. -
T Consensus       391 ~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL----WP~g~G~I-----~~P~~~~~  458 (604)
T COG4178         391 HGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-----SMPADSAL  458 (604)
T ss_pred             ceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc----CccCCCce-----ecCCCCce
Confidence            5689999999998744   256999999999999999999999999999999998    565 3321     112 11 1


Q ss_pred             EEeecCCCCccccccCcccChHHHHHhcCCCCC---ccHHHHHHHHHhhccC--------CCcCCCCCCcccCChhhhhh
Q 024225          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT---FNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~~~~l~~l~~~--------~~~~~~~~S~g~~~rv~~~~  221 (270)
                      -++++.+|      ++.-    -.++..-+|..   +..+.+.+++..++++        .+.+-..+|+|++||++.++
T Consensus       459 lflpQ~PY------~p~G----tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR  528 (604)
T COG4178         459 LFLPQRPY------LPQG----TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR  528 (604)
T ss_pred             EEecCCCC------CCCc----cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence            22333333      2222    13334444432   4566777888877765        34456689999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEeccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFK  261 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~  261 (270)
                      .+..+|+++++||.+..+||+....+-++++.    ..+|++-+
T Consensus       529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H  572 (604)
T COG4178         529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH  572 (604)
T ss_pred             HHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence            99999999999999999999988888888875    34555544

>PLN02348 phosphoribulokinase

Probab=99.61  E-value=1.3e-15  Score=140.01  Aligned_cols=149  Identities=23%  Similarity=0.322  Sum_probs=106.4

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcC--
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--  181 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~-~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g--  181 (270)
                      +..-+|||.|+||||||||++.|...+.... +..|.-.+.+...++...++.+|+|+..+..         .++..+  
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~~g~t  117 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKEKGVT  117 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChh---------hHhhcCCc
Confidence            4568999999999999999999999984110 0000000111112345677999999864321         111112  


Q ss_pred             --CCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225          182 --APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS  259 (270)
Q Consensus       182 --~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~  259 (270)
                        .+...+.+.+.+.++.|+.+..+..|.|++..+......  ...++++||+||.+.+.|+    .+++++|.+|||++
T Consensus       118 ~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~  191 (395)
T PLN02348        118 ALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDI  191 (395)
T ss_pred             cCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCc----cccccCcEEEEEEC
Confidence              144566777889999999999999999999877654422  3456899999999999995    78899999999999


Q ss_pred             cccchhhcc
Q 024225          260 FKETYFNRE  268 (270)
Q Consensus       260 ~~~~~~~r~  268 (270)
                      +.++++.|+
T Consensus       192 ~~dvrl~RR  200 (395)
T PLN02348        192 SDDVKFAWK  200 (395)
T ss_pred             CHHHHHHHH
Confidence            999986554

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=1.4e-15  Score=132.78  Aligned_cols=49  Identities=14%  Similarity=0.079  Sum_probs=40.7

Q ss_pred             cCCCCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ..+..+|+||+||++++.++.    .+++++|+|||+..+|+...+.+.+.+.
T Consensus       154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~  206 (243)
T cd03272         154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIK  206 (243)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence            456689999999999999885    3589999999999999976666665554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=4.5e-15  Score=153.36  Aligned_cols=160  Identities=17%  Similarity=0.185  Sum_probs=113.1

Q ss_pred             hhccccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCC
Q 024225           67 VLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV  146 (270)
Q Consensus        67 ~~~~~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~  146 (270)
                      .+.+||.. -.++++|++..|....  -.+|+||||+|++||.|||+|..|||||||+..|.++.               
T Consensus      1129 pp~~WP~~-G~I~f~~~~~RYrp~l--p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~--------------- 1190 (1381)
T KOG0054|consen 1129 PPPSWPSK-GEIEFEDLSLRYRPNL--PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV--------------- 1190 (1381)
T ss_pred             CCCCCCCC-CeEEEEEeEEEeCCCC--cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc---------------
Confidence            45566643 4589999999997642  44779999999999999999999999999999999998               


Q ss_pred             CCCCceEEeecCCCCccccccCcccChHHHHHhcCC-CC-----------------CccHHHHHHHHHhhcc--------
Q 024225          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PW-----------------TFNPLLLLNCLKNLRN--------  200 (270)
Q Consensus       147 ~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~-----------------~~~~~~~~~~l~~l~~--------  200 (270)
                       .|..|. |.+||.++..-.      ...++.++++ |+                 ++..+.+-+.++...+        
T Consensus      1191 -e~~~G~-I~IDgvdI~~ig------L~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1191 -EPAEGE-ILIDGVDISKIG------LHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred             -CccCCe-EEEcCeeccccc------HHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCC
Confidence             555666 777776654311      1123333333 22                 2233333344443332        


Q ss_pred             -CCCcC----CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh----hHHHHHHhhc
Q 024225          201 -QGSVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD  252 (270)
Q Consensus       201 -~~~~~----~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~----~~~~l~~~~~  252 (270)
                       +.+..    ...||-||+|-+.+++++..+.+|||+||.++..|..    .++.+++.|.
T Consensus      1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~ 1323 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK 1323 (1381)
T ss_pred             cCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc
Confidence             22221    2378999999999999999999999999999999985    4555555555

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.58  E-value=2.5e-15  Score=126.35  Aligned_cols=171  Identities=16%  Similarity=0.266  Sum_probs=119.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc--CCC-C--CCCC
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDS-Q--VKPP  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--~~~-~--~~~p  149 (270)
                      |+++.++||+..+.....++.+++++|+++++||+-||+|+||||||-.+|.|+|..+++|--.+..  +++ +  ...|
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence            5678899999999887778899999999999999999999999999999999999998888655441  221 0  0111


Q ss_pred             --------CceEEeecCCCCccccccCcccChHHHHH-hc-CC-CCCc----------cHHHHHHHHHhhccCC-----C
Q 024225          150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RR-GA-PWTF----------NPLLLLNCLKNLRNQG-----S  203 (270)
Q Consensus       150 --------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~-g~-~~~~----------~~~~~~~~l~~l~~~~-----~  203 (270)
                              ....+|+++...       ..+..+...+ .+ .+ .++|          ...+..+++..++...     .
T Consensus        81 r~RRk~ig~~isMIFQeP~s-------CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~  153 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQS-------CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR  153 (330)
T ss_pred             HHhhhhhccchhhhhcCchh-------hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence                    112223333322       2211111111 11 11 1111          2233455666666543     2


Q ss_pred             cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      -|+.++..|+.|++.++.+++.++++||.|||+..+|+..+.++..++.
T Consensus       154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs  202 (330)
T COG4170         154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLS  202 (330)
T ss_pred             hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHH
Confidence            3667889999999999999999999999999999999987777766665

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.56  E-value=9.7e-15  Score=150.95  Aligned_cols=166  Identities=13%  Similarity=0.130  Sum_probs=116.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ..++++|.++..+.. .....|+||||+|++|+.+||+|+-|||||+|+..|.|.+.                ..+|. +
T Consensus       517 ~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~----------------~~sG~-v  578 (1381)
T KOG0054|consen  517 NAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP----------------KLSGS-V  578 (1381)
T ss_pred             ceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc----------------cccce-E
Confidence            458889999998762 23337899999999999999999999999999999999994                33444 4


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---------CcC----CCCCCcccCChhhhhhh
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------SVY----APSFDHGVGDPVEDDIL  222 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---------~~~----~~~~S~g~~~rv~~~~~  222 (270)
                      ..+|-..+-++-+=..+. -.+.++=+...+|.+++.++++.-.+.+         ...    .-.+|||||||+.+|++
T Consensus       579 ~v~gsiaYv~Q~pWI~ng-TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA  657 (1381)
T KOG0054|consen  579 AVNGSVAYVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA  657 (1381)
T ss_pred             EEcCeEEEeccccHhhCC-cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence            444432221111111111 1333443455678888888877555432         222    23889999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHH-----Hhhc--cceEEecc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKCYATSF  260 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~-----~~~~--~~i~v~~~  260 (270)
                      +-.++++.++|-|+..+|.+.-+++-     .+++  ..|+|||.
T Consensus       658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHq  702 (1381)
T KOG0054|consen  658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQ  702 (1381)
T ss_pred             HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCc
Confidence            99999999999999999986554443     3333  55888884

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.55  E-value=1.8e-14  Score=128.07  Aligned_cols=129  Identities=26%  Similarity=0.380  Sum_probs=95.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC----CC
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW  184 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~----~~  184 (270)
                      ++||+|+||||||||++.|++++                .+..+.++.+|+++...    .    . .++..|+    +.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll----------------~~~~~~vi~~Dd~~~~~----~----~-~r~~~g~~~~~p~   55 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLF----------------GSDLVTVICLDDYHSLD----R----K-GRKETGITALDPR   55 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhh----------------CCCceEEEECcccccCC----H----H-HHHHhhccccccc
Confidence            58999999999999999999998                45556678888875321    1    1 1223333    22


Q ss_pred             CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY  264 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~  264 (270)
                      ..+...+.+.++.++.++.+..|.|++........  ....+.+++|+||++++.+    ..+.+++|.+|||+++.+++
T Consensus        56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~~--~~i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r  129 (273)
T cd02026          56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDPP--ELIKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVK  129 (273)
T ss_pred             chhHHHHHHHHHHHHCCCCcccccccccCCCcCCc--EEcCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHH
Confidence            33445566778888888888889998877653321  1224578999999999888    48889999999999999999


Q ss_pred             hhcc
Q 024225          265 FNRE  268 (270)
Q Consensus       265 ~~r~  268 (270)
                      +.|+
T Consensus       130 ~~r~  133 (273)
T cd02026         130 FAWK  133 (273)
T ss_pred             HHHH
Confidence            6653

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=1.3e-14  Score=133.16  Aligned_cols=175  Identities=17%  Similarity=0.143  Sum_probs=122.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      .|++-+.+|++.|.+..  . .+..++|-|.---.|+|+||||.|||||+++|.|-+.   |+.|+...++.     -. 
T Consensus       584 PPvLGlH~VtFgy~gqk--p-LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhr-----L~-  651 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQK--P-LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHR-----LR-  651 (807)
T ss_pred             CCeeecccccccCCCCC--c-hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccce-----ee-
Confidence            46899999999997633  2 5699999999999999999999999999999999884   77776433321     11 


Q ss_pred             eecCCCCccccccCcccCh-HHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEE
Q 024225          155 LPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~il  230 (270)
                      |-..+++. ...++..+.+ +++.+.+.++    .......+-.+++.   ..+.+..+|||++.|++++..-...|+||
T Consensus       652 iG~FdQh~-~E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl  726 (807)
T KOG0066|consen  652 IGWFDQHA-NEALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL  726 (807)
T ss_pred             eechhhhh-HHhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence            21122221 1224444444 3444444433    23344555555543   34677899999999999987666789999


Q ss_pred             EEeCCCCCCChhhHHHHHHhhccc----eEEeccccchhhcc
Q 024225          231 IVDGNYLFLDGGVWKDVSSMFDEK----CYATSFKETYFNRE  268 (270)
Q Consensus       231 Ild~~~~~lDe~~~~~l~~~~~~~----i~v~~~~~~~~~r~  268 (270)
                      |+|+|+.-||-.....+.+.+++.    |.|+|  |+|++++
T Consensus       727 ILDEPTNNLDIESIDALaEAIney~GgVi~VsH--DeRLi~e  766 (807)
T KOG0066|consen  727 ILDEPTNNLDIESIDALAEAINEYNGGVIMVSH--DERLIVE  766 (807)
T ss_pred             EecCCCCCcchhhHHHHHHHHHhccCcEEEEec--ccceeee
Confidence            999999999988888888888743    55555  4555443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.54  E-value=1.9e-14  Score=132.59  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=100.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      +++--+++|.|++..     |.=-.=++..||++|++||||-|||||+++|+|.++   |++|.        ... ..++
T Consensus       342 lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~--------~~~-~~vS  404 (591)
T COG1245         342 LVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS--------EED-LKVS  404 (591)
T ss_pred             eeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC--------Ccc-ceEe
Confidence            456667888887643     222234578899999999999999999999999996   77774        111 1244


Q ss_pred             cCCCCccc-cccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          157 MDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       157 ~dg~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      +..+++.. .+.++.   +......... ..+.....++.+.|.+..  +.....+|||+.||++++.++..++++-++|
T Consensus       405 yKPQyI~~~~~gtV~---~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllD  480 (591)
T COG1245         405 YKPQYISPDYDGTVE---DLLRSAIRSA-FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLD  480 (591)
T ss_pred             ecceeecCCCCCcHH---HHHHHhhhhh-cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEec
Confidence            44444321 111221   1111111110 011122234555555442  4567799999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhc
Q 024225          234 GNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~  252 (270)
                      ||.+.||-+.+-.+...++
T Consensus       481 EPSA~LDvEqR~~vakvIR  499 (591)
T COG1245         481 EPSAYLDVEQRIIVAKVIR  499 (591)
T ss_pred             CchhhccHHHHHHHHHHHH
Confidence            9999999865555555554

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.53  E-value=4.7e-14  Score=124.54  Aligned_cols=72  Identities=11%  Similarity=-0.000  Sum_probs=56.0

Q ss_pred             HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEe
Q 024225          192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYAT  258 (270)
Q Consensus       192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~  258 (270)
                      .+.++.++++.   ......+|+|++||+.++.++..+   ++++|+|||+..+|+...+.+.++++.       .|+++
T Consensus       150 ~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiit  229 (261)
T cd03271         150 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE  229 (261)
T ss_pred             HHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            44555666643   445679999999999999998875   689999999999999877777776662       37888


Q ss_pred             ccccc
Q 024225          259 SFKET  263 (270)
Q Consensus       259 ~~~~~  263 (270)
                      |+.+.
T Consensus       230 H~~~~  234 (261)
T cd03271         230 HNLDV  234 (261)
T ss_pred             CCHHH
Confidence            87753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.52  E-value=4.5e-14  Score=118.38  Aligned_cols=178  Identities=16%  Similarity=0.056  Sum_probs=117.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-----CCCCC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-----VKPPD  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-----~~~p~  150 (270)
                      .+++.++.+.|+...   ..+-|+|++++.|....++|.||||||||+|+|+|--.   -.-|.+ ..+.     ..-..
T Consensus        13 aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~~   86 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLES   86 (291)
T ss_pred             eEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccccc
Confidence            589999999998643   25689999999999999999999999999999999642   111221 1110     00112


Q ss_pred             ceEEeecCCCCccc----cccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccC
Q 024225          151 VATVLPMDGFHLYL----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       151 ~g~~i~~dg~~~~~----~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      +|...++.|.-...    ...+...+....+..+|+... +.++-..+++-+.....-+....|-||++|+.++.-+..+
T Consensus        87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~-dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P  165 (291)
T KOG2355|consen   87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD-DPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP  165 (291)
T ss_pred             cCceeEecccccccccccccccccccccHHHHHhhccCC-ChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence            33322333221110    001111122223444555322 3345556666666665666778999999999999999889


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFK  261 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~  261 (270)
                      -++|++||.+.-||--.+..+.+++++        .+|.+|-.
T Consensus       166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF  208 (291)
T KOG2355|consen  166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF  208 (291)
T ss_pred             eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence            999999999999998888888888872        37777654

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.52  E-value=7e-14  Score=122.56  Aligned_cols=144  Identities=15%  Similarity=0.085  Sum_probs=101.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH---HHHhcCC--C
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE---AHARRGA--P  183 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~---~~~~~g~--~  183 (270)
                      ++||.|.|||||||+++.|...+.+              .+....++..|+|+.+.. ....+....   ....+..  |
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~--------------~g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P   65 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAR--------------EGIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP   65 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--------------cCCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence            5899999999999999999988841              233456699999986321 111000000   1123444  7


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcc----------cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHG----------VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g----------~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~  253 (270)
                      .+++.+.+.+.++.++.++....|.|++.          .+.+.... .+..++++||+||.+.++.- ...++++++|.
T Consensus        66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~-~~~~lr~~~Dl  143 (277)
T cd02029          66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVT-EGYNVAQHADL  143 (277)
T ss_pred             ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCccccc-ccHHHHHhCCe
Confidence            88899999999999999999988988662          12222211 13367999999999954421 12599999999


Q ss_pred             ceEEeccccchhhccC
Q 024225          254 KCYATSFKETYFNREA  269 (270)
Q Consensus       254 ~i~v~~~~~~~~~r~~  269 (270)
                      +|||+++.+.++.|+.
T Consensus       144 kIfVd~~~dlr~irRI  159 (277)
T cd02029         144 LVGVVPIINLEWIQKI  159 (277)
T ss_pred             EEEecCcHHHHHHHHH
Confidence            9999999999998863

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.51  E-value=3.6e-15  Score=128.00  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=90.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCC----cccCCCCCCCC--C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQK----ASSFDSQVKPP--D  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~-~~~----G~~~~~~~~~p--~  150 (270)
                      ++++|.. .|++..    +++++++     +++||+|||||||||++++|...+.... ...    |.........|  +
T Consensus         6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~   75 (212)
T cd03274           6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLD   75 (212)
T ss_pred             EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence            5667776 676533    6678776     8999999999999999999985542100 000    00111111111  1


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHH--HHHHHHHhhcc--CCCcCCCCCCcccCChhhhhhhhcc-
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--LLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL-  225 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~l~~--~~~~~~~~~S~g~~~rv~~~~~l~~-  225 (270)
                      ...+.......         .... ..+..|+.......  ...++.+.+.+  ..+..+..+|+|+++|+.++.+++. 
T Consensus        76 ~~~~~~~~~~~---------~~~~-~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~  145 (212)
T cd03274          76 SCSVEVHFQEI---------IDKP-LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALH  145 (212)
T ss_pred             eEEEEEEEEeC---------CCHH-HHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhc
Confidence            11111111100         0000 00112221100000  00111122222  2344566899999999999998753 


Q ss_pred             ---CCcEEEEeCCCCCCChhhHHHHHHhhccc------eEEeccc
Q 024225          226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK------CYATSFK  261 (270)
Q Consensus       226 ---~~~ilIld~~~~~lDe~~~~~l~~~~~~~------i~v~~~~  261 (270)
                         +++++++|||+..+|+..++.+.+++...      |+++++.
T Consensus       146 ~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~  190 (212)
T cd03274         146 HYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN  190 (212)
T ss_pred             ccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH
Confidence               47999999999999998887777777633      6777664

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK07429 phosphoribulokinase; Provisional

Probab=99.50  E-value=9.4e-14  Score=126.32  Aligned_cols=133  Identities=24%  Similarity=0.382  Sum_probs=99.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC--
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--  182 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~--  182 (270)
                      .+.-+|||.|+||||||||++.|++++                .+..+.++.+|+++..+        .. .++..|.  
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll----------------~~~~~~vi~~Dd~~~~~--------~~-~r~~~g~~~   60 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLL----------------GEELVTVICTDDYHSYD--------RK-QRKELGITA   60 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHh----------------ccCceEEEEecccccCC--------HH-HHHhcCCcc
Confidence            345799999999999999999999998                45556678999875221        11 1233443  


Q ss_pred             --CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEecc
Q 024225          183 --PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSF  260 (270)
Q Consensus       183 --~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~  260 (270)
                        +...+...+.+.++.+..++.+..|.|++.........  ...+.+++|+||.+++.++    .+.+++|.+|||+++
T Consensus        61 l~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~----~lr~~~D~~I~Vda~  134 (327)
T PRK07429         61 LDPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDE----RVRELYDFKVYLDPP  134 (327)
T ss_pred             cCccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcH----hHHhhCCEEEEEECC
Confidence              23344566777888888898888899988766544311  2235789999999988884    788999999999999


Q ss_pred             ccchhhcc
Q 024225          261 KETYFNRE  268 (270)
Q Consensus       261 ~~~~~~r~  268 (270)
                      .++++.|+
T Consensus       135 ~evr~~Rr  142 (327)
T PRK07429        135 EEVKIAWK  142 (327)
T ss_pred             HHHHHHHH
Confidence            99997553

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=4.5e-14  Score=131.67  Aligned_cols=167  Identities=14%  Similarity=0.003  Sum_probs=104.3

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      -|.+.+.+..|++..    .|.+-++++..|...||+|+||+|||||+|+|+.---+.             .|..-.+..
T Consensus        80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~-------------f~veqE~~g  142 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSG-------------FHVEQEVRG  142 (582)
T ss_pred             ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCc-------------cCchhheec
Confidence            477788999999754    569999999999999999999999999999998721000             111111001


Q ss_pred             cCCCCccccccCcc-cChHHHHHhcCCCCCccHHHHHH-HHHhhccCCC---cCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          157 MDGFHLYLSQLDAM-EDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       157 ~dg~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~~~-~l~~l~~~~~---~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      .+-.++.. .+... ....+..+...+........+.. +|..+++..+   .....||||=+-|+++++++-.+||+|+
T Consensus       143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL  221 (582)
T KOG0062|consen  143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL  221 (582)
T ss_pred             cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe
Confidence            11111100 01111 01111111111111112222222 5666666543   3556999999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                      +|||+..||-....-+...+.    ..+.|+||.
T Consensus       222 LDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr  255 (582)
T KOG0062|consen  222 LDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDR  255 (582)
T ss_pred             ecCCcccchhHHHHHHHHHHhhCCceEEEEeccH
Confidence            999999999876666666665    335555553

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.50  E-value=1.6e-13  Score=112.51  Aligned_cols=135  Identities=21%  Similarity=0.185  Sum_probs=85.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      +++++||...-        -|..+|.++..||++-++||||||||||+..++|++                 |-+|. |.
T Consensus         3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-----------------~~sGs-i~   56 (248)
T COG4138           3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-----------------SGSGS-IQ   56 (248)
T ss_pred             eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-----------------CCCce-EE
Confidence            45666665433        246678899999999999999999999999999996                 34455 66


Q ss_pred             cCCCCccccccCcccChHHHHHhc--------------------CCCCCccHHHHHHHHHhhccCCC--cCCCCCCcccC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARR--------------------GAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVG  214 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~l~~l~~~~~--~~~~~~S~g~~  214 (270)
                      ++|..+...     +..+..+.+.                    ..|.+.....+..+...+.++.+  ..+..+|||+-
T Consensus        57 ~~G~~l~~~-----~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEW  131 (248)
T COG4138          57 FAGQPLEAW-----SATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW  131 (248)
T ss_pred             ECCcchhHH-----hHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccc
Confidence            666654321     1111111110                    00111111122333344444433  35668999999


Q ss_pred             Chhhhhh-------hhccCCcEEEEeCCCCCCChh
Q 024225          215 DPVEDDI-------LVGLQHKVVIVDGNYLFLDGG  242 (270)
Q Consensus       215 ~rv~~~~-------~l~~~~~ilIld~~~~~lDe~  242 (270)
                      ||+-++-       .+++..+++++|||+..+|-.
T Consensus       132 QRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvA  166 (248)
T COG4138         132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA  166 (248)
T ss_pred             eeeEEeEEEEEecCCCCccceeEEecCCCcchhHH
Confidence            9998773       244466799999999999963

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.49  E-value=2.3e-14  Score=122.91  Aligned_cols=161  Identities=15%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC-C---CCC-CCCC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-D---SQV-KPPD  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~-~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~-~---~~~-~~p~  150 (270)
                      .++++|.. .|.+.       .+++|+.. +|++++|+||||||||||+++|++.+..  +..+... +   ... ..+.
T Consensus         5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~   74 (213)
T cd03279           5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED   74 (213)
T ss_pred             EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence            37788888 55431       45566543 5899999999999999999999965410  1111100 0   000 0111


Q ss_pred             ce--EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH--HHhhcc--CCCcCCCCCCcccCChhhhhhhhc
Q 024225          151 VA--TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC--LKNLRN--QGSVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       151 ~g--~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~--l~~l~~--~~~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                      ..  .++..+....+    ...+       ..++    +...+.+.  +....+  ..+..+..+|+|+++|++++.+++
T Consensus        75 ~~~v~~~f~~~~~~~----~~~r-------~~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~  139 (213)
T cd03279          75 TAEVSFTFQLGGKKY----RVER-------SRGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA  139 (213)
T ss_pred             cEEEEEEEEECCeEE----EEEE-------ecCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence            11  11222221100    1111       1121    22222211  111111  124456689999999999999886


Q ss_pred             c----------CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          225 L----------QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       225 ~----------~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      .          +++++|+|||+..+|+..++.+.+++.       ..|+++|+.+
T Consensus       140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~  194 (213)
T cd03279         140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE  194 (213)
T ss_pred             hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence            3          568999999999999977776666554       2367777664

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.48  E-value=2.4e-13  Score=128.34  Aligned_cols=177  Identities=15%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccCCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-~~G~~~~~~~~~p~~g~~  154 (270)
                      +.+++++|+..-++.  ....++|+||+|++|.-+-|.||||||||+|+|.|+|+    || .+|.+.......|...-+
T Consensus       432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL----Wp~~~G~l~k~~~~~~~~lff  505 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL----WPSTGGKLTKPTDGGPKDLFF  505 (659)
T ss_pred             ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc----cccCCCeEEecccCCCCceEE
Confidence            679999999999874  23356899999999999999999999999999999997    67 455521110001222233


Q ss_pred             eecCCCCccccccCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccC--------CC-----cCCCCCCcccCChhhhh
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--------GS-----VYAPSFDHGVGDPVEDD  220 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~~--------~~-----~~~~~~S~g~~~rv~~~  220 (270)
                      +++..|...-   +.++..-+. .+........+.+.+...+++++++        .+     -+...+|+|++||++.|
T Consensus       506 lPQrPYmt~G---TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A  582 (659)
T KOG0060|consen  506 LPQRPYMTLG---TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA  582 (659)
T ss_pred             ecCCCCcccc---chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence            4444442110   000000000 0000111223456677778877764        11     24458899999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc--eEEeccc
Q 024225          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK--CYATSFK  261 (270)
Q Consensus       221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~--i~v~~~~  261 (270)
                      +.+-.+|++-|+||.+..+|+..-..+-.++++.  -|+++.+
T Consensus       583 RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgH  625 (659)
T KOG0060|consen  583 RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGH  625 (659)
T ss_pred             HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEecc
Confidence            9999999999999999999986666665555522  2445443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.48  E-value=6.9e-14  Score=131.13  Aligned_cols=158  Identities=14%  Similarity=0.051  Sum_probs=98.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ..++++|+++.|.+..    .++|+.|++.+|+.+||+|+|||||||++++|.|...   |           .|..-.+.
T Consensus        74 ~dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P-----------~p~~~d~y  135 (614)
T KOG0927|consen   74 RDVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---P-----------IPEHIDFY  135 (614)
T ss_pred             ccceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---C-----------CCcccchh
Confidence            4589999999998744    7799999999999999999999999999999999862   2           11111111


Q ss_pred             ecCCCCccccccCccc-----------ChHHHHHhcCC-CCCccHHHHHHH-------------------HHhhccC---
Q 024225          156 PMDGFHLYLSQLDAME-----------DPKEAHARRGA-PWTFNPLLLLNC-------------------LKNLRNQ---  201 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~-----------~~~~~~~~~g~-~~~~~~~~~~~~-------------------l~~l~~~---  201 (270)
                      .++-...+. ..++.+           ..++..+++.- ..+.+.+.+.++                   +-.+++.   
T Consensus       136 ~ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m  214 (614)
T KOG0927|consen  136 LLSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM  214 (614)
T ss_pred             hhcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence            111111110 011100           00111111111 011111112111                   1111221   


Q ss_pred             CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       202 ~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .......||+|.+.|++++.++-..|++|++|||+..||.....-+.+.+.
T Consensus       215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~  265 (614)
T KOG0927|consen  215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA  265 (614)
T ss_pred             HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence            234566999999999999999999999999999999999865555554443

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.47  E-value=7.1e-14  Score=122.80  Aligned_cols=152  Identities=9%  Similarity=0.033  Sum_probs=90.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-cc-CCCC--------C--CCCCceEEeecCCCC-------cccccc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-FDSQ--------V--KPPDVATVLPMDGFH-------LYLSQL  167 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G-~~-~~~~--------~--~~p~~g~~i~~dg~~-------~~~~~l  167 (270)
                      +.+++|+||||||||||+++|++++.   +..| ++ ..+.        .  .......++.++...       -..+.+
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l  101 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI  101 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence            67999999999999999999999984   3322 22 1110        0  011123334443210       001112


Q ss_pred             CcccChHHHHHhcC-C-CCCccHHHHHHHHHhhccCC----------------------CcCCCCCCcccCChhhhhhhh
Q 024225          168 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       168 ~~~~~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~~~~----------------------~~~~~~~S~g~~~rv~~~~~l  223 (270)
                      ++.++......... + ........+.+.++.+++..                      +.++..+|+|++||++++.++
T Consensus       102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  181 (251)
T cd03273         102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL  181 (251)
T ss_pred             EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence            32222211110000 1 11122345566677666541                      245669999999999999987


Q ss_pred             c----cCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225          224 G----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK  261 (270)
Q Consensus       224 ~----~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~  261 (270)
                      .    .+++++++|||+..+|....+.+.+++..      .|+++|..
T Consensus       182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~  229 (251)
T cd03273         182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE  229 (251)
T ss_pred             HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            6    46799999999999998777777666652      37888774

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN02796 D-glycerate 3-kinase

Probab=99.43  E-value=2.2e-13  Score=123.66  Aligned_cols=131  Identities=24%  Similarity=0.355  Sum_probs=92.8

Q ss_pred             cccccceec---CCCe-----EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccc
Q 024225           96 PTSALASNV---NVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQ  166 (270)
Q Consensus        96 ~l~~isl~i---~~ge-----ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~  166 (270)
                      +++++++.+   ++|+     ++||+|+||||||||++.|.+++..              .. ..+. +++||+++...+
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~--------------~g~~~g~-IsiDdfYLt~~e  145 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNA--------------TGRRAAS-LSIDDFYLTAAD  145 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcc--------------cCCceeE-EEECCcccchhh
Confidence            457888776   3444     5999999999999999999999940              11 2354 999999875432


Q ss_pred             cCcc--cCh-HHHHHhcCCCCCccHHHHHHHHHhhc----cCCCcCCCCCCccc----CChhhhh--hhhccCCcEEEEe
Q 024225          167 LDAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHGV----GDPVEDD--ILVGLQHKVVIVD  233 (270)
Q Consensus       167 l~~~--~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~----~~~~~~~~~~S~g~----~~rv~~~--~~l~~~~~ilIld  233 (270)
                      ....  +++ ......+|.+.++|.....++++.+.    .+..+.+|.|++..    .+|....  ..+..+.+|||+|
T Consensus       146 ~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~E  225 (347)
T PLN02796        146 QAKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFE  225 (347)
T ss_pred             HHHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEc
Confidence            2211  111 12344567788899888888888887    56778999998765    4565432  1344578999999


Q ss_pred             CCCCCCCh
Q 024225          234 GNYLFLDG  241 (270)
Q Consensus       234 ~~~~~lDe  241 (270)
                      |.+++.-+
T Consensus       226 Gw~vG~~p  233 (347)
T PLN02796        226 GWMLGFKP  233 (347)
T ss_pred             CcccCCCC
Confidence            99999854

>PRK15453 phosphoribulokinase; Provisional

Probab=99.43  E-value=1.3e-12  Score=115.53  Aligned_cols=149  Identities=15%  Similarity=0.093  Sum_probs=100.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCcc-ccccCcccChHH-HHHhcCC-
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKE-AHARRGA-  182 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~-~~~l~~~~~~~~-~~~~~g~-  182 (270)
                      ++-+|||.|.|||||||+++.|...+.+              ......++..|+|+.+ +.++........ ....+.. 
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf   69 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHF   69 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCC
Confidence            4579999999999999999999987731              2223556899999853 222221110000 0112334 


Q ss_pred             -CCCccHHHHHHHHHhhccCCCcCCCCCCcc--c---CChhhhh----hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--V---GDPVEDD----ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       183 -~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g--~---~~rv~~~----~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                       |.+++.+.+.+.++.++.+.....+.|++.  +   ..+....    ..+..++++||+||.+.+... ....+++++|
T Consensus        70 ~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~-~~~~lr~~~D  148 (290)
T PRK15453         70 GPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVT-DQVDVAQHVD  148 (290)
T ss_pred             CCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccccc-ccHHHHHhCC
Confidence             678888889999999988776666666421  1   1111111    124356899999999988531 1268999999


Q ss_pred             cceEEeccccchhhccC
Q 024225          253 EKCYATSFKETYFNREA  269 (270)
Q Consensus       253 ~~i~v~~~~~~~~~r~~  269 (270)
                      .+|||+++.+.+++|+.
T Consensus       149 lkIfVdp~~dlr~irRI  165 (290)
T PRK15453        149 LLIGVVPIVNLEWIQKI  165 (290)
T ss_pred             eeEeeCCcHhHHHHHHH
Confidence            99999999999998863

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.42  E-value=7.2e-13  Score=113.08  Aligned_cols=60  Identities=12%  Similarity=0.010  Sum_probs=46.7

Q ss_pred             CcCCCCCCcccCCh------hhhhhhhccCCcEEEEeCCCCCCChhhHH-HHHHhhc--------cceEEecccc
Q 024225          203 SVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGVWK-DVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       203 ~~~~~~~S~g~~~r------v~~~~~l~~~~~ilIld~~~~~lDe~~~~-~l~~~~~--------~~i~v~~~~~  262 (270)
                      +..+..+|+|++++      ++++.++..+++++++|||+..+|+..++ .+.+++.        ..|+++|+.+
T Consensus       110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~  184 (204)
T cd03240         110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE  184 (204)
T ss_pred             hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH
Confidence            34567899999996      56777888899999999999999997777 6666664        1367777654

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.41  E-value=2.9e-12  Score=108.86  Aligned_cols=136  Identities=12%  Similarity=0.092  Sum_probs=79.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcc----cCCCCCCCCCceEEeecCCCCccccccCc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS----SFDSQVKPPDVATVLPMDGFHLYLSQLDA  169 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~----~~~~~~~~p~~g~~i~~dg~~~~~~~l~~  169 (270)
                      .++++.+++.+| +.+|+||||||||||+..|...+.....  ..|.    ......... ... +.+++...+.     
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~-~i~-~~~~~~~~~~-----   82 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSA-KIT-VTLKNQGLDA-----   82 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeE-EEE-EEEEcCCccC-----
Confidence            346667777776 7799999999999999999876531000  0011    000000000 111 1111111110     


Q ss_pred             ccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh----ccCCcEEEEeCCCCCCChhhHH
Q 024225          170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWK  245 (270)
Q Consensus       170 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l----~~~~~ilIld~~~~~lDe~~~~  245 (270)
                        +         .........+.++++. .......+..||+|+++|++++.++    ..+++++|+|||+..+|.....
T Consensus        83 --~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~  150 (198)
T cd03276          83 --N---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK  150 (198)
T ss_pred             --C---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence              0         0000111233444544 2233556779999999999999888    5799999999999999997555


Q ss_pred             HHHHhh
Q 024225          246 DVSSMF  251 (270)
Q Consensus       246 ~l~~~~  251 (270)
                      .+.+++
T Consensus       151 ~~~~~l  156 (198)
T cd03276         151 ISTDLL  156 (198)
T ss_pred             HHHHHH
Confidence            555544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK07667 uridine kinase; Provisional

Probab=99.37  E-value=2e-12  Score=109.38  Aligned_cols=135  Identities=18%  Similarity=0.307  Sum_probs=93.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC-
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-  183 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-  183 (270)
                      ...-+|||.|++||||||+++.|...+++              ......++.+|+++.....          +...+.. 
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~--------------~~~~~~~i~~Dd~~~~~~~----------~~~~~~~~   70 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQ--------------EGIPFHIFHIDDYIVERNK----------RYHTGFEE   70 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHh--------------CCCcEEEEEcCcccchhhh----------HHhcCCCc
Confidence            34579999999999999999999998841              1223456899987643211          1111111 


Q ss_pred             ------CCccHHHHH-HHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceE
Q 024225          184 ------WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY  256 (270)
Q Consensus       184 ------~~~~~~~~~-~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~  256 (270)
                            ..++...+. .++..+..+..+..|.|+.....+......+ ...+++|+|+++++-     ..+.+++|..||
T Consensus        71 ~~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~~-~~~~vvIvEG~~l~~-----~~~~~~~d~~v~  144 (193)
T PRK07667         71 WYEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQI-PIVGVIVIEGVFLQR-----KEWRDFFHYMVY  144 (193)
T ss_pred             hhhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeeccccccccccceec-CCCCEEEEEehhhhh-----hhHHhhceEEEE
Confidence                  123444443 4567788887888899988776654322222 457899999999643     367789999999


Q ss_pred             EeccccchhhccC
Q 024225          257 ATSFKETYFNREA  269 (270)
Q Consensus       257 v~~~~~~~~~r~~  269 (270)
                      |+++.++++.|..
T Consensus       145 V~~~~~~~~~R~~  157 (193)
T PRK07667        145 LDCPRETRFLRES  157 (193)
T ss_pred             EECCHHHHHHHHh
Confidence            9999999988863

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.37  E-value=1.6e-12  Score=118.93  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=102.0

Q ss_pred             Eeccchhhhhhhhcc--cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           79 EARCMDEVYDALAQR--LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~--v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      ++.+|...|+..+..  -.+++|+||++++|++++|+|+|||||||++++|+|.....+.        ..-+|++|. +.
T Consensus       379 e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~e--------e~y~p~sg~-v~  449 (593)
T COG2401         379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGE--------EKYRPDSGK-VE  449 (593)
T ss_pred             HHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccc--------cccCCCCCc-ee
Confidence            344566667654422  2357999999999999999999999999999999999743221        112344443 22


Q ss_pred             cCCCCcc-------ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC----cCCCCCCcccCChhhhhhhhcc
Q 024225          157 MDGFHLY-------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       157 ~dg~~~~-------~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~----~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                      +--..+.       .+.+....    ..+.++ ...-|.....+++...++...    ....++|-||+.|..++..+..
T Consensus       450 vp~nt~~a~iPge~Ep~f~~~t----ilehl~-s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae  524 (593)
T COG2401         450 VPKNTVSALIPGEYEPEFGEVT----ILEHLR-SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE  524 (593)
T ss_pred             ccccchhhccCcccccccCchh----HHHHHh-hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc
Confidence            1111000       01111000    111111 122355556677777776543    2345889999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhh
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMF  251 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~  251 (270)
                      .+.++++|+--+.||+-....+..-+
T Consensus       525 rpn~~~iDEF~AhLD~~TA~rVArki  550 (593)
T COG2401         525 RPNVLLIDEFAAHLDELTAVRVARKI  550 (593)
T ss_pred             CCCcEEhhhhhhhcCHHHHHHHHHHH
Confidence            99999999999999995544444333

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.36  E-value=1.5e-12  Score=132.72  Aligned_cols=166  Identities=13%  Similarity=0.066  Sum_probs=112.7

Q ss_pred             cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC----CCCceEEeecCCCCccccc
Q 024225           92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----PPDVATVLPMDGFHLYLSQ  166 (270)
Q Consensus        92 ~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~----~p~~g~~i~~dg~~~~~~~  166 (270)
                      .+...|+||+=-+.+|.+.||+|+||||||||+++|+|.... --.+|++ ++|...    .+.+..++.+++.|+..  
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~--  878 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE--  878 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcc--
Confidence            334567999999999999999999999999999999998520 0113443 333211    12233348888888754  


Q ss_pred             cCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhccC--CCcCC----CCCCcccCChhhhhhhhccCC-cEEEEeCC
Q 024225          167 LDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQ--GSVYA----PSFDHGVGDPVEDDILVGLQH-KVVIVDGN  235 (270)
Q Consensus       167 l~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~l~~~--~~~~~----~~~S~g~~~rv~~~~~l~~~~-~ilIld~~  235 (270)
                      +++.|-..+-... ..+...    ..+.+.++++.|.+.  .+.-+    .-+|.+|++|+.++..|..+| -+|.+|||
T Consensus       879 ~TVrESL~fSA~L-Rlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP  957 (1391)
T KOG0065|consen  879 LTVRESLRFSAAL-RLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP  957 (1391)
T ss_pred             cchHHHHHHHHHH-cCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence            7776655443322 222222    224567788877776  22222    358999999999999888888 79999999


Q ss_pred             CCCCChhhHHHHHHhhc------cceEEeccc
Q 024225          236 YLFLDGGVWKDVSSMFD------EKCYATSFK  261 (270)
Q Consensus       236 ~~~lDe~~~~~l~~~~~------~~i~v~~~~  261 (270)
                      +.+||.....-+.++++      ..|.-|+++
T Consensus       958 TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ  989 (1391)
T KOG0065|consen  958 TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ  989 (1391)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            99999854444444333      557777776

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.32  E-value=2.1e-12  Score=113.33  Aligned_cols=55  Identities=13%  Similarity=0.062  Sum_probs=44.4

Q ss_pred             CCCCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          207 PSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       207 ~~~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      ..+|+|++++++++.++..    +++++|+|||+..+|...+..+.+++.       ..|+++|+.
T Consensus       154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~  219 (247)
T cd03275         154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE  219 (247)
T ss_pred             HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH
Confidence            5789999999999998875    389999999999999976666666555       237777764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.32  E-value=9.2e-12  Score=126.64  Aligned_cols=73  Identities=11%  Similarity=-0.007  Sum_probs=57.7

Q ss_pred             HHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCC---cEEEEeCCCCCCChhhHHHHHHhhc-------cceEE
Q 024225          191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYA  257 (270)
Q Consensus       191 ~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~---~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v  257 (270)
                      ..+.++.++++.   ...+..||+|++||+.++.++..++   +++|+|||+..||....+.+.++++       ..|++
T Consensus       810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii  889 (943)
T PRK00349        810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI  889 (943)
T ss_pred             HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            345666677653   4466799999999999999998888   9999999999999977777766665       23788


Q ss_pred             eccccc
Q 024225          258 TSFKET  263 (270)
Q Consensus       258 ~~~~~~  263 (270)
                      +|+.+.
T Consensus       890 tH~~~~  895 (943)
T PRK00349        890 EHNLDV  895 (943)
T ss_pred             ecCHHH
Confidence            887754

>PRK06696 uridine kinase; Validated

Probab=99.29  E-value=5.5e-12  Score=109.01  Aligned_cols=136  Identities=25%  Similarity=0.314  Sum_probs=88.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcC--
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--  181 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g--  181 (270)
                      -...-+|||.|++|||||||++.|+..++.              .+.....+.+|+|+....          .+...+  
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~--------------~g~~v~~~~~Ddf~~~~~----------~r~~~~~~   74 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKK--------------RGRPVIRASIDDFHNPRV----------IRYRRGRE   74 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHH--------------cCCeEEEeccccccCCHH----------HHHHcCCC
Confidence            345679999999999999999999999841              122334467999975431          111111  


Q ss_pred             ----C-CCCccHHHHHHHHHh-hccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225          182 ----A-PWTFNPLLLLNCLKN-LRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (270)
Q Consensus       182 ----~-~~~~~~~~~~~~l~~-l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~  253 (270)
                          + ...++...+.+.+-. +..+.  .+..+.|+.....+...........+++|+|+++++-+     .+.+.++.
T Consensus        75 ~~~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~-----~~~~~~d~  149 (223)
T PRK06696         75 SAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP-----ELRDLWDY  149 (223)
T ss_pred             ChhhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhh-----hHHhhCCE
Confidence                1 234566655554433 32322  24445666655444322222334577999999998643     77889999


Q ss_pred             ceEEeccccchhhcc
Q 024225          254 KCYATSFKETYFNRE  268 (270)
Q Consensus       254 ~i~v~~~~~~~~~r~  268 (270)
                      .|||+++.++++.|+
T Consensus       150 ~i~v~~~~e~~~~R~  164 (223)
T PRK06696        150 KIFLDTDFEVSRRRG  164 (223)
T ss_pred             EEEEECCHHHHHHHH
Confidence            999999999998875

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=99.28  E-value=1e-11  Score=114.95  Aligned_cols=121  Identities=21%  Similarity=0.322  Sum_probs=82.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccccCcc--cCh-HHHHHhcC
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRG  181 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~l~~~--~~~-~~~~~~~g  181 (270)
                      +.-+|||+|++|||||||++.|.++++.              .. ..+. |.+||+++...+....  .++ .....-+|
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~--------------~g~~vgv-ISiDDfYLt~eer~kL~~~nP~n~LL~~RG  275 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRV--------------TGRKSAT-LSIDDFYLTAEGQAELRERNPGNALLELRG  275 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcc--------------cCCceEE-EEECCccCChHHHHHHHhhCccchhhcccC
Confidence            4689999999999999999999999840              11 2444 9999998643211110  011 01122345


Q ss_pred             CCCCccHHHHHHHHHhh----ccCCCcCCCCCCccc----CChhhhh--hhhccCCcEEEEeCCCCCCCh
Q 024225          182 APWTFNPLLLLNCLKNL----RNQGSVYAPSFDHGV----GDPVEDD--ILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       182 ~~~~~~~~~~~~~l~~l----~~~~~~~~~~~S~g~----~~rv~~~--~~l~~~~~ilIld~~~~~lDe  241 (270)
                      .+..+|.....+.++.+    +.+..+.+|.|+...    .+|....  ..+..+.+|||+||.+++..+
T Consensus       276 ~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P  345 (460)
T PLN03046        276 NAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKP  345 (460)
T ss_pred             CCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCC
Confidence            66778877776666666    567788999998755    5576542  224467899999999998854

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.8e-11  Score=114.48  Aligned_cols=163  Identities=20%  Similarity=0.203  Sum_probs=105.5

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      .+++++++++..-        .++|+||++.+|||+||.|--|||+|-|++.|.|.-.   +..|+              
T Consensus       261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~--------------  315 (500)
T COG1129         261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGE--------------  315 (500)
T ss_pred             CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCce--------------
Confidence            3567788776543        3589999999999999999999999999999999652   33444              


Q ss_pred             eecCCCCcccc------------------------ccCcccChHHH-HHh-cCCCCCccHH----HHHHHHHhhccC---
Q 024225          155 LPMDGFHLYLS------------------------QLDAMEDPKEA-HAR-RGAPWTFNPL----LLLNCLKNLRNQ---  201 (270)
Q Consensus       155 i~~dg~~~~~~------------------------~l~~~~~~~~~-~~~-~g~~~~~~~~----~~~~~l~~l~~~---  201 (270)
                      +.+||..+...                        .++..+|.... ..+ .... -.+..    ......+.+...   
T Consensus       316 i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~-~i~~~~e~~~~~~~~~~l~Ik~~s  394 (500)
T COG1129         316 ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG-LIDRRKERALAERYIRRLRIKTPS  394 (500)
T ss_pred             EEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc-ccChHHHHHHHHHHHHhcCcccCC
Confidence            44444432210                        01112222111 001 0000 11111    122333333332   


Q ss_pred             CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc-------eEEeccccc
Q 024225          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-------CYATSFKET  263 (270)
Q Consensus       202 ~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~-------i~v~~~~~~  263 (270)
                      .+..+..+|||.+|++.++.++..+|++||+|||+-+.|=....++-+++.+.       ++++.+.++
T Consensus       395 ~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE  463 (500)
T COG1129         395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE  463 (500)
T ss_pred             ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            23455689999999999999999999999999999999988788877777732       566665543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.25  E-value=4.5e-12  Score=107.75  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.|++++.  |++++|+||||||||||+|.|++..
T Consensus        16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            447776655  7999999999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.23  E-value=3.4e-11  Score=127.94  Aligned_cols=71  Identities=10%  Similarity=-0.068  Sum_probs=55.9

Q ss_pred             HHHHhhccCC---CcCCCCCCcccCChhhhhhhhc---cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEec
Q 024225          193 NCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATS  259 (270)
Q Consensus       193 ~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~---~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~  259 (270)
                      +.++.++++.   +..+..+|+||+||+.++.++.   .+++++|+|||+..||....+.+.++++       ..|+++|
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            4555555542   3456789999999999999996   5899999999999999987777777775       2378888


Q ss_pred             cccc
Q 024225          260 FKET  263 (270)
Q Consensus       260 ~~~~  263 (270)
                      +.+.
T Consensus       871 dl~~  874 (1809)
T PRK00635        871 NMHV  874 (1809)
T ss_pred             CHHH
Confidence            8754

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.22  E-value=1.3e-11  Score=104.80  Aligned_cols=109  Identities=9%  Similarity=0.021  Sum_probs=67.3

Q ss_pred             ccccceecCCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChH
Q 024225           97 TSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (270)
Q Consensus        97 l~~isl~i~~ge-ivgL~GpnGsGKSTLlk~L~-gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~  174 (270)
                      +.+++|++.+|+ +++|.||||||||||+|.|+ +.+                .+..|..++....              
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~----------------~~~~G~~vp~~~~--------------   66 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTL----------------MAQSGLPIPAAEG--------------   66 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHH----------------HHHcCCCcccccc--------------
Confidence            467899999995 89999999999999999998 332                1111211111100              


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHH
Q 024225          175 EAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (270)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l  247 (270)
                         ...++..+.        +..+...  .......||+|++++..++..+ .+++++++|||+..+|...+..+
T Consensus        67 ---~~~~~~~~~--------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i  129 (200)
T cd03280          67 ---SSLPVFENI--------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAAL  129 (200)
T ss_pred             ---ccCcCccEE--------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHH
Confidence               001100000        0000000  1223457899999988876554 68999999999999998655444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.22  E-value=4.7e-11  Score=121.30  Aligned_cols=72  Identities=11%  Similarity=-0.003  Sum_probs=55.3

Q ss_pred             HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhcc---CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225          192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT  258 (270)
Q Consensus       192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~---~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~  258 (270)
                      .++++.++++.   ......||+||+||+.++.++..   +++++|+|||+..||....+.+.++++       ..|+++
T Consensus       809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~  888 (924)
T TIGR00630       809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE  888 (924)
T ss_pred             HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            45566666642   34567999999999999999875   479999999999999987777776665       236777


Q ss_pred             ccccc
Q 024225          259 SFKET  263 (270)
Q Consensus       259 ~~~~~  263 (270)
                      |+.+.
T Consensus       889 H~~~~  893 (924)
T TIGR00630       889 HNLDV  893 (924)
T ss_pred             CCHHH
Confidence            77753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=3.2e-11  Score=112.86  Aligned_cols=173  Identities=13%  Similarity=0.099  Sum_probs=113.1

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      .|.+++.+|++.|...+-  ..+.+++++++.-..++++|+||+||||++|++.+.+.   |.+|.+..+...  ..+  
T Consensus       360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~r~--ri~--  430 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHPRL--RIK--  430 (582)
T ss_pred             CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecccc--eec--
Confidence            467999999999976431  35689999999999999999999999999999999873   333331111000  000  


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCc---CCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV---YAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~---~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                       ..-.++...  ++...+.-.. ...-++.. ..+.+...+..+++..+.   .+..+||||+.|+++|...-..|.+||
T Consensus       431 -~f~Qhhvd~--l~~~v~~vd~-~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV  505 (582)
T KOG0062|consen  431 -YFAQHHVDF--LDKNVNAVDF-MEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV  505 (582)
T ss_pred             -chhHhhhhH--HHHHhHHHHH-HHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence             000011111  0110000001 11112222 345566777777776432   345799999999999988888999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhccc----eEEeccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFDEK----CYATSFK  261 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~~~----i~v~~~~  261 (270)
                      +|||+..||-.....+...++..    |-|+||.
T Consensus       506 LDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~  539 (582)
T KOG0062|consen  506 LDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDE  539 (582)
T ss_pred             ecCCCccccHHHHHHHHHHHHhcCCcEEEEECcH
Confidence            99999999987777777766632    6677664

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.15  E-value=9.8e-11  Score=109.96  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      -|.++|+-..-++..  + ++..++|+|++|--+-|.||||||||+|.|+|.|+    ||..+....-  .+|+...+|+
T Consensus       481 gI~lenIpvItP~~~--v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL----WPvy~g~L~~--P~~~~mFYIP  551 (728)
T KOG0064|consen  481 GIILENIPVITPAGD--V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL----WPVYNGLLSI--PRPNNIFYIP  551 (728)
T ss_pred             ceEEecCceeccCcc--e-eecceeEEecCCceEEEECCCCccHHHHHHHHhcc----CcccCCeeec--CCCcceEecc
Confidence            367778777777633  3 46899999999999999999999999999999997    6764432111  1334444444


Q ss_pred             cCCCCcc---ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--------C---CcCCCCCCcccCChhhhhhh
Q 024225          157 MDGFHLY---LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------G---SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       157 ~dg~~~~---~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--------~---~~~~~~~S~g~~~rv~~~~~  222 (270)
                      +..|.-.   +.++ ...+.....++.|+.++ |   +..+++.+.+.        -   .-+...+|||++||+++++.
T Consensus       552 QRPYms~gtlRDQI-IYPdS~e~~~~kg~~d~-d---L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm  626 (728)
T KOG0064|consen  552 QRPYMSGGTLRDQI-IYPDSSEQMKRKGYTDQ-D---LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM  626 (728)
T ss_pred             CCCccCcCccccee-ecCCcHHHHHhcCCCHH-H---HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence            4444210   0111 11122233445565432 2   33344433321        1   12445889999999998887


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .-..|+..++||.+.......-..+-+..+
T Consensus       627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak  656 (728)
T KOG0064|consen  627 FYHRPKYALLDECTSAVSIDVEGKIFQAAK  656 (728)
T ss_pred             HhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence            777777777777776665444444444443

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.10  E-value=3.5e-10  Score=105.60  Aligned_cols=171  Identities=13%  Similarity=0.085  Sum_probs=112.6

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      .+++++++|+..-...   +.++++|||++..|||+||+|-.|-|-+.|+..|+|+.+                +..|. 
T Consensus       255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~----------------~~~G~-  314 (501)
T COG3845         255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK----------------PASGR-  314 (501)
T ss_pred             CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc----------------cCCce-
Confidence            4679999998776532   447899999999999999999999999999999999973                33455 


Q ss_pred             eecCCCCc-cc------------------------cccCcccChHHHHHhcC-C-CC-CccHHHH----HHHHHhhccC-
Q 024225          155 LPMDGFHL-YL------------------------SQLDAMEDPKEAHARRG-A-PW-TFNPLLL----LNCLKNLRNQ-  201 (270)
Q Consensus       155 i~~dg~~~-~~------------------------~~l~~~~~~~~~~~~~g-~-~~-~~~~~~~----~~~l~~l~~~-  201 (270)
                      |.++|.+. .+                        .+++..+|.-....... + .+ -.+....    .++++.+..- 
T Consensus       315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~  394 (501)
T COG3845         315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA  394 (501)
T ss_pred             EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence            55555543 10                        01111111111110000 0 00 0122222    2333333322 


Q ss_pred             --CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccchh
Q 024225          202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETYF  265 (270)
Q Consensus       202 --~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~~  265 (270)
                        .......||||..|++..++.+...|++||+..|+-++|-...+.+.+.+.       -.+.|+.+.|+.+
T Consensus       395 ~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil  467 (501)
T COG3845         395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEIL  467 (501)
T ss_pred             CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHH
Confidence              234456999999999999999999999999999999999866666655554       2367777776654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.09  E-value=1.2e-10  Score=99.35  Aligned_cols=125  Identities=14%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~  175 (270)
                      +..|++++++.|++++|.||||+||||+++.|+++.-                      ..+-|.+.+     +.     
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~G~~vp-----a~-----   65 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI----------------------MAQIGCFVP-----AE-----   65 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------------HHHcCCCcc-----hh-----
Confidence            5699999999999999999999999999999998762                      111122211     00     


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh-----hHHHHH
Q 024225          176 AHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS  248 (270)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~-----~~~~l~  248 (270)
                       ...+.        .+.+++..+....  ......|+.++++. ......+.+++++++||++.+.|+.     .+.-+.
T Consensus        66 -~~~l~--------~~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~  135 (204)
T cd03282          66 -YATLP--------IFNRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE  135 (204)
T ss_pred             -hcCcc--------ChhheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence             00000        0111122222222  12334678888754 4445566789999999999999874     233333


Q ss_pred             Hhhc---cceEEecccc
Q 024225          249 SMFD---EKCYATSFKE  262 (270)
Q Consensus       249 ~~~~---~~i~v~~~~~  262 (270)
                      .+.+   ..+++||+.+
T Consensus       136 ~l~~~~~~~i~~TH~~~  152 (204)
T cd03282         136 CLIKKESTVFFATHFRD  152 (204)
T ss_pred             HHHhcCCEEEEECChHH
Confidence            3332   3366666654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.07  E-value=1e-10  Score=99.46  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++++..|++++|.||||||||||++.|++..
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence            346667789999999999999999999999654

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.06  E-value=1.6e-10  Score=107.03  Aligned_cols=151  Identities=18%  Similarity=0.165  Sum_probs=86.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe-ecCCCCcc-------ccccCcccChHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-PMDGFHLY-------LSQLDAMEDPKE  175 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i-~~dg~~~~-------~~~l~~~~~~~~  175 (270)
                      ..+|.++||+|+||-||||.+|+|+|.+.   |.-|..-+    +|.--.++ .+.|..+.       ..++.+...+++
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY  169 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY  169 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence            56799999999999999999999999995   55553111    11100000 00010000       000111111111


Q ss_pred             ---HHHh-cC----CCCCccH-HHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh--
Q 024225          176 ---AHAR-RG----APWTFNP-LLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--  242 (270)
Q Consensus       176 ---~~~~-~g----~~~~~~~-~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~--  242 (270)
                         +-+. .|    +....|. -.+.++.+.+.+.  .+..+..+|||+-||++++.++..++++.+.|||...||-.  
T Consensus       170 Vd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qR  249 (591)
T COG1245         170 VDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR  249 (591)
T ss_pred             HHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHH
Confidence               0000 00    0000000 1123444545444  25567899999999999999999999999999999999963  


Q ss_pred             --hHHHHHHhhc---cceEEeccc
Q 024225          243 --VWKDVSSMFD---EKCYATSFK  261 (270)
Q Consensus       243 --~~~~l~~~~~---~~i~v~~~~  261 (270)
                        ..+.++++..   ..+.|.||.
T Consensus       250 l~~ar~Irel~~~~k~ViVVEHDL  273 (591)
T COG1245         250 LNAARVIRELAEDGKYVIVVEHDL  273 (591)
T ss_pred             HHHHHHHHHHhccCCeEEEEechH
Confidence              3334455554   446677765

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.06  E-value=2e-10  Score=96.03  Aligned_cols=54  Identities=19%  Similarity=0.075  Sum_probs=43.2

Q ss_pred             CCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225          208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK  261 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~  261 (270)
                      .+|+|+++++.++.++.    .+++++|+|||...+|....+.+.+++..       .|+++|+.
T Consensus        94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~  158 (178)
T cd03239          94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK  158 (178)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            39999999999998874    58999999999999998766666666542       36666665

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK06547 hypothetical protein; Provisional

Probab=99.05  E-value=8.4e-10  Score=91.71  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=76.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      -....+|+|.|++|||||||++.|+..+.                   ..++.+|+++.....++               
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~~~~~---------------   57 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGWHGLA---------------   57 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceecccccCC---------------
Confidence            45567999999999999999999998862                   22477787753211110               


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEe
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYAT  258 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~  258 (270)
                        .....+.+.+..  .+.....+ |+.....+... . ....++++|+||.+.+.+     .++++++     .+|||+
T Consensus        58 --~~~~~l~~~~l~--~g~~~~~~-yd~~~~~~~~~-~-~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld  125 (172)
T PRK06547         58 --AASEHVAEAVLD--EGRPGRWR-WDWANNRPGDW-V-SVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLD  125 (172)
T ss_pred             --hHHHHHHHHHHh--CCCCceec-CCCCCCCCCCc-E-EeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEE
Confidence              011222222222  33333333 55554433221 1 223467999999988865     5788888     899999


Q ss_pred             ccccchhhccC
Q 024225          259 SFKETYFNREA  269 (270)
Q Consensus       259 ~~~~~~~~r~~  269 (270)
                      ++.++++.|+.
T Consensus       126 ~~~~vr~~R~~  136 (172)
T PRK06547        126 GPEALRKERAL  136 (172)
T ss_pred             CCHHHHHHHHH
Confidence            99999998863

>COG4240 Predicted kinase [General function prediction only]

Probab=99.03  E-value=5.6e-10  Score=95.02  Aligned_cols=126  Identities=29%  Similarity=0.453  Sum_probs=96.8

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccccC-cccChHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLD-AMEDPKEAHAR  179 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~l~-~~~~~~~~~~~  179 (270)
                      ++..+.-|+||.||-||||||+.-.|..++.    .          +. .+....++|++++...+.- ..++...+..-
T Consensus        45 qe~grPli~gisGpQGSGKStls~~i~~~L~----~----------kg~ert~~lSLDDlYlthadrl~La~q~npllq~  110 (300)
T COG4240          45 QERGRPLIVGISGPQGSGKSTLSALIVRLLA----A----------KGLERTATLSLDDLYLTHADRLRLARQVNPLLQT  110 (300)
T ss_pred             hhcCCceEEEeecCCCCchhhHHHHHHHHHH----H----------hcccceEEeehhhhhcchHHHHHHHHhcCchhcc
Confidence            3456789999999999999999999999884    1          22 2334489999987642211 11222234456


Q ss_pred             cCCCCCccHHHHHHHHHhhccCC-CcCCCCCCc----ccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225          180 RGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       180 ~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~----g~~~rv~~~~~l~~~~~ilIld~~~~~lDe  241 (270)
                      +|.+.++|....+++++.+..+. .+.+|.|+.    |..+|......+..+.+++|+||.+++..+
T Consensus       111 RGlpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP  177 (300)
T COG4240         111 RGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP  177 (300)
T ss_pred             cCCCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence            78999999999999999998775 568899987    999998877777778999999999988765

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.01  E-value=7.1e-10  Score=91.10  Aligned_cols=54  Identities=15%  Similarity=0.082  Sum_probs=41.3

Q ss_pred             CCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          209 FDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       209 ~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +|+|+++++.++.++..    .++++++|||...+|+.....+.+.+.       ..|+++|+.+
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~  142 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE  142 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            89999999999988865    679999999999999965555544443       2256666554

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.99  E-value=2.5e-09  Score=91.89  Aligned_cols=59  Identities=14%  Similarity=-0.073  Sum_probs=43.4

Q ss_pred             CcCCCCCCcccCChhhhhhhh----ccCCcEEEEeCCCCCCChhhHHHHHHhhc----c-----ceEEeccc
Q 024225          203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E-----KCYATSFK  261 (270)
Q Consensus       203 ~~~~~~~S~g~~~rv~~~~~l----~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~-----~i~v~~~~  261 (270)
                      ...+..+|+||+|++..+..+    ..+++++++|||+..+|+.....+.+++.    .     .|+++++.
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~  192 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL  192 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh
Confidence            345569999999987765433    46899999999999999976666555542    2     27777764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.97  E-value=3.6e-10  Score=97.67  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=67.9

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~  175 (270)
                      +..|+++++.++++++|.||||+||||+++.|+-..                      +..+-|.+.+     +..    
T Consensus        19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~g~~vp-----a~~----   67 (222)
T cd03285          19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV----------------------LMAQIGCFVP-----CDS----   67 (222)
T ss_pred             EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH----------------------HHHHhCCCcC-----ccc----
Confidence            458999999999999999999999999999988542                      0111121111     000    


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh--ccCCcEEEEeCC---CCCCChh
Q 024225          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG  242 (270)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l--~~~~~ilIld~~---~~~lDe~  242 (270)
                        ...+        .+.+++..+...... ...+|.+++++...+..+  ..++.++|+|||   +..+|..
T Consensus        68 --~~~~--------~~~~il~~~~l~d~~-~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~  128 (222)
T cd03285          68 --ADIP--------IVDCILARVGASDSQ-LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGF  128 (222)
T ss_pred             --EEEe--------ccceeEeeeccccch-hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHH
Confidence              0000        011112222222222 356788888888887777  678999999999   7778874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.95  E-value=4.7e-09  Score=107.78  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=108.1

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc-cCCCCC----CCCCceEEeecCCCCccccccC
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV----KPPDVATVLPMDGFHLYLSQLD  168 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~-~~~~~~----~~p~~g~~i~~dg~~~~~~~l~  168 (270)
                      +..++|++.-+++|+.+-++||.|||||||++.|+|-+.++....|+ ..+++.    +++....++..++.|...  ++
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~--lT  205 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE--LT  205 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce--eE
Confidence            56789999999999999999999999999999999998765555665 344431    122222335555555544  88


Q ss_pred             cccChHHHHHhcCCCCCcc----HHHH----HHHHHhhccC-------CCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          169 AMEDPKEAHARRGAPWTFN----PLLL----LNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       169 ~~~~~~~~~~~~g~~~~~~----~~~~----~~~l~~l~~~-------~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      +.+-.++..+-.+...-.+    .+..    ..+++-+++.       .+...+-.|||+++|+..+..+..+++++..|
T Consensus       206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D  285 (1391)
T KOG0065|consen  206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD  285 (1391)
T ss_pred             EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence            8888887776665411111    1111    2345555543       23345688999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHH
Q 024225          234 GNYLFLDGGVWKDVS  248 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~  248 (270)
                      ++.-+||....-++.
T Consensus       286 e~t~GLDSsTal~ii  300 (1391)
T KOG0065|consen  286 EITRGLDSSTAFQII  300 (1391)
T ss_pred             cccccccHHHHHHHH
Confidence            999999984433333

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.92  E-value=8.5e-10  Score=84.22  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             ccccccceecCCCeEEEEECCCCCCHHHHHHHHH
Q 024225           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (270)
Q Consensus        95 ~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~  128 (270)
                      .+|++++|++++|++++|+||||||||||++++.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            3789999999999999999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.91  E-value=6.7e-10  Score=104.48  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=42.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL  164 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~  164 (270)
                      +|++||+++++||+++|+||||||||||++  +|++                .|+.|..|.+||.++..
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~----------------~~~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR----------------KFSEGYEFFLDATHSFS   71 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC----------------CCCCCCEEEECCEECCC
Confidence            789999999999999999999999999999  5665                45555337888877654

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK08233 hypothetical protein; Provisional

Probab=98.89  E-value=7.7e-09  Score=85.76  Aligned_cols=113  Identities=19%  Similarity=0.294  Sum_probs=67.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC-CC
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PW  184 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~  184 (270)
                      ++.+|+|.|++|||||||++.|+..+.               .   ..++.+|++.....  +  ........ .+. ..
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~---------------~---~~~~~~d~~~~~~~--~--~~~~~~~~-~~~~~~   58 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK---------------N---SKALYFDRYDFDNC--P--EDICKWID-KGANYS   58 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC---------------C---CceEEECCEEcccC--c--hhhhhhhh-ccCChh
Confidence            368999999999999999999999872               1   13466777643211  0  00000000 111 11


Q ss_pred             CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY  264 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~  264 (270)
                      ..+...+.+.++.+...                       ...+++|+|+++....    ..+.+.++..||++++.+++
T Consensus        59 ~~~~~~~~~~l~~~~~~-----------------------~~~~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~  111 (182)
T PRK08233         59 EWVLTPLIKDIQELIAK-----------------------SNVDYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIA  111 (182)
T ss_pred             hhhhHHHHHHHHHHHcC-----------------------CCceEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHH
Confidence            12222222222222111                       0136788999887666    36778889999999999988


Q ss_pred             hhcc
Q 024225          265 FNRE  268 (270)
Q Consensus       265 ~~r~  268 (270)
                      +.|+
T Consensus       112 ~~R~  115 (182)
T PRK08233        112 MARR  115 (182)
T ss_pred             HHHH
Confidence            7763

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.86  E-value=2.6e-09  Score=98.33  Aligned_cols=137  Identities=17%  Similarity=0.260  Sum_probs=83.0

Q ss_pred             cccceecCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCc-cc
Q 024225           98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA-ME  171 (270)
Q Consensus        98 ~~isl~i~~g-----eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~-~~  171 (270)
                      .+..+.|..|     |++..+|+||-|||||+++++|.++   |+.|.             -++.-+..+....+.. .+
T Consensus       353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~-------------e~p~lnVSykpqkispK~~  416 (592)
T KOG0063|consen  353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGG-------------EIPVLNVSYKPQKISPKRE  416 (592)
T ss_pred             eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccC-------------cccccceeccccccCcccc
Confidence            4445555554     6889999999999999999999884   44432             1222222211111111 01


Q ss_pred             Ch--HHHHHhcCCCCCc-cHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHH
Q 024225          172 DP--KEAHARRGAPWTF-NPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD  246 (270)
Q Consensus       172 ~~--~~~~~~~g~~~~~-~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~  246 (270)
                      ..  ...+...  ..++ +.....++++.|...  .+.....+|||+.||++++..+..++++.++|||.+.+|.+.+..
T Consensus       417 ~tvR~ll~~kI--r~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~  494 (592)
T KOG0063|consen  417 GTVRQLLHTKI--RDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRII  494 (592)
T ss_pred             chHHHHHHHHh--HhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHH
Confidence            00  1111111  1111 222234455554443  234556899999999999999999999999999999999865555


Q ss_pred             HHHhhc
Q 024225          247 VSSMFD  252 (270)
Q Consensus       247 l~~~~~  252 (270)
                      ....++
T Consensus       495 Askvik  500 (592)
T KOG0063|consen  495 ASKVIK  500 (592)
T ss_pred             HHHHHH
Confidence            444444

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.2e-08  Score=94.40  Aligned_cols=165  Identities=16%  Similarity=0.095  Sum_probs=95.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      |.++|.+....+..    .+.+.++.|-.|..+||+||||-|||||++.|+-.--.             .+|..-. +..
T Consensus       265 IKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-------------IPpnIDv-LlC  326 (807)
T KOG0066|consen  265 IKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-------------IPPNIDV-LLC  326 (807)
T ss_pred             ceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-------------CCCCCce-Eee
Confidence            66677666654422    56889999999999999999999999999999876311             1333322 222


Q ss_pred             CCCCccccccCcc-----------cChHHHHHhcCCC---CC-------------------ccHHHHHHHHHhhccCC--
Q 024225          158 DGFHLYLSQLDAM-----------EDPKEAHARRGAP---WT-------------------FNPLLLLNCLKNLRNQG--  202 (270)
Q Consensus       158 dg~~~~~~~l~~~-----------~~~~~~~~~~g~~---~~-------------------~~~~~~~~~l~~l~~~~--  202 (270)
                      ......+ ..++.           ...+...+..+-.   ..                   ....+...++..|++..  
T Consensus       327 EQEvvad-~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM  405 (807)
T KOG0066|consen  327 EQEVVAD-STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM  405 (807)
T ss_pred             eeeeeec-CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH
Confidence            1111100 00100           0000000000100   00                   01122233444444432  


Q ss_pred             -CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh--hhH--HHHHHhhccceEEeccc
Q 024225          203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--GVW--KDVSSMFDEKCYATSFK  261 (270)
Q Consensus       203 -~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe--~~~--~~l~~~~~~~i~v~~~~  261 (270)
                       +...-.||||=+-|+.+++++-+.|-+|++|+|+..||-  .+|  ..+...-+..+.|+||.
T Consensus       406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ  469 (807)
T KOG0066|consen  406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ  469 (807)
T ss_pred             hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence             233448999999999999999999999999999888874  222  23333334556667765

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.81  E-value=8.1e-09  Score=92.06  Aligned_cols=55  Identities=16%  Similarity=0.034  Sum_probs=44.1

Q ss_pred             CCCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      .+|+|+++|+.++.++..    .++++++|||+..+|......+.+++..      .|+++|+.+
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~  234 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ  234 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence            489999999999975433    8999999999999999888877776652      367777653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.75  E-value=5.9e-09  Score=89.77  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..|+++++++ ++++|.|||||||||++|.|++..
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            45889999876 999999999999999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.69  E-value=1.8e-08  Score=89.52  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=33.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL  162 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~  162 (270)
                      .-++|+||||||||||++.|+|++                .|..|. +.++|..+
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~----------------~~~~G~-i~~~g~~v  149 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARIL----------------STGISQ-LGLRGKKV  149 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCcc----------------CCCCce-EEECCEEe
Confidence            678999999999999999999999                677888 88888754

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.64  E-value=6.8e-08  Score=83.48  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=33.0

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +..|+++.+.+|++++|.||||+||||+++.|++.
T Consensus        20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~   54 (222)
T cd03287          20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALI   54 (222)
T ss_pred             EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999999999999999994

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=98.63  E-value=3.4e-08  Score=99.34  Aligned_cols=109  Identities=13%  Similarity=0.087  Sum_probs=65.5

Q ss_pred             cceecCCC-eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHH
Q 024225          100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (270)
Q Consensus       100 isl~i~~g-eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~  178 (270)
                      +++++..+ ++++|.||||+|||||+|.|++..-               .+..|..++......    +....   ....
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---------------~aq~G~~Vpa~~~~~----~~~~d---~i~~  371 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---------------MFQSGIPIPANEHSE----IPYFE---EIFA  371 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---------------HHHhCCCccCCcccc----ccchh---heee
Confidence            67888877 9999999999999999999999831               122222122211000    00000   0000


Q ss_pred             hcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHH
Q 024225          179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (270)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l  247 (270)
                      .++     +.   .++.        .....||.++++...+...+ ..+.++|+||+..++|+.....+
T Consensus       372 ~i~-----~~---~si~--------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~al  423 (771)
T TIGR01069       372 DIG-----DE---QSIE--------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSAL  423 (771)
T ss_pred             ecC-----hH---hHHh--------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHH
Confidence            011     00   1111        12346888888877765544 57899999999999998655544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.62  E-value=1.4e-07  Score=101.02  Aligned_cols=73  Identities=11%  Similarity=-0.042  Sum_probs=55.6

Q ss_pred             HHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEE
Q 024225          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYA  257 (270)
Q Consensus       191 ~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v  257 (270)
                      .+++++.+++|   .....+.+|||+.||+-++..+...   +.+.|+|||+.+|+..-.+.+.+.++       ..|.|
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            35566666665   2345679999999999999988654   57999999999999876666666655       44888


Q ss_pred             eccccc
Q 024225          258 TSFKET  263 (270)
Q Consensus       258 ~~~~~~  263 (270)
                      +|+.|.
T Consensus      1759 eH~~~~ 1764 (1809)
T PRK00635       1759 DHDPAL 1764 (1809)
T ss_pred             eCCHHH
Confidence            887754

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.59  E-value=7.2e-08  Score=82.82  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=25.7

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+.+.-..+.+++|.||||+|||||+|.|+..
T Consensus        20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~   52 (213)
T cd03281          20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVALI   52 (213)
T ss_pred             ceEEecCCCceEEEEECCCCCChHHHHHHHHHH
Confidence            455544333489999999999999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.52  E-value=4.6e-07  Score=80.53  Aligned_cols=54  Identities=13%  Similarity=0.103  Sum_probs=43.5

Q ss_pred             CCCcccCChhhhhhhhc---------cCCcEEEEeCCCCCCChhhHHHHHHhhcc--ceEEeccc
Q 024225          208 SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--KCYATSFK  261 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~---------~~~~ilIld~~~~~lDe~~~~~l~~~~~~--~i~v~~~~  261 (270)
                      .+|.|+++++.++.+++         ..++++++|||+..+|+..++.+.+.+..  .+++++..
T Consensus       183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~  247 (270)
T cd03242         183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTD  247 (270)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCC
Confidence            46999999999998764         58899999999999999988888888852  34444443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.50  E-value=3.6e-07  Score=76.61  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=83.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN  187 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~  187 (270)
                      -+|||.|-+-||||||++.|.....                .  +.+|.+|+|+....+.....+   ......+..+.+
T Consensus         5 ~ivgiSG~TnsGKTTLak~l~~~f~----------------~--~~lIhqDDFyKp~~Ei~v~~~---n~~~wd~~esLd   63 (225)
T KOG3308|consen    5 LIVGISGCTNSGKTTLAKSLHRFFP----------------G--CSLIHQDDFYKPENEIEVDYN---NIDNWDLLESLD   63 (225)
T ss_pred             EEEEeecccCCCHhHHHHHHHHHcc----------------C--CeeeccccccCchhhhhcccC---Ccchhcchhhhh
Confidence            4899999999999999999999983                2  457999999877655544332   112333344445


Q ss_pred             HHHHHHHHHhhccCCCcC--CC-------CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEe
Q 024225          188 PLLLLNCLKNLRNQGSVY--AP-------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYAT  258 (270)
Q Consensus       188 ~~~~~~~l~~l~~~~~~~--~~-------~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~  258 (270)
                      ...+++.+..........  .+       .|.+.-++.    ..-..+..++|+||-.+..-+    .+.++++..|+++
T Consensus        64 m~~fl~~ia~~l~~~~~~~~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~----p~~~~~d~~im~~  135 (225)
T KOG3308|consen   64 MEKFLEKIATWLDSRHNAPEAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYK----PQVDLFDRIIMLT  135 (225)
T ss_pred             HHHHHHHHHHHhcCccccchHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecc----hhhhhhhhheeee
Confidence            555544443322221111  00       111111111    112235779999998888874    6677899999999


Q ss_pred             ccccchhhccC
Q 024225          259 SFKETYFNREA  269 (270)
Q Consensus       259 ~~~~~~~~r~~  269 (270)
                      ++.++...||.
T Consensus       136 ~~y~~~krRr~  146 (225)
T KOG3308|consen  136 LDYETCKRRRE  146 (225)
T ss_pred             ccHHHHHHhhc
Confidence            99998888874

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.48  E-value=1.2e-07  Score=79.69  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      =+.+.++.|+.++|+||||||||||++.|++++.   ++.|.
T Consensus        17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~   55 (186)
T cd01130          17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI   55 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence            3456688999999999999999999999999984   44444

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.48  E-value=1.4e-06  Score=86.19  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=44.1

Q ss_pred             CCCCCcccCChhhhhhhhccCC---cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          206 APSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       206 ~~~~S~g~~~rv~~~~~l~~~~---~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ...+|||+.||+-++..+....   -+.|+|||+-+|-..-.+++.+.++       ..|.|.|+.|+
T Consensus       820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdV  887 (935)
T COG0178         820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDV  887 (935)
T ss_pred             cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccce
Confidence            4589999999999998886655   6999999999997644444444444       44778887764

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.47  E-value=3e-08  Score=83.21  Aligned_cols=37  Identities=8%  Similarity=-0.044  Sum_probs=25.4

Q ss_pred             CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhh
Q 024225          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (270)
Q Consensus       206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~  243 (270)
                      ...|+.++++. ........+++++++||++..+|+..
T Consensus        59 ~s~fs~~~~~l-~~~l~~~~~~~llllDEp~~g~d~~~   95 (185)
T smart00534       59 LSTFMVEMKET-ANILKNATENSLVLLDELGRGTSTYD   95 (185)
T ss_pred             ccHHHHHHHHH-HHHHHhCCCCeEEEEecCCCCCCHHH
Confidence            34666666653 33333334789999999999999863

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.47  E-value=2e-07  Score=79.95  Aligned_cols=46  Identities=17%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             CCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          207 PSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       207 ~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ..+|+||+..++++..++    .+.+++|+|++...||+..+..+.+++.
T Consensus       135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~  184 (220)
T PF02463_consen  135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLK  184 (220)
T ss_dssp             TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            389999999999885543    2677999999999999988888777776

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.46  E-value=3.7e-07  Score=79.33  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=33.9

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHH-HHHHHHHhc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRIN  132 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTL-lk~L~gll~  132 (270)
                      +.+.++.+.+++             .+++|+++.|.|+|||||||| ++.+.+.++
T Consensus         8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~   50 (230)
T PRK08533          8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ   50 (230)
T ss_pred             EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            456677776654             168899999999999999999 588998873

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.42  E-value=4.2e-07  Score=76.20  Aligned_cols=25  Identities=36%  Similarity=0.631  Sum_probs=23.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |++++|+||||||||||+++|++.+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999999987

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.42  E-value=7.8e-07  Score=84.79  Aligned_cols=73  Identities=21%  Similarity=0.313  Sum_probs=51.1

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~  173 (270)
                      +.++.+.++.+++|.+++|+||||+||||++..|++.+.   ...|         .....++..|.+.     ..+.+..
T Consensus       243 l~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G---------~~kV~LI~~Dt~R-----igA~EQL  305 (484)
T PRK06995        243 LPVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG---------ASKVALLTTDSYR-----IGGHEQL  305 (484)
T ss_pred             HhhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC---------CCeEEEEeCCccc-----hhHHHHH
Confidence            334566777788999999999999999999999999873   1111         1133457777653     4455666


Q ss_pred             HHHHHhcCCC
Q 024225          174 KEAHARRGAP  183 (270)
Q Consensus       174 ~~~~~~~g~~  183 (270)
                      ......+|++
T Consensus       306 r~~AeilGVp  315 (484)
T PRK06995        306 RIYGKILGVP  315 (484)
T ss_pred             HHHHHHhCCC
Confidence            6666777764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.42  E-value=3.7e-07  Score=62.64  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             ccccceecCC-CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        97 l~~isl~i~~-geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++..+++.+ |.++.|.|+|||||||++..|.-++
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3556677765 5799999999999999999999887

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.37  E-value=1.4e-06  Score=81.74  Aligned_cols=95  Identities=21%  Similarity=0.265  Sum_probs=58.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      +++|++++|+||||+||||+++.|++....   .         ..+..+.++..|++.+     ...+........+|++
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~---~---------~~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp  250 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVI---R---------HGADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS  250 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHH---h---------cCCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence            578999999999999999999999986410   0         0234556688888753     3334444556677775


Q ss_pred             CC--ccHHHHHHHHHhhccCCCcCCCCCCcccCChh
Q 024225          184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV  217 (270)
Q Consensus       184 ~~--~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv  217 (270)
                      ..  .+...+...+..+.....+.+..  .|+.++.
T Consensus       251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd  284 (420)
T PRK14721        251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD  284 (420)
T ss_pred             eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence            32  23333444455554443344333  3666653

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.34  E-value=4.6e-07  Score=85.42  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=45.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.++.+++++.|...   +.+++.++ .+.+|++++|+||||||||||+++|+++.
T Consensus       137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~  189 (450)
T PRK06002        137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD  189 (450)
T ss_pred             CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467888999999753   44667775 89999999999999999999999999987

>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]

Probab=98.32  E-value=6e-07  Score=85.52  Aligned_cols=150  Identities=25%  Similarity=0.361  Sum_probs=107.7

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHH---h
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---R  179 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~---~  179 (270)
                      +....-++|+.|.++|||||.+..+...+.+.+.       .+  .+.....+..|-++.   .++. ++......   .
T Consensus        40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~-------~~--~~~~v~~ls~~~fY~---~lt~-~~~~~a~~~~~~  106 (473)
T KOG4203|consen   40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIER-------DG--RQPQVVLLSQDSFYK---VLTS-EELAKAQEGKYN  106 (473)
T ss_pred             cCcceEEEEeecCcccCceeehHHHHHHhhhhhh-------cc--CCCeEEEeecHHHHH---hhch-HHHHHhhhcccc
Confidence            3567789999999999999988888777732221       11  232333244432221   1222 22222221   2


Q ss_pred             cCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225          180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS  259 (270)
Q Consensus       180 ~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~  259 (270)
                      +..+..++.+.....++++..+..+.+|.|++-..++......+...++++++++.+.+.|    ++++++++.++|+|+
T Consensus       107 f~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~  182 (473)
T KOG4203|consen  107 FDHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDT  182 (473)
T ss_pred             ccCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEec
Confidence            3336778888888889999999999999999888787666555667889999999999999    599999999999999


Q ss_pred             cccchhhccC
Q 024225          260 FKETYFNREA  269 (270)
Q Consensus       260 ~~~~~~~r~~  269 (270)
                      +.|.++.|++
T Consensus       183 ~~d~rla~ri  192 (473)
T KOG4203|consen  183 DADVRLARRI  192 (473)
T ss_pred             CcchhhHHHH
Confidence            9999998875

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.32  E-value=2.1e-06  Score=71.60  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=25.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|++++|+|+||||||||+++|++++
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l   27 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALF   27 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999998

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.29  E-value=1.9e-06  Score=60.48  Aligned_cols=23  Identities=35%  Similarity=0.728  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|.|++||||||+++.|...+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999885

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=98.29  E-value=1.5e-06  Score=73.04  Aligned_cols=124  Identities=27%  Similarity=0.383  Sum_probs=80.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccC-cc-cCh-HHHHHhcCCC
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD-AM-EDP-KEAHARRGAP  183 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~-~~-~~~-~~~~~~~g~~  183 (270)
                      +-++|+.||.|||||||.-.|---+.+   .-|       ..-.++. +++|++++....-- .. .++ ..+.+.+|.+
T Consensus        31 Pl~igfSgPQGsGKstl~~ald~~lt~---Ky~-------~E~s~~~-~SvDDFYLThe~Q~eL~k~npnN~Llq~RGla   99 (282)
T KOG2878|consen   31 PLVIGFSGPQGSGKSTLVFALDYKLTK---KYI-------QEYSSAT-ISVDDFYLTHEGQAELRKKNPNNALLQYRGLA   99 (282)
T ss_pred             cEEEEecCCCCCCceeehhhhHHHHHH---Hhc-------cccceEE-EEecceeeechhHHHHHhhCCCChhhccCCCC
Confidence            469999999999999998776554420   000       0224455 99999986532110 00 011 1234567888


Q ss_pred             CCccHHHHHHHHHhhccC----CCcCCCCCC----cccCChhhhhhhhcc-CCcEEEEeCCCCCCCh
Q 024225          184 WTFNPLLLLNCLKNLRNQ----GSVYAPSFD----HGVGDPVEDDILVGL-QHKVVIVDGNYLFLDG  241 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~----~~~~~~~~S----~g~~~rv~~~~~l~~-~~~ilIld~~~~~lDe  241 (270)
                      .+.|.....++++.+...    ..+.+|.|+    +|.++|......... +..++|+||.+++..+
T Consensus       100 GtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~P  166 (282)
T KOG2878|consen  100 GTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKP  166 (282)
T ss_pred             CcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccc
Confidence            888988888887766543    346778775    467777776655443 5779999999998765

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.28  E-value=1.8e-06  Score=82.96  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..++|+.+.+ +|.+++|.|||||||||+++.|+..+
T Consensus       272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l  308 (512)
T PRK13477        272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL  308 (512)
T ss_pred             eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34679999987 88999999999999999999999987

>TIGR00767 rho transcription termination factor Rho

Probab=98.26  E-value=8.2e-07  Score=82.44  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=46.8

Q ss_pred             eEEeccchhhhhhhhccccccc-----------ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~-----------~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+.++||++.|++.  + .+|+           |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus       130 ri~Fe~LTf~YP~e--r-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNE--R-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCc--c-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            48999999999863  2 2565           9999999999999999999999999999999874

Members of this family differ in the specificity of RNA binding.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.25  E-value=2e-06  Score=74.20  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +-.|++|++++|++++|.||||+||||+++.+++..
T Consensus        19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            348999999999999999999999999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.21  E-value=9.7e-07  Score=83.08  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=35.6

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.+++++ |++.+|++++|+|+||+|||||+++|+|+.+
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~  180 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ  180 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence            5688999 9999999999999999999999999999873

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.19  E-value=9.9e-07  Score=75.37  Aligned_cols=42  Identities=7%  Similarity=-0.057  Sum_probs=35.8

Q ss_pred             cCChhhhhhhhccCCcEEEEeCCC-----CCCChhhHHHHHHhhccc
Q 024225          213 VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK  254 (270)
Q Consensus       213 ~~~rv~~~~~l~~~~~ilIld~~~-----~~lDe~~~~~l~~~~~~~  254 (270)
                      +..+..++..+..+++++++|||+     ..+|+...+.+.+++...
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            445577788888899999999999     999999888888888754

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.16  E-value=1.1e-06  Score=88.71  Aligned_cols=42  Identities=12%  Similarity=-0.081  Sum_probs=32.9

Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHH
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l  247 (270)
                      ....||.+++++..+...+ ..+.++++||++.+.|+.....+
T Consensus       387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~al  428 (782)
T PRK00409        387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAAL  428 (782)
T ss_pred             chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHH
Confidence            3457889999988877666 57889999999999998544433

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.15  E-value=2.6e-06  Score=80.13  Aligned_cols=129  Identities=15%  Similarity=0.156  Sum_probs=80.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++-+.+++.|...   +.+++. .+.+.+|+.++|+|+||+|||||+++|++..                .++.+. +.
T Consensus       130 ~~~r~~i~~~l~TG---iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~----------------~~~~gv-I~  188 (432)
T PRK06793        130 AFEREEITDVFETG---IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA----------------KADINV-IS  188 (432)
T ss_pred             chheechhhccCCC---CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccC----------------CCCeEE-EE
Confidence            45566777777542   346676 5999999999999999999999999999987                566665 55


Q ss_pred             cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhc-------cC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG-------LQ  226 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~-------~~  226 (270)
                      ..|..-       .+-.++.....+               .-++..   -......|.+++.+++......       .+
T Consensus       189 ~iGerg-------~ev~e~~~~~l~---------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~  246 (432)
T PRK06793        189 LVGERG-------REVKDFIRKELG---------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGN  246 (432)
T ss_pred             eCCCCc-------ccHHHHHHHHhh---------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            555421       111111111111               000000   0223455677777777664332       35


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHh
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSM  250 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~  250 (270)
                      +-++++|.++-++|.  .+++...
T Consensus       247 ~VLlilDslTr~a~A--~reisl~  268 (432)
T PRK06793        247 NVLLMMDSVTRFADA--RRSVDIA  268 (432)
T ss_pred             cEEEEecchHHHHHH--HHHHHHH
Confidence            668999999999985  3444433

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.15  E-value=1.5e-05  Score=70.07  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      |.=+.+.+|+.++|+||+|+|||||++.|...+.
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            3446789999999999999999999999999874

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.14  E-value=2.2e-06  Score=77.94  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=35.0

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus        57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~   94 (326)
T cd01136          57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT   94 (326)
T ss_pred             cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence            4477888 9999999999999999999999999999883

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.12  E-value=2.2e-06  Score=72.69  Aligned_cols=27  Identities=41%  Similarity=0.614  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|++++|+||||||||||++.|++.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999986

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.12  E-value=2.1e-06  Score=80.88  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.++.+.++..|...   +.+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus       128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~  180 (433)
T PRK07594        128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180 (433)
T ss_pred             CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC
Confidence            346667777777532   4578999 9999999999999999999999999999873

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.11  E-value=1.4e-05  Score=61.67  Aligned_cols=27  Identities=37%  Similarity=0.759  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+..+.|.||+|+||||+++.|+..+.
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence            367899999999999999999999983

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.10  E-value=2.6e-06  Score=80.60  Aligned_cols=37  Identities=30%  Similarity=0.393  Sum_probs=34.7

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+++.
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~  182 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT  182 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            4477999 999999999999999999999999999987

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=4.9e-06  Score=83.02  Aligned_cols=90  Identities=23%  Similarity=0.289  Sum_probs=57.2

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~  173 (270)
                      +.++.+.++.+++|++++++||||+||||++..|++.+.   ...         ......++..|.+.     .-..+..
T Consensus       172 l~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~---------G~kkV~lit~Dt~R-----igA~eQL  234 (767)
T PRK14723        172 LPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---ARE---------GADQLALLTTDSFR-----IGALEQL  234 (767)
T ss_pred             hhhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHc---------CCCeEEEecCcccc-----hHHHHHH
Confidence            335577888888899999999999999999999999872   111         11234446666553     2233444


Q ss_pred             HHHHHhcCCCC--CccHHHHHHHHHhhcc
Q 024225          174 KEAHARRGAPW--TFNPLLLLNCLKNLRN  200 (270)
Q Consensus       174 ~~~~~~~g~~~--~~~~~~~~~~l~~l~~  200 (270)
                      .......|++.  ..+...+.+.++.+..
T Consensus       235 ~~~a~~~gvpv~~~~~~~~l~~al~~~~~  263 (767)
T PRK14723        235 RIYGRILGVPVHAVKDAADLRFALAALGD  263 (767)
T ss_pred             HHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence            44556677633  2345555566665553

>PRK08149 ATP synthase SpaL; Validated

Probab=98.10  E-value=2.6e-06  Score=80.05  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|+++.
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~  175 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS  175 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC
Confidence            4578999 999999999999999999999999999986

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.06  E-value=3.1e-05  Score=68.23  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=30.0

Q ss_pred             cccccceecCCCe-EEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~ge-ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++..+...++++. ++.|.||+|+|||||++.+...+
T Consensus        31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            4466666666655 89999999999999999999887

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.05  E-value=5.2e-05  Score=63.27  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=27.6

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..++|++++|.|++||||||+++.|.+.+.
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999983

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.04  E-value=3.9e-06  Score=69.63  Aligned_cols=25  Identities=36%  Similarity=0.594  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |++++|+||||||||||++.|++.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999999987

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08118 topology modulation protein; Reviewed

Probab=98.04  E-value=8.8e-06  Score=67.23  Aligned_cols=24  Identities=42%  Similarity=0.598  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .|.|+||+|||||||++.|+..++
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999873

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.02  E-value=3.1e-06  Score=81.25  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=45.8

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      +.|+++.|+...    +++++++.+..|+.++|+||||+|||||++.|.|++.   |.+|.
T Consensus       187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~  240 (506)
T PRK09862        187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE  240 (506)
T ss_pred             ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence            347788887644    6689999999999999999999999999999999995   55554

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.01  E-value=5.6e-06  Score=78.10  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=34.8

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|+++.
T Consensus       133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~  169 (422)
T TIGR02546       133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA  169 (422)
T ss_pred             ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence            4578999 999999999999999999999999999987

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.00  E-value=3.9e-06  Score=69.57  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=23.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |++++|+||||||||||++.|++.+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccC
Confidence            6899999999999999999999976

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.00  E-value=7.2e-06  Score=76.06  Aligned_cols=61  Identities=10%  Similarity=-0.002  Sum_probs=46.3

Q ss_pred             CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHH----HHHHhhc---cceEEeccccc
Q 024225          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD---EKCYATSFKET  263 (270)
Q Consensus       203 ~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~----~l~~~~~---~~i~v~~~~~~  263 (270)
                      +.....+|+|+.||.+++.+....+++-+.||+-.-||-..+-    .++.++.   +.|.|.||.++
T Consensus       208 ~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV  275 (592)
T KOG0063|consen  208 DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV  275 (592)
T ss_pred             HhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence            4556789999999999999998999999999999999953222    2333333   55777877743

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.99  E-value=4.9e-06  Score=75.42  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=30.1

Q ss_pred             cceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++.+..|+.++|+||+|||||||++.|++++
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~  168 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI  168 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence            56778999999999999999999999999998

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.98  E-value=6.6e-06  Score=77.70  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|++..
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~  187 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT  187 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5578999 999999999999999999999999999987

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.96  E-value=6.2e-06  Score=78.06  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|+++.
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~  187 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT  187 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5577888 999999999999999999999999999987

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.96  E-value=9.3e-06  Score=68.76  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=26.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -++|++++|+|+||||||||++.|.+.+
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3679999999999999999999999988

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.95  E-value=3.1e-06  Score=71.74  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ..++++|-|+++=.     .+...+|+.|||+++.++++.|.
T Consensus       107 ~~~vv~e~pll~E~-----~~~~~~D~ii~V~a~~e~r~~Rl  143 (195)
T PRK14730        107 NPIVVLVIPLLFEA-----KLTDLCSEIWVVDCSPEQQLQRL  143 (195)
T ss_pred             CCEEEEEeHHhcCc-----chHhCCCEEEEEECCHHHHHHHH
Confidence            46888998888743     56668999999999999988774

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.94  E-value=8.5e-06  Score=76.68  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++.+ +.+.+|++++|+|+||+|||||+++|++..
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~  186 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGT  186 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence            5566666 999999999999999999999999999876

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.93  E-value=1.2e-05  Score=73.17  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=26.3

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+|++++|+||||+||||++..|++.+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5799999999999999999999999983

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.93  E-value=8.6e-06  Score=62.88  Aligned_cols=23  Identities=52%  Similarity=0.999  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|.|++||||||+++.|+..+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999987

...

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.93  E-value=1.4e-05  Score=72.13  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=34.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++++++++..++++++|+|++|||||||+..|.+.+.
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5699999999999999999999999999999999874

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.92  E-value=9.7e-06  Score=76.17  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=34.5

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|++..
T Consensus       125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~  161 (413)
T TIGR03497       125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA  161 (413)
T ss_pred             ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578898 999999999999999999999999999987

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.92  E-value=3.6e-06  Score=70.18  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      .++++|.|+++-.     .+.+.+|..|||+++.++++.|.
T Consensus       104 ~~vive~plL~e~-----~~~~~~D~vv~V~a~~~~ri~Rl  139 (179)
T cd02022         104 KVVVLDIPLLFET-----GLEKLVDRVIVVDAPPEIQIERL  139 (179)
T ss_pred             CEEEEEehHhhcC-----CcHHhCCeEEEEECCHHHHHHHH
Confidence            6888998887664     45678999999999999998874

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK05922 type III secretion system ATPase; Validated

Probab=97.92  E-value=1.2e-05  Score=75.76  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++.+ +.+.+|+.++|+|+||+|||||+++|++..
T Consensus       145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~  181 (434)
T PRK05922        145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGS  181 (434)
T ss_pred             ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence            4466664 999999999999999999999999999987

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.91  E-value=1.4e-05  Score=66.17  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=26.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++|++++|+|++||||||+++.|++.+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999983

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.91  E-value=8.5e-06  Score=76.58  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.++ |.+|.+.+|++++|+|+||+|||||+++|+++.+
T Consensus       128 i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~  165 (418)
T TIGR03498       128 VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD  165 (418)
T ss_pred             cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence            3354 4699999999999999999999999999999873

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.88  E-value=3.9e-05  Score=68.20  Aligned_cols=53  Identities=21%  Similarity=0.339  Sum_probs=38.0

Q ss_pred             EEeccchhhhhhhhcccccccccceecC-------CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVN-------VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~-------~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +++.+.++.|+..-+.  +++++++.++       +|++++++|+||+||||+++.|++.+.
T Consensus        41 i~f~~~~~~~~~vl~~--v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~  100 (270)
T PRK06731         41 VKFENATMITEEVIEY--ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH  100 (270)
T ss_pred             EEecCCCccccHHHHH--HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5555555555432111  3477777765       458999999999999999999999873

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.88  E-value=1.1e-05  Score=67.21  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=28.7

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++++.+++.+| +.+|.||||+||||++.+|.-.+.
T Consensus         9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen    9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            346666777555 999999999999999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
3c8u_A	208	Crystal Structure Of Putative Fructose Transport Sy		5e-12
2ga8_A	359	Crystal Structure Of Yfh7 From Saccharomyces Cerevi		3e-10

>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           + +V L+G PG+GKSTL+  +           A++  +Q  P   A V+P DGFHL    
Sbjct: 22  RQLVALSGAPGSGKSTLSNPL-----------AAALSAQGLP---AEVVPXDGFHLD--- 64
Query: 167 LDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQ 226
            + + +P+    R+GAP TF              Q  V  P FD      +     VG +
Sbjct: 65  -NRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE 123
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFD 252
            +V I++GNYL  D   W+D+++++D
Sbjct: 124 CRVAIIEGNYLLFDAPGWRDLTAIWD 149

>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF                       
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	2e-47
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	7e-44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	3e-07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	1e-27
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	1e-25
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	1e-25
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	2e-18
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	3e-13
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	3e-13
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	4e-11
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	5e-11
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	3e-09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	4e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	4e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	6e-05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	7e-05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	2e-04

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score =  156 bits (395), Expect = 2e-47
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 20/171 (11%)

Query: 86  VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
              AL Q +L    L      + +V L+G PG+GKSTL+  +   ++             
Sbjct: 3   TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52

Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 205
                 A V+PMDGFHL    L+    P+    R+GAP TF+          L++Q  V 
Sbjct: 53  ------AEVVPMDGFHLDNRLLE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102

Query: 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
            P FD      +     VG + +V I++GNYL  D   W+D+++++D    
Sbjct: 103 YPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score =  151 bits (382), Expect = 7e-44
 Identities = 50/247 (20%), Positives = 83/247 (33%), Gaps = 40/247 (16%)

Query: 43  RRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALAS 102
                 +        +    +   +  ++  E+   +    D V D   Q   P    A 
Sbjct: 58  EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
             N +    +    G   +   A V   +N     + S         ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166

Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------------- 201
               LD  +DP+ AH RRG+P TF+    L   K L                        
Sbjct: 167 SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKL 226

Query: 202 --------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
                     ++ P F+H + DP  D   +    ++VI++G YL  D   WK +     +
Sbjct: 227 SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLAD 286

Query: 254 KCYATSF 260
                 +
Sbjct: 287 TGALLVY 293

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 87  YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
              LA  +L         N +  V L G PG+GKST+A E+ + IN+ +    S   + +
Sbjct: 4   THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63

Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
           +        V  +D    L  +++  M +
Sbjct: 64  EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score =  106 bits (267), Expect = 1e-27
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 26/180 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y +   R           N +    I+ +AG    GKST A  +   +++    +     
Sbjct: 57  YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     ++  DGF      L      +    ++G P +++   L+  + +L++   
Sbjct: 113 --------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVP 160

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKCY 256
           +V AP + H + D + D     +Q  ++I++G  +               VS   D   Y
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIY 220

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score =  102 bits (255), Expect = 1e-25
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 92  QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
              L       +  V  I+G+AG    GKST A  +   + +                  
Sbjct: 75  AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122

Query: 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFD 210
             ++  DGF    ++L      +    R+G P ++N   L+  + ++++      AP + 
Sbjct: 123 VDLVTTDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178

Query: 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           H   D +     V     ++I++G  +   G     VS +FD  
Sbjct: 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFS 221

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score =  102 bits (255), Expect = 1e-25
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 26/178 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y    Q L   +             I+G+AG    GKST +  +   +++          
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     V+  DGF    ++L+     +    R+G P +++   LL  L  +++ Q 
Sbjct: 125 --------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEK 254
           +V  P + H   D V     +  Q  +VI++G  +   G       +   VS  FD  
Sbjct: 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFS 230

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLR 199
                      V  MD   +  ++      E+  E +        ++   L     + L+
Sbjct: 53  ---------VCVFHMDDHIVERAKRYHTGNEEWFEYY-----YLQWDVEWLTHQLFRQLK 98

Query: 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
               +  P +DH      +  + +     +++++G +L       K+    FD   Y
Sbjct: 99  ASHQLTLPFYDHETDTHSKRTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFVVY 149

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 28/161 (17%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKST+  +++  + +   +         +      +L  D F+  L+   
Sbjct: 27  LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75

Query: 169 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             +  K    +     P  F+  L+   LKN+    +V  P++D      + +  +V   
Sbjct: 76  -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
             VV+ +G  +F      +++  MF  + +  +  +   +R
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLRLFVDTDSDVRLSR 170

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 15/159 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +         +          +L  D F+  L+   
Sbjct: 24  LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
                 +       P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 75  -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
           VV+ +G   F      ++V  +F  K +  +  +T  +R
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSR 167

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 35/159 (22%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G++G   +GK+TLA    + + K  P                +V+  D F    S++ 
Sbjct: 23  IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E  K    +       N   +++ +            S D    +             
Sbjct: 64  --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
           ++I++G  LF      K + ++++   + T   E    R
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRSYFLTIPYEECKRR 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 3e-12
 Identities = 47/283 (16%), Positives = 78/283 (27%), Gaps = 77/283 (27%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPV--FGKTRSL 58
            D   +   P++ LS    +              G L   W   +   + V  F +   L
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87

Query: 59  VQN----KTSLKVLCSQQREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
             N     + +K    Q   +  +     D +Y      A+    RL P   L      +
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
                V + G  G+GK+ +A +V             S+  Q K            F ++ 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL-----------SYKVQCKMD----------FKIF- 185

Query: 165 SQLDAMEDPKEAHARRGAPW-TFN----PLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVE 218
                              W        P  +L  L+ L  Q    +    DH     + 
Sbjct: 186 -------------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 219 -DDILVGLQHKVVIVDGNY----LFLDGGVW-KDVSSMFDEKC 255
              I   L+   ++    Y    L L   V      + F+  C
Sbjct: 227 IHSIQAELRR--LLKSKPYENCLLVLL-NVQNAKAWNAFNLSC 266

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 60.8 bits (147), Expect = 4e-11
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 30/177 (16%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST    V    ++I+ ++             A  +  D FH + 
Sbjct: 3   KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
                 E  +   A       F+        L    +     G     ++ H   +    
Sbjct: 49  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108

Query: 220 DILVGL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
            +  G             ++  +G +  +      +++ + D K          + +
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLKIGVVPVINLEWIQ 164

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 35/153 (22%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G+AG   +GK+TLA    + +       A +   +V       +LPMD ++  L  L 
Sbjct: 8   VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50

Query: 169 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223
                      R       P  F+  L L   + L     V  P +D            V
Sbjct: 51  --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102

Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
                VVI++G  +       K++  + D K +
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLKVF 130

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
            +  +GP G+GKS  + ++   + + +  + S                +D F+L      
Sbjct: 33  FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81

Query: 169 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 219
            + +  + +     RG P T +  LL   L  + N      Q +V  P +D        D
Sbjct: 82  KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        +
Sbjct: 26  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   +
Sbjct: 25  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           K +  + GP G GKST    +  +++ 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDN 28

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I +VE+      +   AQ+LL    L  +    H VG+ G PG GKST    +   +
Sbjct: 49  RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
              +   +               +   VGL+GPPGAGKST      + +
Sbjct: 50  AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.96
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.95
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.95
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.95
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.95
1g6h_A	257	High-affinity branched-chain amino acid transport	99.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.94
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.94
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.94
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.94
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.93
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.93
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.93
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.93
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.92
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.92
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.92
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.92
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.92
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.91
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.9
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.89
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.88
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.88
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.88
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.88
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.88
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.87
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.84
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.82
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.82
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.82
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.82
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.82
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.81
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.8
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.8
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.8
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.79
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.79
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.78
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.77
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.77
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.74
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.69
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.68
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.67
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.67
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.61
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.6
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.58
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.57
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.55
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.54
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.52
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.45
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.44
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.43
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.37
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.36
2og2_A	359	Putative signal recognition particle receptor; nuc	99.35
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.34
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.34
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.33
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.31
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.26
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.24
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.23
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.23
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.22
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.19
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.19
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.18
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.17
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.14
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.13
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.11
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.1
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.09
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.09
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.09
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.07
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.07
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.05
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.04
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.03
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.02
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.99
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.98
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.97
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.93
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.93
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.92
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.9
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.88
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.84
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.83
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.83
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.81
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.81
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.79
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.77
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.76
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.73
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.73
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.69
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.67
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.64
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.62
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.62
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.62
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.6
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.6
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.58
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.56
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.55
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.54
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.49
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.49
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.48
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.45
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.44
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.43
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.42
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.4
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.38
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.37
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.34
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.33
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.33
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.3
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.29
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.29
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.28
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.27
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.26
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.23
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.21
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.21
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.21
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.21
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.21
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.18
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.15
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.14
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.13
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.11
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.01
3ice_A	422	Transcription termination factor RHO; transcriptio	97.99
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.95
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.94
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.94
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.92
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.92
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.87
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.87
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.86
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.86
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.85
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.83
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.82
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.79
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.78
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.77
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.72
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.71
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.68
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.65
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.64
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.63
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.63
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.61
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.61
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.6
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.59
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.58
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.57
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.54
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.53
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.53
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.51
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.5
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.5
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.46
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.46
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.46
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.45
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.45
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.44
1via_A	175	Shikimate kinase; structural genomics, transferase	97.44
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.44
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.44
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.43
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.43
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.43
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.41
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.4
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.4
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.39
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.39
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.37
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.37
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.36
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.35
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.35
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.34
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.34
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.34
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.29
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.29
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.28
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.27
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.24
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.23
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.23
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.22
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.22
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.22
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.22
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.21
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.21
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.19
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.18
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.18
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.17
3kta_B	173	Chromosome segregation protein SMC; structural mai	97.16
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.16
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.16
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.15
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.15
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.14
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.13
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.12
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.12
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.11
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.11
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.11
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.1
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.09
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.06
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.03
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.01
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.95
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.92
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.91
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.91
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.91
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.9
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.9
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.9
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.85
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.85
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.83
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.81
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.8
3bos_A	242	Putative DNA replication factor; P-loop containing	96.78
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.74
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.73
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.73
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.73
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.72
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.7
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.7
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.69
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.69
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.68
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.68
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.67
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.67
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.66
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.66
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.65
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.64
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.64
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.63
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.63
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.63
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.62
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.62
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.61
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.61
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.6
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.6
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.6
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.58
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.57
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.56
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.55
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.54
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.54
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.53
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.53
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.52
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.51
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.5
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.5
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.48
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.47
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.46
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.45
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.45
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.44
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.44
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.44
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.44
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.44
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.43
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.43
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.43
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.43
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.4
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.39
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.38
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.38
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.38
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.37
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.37
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.37
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.37
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.36
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.36
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.36
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.36
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.35
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.35
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.34
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.33
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.33
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.32
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.31
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.31
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.3
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.3
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.3
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.28
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.28
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.27
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.27
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.27
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.25
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.25
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.25
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.24
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.23
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.23
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.23
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.23
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.22
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.22
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.21
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.21
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.2
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.18
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.18
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.18
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.18
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.18
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.17
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.16
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.14
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.12
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.12
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.11
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.1
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.1
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.09
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.08
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.08
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.08
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.08
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.05
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.03
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.03
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.03
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.0
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.0
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.99
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.95
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.93
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.93
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.93
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.9
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.9
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.89
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.89
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.84
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.83
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.83
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.81
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.81
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.81
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.8
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.79
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.79
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.78
2xxa_A	433	Signal recognition particle protein; protein trans	95.77
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.75
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.74
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.73
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.73
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.71
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.69
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.69
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.67
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.67
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.66
3pvs_A	447	Replication-associated recombination protein A; ma	95.66
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.64
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.62
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.58
3io5_A	333	Recombination and repair protein; storage dimer, i	95.57
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.57
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.55
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.52
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.49
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.47
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.47
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.46
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.44
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.4
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.38
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.36
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.34
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.29
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.27
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.26
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.22
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.22
2qgz_A	308	Helicase loader, putative primosome component; str	95.21
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.2
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.19
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.19
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.18

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.96  E-value=3.4e-30  Score=236.88  Aligned_cols=181  Identities=14%  Similarity=0.116  Sum_probs=140.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      ..++++||+|.|++..    +|+|+||++++||+++|+||||||||||+|+|+|++.   |++|++ +++...   ++  
T Consensus         2 ~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~   74 (381)
T 3rlf_A            2 ASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE   74 (381)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGG
T ss_pred             CEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHH
Confidence            4689999999998643    7899999999999999999999999999999999996   888984 444211   11  


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....+++++.. + .+.+++.++..+..+..+.........+.++++.+++.  .+.++.++|+||+||+++++++..+|
T Consensus        75 r~ig~VfQ~~~-l-~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P  152 (381)
T 3rlf_A           75 RGVGMVFQSYA-L-YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP  152 (381)
T ss_dssp             SCEEEECTTCC-C-CTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEecCCc-C-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence            12233666542 2 23478878777766666654444445667888887775  35677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      ++||+|||+..||+..++++.+.+.        ..|||+||.++++
T Consensus       153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~  198 (381)
T 3rlf_A          153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM  198 (381)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            9999999999999977777666654        2389999986653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.96  E-value=4.4e-30  Score=234.54  Aligned_cols=180  Identities=11%  Similarity=0.166  Sum_probs=134.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------  147 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------  147 (270)
                      ++++++||+|.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|++.   |++|++ +++...       
T Consensus         3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~   75 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL   75 (359)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred             cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            3689999999998643    7899999999999999999999999999999999996   888884 333210       


Q ss_pred             C---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225          148 P---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       148 ~---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~  222 (270)
                      .   ...|. ++++.. + .+.+++.++..+.....+.........+.++++.+++.  .+.++.++|+||+||++++++
T Consensus        76 ~~~~r~ig~-vfQ~~~-l-~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA  152 (359)
T 3fvq_A           76 PVRERRLGY-LVQEGV-L-FPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA  152 (359)
T ss_dssp             CGGGSCCEE-ECTTCC-C-CTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             chhhCCEEE-EeCCCc-C-CCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence            1   12333 565532 2 23366666554433333333333345567788887775  356778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      +..+|++|++|||+..||+..+.++.+.+.        ..|||+||.++++
T Consensus       153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~  203 (359)
T 3fvq_A          153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL  203 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            999999999999999999987777765332        3489999987653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.96  E-value=1.6e-29  Score=231.17  Aligned_cols=185  Identities=16%  Similarity=0.136  Sum_probs=139.5

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-----
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----  147 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-----  147 (270)
                      +.++++++||+|.|+.....+.+|+||||+|++||++||+||||||||||+|+|+|+++   |++|++ +++...     
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence            34579999999999753333557899999999999999999999999999999999996   888884 444211     


Q ss_pred             ------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (270)
Q Consensus       148 ------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~  219 (270)
                            +...| +++++...  .+.+++.++..+.....+.........+.++++.+++.  .+.++.++|+||+||+++
T Consensus        98 ~~~~~~r~~Ig-~v~Q~~~l--~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI  174 (366)
T 3tui_C           98 SELTKARRQIG-MIFQHFNL--LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI  174 (366)
T ss_dssp             HHHHHHHTTEE-EECSSCCC--CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred             HHHHHHhCcEE-EEeCCCcc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence                  11233 36665432  22367777776655555554333445567788887775  356788999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +++++.+|++||+|||+..||+..++.+.+++.        ..|+|+|+.+..
T Consensus       175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~  227 (366)
T 3tui_C          175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV  227 (366)
T ss_dssp             HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence            999999999999999999999988777777765        238888887543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.95  E-value=2.6e-29  Score=216.15  Aligned_cols=179  Identities=17%  Similarity=0.098  Sum_probs=129.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P---  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p---  149 (270)
                      ++++++||++.|++..    +|+|+||++++|+++||+||||||||||+|+|+|++.   |++|++ +++... . +   
T Consensus         3 ~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   75 (224)
T 2pcj_A            3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE   75 (224)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHH
T ss_pred             cEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence            4699999999997632    6799999999999999999999999999999999985   777773 333211 1 0   


Q ss_pred             ------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225          150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~  221 (270)
                            ....+++++....  +.+++.++..+.....+.........+.++++.+++..  +.++..+|+||+||++++.
T Consensus        76 ~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar  153 (224)
T 2pcj_A           76 LSLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR  153 (224)
T ss_dssp             HHHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHhCcEEEEecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence                  1122355543221  22455555544333333321222344567788777653  4566799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ++..+|+++|+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~  202 (224)
T 2pcj_A          154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL  202 (224)
T ss_dssp             HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            9999999999999999999988777777765       23777887654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.95  E-value=4.4e-29  Score=228.54  Aligned_cols=180  Identities=17%  Similarity=0.183  Sum_probs=136.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      .+++++||++.|++..    +|+|+||++++||+++|+||||||||||+|+|+|++.   |++|++ +++...   .+  
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~   74 (362)
T 2it1_A            2 VEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD   74 (362)
T ss_dssp             CCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred             cEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhH
Confidence            3589999999997533    6799999999999999999999999999999999996   888884 443211   11  


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....+++++.. + .+.+++.++..+.....+.........+.++++.+++..  +.++.++|+||+||+++++++..+|
T Consensus        75 r~ig~v~Q~~~-l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  152 (362)
T 2it1_A           75 RNVGLVFQNWA-L-YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP  152 (362)
T ss_dssp             TTEEEECTTCC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEecCcc-c-CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            12233665532 2 234677777766555555433223345677888887753  5667799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++|++|||+..||+..++++.+.+.        ..||++||.+++
T Consensus       153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a  197 (362)
T 2it1_A          153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA  197 (362)
T ss_dssp             SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence            9999999999999987777776664        248999998654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.95  E-value=4.5e-29  Score=216.15  Aligned_cols=182  Identities=15%  Similarity=0.140  Sum_probs=128.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      +++++||++.|+.......+|+|+||++++||++||+||||||||||+|+|+|++.   |++|++ +++...   .+   
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~   77 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence            37899999999753322347899999999999999999999999999999999995   778874 333211   10   


Q ss_pred             -----CceEEeecCCCCccccccCcccChHHHHHhc---CCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhh
Q 024225          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE  218 (270)
Q Consensus       150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~---g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~  218 (270)
                           ....+++++....  +.+++.++........   +...........++++.+.+..   +.++..+|+||+||++
T Consensus        78 ~~~~~~~i~~v~Q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~  155 (235)
T 3tif_A           78 TKIRRDKIGFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA  155 (235)
T ss_dssp             HHHHHHHEEEECTTCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred             HHHhhccEEEEecCCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence                 1123355554322  2245555554432221   1111122344566777777653   4567799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++.++..+|++||+|||+..||+...+.+.+++.        ..|+++|+.+.
T Consensus       156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~  208 (235)
T 3tif_A          156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV  208 (235)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH
Confidence            9999999999999999999999987777776664        23788888753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.95  E-value=3.9e-29  Score=229.83  Aligned_cols=180  Identities=14%  Similarity=0.115  Sum_probs=136.2

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV--------  146 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~--------  146 (270)
                      .+++++||+|.|++..    +|+|+||++++||+++|+||||||||||+|+|+|++.   |++|++ +++..        
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~   74 (372)
T 1g29_1            2 AGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGI   74 (372)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTE
T ss_pred             CEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccc
Confidence            3689999999997633    6799999999999999999999999999999999996   888884 33321        


Q ss_pred             -CCC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhh
Q 024225          147 -KPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       147 -~~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~  221 (270)
                       ..+  ....+++++.. + .+.+++.++..+.....+.........+.++++.+++.  .+.++.++|+||+||+++++
T Consensus        75 ~~~~~~r~ig~v~Q~~~-l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr  152 (372)
T 1g29_1           75 FVPPKDRDIAMVFQSYA-L-YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR  152 (372)
T ss_dssp             ECCGGGSSEEEECSCCC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             cCCHhHCCEEEEeCCCc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence             111  11233555532 2 23467777777655555543322234567788877765  35677799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++..+|++|++|||+..||+..++++.+.+.        ..|||+||.+++
T Consensus       153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a  203 (372)
T 1g29_1          153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA  203 (372)
T ss_dssp             HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred             HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence            9999999999999999999987777766654        248999998654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.95  E-value=5.4e-29  Score=228.70  Aligned_cols=181  Identities=14%  Similarity=0.153  Sum_probs=129.0

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      |.+++++||+|.|++..    +|+|+||++++||+++|+||||||||||+|+|+|++.   |++|++ +++...   .+ 
T Consensus         9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A            9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence            44699999999997633    6799999999999999999999999999999999995   788874 333211   11 


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....+++++.. ++ +.+++.++..+.....+.........+.++++.+++.  .+.++.++|+||+||+++++++..+
T Consensus        82 ~r~ig~v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  159 (372)
T 1v43_A           82 DRNISMVFQSYA-VW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE  159 (372)
T ss_dssp             GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred             hCcEEEEecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence             11223555432 22 2356555444322222222111224566778877765  3567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      |++|++|||+..||...++++.+.+.        ..|||+||.+++
T Consensus       160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a  205 (372)
T 1v43_A          160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA  205 (372)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            99999999999999987777776664        248999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.95  E-value=3e-29  Score=229.44  Aligned_cols=180  Identities=17%  Similarity=0.186  Sum_probs=132.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      .+++++||+|.|++..    +|+++||++++||+++|+||||||||||+|+|+|++.   |++|++ +++...   .+  
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~   74 (359)
T 2yyz_A            2 PSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY   74 (359)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred             cEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhh
Confidence            3589999999997633    7799999999999999999999999999999999995   888884 443211   11  


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ....+++++.. ++ +++++.++..+..+..+.+.......+.++++.+++.  .+.++.++|+||+||+++++++..+|
T Consensus        75 r~ig~v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P  152 (359)
T 2yyz_A           75 REVGMVFQNYA-LY-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP  152 (359)
T ss_dssp             TTEEEECSSCC-CC-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            12233555432 22 3366666555433222322112234567788887765  35677799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++|++|||+..||+..++.+.+.+.        ..||++||.+++
T Consensus       153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~  197 (359)
T 2yyz_A          153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA  197 (359)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence            9999999999999987777766654        248999998654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.95  E-value=6.8e-29  Score=226.63  Aligned_cols=180  Identities=14%  Similarity=0.249  Sum_probs=136.1

Q ss_pred             ceEEeccchhhh-hhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        76 ~~l~~~~l~~~y-~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      .+++++||+|.| ++..    +|+|+||++++||+++|+||||||||||+|+|+|++.   |++|++ +++...   .+ 
T Consensus        13 ~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   85 (355)
T 1z47_A           13 MTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPPQ   85 (355)
T ss_dssp             EEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred             ceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCChh
Confidence            579999999999 6533    7799999999999999999999999999999999995   888884 443211   11 


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....+++++.. + .+.+++.++..+.....+.+.......+.++++.+++.  .+.++.++|+||+||+++++++..+
T Consensus        86 ~r~ig~v~Q~~~-l-~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~  163 (355)
T 1z47_A           86 KRNVGLVFQNYA-L-FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR  163 (355)
T ss_dssp             GSSEEEECGGGC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hCcEEEEecCcc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence             11233555532 2 23467777776655544543222334567788887765  3567779999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      |++|++|||+..||...++.+.+.+.        ..||++||.+++
T Consensus       164 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a  209 (355)
T 1z47_A          164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA  209 (355)
T ss_dssp             CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence            99999999999999987777776654        248999998654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.95  E-value=1.1e-28  Score=218.39  Aligned_cols=180  Identities=16%  Similarity=0.130  Sum_probs=130.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ++++++||++.|++..   .+|+|+||++++||++||+||||||||||+|+|+|++.   |++|++ +++....      
T Consensus         6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~   79 (275)
T 3gfo_A            6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI   79 (275)
T ss_dssp             EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred             cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence            4799999999997521   26799999999999999999999999999999999995   777773 3332110      


Q ss_pred             ----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhh
Q 024225          149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       149 ----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~  221 (270)
                          ...| +++++.. .++  .+++.++..+.....+.........+.++++.+++.  .+.++..+|+||+||++++.
T Consensus        80 ~~~~~~ig-~v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr  156 (275)
T 3gfo_A           80 MKLRESIG-IVFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG  156 (275)
T ss_dssp             HHHHHSEE-EECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             HHHhCcEE-EEEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence                1123 3555432 112  245555555544444443322334566777777765  35567799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++..+|++||+|||+..||+...+.+.+++.        ..|+++|+.+..
T Consensus       157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~  207 (275)
T 3gfo_A          157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV  207 (275)
T ss_dssp             HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence            9999999999999999999977766666554        237888887653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.95  E-value=7.9e-29  Score=226.38  Aligned_cols=182  Identities=14%  Similarity=0.144  Sum_probs=133.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV--------  146 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~--------  146 (270)
                      .+++++||+|.|++  ....+|+|+||++++||+++|+||||||||||+|+|+|++.   |++|++ +++..        
T Consensus         2 ~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~   76 (353)
T 1oxx_K            2 VRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLI   76 (353)
T ss_dssp             CCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEES
T ss_pred             cEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECccccccc
Confidence            35899999999975  22116799999999999999999999999999999999995   888884 33321        


Q ss_pred             CCC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225          147 KPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       147 ~~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~  222 (270)
                      ..+  ....+++++.. + .+.+++.++..+.....+.+.......+.++++.+++.  .+.++.++|+||+||++++++
T Consensus        77 ~~~~~r~ig~v~Q~~~-l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra  154 (353)
T 1oxx_K           77 VPPEDRKIGMVFQTWA-L-YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA  154 (353)
T ss_dssp             SCGGGSCEEEEETTSC-C-CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             CChhhCCEEEEeCCCc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence            111  11233665532 2 23366666655433333332222234567788877765  356777999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +..+|++|++|||+..||+..++++.+.+.        ..||++||.+++
T Consensus       155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~  204 (353)
T 1oxx_K          155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI  204 (353)
T ss_dssp             HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred             HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            999999999999999999988777777664        248999998654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.95  E-value=1.7e-28  Score=215.83  Aligned_cols=179  Identities=14%  Similarity=0.148  Sum_probs=128.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      ++++++||++.|++..    +|+|+||++++||++||+||||||||||+|+|+|+++   |++|++ +++....   .  
T Consensus        23 ~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   95 (263)
T 2olj_A           23 QMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNL   95 (263)
T ss_dssp             CSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCH
T ss_pred             heEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccH
Confidence            4699999999997633    6799999999999999999999999999999999995   788874 3332110   0  


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~  222 (270)
                          ....+++++...  .+.+++.++..+.. ...+.........+.++++.+++..  +.++..+|+||+||++++.+
T Consensus        96 ~~~~~~i~~v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra  173 (263)
T 2olj_A           96 NKVREEVGMVFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA  173 (263)
T ss_dssp             HHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHhCcEEEEeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence                012335555332  12345555554422 2233321112334567777776643  45667999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +..+|++||+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~  221 (263)
T 2olj_A          174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF  221 (263)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence            999999999999999999988777777765       23777877644

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=1.5e-28  Score=215.37  Aligned_cols=180  Identities=12%  Similarity=0.070  Sum_probs=129.7

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----  148 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----  148 (270)
                      .|++++++||++.|++..    +|+++||++++|+++||+||||||||||+|+|+|+++   |++|++ +++....    
T Consensus        12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~   84 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH   84 (256)
T ss_dssp             --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred             cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence            467899999999997533    6799999999999999999999999999999999985   778874 3332111    


Q ss_pred             ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ...+ ++.++....  +.+++.++..+.....+.........+.++++.+++..  +.++..||+||+||++++.++
T Consensus        85 ~~~~~i~-~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL  161 (256)
T 1vpl_A           85 EVRKLIS-YLPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL  161 (256)
T ss_dssp             HHHTTEE-EECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhhcEE-EEcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence               1123 355554322  23566665554433333321111234567777777653  456679999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ..+|++||+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~  208 (256)
T 1vpl_A          162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE  208 (256)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred             HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence            99999999999999999987777777665       23677777643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.95  E-value=6.5e-28  Score=206.02  Aligned_cols=176  Identities=14%  Similarity=0.160  Sum_probs=128.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCce
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDVA  152 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~g  152 (270)
                      ..++++||++.|++ .    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|++ +++...  .....
T Consensus         9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i   80 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI   80 (214)
T ss_dssp             CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred             ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence            46899999999975 3    7899999999999999999999999999999999985   777774 333110  00112


Q ss_pred             EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      .++.++....  ..+++.++..+.....+. . .+...+.++++.+++.. +..+..+|+||+||++++.++..+++++|
T Consensus        81 ~~v~q~~~~~--~~~tv~enl~~~~~~~~~-~-~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll  156 (214)
T 1sgw_A           81 FFLPEEIIVP--RKISVEDYLKAVASLYGV-K-VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV  156 (214)
T ss_dssp             EEECSSCCCC--TTSBHHHHHHHHHHHTTC-C-CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             EEEeCCCcCC--CCCCHHHHHHHHHHhcCC-c-hHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            2355443321  224555555443333333 2 22456677888887654 45566899999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      +|||+..+|+..++.+.+++.       ..|+++|+.+.
T Consensus       157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~  195 (214)
T 1sgw_A          157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS  195 (214)
T ss_dssp             EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            999999999988777777665       23778887653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.95  E-value=2.9e-28  Score=213.73  Aligned_cols=181  Identities=13%  Similarity=0.079  Sum_probs=127.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC----
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----  149 (270)
                      +++++++||++.|++..    +|+|+||++++||++||+||||||||||+|+|+|++.   |++|++ +++.....    
T Consensus         5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   77 (257)
T 1g6h_A            5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   77 (257)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            35799999999997633    7799999999999999999999999999999999995   777773 33321110    


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHh--cC-----------CCCCccHHHHHHHHHhhccCC--CcCCCCCC
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQG--SVYAPSFD  210 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S  210 (270)
                          ....+++++....  +.+++.++..+....  .+           .........+.++++.+++..  +..+..+|
T Consensus        78 ~~~~~~i~~v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  155 (257)
T 1g6h_A           78 ELYHYGIVRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS  155 (257)
T ss_dssp             HHHHHTEEECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred             HHHhCCEEEEccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence                0122244443211  224544444332111  12           111112234567777776643  45667999


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      +||+||++++.++..+|++||+|||+..||+...+.+.+++.       ..|+++|+.+..
T Consensus       156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~  216 (257)
T 1g6h_A          156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV  216 (257)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence            999999999999999999999999999999988777777765       237888887543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.94  E-value=3.2e-28  Score=214.48  Aligned_cols=178  Identities=14%  Similarity=0.104  Sum_probs=126.7

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC----
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----  149 (270)
                      +++++++||++.|++..    +|+|+||++++||++||+||||||||||+|+|+|++.   |++|++ +++.....    
T Consensus         9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~   81 (266)
T 4g1u_C            9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK   81 (266)
T ss_dssp             CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred             cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence            35799999999998743    7799999999999999999999999999999999995   777773 33321110    


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG  224 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~  224 (270)
                         ....++.++....+  .+++.++..+.....  ..........++++.+.+..  +.++..+|+||+||++++.++.
T Consensus        82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~  157 (266)
T 4g1u_C           82 ALARTRAVMRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA  157 (266)
T ss_dssp             HHHHHEEEECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             HHhheEEEEecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence               11222444433211  134444332221111  22233455677788777653  4566789999999999999999


Q ss_pred             c------CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          225 L------QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       225 ~------~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      .      +|++||+|||+..||+.....+.+++.        ..|+++||.+.
T Consensus       158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~  210 (266)
T 4g1u_C          158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL  210 (266)
T ss_dssp             HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred             cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence            8      999999999999999987777776664        23778888754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.94  E-value=3.5e-28  Score=213.76  Aligned_cols=178  Identities=15%  Similarity=0.111  Sum_probs=128.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------  148 (270)
                      +++++||++.|++..    +|+|+||++++|+++||+||||||||||+|+|+|+++   |++|++ +++....       
T Consensus         6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   78 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   78 (262)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence            699999999997633    6799999999999999999999999999999999995   778874 3332111       


Q ss_pred             -----C--------CceEEeecCCCCccccccCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCc
Q 024225          149 -----P--------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDH  211 (270)
Q Consensus       149 -----p--------~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~  211 (270)
                           +        ....+++++...  .+.+++.++..+.. ...+.........+.++++.+++..   +.++..+|+
T Consensus        79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg  156 (262)
T 1b0u_A           79 QLKVADKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG  156 (262)
T ss_dssp             SEEESCHHHHHHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred             cccccChhhHHHHhcceEEEecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence                 0        012335555322  12355655554422 2223321112344567788777643   456679999


Q ss_pred             ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ||+||++++.++..+|++||+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~  215 (262)
T 1b0u_A          157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  215 (262)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999999999999999999999999987777777664       23777887644

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.94  E-value=6.1e-28  Score=220.00  Aligned_cols=173  Identities=14%  Similarity=0.168  Sum_probs=132.4

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---C
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---D  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---~  150 (270)
                      ++++||++.|++    . +++++||++++||+++|+||||||||||+|+|+|++.   |++|++ +++...   .+   .
T Consensus         2 l~~~~l~~~y~~----~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~   73 (348)
T 3d31_A            2 IEIESLSRKWKN----F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHD   73 (348)
T ss_dssp             EEEEEEEEECSS----C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHHT
T ss_pred             EEEEEEEEEECC----E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhCc
Confidence            789999999965    2 6799999999999999999999999999999999995   888884 343211   11   2


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      .|. ++++.. + .+.+++.++..+.....+....   ..+.++++.+++..  +.++.++|+||+||+++++++..+|+
T Consensus        74 ig~-v~Q~~~-l-~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~  147 (348)
T 3d31_A           74 IAF-VYQNYS-L-FPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK  147 (348)
T ss_dssp             CEE-ECTTCC-C-CTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred             EEE-EecCcc-c-CCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            333 555432 2 2346777777665444444322   56778888887753  56777999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +|++|||+..||+..++.+.+.+.        ..||++||.++.
T Consensus       148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~  191 (348)
T 3d31_A          148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA  191 (348)
T ss_dssp             EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            999999999999987777776664        248999997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=2.5e-27  Score=205.78  Aligned_cols=178  Identities=16%  Similarity=0.086  Sum_probs=125.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C--C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P--P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~--p--  149 (270)
                      ++++++||++.|++..    +|+++||++++||++||+||||||||||+|+|+|+++   |++|++ +++... .  +  
T Consensus         5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence            3699999999997632    6799999999999999999999999999999999985   788884 333211 0  0  


Q ss_pred             ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-cC--CCcCCCCCCcccCChhhhhhhh
Q 024225          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~-~~--~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                         ....+++++....  ..+++.++..+.. ............+.++++.+. +.  .+.++..+|+||+||++++.++
T Consensus        78 ~~~~~i~~v~q~~~l~--~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL  154 (240)
T 1ji0_A           78 INRMGIALVPEGRRIF--PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL  154 (240)
T ss_dssp             HHHTTEEEECSSCCCC--TTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred             HHhCCEEEEecCCccC--CCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence               1123355554221  2245544443321 111111112234456666653 32  3566779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ..+|++||+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~  201 (240)
T 1ji0_A          155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG  201 (240)
T ss_dssp             TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            99999999999999999987777777664       23788888643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.94  E-value=3.3e-27  Score=207.95  Aligned_cols=182  Identities=15%  Similarity=0.085  Sum_probs=126.8

Q ss_pred             eEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CC
Q 024225           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PD  150 (270)
Q Consensus        77 ~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~  150 (270)
                      +++++||++.|+ +......+|+|+||++++|+++||+||||||||||+|+|+|++.   |++|++ +++....    ..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence            488999999997 21000226799999999999999999999999999999999985   777774 3332110    01


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhhhhhccC
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      ...++.++..... ..+++.++..+..... .........+.++++.+++.    .+..+..+|+||+||++++.++..+
T Consensus        79 ~i~~v~q~~~~~~-~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~  156 (266)
T 2yz2_A           79 NIGIAFQYPEDQF-FAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE  156 (266)
T ss_dssp             GEEEECSSGGGGC-CCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hEEEEeccchhhc-CCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence            1223555421111 1144444433321111 22223345667888888776    3556679999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      |++||+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~  200 (266)
T 2yz2_A          157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET  200 (266)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            99999999999999988777777665       23778887654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.94  E-value=9.6e-28  Score=212.79  Aligned_cols=181  Identities=14%  Similarity=0.019  Sum_probs=122.8

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P---  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p---  149 (270)
                      ++++++||++.|++..    +|+|+||++++||++||+||||||||||+|+|+|+++   |++|++ +++....  .   
T Consensus        20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~   92 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA   92 (279)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred             ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence            3699999999997632    6799999999999999999999999999999999995   667763 3332111  0   


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHh----cCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~----~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~  219 (270)
                          ....++.++........+++.++..+....    ++.........+.++++.+++.  .+.++..+|+||+||+++
T Consensus        93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l  172 (279)
T 2ihy_A           93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI  172 (279)
T ss_dssp             HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence                012224443221111112333333221000    0111111123456677777664  345677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cc--eEEeccccc
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EK--CYATSFKET  263 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~--i~v~~~~~~  263 (270)
                      +.++..+|++||+|||+..||+..++.+.+++.       ..  |+++|+.+.
T Consensus       173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~  225 (279)
T 2ihy_A          173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE  225 (279)
T ss_dssp             HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred             HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence            999999999999999999999987777777664       23  678888654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.93  E-value=2.8e-27  Score=206.98  Aligned_cols=174  Identities=14%  Similarity=0.100  Sum_probs=125.3

Q ss_pred             ceEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~  154 (270)
                      ++++++||++.|+ +..    +|+++||++++|+++||+||||||||||+|+|+|+++   |++|++..    ....+ +
T Consensus         3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~-~   70 (253)
T 2nq2_C            3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIG-F   70 (253)
T ss_dssp             EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEE-E
T ss_pred             ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEE-E
Confidence            3689999999997 532    6799999999999999999999999999999999985   66676431    11223 2


Q ss_pred             eecCCCCccccccCcccChHHHHHh-cCC---CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCc
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHAR-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~-~g~---~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      ++++.....  .+++.++..+.... .+.   ....+...+.++++.+++.  .+..+..+|+||+||++++.++..+|+
T Consensus        71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  148 (253)
T 2nq2_C           71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK  148 (253)
T ss_dssp             ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred             EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            555443221  24555544332211 121   1112234456777777664  345667999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      +||+|||+..||+..++.+.+++.        ..|+++|+.+.
T Consensus       149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  191 (253)
T 2nq2_C          149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ  191 (253)
T ss_dssp             EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            999999999999987777777664        23778887654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.93  E-value=1.1e-26  Score=202.94  Aligned_cols=180  Identities=18%  Similarity=0.075  Sum_probs=117.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCccc-CCCCCCC--C-
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASS-FDSQVKP--P-  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl--l~~~~~~~G~~-~~~~~~~--p-  149 (270)
                      ++++++||++.|++..    +|+|+||++++|+++||+||||||||||+|+|+|+  +.   |++|++ +++....  + 
T Consensus         2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~~   74 (250)
T 2d2e_A            2 SQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELSP   74 (250)
T ss_dssp             CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSCH
T ss_pred             ceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCCH
Confidence            3689999999997632    67999999999999999999999999999999998  53   566663 3321110  0 


Q ss_pred             -----CceEEeecCCCCccccccCcccChHHHHH-hcCCCC--CccHHHHHHHHHhhccC---CCcCCCC-CCcccCChh
Q 024225          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGDPV  217 (270)
Q Consensus       150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~--~~~~~~~~~~l~~l~~~---~~~~~~~-~S~g~~~rv  217 (270)
                           ....+++++....  +.+++.++..+... ..+...  ......+.++++.+++.   .+.++.. +|+||+||+
T Consensus        75 ~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv  152 (250)
T 2d2e_A           75 DERARKGLFLAFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN  152 (250)
T ss_dssp             HHHHHTTBCCCCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred             HHHHhCcEEEeccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence                 0011123332211  12333333332221 111110  11123455677777763   2445567 999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      +++.++..+|++||+|||+..||+..++.+.+++.       ..|+++|+.+..
T Consensus       153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~  206 (250)
T 2d2e_A          153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL  206 (250)
T ss_dssp             HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred             HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            99999999999999999999999988777777765       237888887543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.93  E-value=1.7e-26  Score=203.61  Aligned_cols=183  Identities=16%  Similarity=0.107  Sum_probs=121.3

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP  149 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p  149 (270)
                      ..++++++||++.|++..    +|+|+||++++|+++||+||||||||||+|+|+|++. ..|++|++ +++...   .+
T Consensus        17 ~~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~~p~~G~I~~~g~~i~~~~~   91 (267)
T 2zu0_C           17 GSHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSP   91 (267)
T ss_dssp             ---CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT-CEEEEEEEEETTEEGGGSCH
T ss_pred             CCceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCcCCH
Confidence            345799999999997532    6799999999999999999999999999999999841 01566663 333110   00


Q ss_pred             ----C-ceEEeecCCCCccccccCcccChHHHHHh----cCCCC-C--ccHHHHHHHHHhhccCC---CcCCC-CCCccc
Q 024225          150 ----D-VATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW-T--FNPLLLLNCLKNLRNQG---SVYAP-SFDHGV  213 (270)
Q Consensus       150 ----~-~g~~i~~dg~~~~~~~l~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~l~~l~~~~---~~~~~-~~S~g~  213 (270)
                          . ...++.++....  +.+++.++.......    .+... .  .....+.++++.+++..   +.++. .+|+||
T Consensus        92 ~~~~~~~i~~v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq  169 (267)
T 2zu0_C           92 EDRAGEGIFMAFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE  169 (267)
T ss_dssp             HHHHHHTEEEECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHH
T ss_pred             HHHhhCCEEEEccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence                0 012244443221  123333333222110    12110 0  11234567777777642   34444 499999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      +||++++.++..+|++||+|||+..||+..++.+.+++..       .|+++|+.+.
T Consensus       170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~  226 (267)
T 2zu0_C          170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI  226 (267)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence            9999999999999999999999999999888888887652       3777887654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.93  E-value=1.2e-26  Score=202.26  Aligned_cols=173  Identities=14%  Similarity=0.122  Sum_probs=114.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      -++++||++.|++..  ..+|+++||++++||++||+||||||||||+|+|+|++.   |++|++ +++....   +   
T Consensus         7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~~~   81 (247)
T 2ff7_A            7 DITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWL   81 (247)
T ss_dssp             EEEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred             ceeEEEEEEEeCCCC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            488999999993211  126799999999999999999999999999999999984   666663 3321110   0   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~~~  215 (270)
                       ....+++++... +.  .++.++..     ++.. ......+.+.++.+...             ....+..+|+||+|
T Consensus        82 ~~~i~~v~Q~~~l-~~--~tv~enl~-----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q  152 (247)
T 2ff7_A           82 RRQVGVVLQDNVL-LN--RSIIDNIS-----LANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ  152 (247)
T ss_dssp             HHHEEEECSSCCC-TT--SBHHHHHT-----TTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH
T ss_pred             HhcEEEEeCCCcc-cc--ccHHHHHh-----ccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH
Confidence             011224443321 11  12222111     1111 12223333444433321             11234689999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      |+++++++..+|++||+|||+..||+..++.+.+++..      .|+++|+.+.
T Consensus       153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~  206 (247)
T 2ff7_A          153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST  206 (247)
T ss_dssp             HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            99999999999999999999999999888887777752      3778887654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.93  E-value=1.3e-26  Score=204.68  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=115.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--  149 (270)
                      .+++++||++.|++.. ...+|+++||++++|++++|+||||||||||+|+|+|++.   |++|++ +++....   +  
T Consensus        15 ~~l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   90 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY   90 (271)
T ss_dssp             CCEEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred             ceEEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence            4699999999997511 1226799999999999999999999999999999999984   666663 2321100   0  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHH---------HHHHHHhh--ccC--CCcCCCCCCcccC
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNL--RNQ--GSVYAPSFDHGVG  214 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---------~~~~l~~l--~~~--~~~~~~~~S~g~~  214 (270)
                        ....+++++... +.  .++.++..     ++.........         +.++++.+  ++.  .+.++..+|+||+
T Consensus        91 ~~~~i~~v~Q~~~l-~~--~tv~enl~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~  162 (271)
T 2ixe_A           91 LHTQVAAVGQEPLL-FG--RSFRENIA-----YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR  162 (271)
T ss_dssp             HHHHEEEECSSCCC-CS--SBHHHHHH-----TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHH
T ss_pred             HhccEEEEecCCcc-cc--ccHHHHHh-----hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHH
Confidence              012224443321 11  13322221     12111011011         12334444  221  2445679999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ||+++++++..++++||+|||+..||+..++.+.+++.        ..|+++|+.+.
T Consensus       163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~  219 (271)
T 2ixe_A          163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL  219 (271)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence            99999999999999999999999999988777777664        13677777653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.93  E-value=6.1e-27  Score=203.32  Aligned_cols=171  Identities=11%  Similarity=0.038  Sum_probs=117.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------CCC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------~p~  150 (270)
                      ++++||++.|++      .|+|+||++++ +++||+||||||||||+|+|+|++.   |++|++ +++...      ...
T Consensus         2 l~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   71 (240)
T 2onk_A            2 FLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRG   71 (240)
T ss_dssp             CEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSC
T ss_pred             EEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhCc
Confidence            688999999964      37999999999 9999999999999999999999985   667763 332110      111


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      .+. ++++...  .+.+++.++..+.....+.  ......+.++++.+++..  +.++..+|+||+||++++.++..+|+
T Consensus        72 i~~-v~q~~~l--~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  146 (240)
T 2onk_A           72 IGF-VPQDYAL--FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CBC-CCSSCCC--CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEE-EcCCCcc--CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            222 3333221  1113333322211100010  011234567777777653  45667999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ++|+|||+..||+..++.+.+++.        ..|+++|+.+.
T Consensus       147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~  189 (240)
T 2onk_A          147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE  189 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999999999987777776654        23778887643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.92  E-value=3.2e-26  Score=198.44  Aligned_cols=169  Identities=14%  Similarity=0.102  Sum_probs=115.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      .+++++||++.|+...  ..+|+++||++++|++++|+||||||||||+|+|+|++.   |++|++ +++     ..+ +
T Consensus         2 ~~l~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~-~   70 (237)
T 2cbz_A            2 NSITVRNATFTWARSD--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVA-Y   70 (237)
T ss_dssp             CCEEEEEEEEESCTTS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEE-E
T ss_pred             CeEEEEEEEEEeCCCC--CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEE-E
Confidence            3589999999997311  226799999999999999999999999999999999985   666663 332     122 2


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHH---HHhhccC-------CCcCCCCCCcccCChhhhhhhh
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~---l~~l~~~-------~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                      ++++.. ++  ..++.++..     ++.. .........+.   .+.+...       ....+..+|+||+||+++++++
T Consensus        71 v~Q~~~-~~--~~tv~enl~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL  142 (237)
T 2cbz_A           71 VPQQAW-IQ--NDSLRENIL-----FGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV  142 (237)
T ss_dssp             ECSSCC-CC--SEEHHHHHH-----TTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             EcCCCc-CC--CcCHHHHhh-----CccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            444432 11  233333222     1111 11111122221   1222211       1345669999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~~  263 (270)
                      ..+|+++|+|||+..||+..++.+.+.+.         ..|+++|+.+.
T Consensus       143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~  191 (237)
T 2cbz_A          143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY  191 (237)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence            99999999999999999999888888772         23778887654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.92  E-value=2.4e-26  Score=206.07  Aligned_cols=172  Identities=15%  Similarity=0.073  Sum_probs=112.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------  149 (270)
                      .++++||++.|++.   ..+|+|+||+|++|+++||+||||||||||+++|+|++.   |++|++ +++.....      
T Consensus        53 ~i~~~~vs~~y~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~~  126 (306)
T 3nh6_A           53 RIEFENVHFSYADG---RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASL  126 (306)
T ss_dssp             CEEEEEEEEESSTT---CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHHH
T ss_pred             eEEEEEEEEEcCCC---CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHHH
Confidence            59999999999642   126799999999999999999999999999999999994   555542 22211000      


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~  215 (270)
                       ....+++++... +.  .++.++.     .++... .....+.+.++....         +.    ......+|+||+|
T Consensus       127 r~~i~~v~Q~~~l-f~--~Tv~eNi-----~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQ  197 (306)
T 3nh6_A          127 RSHIGVVPQDTVL-FN--DTIADNI-----RYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ  197 (306)
T ss_dssp             HHTEEEECSSCCC-CS--EEHHHHH-----HTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHH
T ss_pred             hcceEEEecCCcc-Cc--ccHHHHH-----Hhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHH
Confidence             011224443321 11  1222211     122111 122223333332221         11    1233589999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      |+++++++..++++||+|||+..||+...+.+.+.+.      ..|+|+|+.+.
T Consensus       198 RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~  251 (306)
T 3nh6_A          198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST  251 (306)
T ss_dssp             HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred             HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence            9999999999999999999999999987777777665      33778877643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.92  E-value=9.2e-26  Score=198.40  Aligned_cols=174  Identities=16%  Similarity=0.137  Sum_probs=126.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-----CCCC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-----KPPD  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-----~~p~  150 (270)
                      +++++||++.|++......+|+++||+++ |++++|+||||||||||+|+|+|++    |++|++ +++..     ....
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~   75 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIR   75 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTT
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhh
Confidence            37899999999751000126799999999 9999999999999999999999986    788884 33311     1112


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-C--CcCCCCCCcccCChhhhhhhhccCC
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-G--SVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-~--~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      .+.++.++...    .+++.++..+.....    ......+.++++.+++. .  +.++..+|+||+||++++.++..+|
T Consensus        76 i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  147 (263)
T 2pjz_A           76 YSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP  147 (263)
T ss_dssp             EEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            22034444332    255555554433221    22345667888888776 3  4566799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhcc----ceEEeccccc
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKET  263 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~~  263 (270)
                      +++++|||+..||+..++.+.+++..    .|+++|+.+.
T Consensus       148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~  187 (263)
T 2pjz_A          148 EIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDM  187 (263)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred             CEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence            99999999999999888888877763    4778888654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.92  E-value=1.4e-25  Score=194.95  Aligned_cols=169  Identities=18%  Similarity=0.141  Sum_probs=117.0

Q ss_pred             EEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        78 l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      ++++||++.|+ +.    .+|+++||++++|++++|+||||||||||+++|+|+++   |++|++ +++...        
T Consensus         2 l~~~~l~~~y~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   74 (243)
T 1mv5_A            2 LSARHVDFAYDDSE----QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (243)
T ss_dssp             EEEEEEEECSSSSS----CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             EEEEEEEEEeCCCC----ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            78999999994 32    26799999999999999999999999999999999995   788884 333110        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC-------------cCCCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-------------~~~~~~S~g~~  214 (270)
                      ....+. ++++... +.  .++.++..     ++.........+.+.++.+.....             ..+..+|+||+
T Consensus        75 ~~~i~~-v~q~~~l-~~--~tv~enl~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~  145 (243)
T 1mv5_A           75 RSQIGF-VSQDSAI-MA--GTIRENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (243)
T ss_dssp             TTTCCE-ECCSSCC-CC--EEHHHHTT-----SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             HhhEEE-EcCCCcc-cc--ccHHHHHh-----hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence            112233 5555432 11  23322221     121112233445566666655321             12358999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      ||+++++++..+++++|+|||+..||+...+.+.+++.      ..|+++|+.+
T Consensus       146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~  199 (243)
T 1mv5_A          146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS  199 (243)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence            99999999999999999999999999966665555554      2477787764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.92  E-value=1e-25  Score=194.24  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=112.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      .+++++||++.|+...  ..+|+++||++++|++++|+||||||||||+|+|+|+++   |++|++ +++     ..+ +
T Consensus         5 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~-~   73 (229)
T 2pze_A            5 TEVVMENVTAFWEEGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS-F   73 (229)
T ss_dssp             EEEEEEEEEECSSTTS--CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEE-E
T ss_pred             ceEEEEEEEEEeCCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEE-E
Confidence            4699999999996321  236799999999999999999999999999999999984   555553 222     122 2


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCChhhhhh
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~rv~~~~  221 (270)
                      ++++... +.  .++.++.     .++..  .........++....         +.    ......+|+||+||+++++
T Consensus        74 v~q~~~~-~~--~tv~enl-----~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr  143 (229)
T 2pze_A           74 CSQFSWI-MP--GTIKENI-----IFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  143 (229)
T ss_dssp             ECSSCCC-CS--BCHHHHH-----HTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred             EecCCcc-cC--CCHHHHh-----hccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence            3433321 11  1332222     12211  111122222222211         11    1124689999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHh-hc------cceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~-~~------~~i~v~~~~~~  263 (270)
                      ++..+++++|+|||+..+|+..++.+.+. +.      ..|+++|+.+.
T Consensus       144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~  192 (229)
T 2pze_A          144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH  192 (229)
T ss_dssp             HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred             HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence            99999999999999999999999999885 32      23777777643

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.91  E-value=1.5e-25  Score=196.81  Aligned_cols=174  Identities=13%  Similarity=0.057  Sum_probs=115.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---  148 (270)
                      .+++++||++.|++.. ...+|+++||++++|+++||+||||||||||+|+|+|++.   + +|++ +++...   .   
T Consensus        16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~   90 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS   90 (260)
T ss_dssp             CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred             CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence            3589999999997521 1236799999999999999999999999999999999983   3 5663 333110   0   


Q ss_pred             -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCcccC
Q 024225          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG  214 (270)
Q Consensus       149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~~  214 (270)
                       .....++.++... +.  .++.++..     ++.. ........+.++.+.+.             ...++..+|+||+
T Consensus        91 ~~~~i~~v~Q~~~l-~~--~tv~enl~-----~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk  161 (260)
T 2ghi_A           91 IRSIIGIVPQDTIL-FN--ETIKYNIL-----YGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER  161 (260)
T ss_dssp             HHTTEEEECSSCCC-CS--EEHHHHHH-----TTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred             HhccEEEEcCCCcc-cc--cCHHHHHh-----ccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence             0112224444322 11  23322221     1211 11223333444333221             0134568999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ||+++++++..+++++|+|||+..||+...+.+.+++..      .|+++|+.+.
T Consensus       162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~  216 (260)
T 2ghi_A          162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST  216 (260)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred             HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence            999999999999999999999999999888877777652      3778887654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.91  E-value=6.3e-26  Score=209.52  Aligned_cols=171  Identities=14%  Similarity=0.146  Sum_probs=117.4

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--  149 (270)
                      ..++++||+|.|+...  ..+|+|+||+|++||+++|+||||||||||+|+|+|++    +++|++ +++...   .+  
T Consensus        18 ~~i~~~~l~~~y~~~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~~   91 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGG--NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQ   91 (390)
T ss_dssp             CCEEEEEEEEESSSSS--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHHH
T ss_pred             CeEEEEEEEEEecCCC--eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChHH
Confidence            4599999999995311  23789999999999999999999999999999999997    345552 333211   00  


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCC-----------CCcccC
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPS-----------FDHGVG  214 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~-----------~S~g~~  214 (270)
                        ....+++++.. ++.  .++.+       +..+........+.++++.+.+..  +.++..           +|+||+
T Consensus        92 ~rr~ig~v~Q~~~-lf~--~tv~e-------nl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr  161 (390)
T 3gd7_A           92 WRKAFGVIPQKVF-IFS--GTFRK-------NLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK  161 (390)
T ss_dssp             HHHTEEEESCCCC-CCS--EEHHH-------HHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred             HhCCEEEEcCCcc-cCc--cCHHH-------HhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence              11122443322 111  12221       222212223345556666665532  334444           999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ||+++++++..+|++|++|||+..||+..++++.+.+..      .|+++|+.+
T Consensus       162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e  215 (390)
T 3gd7_A          162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE  215 (390)
T ss_dssp             HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence            999999999999999999999999999888888877762      378888754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.90  E-value=2.5e-24  Score=187.85  Aligned_cols=168  Identities=17%  Similarity=0.094  Sum_probs=116.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      +++++||++.    .    +|+++||++++|++++|+||||||||||+|+|+|+++   |+ |++ +++....   +   
T Consensus         4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~   71 (249)
T 2qi9_C            4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL   71 (249)
T ss_dssp             EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred             EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence            6899999987    2    7899999999999999999999999999999999984   55 663 3321100   0   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                       ....++.++....  ..+++.++..     ++.........+.++++.+++..  +..+..+|+||+||++++.++..+
T Consensus        72 ~~~i~~v~q~~~~~--~~~tv~e~l~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~  144 (249)
T 2qi9_C           72 ALHRAYLSQQQTPP--FATPVWHYLT-----LHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI  144 (249)
T ss_dssp             HHHEEEECSCCCCC--TTCBHHHHHH-----TTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred             hceEEEECCCCccC--CCCcHHHHHH-----HhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence             0112244433211  1133333222     11100012445667777776643  456679999999999999999999


Q ss_pred             Cc-------EEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          227 HK-------VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       227 ~~-------ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ++       +||+|||+..||+..++.+.+++.       ..|+++|+.+.
T Consensus       145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~  195 (249)
T 2qi9_C          145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH  195 (249)
T ss_dssp             CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99       999999999999987777777664       23777777643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.90  E-value=4.2e-25  Score=198.73  Aligned_cols=173  Identities=23%  Similarity=0.302  Sum_probs=126.1

Q ss_pred             eEEeccchhhhhhhhccc-----------------ccccccce-ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC
Q 024225           77 VVEARCMDEVYDALAQRL-----------------LPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK  138 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v-----------------~~l~~isl-~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~  138 (270)
                      .|++++|++.|....+.+                 +.+ +++. ++++|+++||+||||||||||+++|+|++.   |+.
T Consensus        43 ~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~---~~~  118 (312)
T 3aez_A           43 QIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGE-PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA---RWD  118 (312)
T ss_dssp             CCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH---TST
T ss_pred             eEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcc-cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc---ccC
Confidence            478899999996422110                 111 2223 289999999999999999999999999995   332


Q ss_pred             cccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC-cCCCCCCcccCChh
Q 024225          139 ASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV  217 (270)
Q Consensus       139 G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~~rv  217 (270)
                      |        ... ..++.+|+++...   +..++... ...+|.+..++...+.++++.+..+.. ..++.||+|++||+
T Consensus       119 G--------~~~-v~~v~qd~~~~~~---t~~e~~~~-~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv  185 (312)
T 3aez_A          119 H--------HPR-VDLVTTDGFLYPN---AELQRRNL-MHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDII  185 (312)
T ss_dssp             T--------CCC-EEEEEGGGGBCCH---HHHHHTTC-TTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEE
T ss_pred             C--------CCe-EEEEecCccCCcc---cHHHHHHH-HHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhh
Confidence            2        122 3458999875432   22221111 112455666777888888988885543 67899999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR  267 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r  267 (270)
                      +++.++..++++||+||+++++|+.. ..+.+++|..|||+++.+.++.|
T Consensus       186 ~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R  234 (312)
T 3aez_A          186 PGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQW  234 (312)
T ss_dssp             EEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHH
T ss_pred             hhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHH
Confidence            99999999999999999999997311 36788899999999999886655

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.89  E-value=1.7e-23  Score=202.93  Aligned_cols=174  Identities=15%  Similarity=0.096  Sum_probs=118.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------  148 (270)
                      ..++++||++.|++..  ..+|+|+||++++||++||+||||||||||+++|+|++.   |++|++ +++....      
T Consensus       340 ~~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN  414 (582)
T ss_pred             CeEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence            3599999999997521  126799999999999999999999999999999999995   777773 3332110      


Q ss_pred             -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---------C----cCCCCCCcccC
Q 024225          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVG  214 (270)
Q Consensus       149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---------~----~~~~~~S~g~~  214 (270)
                       .....+++++... +.  .+..++..     ++.....+.+.+.+.++.++...         +    .....+|+||+
T Consensus       415 ~~~~i~~v~Q~~~l-~~--~tv~eni~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~  486 (582)
T 3b5x_A          415 LRRHFALVSQNVHL-FN--DTIANNIA-----YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR  486 (582)
T ss_pred             HhcCeEEEcCCCcc-cc--ccHHHHHh-----ccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence             0112235555432 11  13322221     12101223344444544443321         1    12358999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ||+++++++..+|+++|+|||+..+|+...+.+.+.++.      .|+++|+.+
T Consensus       487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~  540 (582)
T 3b5x_A          487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS  540 (582)
T ss_pred             HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence            999999999999999999999999999888777777652      377888764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.88  E-value=7.9e-24  Score=205.03  Aligned_cols=173  Identities=13%  Similarity=0.073  Sum_probs=112.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      .++++||++.|++..  ..+|+|+||++++||++||+||||||||||+++|+|++.   |++|++ +++....   +   
T Consensus       339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~  413 (578)
T 4a82_A          339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL  413 (578)
T ss_dssp             CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            589999999997522  236799999999999999999999999999999999993   445542 2221000   0   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCC----cCCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~~S~g~~~  215 (270)
                       ....+++++... +.  .+..++.     .+|.+. ...+...+.++....         +.+    .....+|+||+|
T Consensus       414 r~~i~~v~Q~~~l-~~--~tv~eni-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q  484 (578)
T 4a82_A          414 RNQIGLVQQDNIL-FS--DTVKENI-----LLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ  484 (578)
T ss_dssp             HHTEEEECSSCCC-CS--SBHHHHH-----GGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred             hhheEEEeCCCcc-Cc--ccHHHHH-----hcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence             011223333321 11  1222211     122221 122333333332221         111    123479999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      |+++++++..+|+++|+|||+..+|+...+.+.+.++      ..|+++|+.+.
T Consensus       485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~  538 (578)
T 4a82_A          485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST  538 (578)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred             HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            9999999999999999999999999987777777664      33778887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.88  E-value=1.4e-23  Score=186.99  Aligned_cols=162  Identities=12%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      +.++++||++.+.      .+|+++||++++|++++|+||||||||||+|+|+|++.   |++|++ +++     ..+ +
T Consensus        39 ~~l~~~~l~~~~~------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~-~  103 (290)
T 2bbs_A           39 DSLSFSNFSLLGT------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS-F  103 (290)
T ss_dssp             -----------CC------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEE-E
T ss_pred             ceEEEEEEEEcCc------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEE-E
Confidence            4589999998541      26799999999999999999999999999999999984   556653 222     122 2


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCChhhhhh
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~rv~~~~  221 (270)
                      ++++... +.  .++.++.    .  +..  .........++.+..         +.    ......+|+||+||+++++
T Consensus       104 v~Q~~~l-~~--~tv~enl----~--~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr  172 (290)
T 2bbs_A          104 CSQNSWI-MP--GTIKENI----I--GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  172 (290)
T ss_dssp             ECSSCCC-CS--SBHHHHH----H--TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred             EeCCCcc-Cc--ccHHHHh----h--Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence            4444321 11  1332222    1  221  111122222222211         10    1124689999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHh-hc------cceEEeccccc
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKCYATSFKET  263 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~-~~------~~i~v~~~~~~  263 (270)
                      ++..+++++|+|||+..+|+..++.+.+. +.      ..|+++|+.+.
T Consensus       173 aL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~  221 (290)
T 2bbs_A          173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH  221 (290)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred             HHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence            99999999999999999999999999885 32      24777777643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.88  E-value=1.6e-23  Score=203.06  Aligned_cols=175  Identities=13%  Similarity=0.090  Sum_probs=118.1

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----  149 (270)
                      ..++++||++.|++..  ..+|+|+||++++||++||+||||||||||+++|+|++.   |++|++ +++.....     
T Consensus       340 ~~i~~~~v~~~y~~~~--~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b60_A          340 GDLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS  414 (582)
T ss_dssp             CCEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred             CcEEEEEEEEEcCCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence            3599999999997421  226799999999999999999999999999999999994   666663 33311100     


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---------C----CcCCCCCCcccC
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG  214 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---------~----~~~~~~~S~g~~  214 (270)
                        ....+++++... +.  .+..++..     ++.....+.+.+.+.++.++..         .    ......+|+||+
T Consensus       415 ~~~~i~~v~Q~~~l-~~--~tv~eni~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~  486 (582)
T 3b60_A          415 LRNQVALVSQNVHL-FN--DTVANNIA-----YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR  486 (582)
T ss_dssp             HHHTEEEECSSCCC-CS--SBHHHHHH-----TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred             HHhhCeEEccCCcC-CC--CCHHHHHh-----ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence              012234544432 11  13322221     1210122334444555443321         1    123458999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET  263 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~  263 (270)
                      ||+++++++..+|+++|+|||+..+|+...+.+.+.++.      .|+++|+.+.
T Consensus       487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~  541 (582)
T 3b60_A          487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST  541 (582)
T ss_dssp             HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred             HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence            999999999999999999999999999887777776652      3788887653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=1.4e-23  Score=203.57  Aligned_cols=168  Identities=17%  Similarity=0.081  Sum_probs=113.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++..  ..+|+|+||++++||++||+||||||||||+++|+|++                +|+.|. |.
T Consensus       341 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~----------------~~~~G~-i~  401 (587)
T 3qf4_A          341 SVSFENVEFRYFENT--DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI----------------DPERGR-VE  401 (587)
T ss_dssp             CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS----------------CCSEEE-EE
T ss_pred             cEEEEEEEEEcCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc----------------cCCCcE-EE
Confidence            599999999996522  23679999999999999999999999999999999999                455555 55


Q ss_pred             cCCCCccccccCc--------ccCh----HHHHHhcCCC-CCccHHHHHHHHHhhc---------cCC----CcCCCCCC
Q 024225          157 MDGFHLYLSQLDA--------MEDP----KEAHARRGAP-WTFNPLLLLNCLKNLR---------NQG----SVYAPSFD  210 (270)
Q Consensus       157 ~dg~~~~~~~l~~--------~~~~----~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~----~~~~~~~S  210 (270)
                      +||.++.......        .+++    .-.+.+..+. .....+...+.++...         .+.    ......+|
T Consensus       402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS  481 (587)
T 3qf4_A          402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS  481 (587)
T ss_dssp             ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred             ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence            5555433210000        0000    0011121111 1122222222222211         111    22446899


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      +||+||+++++++..+|+++|+|||+..+|+...+.+.+.++      ..|+|+|+.+.
T Consensus       482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  540 (587)
T 3qf4_A          482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT  540 (587)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence            999999999999999999999999999999988888777765      33788887654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=1.6e-23  Score=203.67  Aligned_cols=161  Identities=15%  Similarity=0.107  Sum_probs=111.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++.   ..+|+|+||++++||++||+||||||||||+++|+|++                +|+.|. |.
T Consensus       354 ~i~~~~v~~~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~----------------~p~~G~-i~  413 (598)
T 3qf4_B          354 EIEFKNVWFSYDKK---KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY----------------DVDRGQ-IL  413 (598)
T ss_dssp             CEEEEEEECCSSSS---SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS----------------CCSEEE-EE
T ss_pred             eEEEEEEEEECCCC---CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc----------------CCCCeE-EE
Confidence            48999999999742   22679999999999999999999999999999999999                555565 55


Q ss_pred             cCCCCccccccCcccChHHHHHhcCC-CCCc------------------cHHHHHHHHHhhcc---------CCCc----
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTF------------------NPLLLLNCLKNLRN---------QGSV----  204 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~------------------~~~~~~~~l~~l~~---------~~~~----  204 (270)
                      +||.++...      .....++..++ +++.                  +.+...+.++....         +.+.    
T Consensus       414 ~~g~~i~~~------~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~  487 (598)
T 3qf4_B          414 VDGIDIRKI------KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD  487 (598)
T ss_dssp             ETTEEGGGS------CHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred             ECCEEhhhC------CHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence            565543321      01112222332 1111                  11112222211111         1010    


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      ....+|+||+||+++++++..+|+++|+|||+..+|+...+.+.+.+.      ..|+|+|+.+.
T Consensus       488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~  552 (598)
T 3qf4_B          488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT  552 (598)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            114799999999999999999999999999999999987777777665      34788887653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.84  E-value=2.4e-21  Score=188.33  Aligned_cols=169  Identities=15%  Similarity=0.072  Sum_probs=122.6

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++|+++.|++    + .|++++|++++||++||+||||||||||+|+|+|++.   |++|++.-.    ...+ ++
T Consensus       356 ~~l~~~~l~~~~~~----~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~----~~i~-~v  422 (607)
T 3bk7_A          356 TLVEYPRLVKDYGS----F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD----LTVA-YK  422 (607)
T ss_dssp             EEEEECCEEEECSS----C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC----CCEE-EE
T ss_pred             eEEEEeceEEEecc----e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe----eEEE-EE
Confidence            46999999999975    2 4688999999999999999999999999999999986   888885321    1233 36


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      +++....  ..+++.+........ ..   .+.....++++.+++..  +..+..+|+||+||++++.++..++++||+|
T Consensus       423 ~Q~~~~~--~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD  496 (607)
T 3bk7_A          423 PQYIKAE--YEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD  496 (607)
T ss_dssp             CSSCCCC--CSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             ecCccCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            6554321  224443322211000 00   12234566777777653  4566799999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ||+..||...+..+.++++        ..|+|+||.+.
T Consensus       497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  534 (607)
T 3bk7_A          497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  534 (607)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999999987777777665        23788888654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.84  E-value=1.4e-21  Score=187.45  Aligned_cols=172  Identities=13%  Similarity=0.068  Sum_probs=118.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++++++.|++.     .+..++|++++||++||+||||||||||+|+|+|+++   |++|++....   ...+. +
T Consensus       268 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~---~~i~~-~  335 (538)
T 3ozx_A          268 TKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK---QILSY-K  335 (538)
T ss_dssp             EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC---CCEEE-E
T ss_pred             ceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC---eeeEe-e
Confidence            468999999999762     3577799999999999999999999999999999995   7777753211   11122 3


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      .++-..  ....++.++....  ...... .......++++.+.+.  .+.++..+||||+||++++.++..+|++||+|
T Consensus       336 ~q~~~~--~~~~tv~~~l~~~--~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD  410 (538)
T 3ozx_A          336 PQRIFP--NYDGTVQQYLENA--SKDALS-TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD  410 (538)
T ss_dssp             CSSCCC--CCSSBHHHHHHHH--CSSTTC-TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             chhccc--ccCCCHHHHHHHh--hhhccc-hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            333211  1113333322221  111111 1123344555555543  35567799999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ||+..||...+..+.+++.        ..|+|+||.+..
T Consensus       411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~  449 (538)
T 3ozx_A          411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH  449 (538)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            9999999987777666664        237888887543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.84  E-value=2.6e-21  Score=185.88  Aligned_cols=169  Identities=15%  Similarity=0.058  Sum_probs=121.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++|+++.|++    + .+++++|++++||++||+||||||||||+|+|+|+++   |++|++..    ....+ ++
T Consensus       286 ~~l~~~~l~~~~~~----~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~-~v  352 (538)
T 1yqt_A          286 TLVTYPRLVKDYGS----F-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVA-YK  352 (538)
T ss_dssp             EEEEECCEEEEETT----E-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEE-EE
T ss_pred             eEEEEeeEEEEECC----E-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEE-EE
Confidence            46999999999975    2 4688999999999999999999999999999999985   88888543    11233 36


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      .++....  ..+++.+....... .+.   .+.....++++.+.+..  +..+..+|+|++||++++.++..++++||+|
T Consensus       353 ~Q~~~~~--~~~tv~~~~~~~~~-~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD  426 (538)
T 1yqt_A          353 PQYIKAD--YEGTVYELLSKIDA-SKL---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD  426 (538)
T ss_dssp             CSSCCCC--CSSBHHHHHHHHHH-HHH---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             ecCCcCC--CCCcHHHHHHhhhc-cCC---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            6654321  22344222211100 001   12234455666665542  4556799999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225          234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKET  263 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~  263 (270)
                      ||+..||...++.+.++++        ..|+|+||.+.
T Consensus       427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~  464 (538)
T 1yqt_A          427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  464 (538)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999999988777777654        23788888754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.82  E-value=2.3e-21  Score=202.44  Aligned_cols=162  Identities=17%  Similarity=0.128  Sum_probs=111.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++.. ...+|+|+||++++||++||+||||||||||+++|+|++                +|+.|. |.
T Consensus       387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~----------------~~~~G~-i~  448 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY----------------DPLDGM-VS  448 (1284)
T ss_dssp             CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS----------------CCSEEE-EE
T ss_pred             eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EE
Confidence            489999999997532 233779999999999999999999999999999999999                455555 55


Q ss_pred             cCCCCccccc-------------------cCcccChHHHHHhcCCCCCccHHHHHHHH---------HhhccCCC----c
Q 024225          157 MDGFHLYLSQ-------------------LDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQGS----V  204 (270)
Q Consensus       157 ~dg~~~~~~~-------------------l~~~~~~~~~~~~~g~~~~~~~~~~~~~l---------~~l~~~~~----~  204 (270)
                      +||.++....                   .+..+|..     +|.+ ....+.+.+.+         +.+..+.+    .
T Consensus       449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~-----~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~  522 (1284)
T 3g5u_A          449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR-----YGRE-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE  522 (1284)
T ss_dssp             ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHH-----HHCS-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred             ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHh-----cCCC-CCCHHHHHHHHHHhCcHHHHHhccccccccccC
Confidence            5554332100                   12222111     1111 11222222222         22222222    2


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      ....+||||+||+++++++..+++++|+|||+..+|....+.+.+.++      ..|+|+|+.+
T Consensus       523 ~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~  586 (1284)
T 3g5u_A          523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS  586 (1284)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence            344899999999999999999999999999999999987777776664      3478888764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.82  E-value=3.2e-21  Score=194.51  Aligned_cols=180  Identities=13%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++||++.|++..  ..+|+|+||++++|+++||+||||||||||+|+|+|++.   |++|++..++.  ...+. +
T Consensus       670 ~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~--~~I~y-v  741 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHEN--CRIAY-I  741 (986)
T ss_dssp             EEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTT--CCEEE-E
T ss_pred             ceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCc--cceEe-e
Confidence            4799999999997521  226799999999999999999999999999999999985   77777422110  00010 1


Q ss_pred             ecCC-----------------------CCc--------------------------------------------------
Q 024225          156 PMDG-----------------------FHL--------------------------------------------------  162 (270)
Q Consensus       156 ~~dg-----------------------~~~--------------------------------------------------  162 (270)
                      .++.                       .+.                                                  
T Consensus       742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~  821 (986)
T 2iw3_A          742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF  821 (986)
T ss_dssp             CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence            1100                       000                                                  


Q ss_pred             -----------cccccCcccCh--------HHH-----------HHhcCCCCCccHHHHHHHHHhhccCC----CcCCCC
Q 024225          163 -----------YLSQLDAMEDP--------KEA-----------HARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPS  208 (270)
Q Consensus       163 -----------~~~~l~~~~~~--------~~~-----------~~~~g~~~~~~~~~~~~~l~~l~~~~----~~~~~~  208 (270)
                                 ....++..++.        ...           ....|.........+.++++.+++..    +..+..
T Consensus       822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~  901 (986)
T 2iw3_A          822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG  901 (986)
T ss_dssp             EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred             hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence                       00000000000        000           00112222223455677888887753    345679


Q ss_pred             CCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEeccccc
Q 024225          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKET  263 (270)
Q Consensus       209 ~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~~  263 (270)
                      |||||+||+.++.++..++++||+|||+..||......+.+.+..    .|+++||.+.
T Consensus       902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~  960 (986)
T 2iw3_A          902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEF  960 (986)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHH
T ss_pred             cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence            999999999999999999999999999999999888888888774    3788887643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.82  E-value=3.8e-21  Score=200.77  Aligned_cols=174  Identities=16%  Similarity=0.119  Sum_probs=117.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|++... ..+|+|+||+|++||++||+||||||||||+++|+|++.   |++|++ +++...        
T Consensus      1030 ~i~~~~v~~~y~~~~~-~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPS-IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp             CEEEEEEEBCCSCGGG-CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred             cEEEEEEEEECCCCCC-CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence            4899999999975321 236799999999999999999999999999999999994   666663 333211        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhcc---------CCCc----CCCCCCccc
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV  213 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~  213 (270)
                      +...+ ++++|.... .  .+..+|.     .++.+ .......+.+.++....         +.+.    ....+||||
T Consensus      1106 r~~i~-~v~Q~~~l~-~--~ti~eNi-----~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A         1106 RAQLG-IVSQEPILF-D--CSIAENI-----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp             TTSCE-EEESSCCCC-S--SBHHHHH-----TCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred             HhceE-EECCCCccc-c--ccHHHHH-----hccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence            11122 355554321 1  1221111     12221 11223333333332221         1111    234799999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      +||+++++++..++++||+|||+..+|....+.+.+.++      ..|+|+|+.++
T Consensus      1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A         1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp             HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence            999999999999999999999999999988888777775      34788888765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.82  E-value=6.7e-22  Score=192.18  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=109.6

Q ss_pred             ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc----------CCCCCC---
Q 024225           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQVK---  147 (270)
Q Consensus        81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~----------~~~~~~---  147 (270)
                      +||++.|++.   ..++.++| ++++||++||+||||||||||+|+|+|++.   |++|++          +.+...   
T Consensus        95 ~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~~~~~~~G~~~~~~  167 (607)
T 3bk7_A           95 EDCVHRYGVN---AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDNVIRAFRGNELQNY  167 (607)
T ss_dssp             GSEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHHHHHHTTTSTHHHH
T ss_pred             CCeEEEECCC---CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccchhhheeCCEehhhh
Confidence            8888888652   13679999 999999999999999999999999999985   777763          111100   


Q ss_pred             -------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhh
Q 024225          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE  218 (270)
Q Consensus       148 -------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~  218 (270)
                             .-..+. +.+. .... +... ...........     .....+.++++.+++..  +..+..+|+||+||++
T Consensus       168 ~~~~~~~~~~i~~-~~q~-~~~~-~~~~-~~tv~e~l~~~-----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva  238 (607)
T 3bk7_A          168 FERLKNGEIRPVV-KPQY-VDLL-PKAV-KGKVRELLKKV-----DEVGKFEEVVKELELENVLDRELHQLSGGELQRVA  238 (607)
T ss_dssp             HHHHHHTSCCCEE-ECSC-GGGG-GGTC-CSBHHHHHHHT-----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH
T ss_pred             hhhhhhhhcceEE-eech-hhhc-hhhc-cccHHHHhhhh-----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH
Confidence                   000111 1110 0000 0000 00011111110     01123456777777653  4566799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ++.++..+|++||+|||+..||+..+..+.+++.       ..|+|+||.+.
T Consensus       239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~  290 (607)
T 3bk7_A          239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV  290 (607)
T ss_dssp             HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence            9999999999999999999999987666666665       34788888653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.82  E-value=1e-21  Score=176.96  Aligned_cols=157  Identities=24%  Similarity=0.350  Sum_probs=122.0

Q ss_pred             cccccceecCCCe------EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCc
Q 024225           96 PTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA  169 (270)
Q Consensus        96 ~l~~isl~i~~ge------ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~  169 (270)
                      ++.+++..+..+.      ++||+||||||||||+++|++++.. +++          .+ ...++.+|+++.....+..
T Consensus        75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~----------~~-~v~~i~~D~f~~~~~~l~~  142 (321)
T 3tqc_A           75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPD----------HP-NVEVITTDGFLYSNAKLEK  142 (321)
T ss_dssp             HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STT----------CC-CEEEEEGGGGBCCHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCC----------CC-eEEEEeecccccchhhhhh
Confidence            5566776665555      9999999999999999999999841 111          12 2345899998765432211


Q ss_pred             ccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh------h
Q 024225          170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------G  242 (270)
Q Consensus       170 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe------~  242 (270)
                          .....++|++..++...+.+.++.+..+. .+..|.||++..+++.........++++|+||++++.++      .
T Consensus       143 ----~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~  218 (321)
T 3tqc_A          143 ----QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQ  218 (321)
T ss_dssp             ----TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSS
T ss_pred             ----HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccc
Confidence                11224578889999999999999999998 789999999999988655555678999999999999986      2


Q ss_pred             hHHHHHHhhccceEEeccccchhhcc
Q 024225          243 VWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       243 ~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      .|..+.+++|++|||+++.++++.|+
T Consensus       219 ~~~~l~~~~D~~I~Vda~~d~~~~R~  244 (321)
T 3tqc_A          219 LQVFVSDFFDFSLFVDAQAQVIQKWY  244 (321)
T ss_dssp             CCCCGGGGCSEEEEEECCHHHHHHHH
T ss_pred             hhhhhhhhcCeEEEEECCHHHHHHHH
Confidence            34458899999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.82  E-value=9.8e-22  Score=188.77  Aligned_cols=169  Identities=15%  Similarity=0.058  Sum_probs=109.4

Q ss_pred             EEe-ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc----------CCCCC
Q 024225           78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV  146 (270)
Q Consensus        78 l~~-~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~----------~~~~~  146 (270)
                      .++ +||+|.|++.   ..++.++| ++++||++||+||||||||||+|+|+|++.   |++|++          +++..
T Consensus        21 ~~~~~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~   93 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN---AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE   93 (538)
T ss_dssp             ---CCCEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred             hhHhcCcEEEECCc---cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence            344 5899999752   23679999 999999999999999999999999999985   777763          11110


Q ss_pred             C----------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccC
Q 024225          147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG  214 (270)
Q Consensus       147 ~----------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~  214 (270)
                      .          .-..+. +.+.-. .. +.... ...........     ......++++.+++..  +.++..+|+||+
T Consensus        94 ~~~~~~~~~~~~~~~~~-~~q~~~-~~-~~~~~-~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek  164 (538)
T 1yqt_A           94 LQNYFEKLKNGEIRPVV-KPQYVD-LI-PKAVK-GKVIELLKKAD-----ETGKLEEVVKALELENVLEREIQHLSGGEL  164 (538)
T ss_dssp             HHHHHHHHHTTSCCCEE-ECSCGG-GS-GGGCC-SBHHHHHHHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred             HHHHHHHHHHHhhhhhh-hhhhhh-hc-chhhh-ccHHHHHhhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence            0          000111 111100 00 00000 00111111000     1123456777777653  456679999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      ||++++.++..+|++||+|||+..||+..++.+.+++.       ..|+|+|+.+
T Consensus       165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999986666666654       3488888864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.81  E-value=2.3e-21  Score=202.88  Aligned_cols=172  Identities=15%  Similarity=0.106  Sum_probs=116.0

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------  147 (270)
                      .++++||++.|++.. ...+|+|+||+|++||.|||+||||||||||+++|.|++.   |++|++ +|+.-.        
T Consensus      1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred             eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence            489999999997632 2336799999999999999999999999999999999993   555542 222100        


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhc---------cCCCcC----CCCCCccc
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGV  213 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~  213 (270)
                      +.. ..+|++|.+-...   +..+|     -.+|. +.+...+.+.+.++...         .|.+..    ...+|+||
T Consensus      1152 R~~-i~~V~Qdp~LF~g---TIreN-----I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A         1152 RSQ-IAIVSQEPTLFDC---SIAEN-----IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp             HTT-EEEECSSCCCCSE---EHHHH-----HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred             Hhh-eEEECCCCEeeCc---cHHHH-----HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence            011 1224444432111   11111     12333 33344455555544333         222322    24799999


Q ss_pred             CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK  261 (270)
Q Consensus       214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~  261 (270)
                      +||+++++++..++++||+||++..+|...-+.+.+.++.      .|.|+|..
T Consensus      1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A         1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred             HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence            9999999999999999999999999999877777777763      36777654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.81  E-value=5.6e-21  Score=199.99  Aligned_cols=162  Identities=16%  Similarity=0.138  Sum_probs=114.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .++++||++.|++... ..+|+|+||+|++|+.+||+||||||||||+++|.|++                .|..|. |.
T Consensus       415 ~I~~~nvsF~Y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~----------------~~~~G~-I~  476 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPD-VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY----------------DVLKGK-IT  476 (1321)
T ss_dssp             CEEEEEEEECCSSSTT-SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS----------------CCSEEE-EE
T ss_pred             cEEEEEeeeeCCCCCC-CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc----------------ccccCc-cc
Confidence            4899999999976322 33679999999999999999999999999999999999                556666 66


Q ss_pred             cCCCCccccc-------------------cCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccCCCc----
Q 024225          157 MDGFHLYLSQ-------------------LDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----  204 (270)
Q Consensus       157 ~dg~~~~~~~-------------------l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~----  204 (270)
                      +||.++....                   -+..+|     -.+|.+. .+.+.+.+.++         .+-.|.+.    
T Consensus       477 idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN-----I~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe  550 (1321)
T 4f4c_A          477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN-----ISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGD  550 (1321)
T ss_dssp             ETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHH-----HHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred             CCCccchhccHHHHhhcccccCCcceeeCCchhHH-----Hhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence            6665443211                   111111     1233322 23344444333         33333332    


Q ss_pred             CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      ..-.+||||+||+++++++..+++++|+||++..+|....+.+.+.++      ..|.|+|...
T Consensus       551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls  614 (1321)
T 4f4c_A          551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS  614 (1321)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred             CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence            234799999999999999999999999999999999876666666554      3477777653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.80  E-value=3.8e-20  Score=160.35  Aligned_cols=156  Identities=21%  Similarity=0.350  Sum_probs=101.1

Q ss_pred             ccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (270)
Q Consensus        95 ~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~  173 (270)
                      .+|+|+||++++|+++||+||||||||||+++|+|++.       .+ ++ . .. ....++.+|+++  . .++..++.
T Consensus        13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-~-~~-~~i~~v~~d~~~--~-~l~~~~~~   79 (245)
T 2jeo_A           13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-Q-RQ-RKVVILSQDRFY--K-VLTAEQKA   79 (245)
T ss_dssp             ----------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-G-GG-CSEEEEEGGGGB--C-CCCHHHHH
T ss_pred             eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-c-cC-CceEEEeCCcCc--c-ccCHhHhh
Confidence            37899999999999999999999999999999999872       11 11 0 01 122347777532  1 13332222


Q ss_pred             HHHHHhcCC--CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhh
Q 024225          174 KEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (270)
Q Consensus       174 ~~~~~~~g~--~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~  251 (270)
                      ......+++  +..++...+.+.++.+.......++.||+|+++|+.. .++..+++++|+||+.++.++    .+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~  154 (245)
T 2jeo_A           80 KALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMF  154 (245)
T ss_dssp             HHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTC
T ss_pred             hhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhc
Confidence            111111222  2234556667777777777778889999999999976 455667899999999888884    567778


Q ss_pred             ccceEEeccccchhhcc
Q 024225          252 DEKCYATSFKETYFNRE  268 (270)
Q Consensus       252 ~~~i~v~~~~~~~~~r~  268 (270)
                      +.+|||+++.+.++.|+
T Consensus       155 ~~~i~v~th~~~~~~r~  171 (245)
T 2jeo_A          155 HLRLFVDTDSDVRLSRR  171 (245)
T ss_dssp             SEEEEEECCHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHH
Confidence            89999999988887664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.1e-20  Score=183.59  Aligned_cols=172  Identities=15%  Similarity=0.072  Sum_probs=107.7

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH  161 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~  161 (270)
                      ++++.|+...   ..+.+++ .+++||++||+||||||||||+|+|+|++.   |++|++.....   .....-.++|..
T Consensus        82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~---~~~~~~~~~g~~  151 (608)
T 3j16_B           82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPE---WQEIIKYFRGSE  151 (608)
T ss_dssp             TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSC---HHHHHHHTTTST
T ss_pred             CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccc---hhhhhheecChh
Confidence            4566665422   1345544 589999999999999999999999999985   77776421100   000000111111


Q ss_pred             cccc---------------c-cC-----cccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhh
Q 024225          162 LYLS---------------Q-LD-----AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE  218 (270)
Q Consensus       162 ~~~~---------------~-l~-----~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~  218 (270)
                      +...               + ..     ............+...........++++.+++..  +..+..+|+||+||++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~  231 (608)
T 3j16_B          152 LQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA  231 (608)
T ss_dssp             HHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred             hhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence            1000               0 00     0000000000011111123355677788877753  4567899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ++.++..++++||+|||+..||+.....+.++++       ..|+|+|+.+.
T Consensus       232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~  283 (608)
T 3j16_B          232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV  283 (608)
T ss_dssp             HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred             HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999999999999999999999987776666665       24888888754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.3e-19  Score=176.01  Aligned_cols=167  Identities=16%  Similarity=0.140  Sum_probs=113.9

Q ss_pred             ccchhhhhhhhcccccccccceecCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        81 ~~l~~~y~~~~~~v~~l~~isl~i~~g-----eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      +++.+.|++..   .++++++|++.+|     |++||+||||||||||+++|+|+++   |++|+...    ....+ ++
T Consensus       350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~-~~  418 (608)
T 3j16_B          350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVS-MK  418 (608)
T ss_dssp             SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEE-EE
T ss_pred             cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEE-Ee
Confidence            56777786532   2568999999998     7899999999999999999999996   77776221    11122 24


Q ss_pred             ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      .++-...+  ..++.+   ....... ....+.....++++.+.+.  .+..+..+||||+||++++.+++.++++||+|
T Consensus       419 ~q~~~~~~--~~tv~e---~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          419 PQKIAPKF--PGTVRQ---LFFKKIR-GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             CSSCCCCC--CSBHHH---HHHHHCS-STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             cccccccC--CccHHH---HHHHHhh-cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            43321111  122222   1111111 1112334455677777665  35677799999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ||+..||...+..+.+++.        ..|+|+||.+..
T Consensus       493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~  531 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA  531 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            9999999877766665554        237888887554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.79  E-value=1.3e-20  Score=159.38  Aligned_cols=147  Identities=30%  Similarity=0.467  Sum_probs=109.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      .++|+++||+||||||||||+++|+|++.   ++ |         +..|. +.+||+++.........    .....+.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~~~~~~~----~~~~~~~~   80 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNRLLEPRG----LLPRKGAP   80 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHHHHGGGT----CGGGTTSG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHHHHHHhc----ccccCCCC
Confidence            57899999999999999999999999993   10 0         24565 99999876432111100    01134566


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET  263 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~  263 (270)
                      ..++...+.+++..+..++.+..|.|+++...+......+...++++|+|++++++||+.|..+.+.+|..|||+++.++
T Consensus        81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~  160 (208)
T 3c8u_A           81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMAD  160 (208)
T ss_dssp             GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHH
T ss_pred             chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHH
Confidence            67777777788888888877777777766655544433343345899999999999999999999999999999999998


Q ss_pred             hhhcc
Q 024225          264 YFNRE  268 (270)
Q Consensus       264 ~~~r~  268 (270)
                      ++.|.
T Consensus       161 ~~~R~  165 (208)
T 3c8u_A          161 LEARL  165 (208)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.79  E-value=1.2e-20  Score=169.18  Aligned_cols=168  Identities=20%  Similarity=0.264  Sum_probs=118.8

Q ss_pred             eEEeccchhhhhhhhcccccccccceec-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ  137 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i-------------------~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~  137 (270)
                      ++++++|++.|..      +++++++.+                   ++|+++||+||||||||||+++|+|++..    
T Consensus        37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~----  106 (308)
T 1sq5_A           37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR----  106 (308)
T ss_dssp             TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT----
T ss_pred             ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh----
Confidence            4788999999964      568889888                   89999999999999999999999999820    


Q ss_pred             CcccCCCCCCCCCceE--EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC-cCCCCCCcccC
Q 024225          138 KASSFDSQVKPPDVAT--VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVG  214 (270)
Q Consensus       138 ~G~~~~~~~~~p~~g~--~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~  214 (270)
                                .|+.|.  ++.+||++....   ..+..... ...+.+..++.......+..+..+.. +..|.|+....
T Consensus       107 ----------~~~~G~i~vi~~d~~~~~~~---~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~  172 (308)
T 1sq5_A          107 ----------WPEHRRVELITTDGFLHPNQ---VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY  172 (308)
T ss_dssp             ----------STTCCCEEEEEGGGGBCCHH---HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTT
T ss_pred             ----------CCCCCeEEEEecCCccCcHH---HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceeccccccccc
Confidence                      155454  345588763210   00000001 12344445566666677777777666 77899998888


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChh------hHHHHHHhhccceEEeccccchhhcc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~------~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      +++.........++++|+||++++.++.      .+..+.+++|..|||+++.++++.|+
T Consensus       173 ~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~  232 (308)
T 1sq5_A          173 DVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWY  232 (308)
T ss_dssp             EECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHH
T ss_pred             CcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHH
Confidence            8876544444568999999999998720      01246788999999999998877664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.78  E-value=1.7e-19  Score=182.06  Aligned_cols=163  Identities=12%  Similarity=0.040  Sum_probs=113.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccCCCCCCCCCceEEe
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~g-ll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      .+...|+++.|++..    +|+|+||++++|+++||+||||||||||+|+|+| .+      .|.    .  .+....++
T Consensus       435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i------~g~----~--~~~~~~~~  498 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV------DGF----P--TQEECRTV  498 (986)
T ss_dssp             EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS------TTC----C--CTTTSCEE
T ss_pred             eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc------CCC----c--cccceeEE
Confidence            466669999998633    6799999999999999999999999999999995 21      010    0  00111112


Q ss_pred             ecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225          156 PMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (270)
Q Consensus       156 ~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilI  231 (270)
                      ++... ......+++.++...  ...+    . ...+.++++.+++.   .+.++..||+||+||++++.++..++++||
T Consensus       499 ~v~q~~~~~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL  571 (986)
T 2iw3_A          499 YVEHDIDGTHSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL  571 (986)
T ss_dssp             ETTCCCCCCCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred             EEcccccccccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            22211 011112333332211  1111    1 45567788888874   245667999999999999999999999999


Q ss_pred             EeCCCCCCChhhHHHHHHhhc----cceEEecccc
Q 024225          232 VDGNYLFLDGGVWKDVSSMFD----EKCYATSFKE  262 (270)
Q Consensus       232 ld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~~  262 (270)
                      +|||+..||....+.+.+++.    ..|+++|+.+
T Consensus       572 LDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~  606 (986)
T 2iw3_A          572 LDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV  606 (986)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred             EECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            999999999988888888876    3477777753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.77  E-value=5.5e-20  Score=166.95  Aligned_cols=173  Identities=32%  Similarity=0.495  Sum_probs=137.7

Q ss_pred             cccccceecCCCeE--EEEECCCCCCHHHHHHHHHHHhcccC--------------------------------------
Q 024225           96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW--------------------------------------  135 (270)
Q Consensus        96 ~l~~isl~i~~gei--vgL~GpnGsGKSTLlk~L~gll~~~~--------------------------------------  135 (270)
                      +++.+++.+++|++  ++|+|++||||||++++|++.+.--+                                      
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i   90 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM   90 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence            45788888999988  99999999999999999999864211                                      


Q ss_pred             -CCCcccCC----------------CC-C-------------------------CC---C---CceEEeecCCCCccccc
Q 024225          136 -PQKASSFD----------------SQ-V-------------------------KP---P---DVATVLPMDGFHLYLSQ  166 (270)
Q Consensus       136 -~~~G~~~~----------------~~-~-------------------------~~---p---~~g~~i~~dg~~~~~~~  166 (270)
                       ...|+.+.                +. .                         ..   +   ....++++|||++.+..
T Consensus        91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~  170 (359)
T 2ga8_A           91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC  170 (359)
T ss_dssp             HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred             HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence             00111000                00 0                         01   1   14567899999999888


Q ss_pred             cCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-----------------------------CCcCCCCCCcccCChh
Q 024225          167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV  217 (270)
Q Consensus       167 l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~~S~g~~~rv  217 (270)
                      ++.+.++...+.++|.|+++|...+..+++.|..+                             ..++.|.|++...+++
T Consensus       171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~  250 (359)
T 2ga8_A          171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT  250 (359)
T ss_dssp             HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred             HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence            87777777778899999999999998888887665                             4678899999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEeccccchhhcc
Q 024225          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYATSFKETYFNRE  268 (270)
Q Consensus       218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~~~~~~~~~r~  268 (270)
                      .....+...++++|+|+.++++++..|..+.+++|     +.|||+++.++++.|.
T Consensus       251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rl  306 (359)
T 2ga8_A          251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERV  306 (359)
T ss_dssp             EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHH
T ss_pred             CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHH
Confidence            88877777789999999999999888999999999     8999999999988875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.77  E-value=3.5e-19  Score=175.17  Aligned_cols=70  Identities=13%  Similarity=0.072  Sum_probs=57.1

Q ss_pred             HHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCc--EEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       194 ~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~--ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      +++.+++.   .+.++..+|+||+||++++.++..+++  +||+|||+..||+...+.+.++++       ..|+|+||.
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            45666654   245677999999999999999998877  999999999999988888777775       348888887


Q ss_pred             cc
Q 024225          262 ET  263 (270)
Q Consensus       262 ~~  263 (270)
                      +.
T Consensus       265 ~~  266 (670)
T 3ux8_A          265 DT  266 (670)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.74  E-value=1.9e-19  Score=172.68  Aligned_cols=167  Identities=13%  Similarity=0.007  Sum_probs=101.5

Q ss_pred             cchhhhhhhhccccccccccee-cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC------------CCCCC-
Q 024225           82 CMDEVYDALAQRLLPTSALASN-VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQVK-  147 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~-i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~------------~~~~~-  147 (270)
                      +.++.|+...     ++-..+. +++||++||+||||||||||+|+|+|++.   |++|++.            .+... 
T Consensus         4 ~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i~   75 (538)
T 3ozx_A            4 EVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEIY   75 (538)
T ss_dssp             CEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred             CCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeHH
Confidence            4567776532     2222333 56899999999999999999999999985   7777641            11100 


Q ss_pred             -------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhh
Q 024225          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (270)
Q Consensus       148 -------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~  218 (270)
                             ....+. ...-++......+... ..........     ......++++.+.+.  .+..+..+|+||+||++
T Consensus        76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~  148 (538)
T 3ozx_A           76 NYFKELYSNELKI-VHKIQYVEYASKFLKG-TVNEILTKID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLL  148 (538)
T ss_dssp             HHHHHHHTTCCCE-EEECSCTTGGGTTCCS-BHHHHHHHHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred             HHHHHHhhcccch-hhccchhhhhhhhccC-cHHHHhhcch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence                   000010 1111110000000000 0000000000     011234566666654  34566799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      ++.++..+|++||+|||+..||+.....+.++++      ..|+|+|+.+.
T Consensus       149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~  199 (538)
T 3ozx_A          149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV  199 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence            9999999999999999999999977776666665      34888888743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.69  E-value=5.4e-18  Score=150.83  Aligned_cols=148  Identities=20%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH------HH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE------AH  177 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~------~~  177 (270)
                      -.++.+|||+|++|||||||++.|.+++...    |.       ....+.++.+|+++....   ..++..+      ..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g~-------~~~~~~iv~~D~f~~~~~---~~~~l~~~~~~~~l~   93 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----YG-------GEKSIGYASIDDFYLTHE---DQLKLNEQFKNNKLL   93 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH----HG-------GGSCEEEEEGGGGBCCHH---HHHHHHHHTTTCGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc----CC-------CCceEEEeccccccCChH---HHHHHhccccccchh
Confidence            4578999999999999999999999999410    00       012345349999876432   1111111      12


Q ss_pred             HhcCCCCCccHHHHHHHHHhhccC------CCcCCCCC----CcccCChhhhh--hhhccCCcEEEEeCCCCCCChhh--
Q 024225          178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSF----DHGVGDPVEDD--ILVGLQHKVVIVDGNYLFLDGGV--  243 (270)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~----S~g~~~rv~~~--~~l~~~~~ilIld~~~~~lDe~~--  243 (270)
                      ...|.+.+++...+.+.++.+..+      ..+..|.|    |+||++|++.+  ..+  ++++||+||+++++|+..  
T Consensus        94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~~~  171 (290)
T 1odf_A           94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPILQG  171 (290)
T ss_dssp             SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCCSC
T ss_pred             hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccchh
Confidence            235678889999999999999887      44445544    77889998875  344  899999999999999743  


Q ss_pred             --------------------HHH-HHHhhccc---eEEeccccchhhc
Q 024225          244 --------------------WKD-VSSMFDEK---CYATSFKETYFNR  267 (270)
Q Consensus       244 --------------------~~~-l~~~~~~~---i~v~~~~~~~~~r  267 (270)
                                          +.. +.+++|.+   |||+++.++.+.|
T Consensus       172 ~~~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~r  219 (290)
T 1odf_A          172 IENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYG  219 (290)
T ss_dssp             TTTCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHH
T ss_pred             hhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHH
Confidence                                111 34445666   9999988776654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.68  E-value=3.7e-17  Score=160.75  Aligned_cols=72  Identities=11%  Similarity=-0.012  Sum_probs=55.3

Q ss_pred             HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCC---cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225          192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT  258 (270)
Q Consensus       192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~---~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~  258 (270)
                      .+.++.+.+..   +.++..+|+||+||++++.++..++   ++||+|||+..||+...+.+.++++       ..|+|+
T Consensus       524 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vt  603 (670)
T 3ux8_A          524 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE  603 (670)
T ss_dssp             HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            34455555532   3456799999999999999997765   6999999999999987777777765       247888


Q ss_pred             ccccc
Q 024225          259 SFKET  263 (270)
Q Consensus       259 ~~~~~  263 (270)
                      ||.+.
T Consensus       604 Hd~~~  608 (670)
T 3ux8_A          604 HNLDV  608 (670)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            88764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.1e-19  Score=171.33  Aligned_cols=167  Identities=13%  Similarity=0.023  Sum_probs=104.7

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-c-c-CCCCCCCCCce
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDVA  152 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G-~-~-~~~~~~~p~~g  152 (270)
                      ++++++||++.|+          +++|++++|++++|+||||||||||+|+|+|++.   |++| + + +++.. ....+
T Consensus       117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i~  182 (460)
T 2npi_A          117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPIF  182 (460)
T ss_dssp             THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCSS
T ss_pred             chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCee
Confidence            4578889999885          5889999999999999999999999999999985   6677 5 4 23311 11111


Q ss_pred             EEeecCCCC-ccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhh--hccCCc
Q 024225          153 TVLPMDGFH-LYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHK  228 (270)
Q Consensus       153 ~~i~~dg~~-~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~--l~~~~~  228 (270)
                      . +.++... .....++..++. +... ..+.   ........+++.+++........+|+||+||++++.+  +..+++
T Consensus       183 ~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~  257 (460)
T 2npi_A          183 T-VPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ  257 (460)
T ss_dssp             S-CSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             e-eccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc
Confidence            1 1111100 000011222221 1000 0010   0001111223333333322356899999999999999  999999


Q ss_pred             E----EEEeC-CCCCCChhhHHHHHHhhc----cceEEecccc
Q 024225          229 V----VIVDG-NYLFLDGGVWKDVSSMFD----EKCYATSFKE  262 (270)
Q Consensus       229 i----lIld~-~~~~lDe~~~~~l~~~~~----~~i~v~~~~~  262 (270)
                      +    ||+|| |+..+|+. .+.+.++++    ..++|+|+.+
T Consensus       258 i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~  299 (460)
T 2npi_A          258 VRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET  299 (460)
T ss_dssp             HHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred             cCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence            9    99999 99999987 666666654    3478888766

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.67  E-value=7.1e-18  Score=138.42  Aligned_cols=124  Identities=15%  Similarity=0.049  Sum_probs=81.3

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHH------------HHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccc
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAA------------EVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ  166 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk------------~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~  166 (270)
                      |+||++++||+++|+||||||||||++            .+.|++                .++.+. ....+.      
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~----------------~~~~~~-~~~~~~------   57 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLM----------------SDDEND-QTVTGA------   57 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHH----------------CSSTTC-GGGHHH------
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHh----------------cCcccc-hhhHHH------
Confidence            689999999999999999999999999            455554                222111 000000      


Q ss_pred             cCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC---cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh-
Q 024225          167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-  242 (270)
Q Consensus       167 l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~---~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~-  242 (270)
                               ...          .........+..+..   -.....|+|++||++++.++..+++++++|||+..+|+. 
T Consensus        58 ---------~~~----------~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~  118 (171)
T 4gp7_A           58 ---------AFD----------VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN  118 (171)
T ss_dssp             ---------HHH----------HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred             ---------HHH----------HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence                     000          000011111222221   122345899999999999999999999999999999987 


Q ss_pred             ---------------hHHHHHHhhc-------cceEEeccccch
Q 024225          243 ---------------VWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       243 ---------------~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                                     .++.+.+++.       ..|+++|+.+..
T Consensus       119 ~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~  162 (171)
T 4gp7_A          119 KNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEV  162 (171)
T ss_dssp             HTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHH
T ss_pred             hcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHh
Confidence                           5566666654       238888887543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.66  E-value=8.6e-17  Score=135.45  Aligned_cols=138  Identities=24%  Similarity=0.344  Sum_probs=92.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      .++|+++||+||||||||||+++|+|++                .|. ..++.+|.+......++..+   .....++.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~----------------~~~-i~~v~~d~~~~~~~~~~~~~---~~~~~~~~~   62 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTL----------------GER-VALLPMDHYYKDLGHLPLEE---RLRVNYDHP   62 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHH----------------GGG-EEEEEGGGCBCCCTTSCHHH---HHHSCTTSG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHh----------------CCC-eEEEecCccccCcccccHHH---hcCCCCCCh
Confidence            5789999999999999999999999998                332 34588887654322222211   111112334


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCC--CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFK  261 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~--~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~  261 (270)
                      ...+...+.+.++.+..+.....|  .+|.|++.....   ....++++++||+++++||    ....+++..||+|++.
T Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~---~~~~~~~li~~~~ll~~de----~~~~~~d~~i~ld~~~  135 (211)
T 3asz_A           63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRT---PVRPAPVVILEGILVLYPK----ELRDLMDLKVFVDADA  135 (211)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCE---EECCCSEEEEESTTTTSSH----HHHTTCSEEEEEECCH
T ss_pred             hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeE---EeCCCcEEEEeehhhccCH----HHHHhcCEEEEEeCCH
Confidence            445666777788887776544333  567776532111   1124789999999999997    4566789999999999


Q ss_pred             cchhhcc
Q 024225          262 ETYFNRE  268 (270)
Q Consensus       262 ~~~~~r~  268 (270)
                      +.++.|+
T Consensus       136 ~~~~~r~  142 (211)
T 3asz_A          136 DERFIRR  142 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=7.7e-17  Score=136.73  Aligned_cols=140  Identities=17%  Similarity=0.096  Sum_probs=79.4

Q ss_pred             hhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCC------CCCCceEEeecC
Q 024225           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV------KPPDVATVLPMD  158 (270)
Q Consensus        85 ~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~------~~p~~g~~i~~d  158 (270)
                      |.|+...    +|+++    ++|++++|+||||||||||+++|+|+ .   |++|++.....      .....|. ++++
T Consensus         8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~   74 (208)
T 3b85_A            8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT   74 (208)
T ss_dssp             CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred             CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence            4565543    66884    89999999999999999999999999 6   88887521000      0000111 1111


Q ss_pred             CCCccccccCcccChHH-HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225          159 GFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (270)
Q Consensus       159 g~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~  237 (270)
                      ..    ..+.  ..... .....+.   .+...+.++++.            ..||+||++++.++..++++||+|||+.
T Consensus        75 ~~----enl~--~~~~~~~~~~~~~---~~~~~~~~~l~~------------glGq~qrv~lAraL~~~p~lllLDEPts  133 (208)
T 3b85_A           75 LN----EKID--PYLRPLHDALRDM---VEPEVIPKLMEA------------GIVEVAPLAYMRGRTLNDAFVILDEAQN  133 (208)
T ss_dssp             ---------C--TTTHHHHHHHTTT---SCTTHHHHHHHT------------TSEEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred             HH----HHHH--HHHHHHHHHHHHh---ccHHHHHHHHHh------------CCchHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            10    0000  00000 0000110   111223333332            1299999999999999999999999999


Q ss_pred             CCChhhHHHHHHhhcc-----ceEEecccc
Q 024225          238 FLDGGVWKDVSSMFDE-----KCYATSFKE  262 (270)
Q Consensus       238 ~lDe~~~~~l~~~~~~-----~i~v~~~~~  262 (270)
                      .    ..+.+.+++..     .+.++||.+
T Consensus       134 ~----~~~~l~~~l~~l~~g~tiivtHd~~  159 (208)
T 3b85_A          134 T----TPAQMKMFLTRLGFGSKMVVTGDIT  159 (208)
T ss_dssp             C----CHHHHHHHHTTBCTTCEEEEEEC--
T ss_pred             c----cHHHHHHHHHHhcCCCEEEEECCHH
Confidence            9    34444444432     233777764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.61  E-value=5.3e-17  Score=145.16  Aligned_cols=131  Identities=13%  Similarity=0.140  Sum_probs=87.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .|+++||++.|+ ..    +|+++||+|++|++++|+||||||||||+++|+|++.                   |.++.
T Consensus       101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~-------------------G~I~~  156 (305)
T 2v9p_A          101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG-------------------GSVLS  156 (305)
T ss_dssp             HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT-------------------CEEEC
T ss_pred             eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC-------------------ceEEE
Confidence            478899999997 32    6799999999999999999999999999999999972                   33222


Q ss_pred             cCCC--CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh-hccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225          157 MDGF--HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (270)
Q Consensus       157 ~dg~--~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~-l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld  233 (270)
                      ....  .++.  -+..+      .++.+..... ....+.++. +..+.+  ...+|+||+||   ++++..+|++||  
T Consensus       157 ~v~q~~~lf~--~ti~~------~ni~~~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl--  220 (305)
T 2v9p_A          157 FANHKSHFWL--ASLAD------TRAALVDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV--  220 (305)
T ss_dssp             GGGTTSGGGG--GGGTT------CSCEEEEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE--
T ss_pred             EecCcccccc--ccHHH------HhhccCcccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE--
Confidence            1111  1111  11111      0111111111 133344444 322222  56899999999   778888999999  


Q ss_pred             CCCCCCChhhHHHHHH
Q 024225          234 GNYLFLDGGVWKDVSS  249 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~  249 (270)
                        +..+|....+.+..
T Consensus       221 --Ts~LD~~~~~~i~~  234 (305)
T 2v9p_A          221 --TSNIDVQAEDRYLY  234 (305)
T ss_dssp             --EESSCSTTCGGGGG
T ss_pred             --ECCCCHHHHHHHHH
Confidence              99999866666543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.60  E-value=9.1e-16  Score=153.34  Aligned_cols=73  Identities=10%  Similarity=-0.016  Sum_probs=58.2

Q ss_pred             HHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEE
Q 024225          191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYA  257 (270)
Q Consensus       191 ~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v  257 (270)
                      ..++++.++++.   ...+..+|+|++||+.++.++..+   ++++|+|||+.+||....+.+.++++       ..|+|
T Consensus       710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvi  789 (842)
T 2vf7_A          710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV  789 (842)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            456677777654   345679999999999999999885   69999999999999987777777665       23778


Q ss_pred             eccccc
Q 024225          258 TSFKET  263 (270)
Q Consensus       258 ~~~~~~  263 (270)
                      +|+.+.
T Consensus       790 sHdl~~  795 (842)
T 2vf7_A          790 EHKMQV  795 (842)
T ss_dssp             CCCHHH
T ss_pred             cCCHHH
Confidence            888754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.58  E-value=4.1e-15  Score=149.45  Aligned_cols=72  Identities=11%  Similarity=-0.009  Sum_probs=57.0

Q ss_pred             HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225          192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT  258 (270)
Q Consensus       192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~  258 (270)
                      .++++.+++..   ...+..+|+|++||+.++.++..+   ++++|+|||+.+||...++.+.++++       ..|+++
T Consensus       826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis  905 (972)
T 2r6f_A          826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE  905 (972)
T ss_dssp             HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence            45667776654   345679999999999999999865   49999999999999987777776665       337888


Q ss_pred             ccccc
Q 024225          259 SFKET  263 (270)
Q Consensus       259 ~~~~~  263 (270)
                      |+.+.
T Consensus       906 Hdl~~  910 (972)
T 2r6f_A          906 HNLDV  910 (972)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            88764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.55  E-value=7.9e-17  Score=149.63  Aligned_cols=137  Identities=8%  Similarity=-0.016  Sum_probs=93.2

Q ss_pred             cccccceecCCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225           96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (270)
Q Consensus        96 ~l~~isl~i~~ge--------------------ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~  154 (270)
                      ++++++|++++|+                    ++||+||||||||||+|+|+|++.   |++|++ .++.... ..+. 
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~-  112 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH-  112 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence            6799999999999                    999999999999999999999986   889985 3332111 1233 


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-CcCCCCCCcc--cCChhhhhhhhcc------
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL------  225 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g--~~~rv~~~~~l~~------  225 (270)
                      ++.+..   .++++..+++...     .. .   ....+.++.+.+.. +..+ .+|+|  ++||+.++.++..      
T Consensus       113 v~q~~~---~~~ltv~D~~g~~-----~~-~---~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~  179 (413)
T 1tq4_A          113 PYKHPN---IPNVVFWDLPGIG-----ST-N---FPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFY  179 (413)
T ss_dssp             EEECSS---CTTEEEEECCCGG-----GS-S---CCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEE
T ss_pred             eccccc---cCCeeehHhhccc-----ch-H---HHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeE
Confidence            444432   1124444443221     01 1   12445566555543 2222 38998  9999999998888      


Q ss_pred             ----CCcEEEEeCCCCCCChhhHHHHHHh
Q 024225          226 ----QHKVVIVDGNYLFLDGGVWKDVSSM  250 (270)
Q Consensus       226 ----~~~ilIld~~~~~lDe~~~~~l~~~  250 (270)
                          +++++++|||+..+|+..++++.+.
T Consensus       180 lV~tkpdlllLDEPtsgLD~~~~~~l~~~  208 (413)
T 1tq4_A          180 FVRTKVDSDITNEADGEPQTFDKEKVLQD  208 (413)
T ss_dssp             EEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred             EEEecCcccccCcccccCCHHHHHHHHHH
Confidence                8899999999999998655554443

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.54  E-value=1.8e-15  Score=140.16  Aligned_cols=54  Identities=15%  Similarity=0.023  Sum_probs=46.8

Q ss_pred             CCcccCChhhhhhhhccCC--cEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       209 ~S~g~~~rv~~~~~l~~~~--~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      +|+||+||+.++.++..++  ++||+|||+..||+...+.+.+++..      .|+|+|+.+
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~  357 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ  357 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence            6999999999999998899  99999999999999888888777763      367777753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.52  E-value=2.3e-14  Score=144.31  Aligned_cols=74  Identities=9%  Similarity=0.007  Sum_probs=58.7

Q ss_pred             HHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceE
Q 024225          190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCY  256 (270)
Q Consensus       190 ~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~  256 (270)
                      ...++++.++++.   ...+..+||||+||+.++.++..+   ++++|+|||+.+||....+.+.++++       ..|+
T Consensus       784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv  863 (916)
T 3pih_A          784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV  863 (916)
T ss_dssp             HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            3456677777753   346679999999999999999765   47999999999999987777777765       3488


Q ss_pred             Eeccccc
Q 024225          257 ATSFKET  263 (270)
Q Consensus       257 v~~~~~~  263 (270)
                      |+|+.++
T Consensus       864 I~HdL~~  870 (916)
T 3pih_A          864 IEHNLDV  870 (916)
T ss_dssp             ECCCHHH
T ss_pred             EeCCHHH
Confidence            8888764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.45  E-value=2.8e-15  Score=123.97  Aligned_cols=55  Identities=11%  Similarity=0.019  Sum_probs=46.5

Q ss_pred             CCCCCCcccCChhhhhhh-----hccCCcEEEEeC--CCCCCChhhHHHHHHhhcc----ceEEec
Q 024225          205 YAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE----KCYATS  259 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~-----l~~~~~ilIld~--~~~~lDe~~~~~l~~~~~~----~i~v~~  259 (270)
                      ++..+|+||+||++++.+     +..+++++|+||  |+..+|+...+.+.++++.    .++++|
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H  138 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP  138 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence            445789999999999996     889999999999  9999999999988888863    345554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.44  E-value=1.4e-14  Score=129.39  Aligned_cols=139  Identities=11%  Similarity=0.025  Sum_probs=83.4

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHH
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~  177 (270)
                      .+++|++++|++++|+||||||||||++.|+|++                .|+.|. +.++|.+.++.  ...+......
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l----------------~~~~g~-V~l~g~d~~r~--~a~~ql~~~~  151 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL----------------KNEGTK-VLMAAGDTFRA--AASDQLEIWA  151 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCC-EEEECCCCSCH--HHHHHHHHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH----------------HHcCCe-EEEEeecccch--hHHHHHHHHH
Confidence            5789999999999999999999999999999999                455566 56666554331  0001111111


Q ss_pred             --HhcCC-CCCcc-HHHHHHHHHhhcc----CCCc--------------CCCCCCcccCChhhhhhhhccCCc--EEEEe
Q 024225          178 --ARRGA-PWTFN-PLLLLNCLKNLRN----QGSV--------------YAPSFDHGVGDPVEDDILVGLQHK--VVIVD  233 (270)
Q Consensus       178 --~~~g~-~~~~~-~~~~~~~l~~l~~----~~~~--------------~~~~~S~g~~~rv~~~~~l~~~~~--ilIld  233 (270)
                        ...++ ++... ......+.+++..    +.+.              ++.++|   +||+.++.++...|+  ++++|
T Consensus       152 ~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD  228 (302)
T 3b9q_A          152 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD  228 (302)
T ss_dssp             HHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred             HhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence              22333 32222 1222233333321    1110              111233   578888888888999  99999


Q ss_pred             CCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          234 GNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                       |+..+|...+  +..+.+    ..+++++..
T Consensus       229 -ptsglD~~~~--~~~~~~~~g~t~iiiThlD  257 (302)
T 3b9q_A          229 -GNTGLNMLPQ--AREFNEVVGITGLILTKLD  257 (302)
T ss_dssp             -GGGGGGGHHH--HHHHHHHTCCCEEEEECCS
T ss_pred             -CCCCcCHHHH--HHHHHHhcCCCEEEEeCCC
Confidence             9999997433  333332    237777754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.44  E-value=3.1e-14  Score=128.69  Aligned_cols=123  Identities=10%  Similarity=0.085  Sum_probs=86.0

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCC
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG  159 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg  159 (270)
                      ++++++ |  ..    +++++++.+++|++++|+||||||||||+++|+|++                +|+.|. +.++|
T Consensus       151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~----------------~~~~g~-i~i~~  206 (330)
T 2pt7_A          151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI----------------PKEERI-ISIED  206 (330)
T ss_dssp             TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS----------------CTTSCE-EEEES
T ss_pred             cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC----------------cCCCcE-EEECC
Confidence            456666 6  11    569999999999999999999999999999999998                667777 77776


Q ss_pred             CCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCC
Q 024225          160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (270)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~l  239 (270)
                      .....  +....      ...++.                .         .+|+++|++++.++..+|++||+||+..  
T Consensus       207 ~~e~~--~~~~~------~~i~~~----------------~---------ggg~~~r~~la~aL~~~p~ilildE~~~--  251 (330)
T 2pt7_A          207 TEEIV--FKHHK------NYTQLF----------------F---------GGNITSADCLKSCLRMRPDRIILGELRS--  251 (330)
T ss_dssp             SCCCC--CSSCS------SEEEEE----------------C---------BTTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred             eeccc--cccch------hEEEEE----------------e---------CCChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence            53111  11000      001110                0         1799999999999999999999999997  


Q ss_pred             ChhhHHHHHHhhcc---ceEEecccc
Q 024225          240 DGGVWKDVSSMFDE---KCYATSFKE  262 (270)
Q Consensus       240 De~~~~~l~~~~~~---~i~v~~~~~  262 (270)
                       ...++.+..+...   .+.++|..+
T Consensus       252 -~e~~~~l~~~~~g~~tvi~t~H~~~  276 (330)
T 2pt7_A          252 -SEAYDFYNVLCSGHKGTLTTLHAGS  276 (330)
T ss_dssp             -THHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             -HHHHHHHHHHhcCCCEEEEEEcccH
Confidence             3355555555432   245555543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.43  E-value=4.9e-14  Score=114.36  Aligned_cols=56  Identities=20%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~  141 (270)
                      ++..++++.|+...    +++++||++++|++++|+||||||||||+|+|+|++    |++|++
T Consensus         8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V   63 (158)
T 1htw_A            8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNV   63 (158)
T ss_dssp             ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCC
T ss_pred             cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeE
Confidence            45668899998643    779999999999999999999999999999999997    666663

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.37  E-value=1.1e-14  Score=123.98  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|+||++++|++++|+||||||||||+++|+|++
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            679999999999999999999999999999999987

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.36  E-value=2.2e-13  Score=114.23  Aligned_cols=142  Identities=17%  Similarity=0.267  Sum_probs=78.4

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceE--EeecCCCCccccccCcccChHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT--VLPMDGFHLYLSQLDAMEDPKEAHARR  180 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~--~i~~dg~~~~~~~l~~~~~~~~~~~~~  180 (270)
                      ..++|++++|+|+||||||||++.|++.+.                +..+.  ++..|.+.............. .... 
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~----------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~~~~-   79 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR----------------EQGISVCVFHMDDHIVERAKRYHTGNEE-WFEY-   79 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH----------------HTTCCEEEEEGGGGCCCHHHHSSSSSCH-HHHH-
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh----------------hcCCeEEEeccCcccCCHHHHHhcCCCC-ccCC-
Confidence            467899999999999999999999999983                22232  234455433211000000000 0000 


Q ss_pred             CCCCCccHHHHHHH-HHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225          181 GAPWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS  259 (270)
Q Consensus       181 g~~~~~~~~~~~~~-l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~  259 (270)
                       ++..++...+.+. +..+..+.....+.|++....+.. ........+++|+|+++++.+     .+.+.++..|||++
T Consensus        80 -~~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~  152 (201)
T 1rz3_A           80 -YYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDC  152 (201)
T ss_dssp             -HHTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECC
T ss_pred             -CccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeC
Confidence             1233455555433 355555555666666665332221 111223567999999998754     45677899999999


Q ss_pred             cccchhhccC
Q 024225          260 FKETYFNREA  269 (270)
Q Consensus       260 ~~~~~~~r~~  269 (270)
                      +.++++.|..
T Consensus       153 ~~~~~~~R~~  162 (201)
T 1rz3_A          153 PREIRFAREN  162 (201)
T ss_dssp             C---------
T ss_pred             CHHHHHHHHh
Confidence            9999988863

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.35  E-value=1.6e-13  Score=125.28  Aligned_cols=139  Identities=11%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHH-
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-  176 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~-  176 (270)
                      ..++|++++|++++|+||||||||||++.|+|++                .|+.|. +.+++.+.++.  ...+..... 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l----------------~~~~G~-V~l~g~D~~r~--~a~eql~~~~  208 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL----------------KNEGTK-VLMAAGDTFRA--AASDQLEIWA  208 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCC-EEEECCCCSCH--HHHHHHHHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc----------------cccCCE-EEEeccccccc--chhHHHHHHH
Confidence            4688999999999999999999999999999999                455566 66666554331  000111111 


Q ss_pred             -HHhcCC-CCCcc-HHHHHHHHHhhcc----CCCc--------------CCCCCCcccCChhhhhhhhccCCc--EEEEe
Q 024225          177 -HARRGA-PWTFN-PLLLLNCLKNLRN----QGSV--------------YAPSFDHGVGDPVEDDILVGLQHK--VVIVD  233 (270)
Q Consensus       177 -~~~~g~-~~~~~-~~~~~~~l~~l~~----~~~~--------------~~~~~S~g~~~rv~~~~~l~~~~~--ilIld  233 (270)
                       +...++ ++... ......+.+++..    +.+.              .+.++|   ++|+.++.++...|+  +|++|
T Consensus       209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD  285 (359)
T 2og2_A          209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD  285 (359)
T ss_dssp             HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred             HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence             122333 33222 2222333333321    1110              111234   578888888888999  99999


Q ss_pred             CCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225          234 GNYLFLDGGVWKDVSSMFD----EKCYATSFK  261 (270)
Q Consensus       234 ~~~~~lDe~~~~~l~~~~~----~~i~v~~~~  261 (270)
                       |+..+|...+  +..+.+    ..|++|+..
T Consensus       286 -pttglD~~~~--~~~~~~~~g~t~iiiThlD  314 (359)
T 2og2_A          286 -GNTGLNMLPQ--AREFNEVVGITGLILTKLD  314 (359)
T ss_dssp             -GGGGGGGHHH--HHHHHHHTCCCEEEEESCT
T ss_pred             -CCCCCCHHHH--HHHHHHhcCCeEEEEecCc
Confidence             9999997433  233322    236777744

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.34  E-value=5.7e-13  Score=117.13  Aligned_cols=131  Identities=13%  Similarity=0.057  Sum_probs=69.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC----CceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      .+||+||||||||||+++|+|++.   |++|++ +++.....    ....++.++...  ...+++.+++.+.....+  
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~--~~~ltv~d~~~~g~~~~~--   76 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGV--KMKLTVIDTPGFGDQINN--   76 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCC--cCCceEEechhhhhhccc--
Confidence            689999999999999999999995   888874 33321111    111223333221  122455555433211111  


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                       ......+...++.  ...+.....+|+|++||+++++++   +.++++||+...+|+...+.+..+-+
T Consensus        77 -~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal---~~lllldep~~gL~~lD~~~l~~L~~  139 (270)
T 3sop_A           77 -ENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVH---CCLYFISPTGHSLRPLDLEFMKHLSK  139 (270)
T ss_dssp             -TTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCC---EEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheee---eeeEEEecCCCcCCHHHHHHHHHHHh
Confidence             1112223222221  111233457899999999999887   55999999999999855544444433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.34  E-value=1.1e-12  Score=117.80  Aligned_cols=56  Identities=16%  Similarity=0.024  Sum_probs=45.8

Q ss_pred             CCCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225          206 APSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK  261 (270)
Q Consensus       206 ~~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~  261 (270)
                      +..+|+|++|+++++.+++    .+++++|+|||+..||+...+.+.+++..      .|+++|+.
T Consensus       217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~  282 (322)
T 1e69_A          217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK  282 (322)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred             hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4588999999999999876    47899999999999999877777776652      36777764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.33  E-value=6.9e-14  Score=136.07  Aligned_cols=164  Identities=9%  Similarity=0.025  Sum_probs=77.7

Q ss_pred             eEEeccchhhhhhhhccccccc------c--cceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCC
Q 024225           77 VVEARCMDEVYDALAQRLLPTS------A--LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~------~--isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~  148 (270)
                      .++++||++.|+...+.++-+.      +  .+++++.   +||+||||||||||+++|+|++                .
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~----------------~   70 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA----------------L   70 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-----------------
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC----------------C
Confidence            4778899999976432221111      1  2355554   9999999999999999999997                4


Q ss_pred             C-CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccC
Q 024225          149 P-DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       149 p-~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      | +.|. +..+|..+.......   ....+...++ ++........++.+++..........-.+...+++.........
T Consensus        71 P~~sG~-vt~~g~~i~~~~~~~---~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~  146 (608)
T 3szr_A           71 PRGSGI-VTRCPLVLKLKKLVN---EDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDV  146 (608)
T ss_dssp             -------CCCSCEEEEEEECSS---SSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSS
T ss_pred             CCCCCe-EEEcCEEEEEecCCc---cccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCC
Confidence            4 4565 666665432110010   0011123344 22222222334444443221100000011123344444444456


Q ss_pred             CcEEEEeCC------CCCCChhhHHHHHHhhcc---------ceEEeccccc
Q 024225          227 HKVVIVDGN------YLFLDGGVWKDVSSMFDE---------KCYATSFKET  263 (270)
Q Consensus       227 ~~ilIld~~------~~~lDe~~~~~l~~~~~~---------~i~v~~~~~~  263 (270)
                      ++++++|+|      +..+|+...+.+.+++..         .++++|+.|.
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~  198 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI  198 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence            899999999      999999877777777663         2566666653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.31  E-value=1.8e-12  Score=118.62  Aligned_cols=59  Identities=15%  Similarity=0.172  Sum_probs=49.9

Q ss_pred             CCCCCCcccCChhhhhhhhc------cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225          205 YAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET  263 (270)
Q Consensus       205 ~~~~~S~g~~~rv~~~~~l~------~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~  263 (270)
                      .+..+|+||+||++++.++.      .+++++|+|||+..||+...+.+.++++.       .|+|+|+.+.
T Consensus       276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~  347 (365)
T 3qf7_A          276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF  347 (365)
T ss_dssp             EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH
T ss_pred             CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence            45689999999999998887      69999999999999999888877777653       3788888754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.26  E-value=3.8e-12  Score=111.35  Aligned_cols=113  Identities=13%  Similarity=0.041  Sum_probs=71.3

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCC-ceEEee
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD-VATVLP  156 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~-~g~~i~  156 (270)
                      +++++|.+.    .    +|++++  +++|++++|+||||||||||+++|+|++                .|. .|. |.
T Consensus         6 ~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~----------------~~~~~G~-I~   58 (261)
T 2eyu_A            6 PEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI----------------NQTKSYH-II   58 (261)
T ss_dssp             CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH----------------HHHCCCE-EE
T ss_pred             CChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC----------------CCCCCCE-EE
Confidence            456666643    1    668888  8999999999999999999999999998                444 566 44


Q ss_pred             cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~  236 (270)
                      .++..+..  +  .+.      ..++..+            -..+.+  ...      -+++++.++..++++|++|||.
T Consensus        59 ~~g~~i~~--~--~~~------~~~~v~q------------~~~gl~--~~~------l~~~la~aL~~~p~illlDEp~  108 (261)
T 2eyu_A           59 TIEDPIEY--V--FKH------KKSIVNQ------------REVGED--TKS------FADALRAALREDPDVIFVGEMR  108 (261)
T ss_dssp             EEESSCCS--C--CCC------SSSEEEE------------EEBTTT--BSC------HHHHHHHHHHHCCSEEEESCCC
T ss_pred             EcCCccee--e--cCC------cceeeeH------------HHhCCC--HHH------HHHHHHHHHhhCCCEEEeCCCC
Confidence            44433211  0  000      0000000            001111  011      1688888888899999999999


Q ss_pred             CCCChhhHHHHHHh
Q 024225          237 LFLDGGVWKDVSSM  250 (270)
Q Consensus       237 ~~lDe~~~~~l~~~  250 (270)
                         |+.....+.+.
T Consensus       109 ---D~~~~~~~l~~  119 (261)
T 2eyu_A          109 ---DLETVETALRA  119 (261)
T ss_dssp             ---SHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHH
Confidence               87655544433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.24  E-value=3.2e-12  Score=122.26  Aligned_cols=148  Identities=11%  Similarity=0.026  Sum_probs=94.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .+++++++..|+....   +|   +..+.+|++++|+||||||||||++.++|.+.                +.-..++.
T Consensus       257 ~~~~~~l~~g~~~ld~---vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~----------------~~G~~vi~  314 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLDE---MC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC----------------ANKERAIL  314 (525)
T ss_dssp             CCCCCEECCSCHHHHH---HT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH----------------TTTCCEEE
T ss_pred             ccccceeecChHHHHH---Hh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----------------hCCCCEEE
Confidence            3567778777765321   22   34899999999999999999999999999983                21111233


Q ss_pred             cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh-hccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCC
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~-l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~  235 (270)
                      +......       ........++|+    +...   +.+. +..-.+.++..+|+|+++++..+.++..++++||+| |
T Consensus       315 ~~~ee~~-------~~l~~~~~~~g~----~~~~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p  379 (525)
T 1tf7_A          315 FAYEESR-------AQLLRNAYSWGM----DFEE---MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-S  379 (525)
T ss_dssp             EESSSCH-------HHHHHHHHTTSC----CHHH---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-C
T ss_pred             EEEeCCH-------HHHHHHHHHcCC----CHHH---HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-C
Confidence            3222110       000111122332    2221   1110 111134455689999999999999999999999999 9


Q ss_pred             CCCCChh-----hHHHHHHhhc-------cceEEeccc
Q 024225          236 YLFLDGG-----VWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       236 ~~~lDe~-----~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      +..+|..     .++.+.++++       ..++++++.
T Consensus       380 ~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          380 LSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             hHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            9999987     7777766665       226667765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.23  E-value=6.1e-14  Score=117.09  Aligned_cols=117  Identities=20%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC-CC
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WT  185 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~  185 (270)
                      |++++|+||||||||||+++|+|++                . +.|  +.++|+....  +..      ..++.|+. +.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~----------------~-~~G--i~~~g~~~~~--~~~------~~~~ig~~~~~   53 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL----------------K-SSG--VPVDGFYTEE--VRQ------GGRRIGFDVVT   53 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH----------------H-HTT--CCCEEEECCE--EET------TSSEEEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc----------------c-cCC--EEEcCEecch--hHh------hhceEEEEEEe
Confidence            7899999999999999999999998                2 233  3344433211  110      01112221 00


Q ss_pred             ccHHHHHHHHHhhccCC---------CcCCCCCCcccCChhhhh-h---hhccCCcEEEEeC--CCCCCChhhHHHHHHh
Q 024225          186 FNPLLLLNCLKNLRNQG---------SVYAPSFDHGVGDPVEDD-I---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSM  250 (270)
Q Consensus       186 ~~~~~~~~~l~~l~~~~---------~~~~~~~S~g~~~rv~~~-~---~l~~~~~ilIld~--~~~~lDe~~~~~l~~~  250 (270)
                      ...  ....+..+..+.         ..+...+|++++.++... .   ++..+++++|+||  ++-..|+.+++.+.++
T Consensus        54 ~~g--~~~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~  131 (189)
T 2i3b_A           54 LSG--TRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT  131 (189)
T ss_dssp             TTS--CEEEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred             ccc--ceehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence            000  000011111110         001112455555554322 2   3567899999999  7877899999999999


Q ss_pred             hc
Q 024225          251 FD  252 (270)
Q Consensus       251 ~~  252 (270)
                      ++
T Consensus       132 l~  133 (189)
T 2i3b_A          132 LS  133 (189)
T ss_dssp             HH
T ss_pred             Hh
Confidence            97

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.22  E-value=3.1e-12  Score=108.11  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecC
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD  158 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~d  158 (270)
                      +++.++..++....   ++.+   -+++|++++|+||||||||||+++|+|.+.   +..+.       -...+..++++
T Consensus         3 ~~~~i~tG~~~LD~---~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~-------g~~~~~~i~~~   66 (231)
T 4a74_A            3 TIGRISTGSKSLDK---LLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEE-------GGLNGSVIWID   66 (231)
T ss_dssp             CCCEECCSCHHHHH---HTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGG-------TCCSCEEEEEE
T ss_pred             cCCccCCCChhHHh---HhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHh---ccccc-------CCCCCEEEEEE
Confidence            34455555654321   2222   488999999999999999999999999763   11110       00123346666


Q ss_pred             CCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCC-hhhhhhhh-------ccCCcEE
Q 024225          159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGD-PVEDDILV-------GLQHKVV  230 (270)
Q Consensus       159 g~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~-rv~~~~~l-------~~~~~il  230 (270)
                      +.....     .+......+..++.    ..   ++.+++.....     ++..... .+.....+       ..+++++
T Consensus        67 ~~~~~~-----~~~i~~~~~~~~~~----~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  129 (231)
T 4a74_A           67 TENTFR-----PERIREIAQNRGLD----PD---EVLKHIYVARA-----FNSNHQMLLVQQAEDKIKELLNTDRPVKLL  129 (231)
T ss_dssp             SSSCCC-----HHHHHHHHHHTTSC----HH---HHHHTEEEEEC-----CSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred             CCCCCC-----HHHHHHHHHHcCCC----HH---HHhhcEEEEec-----CChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence            653211     11122333444432    11   56666654321     2222111 11211111       3478999


Q ss_pred             EEeCCCCCCCh
Q 024225          231 IVDGNYLFLDG  241 (270)
Q Consensus       231 Ild~~~~~lDe  241 (270)
                      ++|++...+|+
T Consensus       130 ilDe~~~~l~~  140 (231)
T 4a74_A          130 IVDSLTSHFRS  140 (231)
T ss_dssp             EEETSSHHHHH
T ss_pred             EECChHHHhcc
Confidence            99999999886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.19  E-value=1.1e-11  Score=109.62  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=35.3

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|+++++.+++|++++|+||||||||||++.|++.+.
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999983

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.19  E-value=2.3e-12  Score=123.21  Aligned_cols=154  Identities=10%  Similarity=0.041  Sum_probs=87.4

Q ss_pred             eEEeccchhhhhhhhcccccccccce-ecCCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCCcccCCCCCCCCCceE
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVAT  153 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl-~i~~geivgL~GpnGsGKSTLlk~--L~gll~~~~~~~G~~~~~~~~~p~~g~  153 (270)
                      +++.+++.+.+++    +.+|+++++ .+++|++++|+||||||||||+++  ++|++                +|..|.
T Consensus        12 ~~~~~~~~~~~~g----~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~----------------~~~~g~   71 (525)
T 1tf7_A           12 NSEHQAIAKMRTM----IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII----------------EFDEPG   71 (525)
T ss_dssp             --CCSSCCEECCC----CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----------------HHCCCE
T ss_pred             CccccccccccCC----chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH----------------hCCCCE
Confidence            4566667655544    348899999 999999999999999999999999  78998                455676


Q ss_pred             EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCc-CCCCCC-cccCC-hhhhhhhh-ccC
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV-YAPSFD-HGVGD-PVEDDILV-GLQ  226 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~-~~~~~S-~g~~~-rv~~~~~l-~~~  226 (270)
                       +++++....       .......+.+|+..+  .  ... ..++...   ... ....+. .+..+ .......+ ..+
T Consensus        72 -i~v~g~~~~-------~~~~~~~~~~g~~~q--~--~~~-~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~  138 (525)
T 1tf7_A           72 -VFVTFEETP-------QDIIKNARSFGWDLA--K--LVD-EGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYR  138 (525)
T ss_dssp             -EEEESSSCH-------HHHHHHHGGGTCCHH--H--HHH-TTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHT
T ss_pred             -EEEEEeCCH-------HHHHHHHHHcCCChH--H--hhc-cCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcC
Confidence             777776411       111122334554211  1  110 0111110   000 000000 00000 00111223 247


Q ss_pred             CcEEEEeCCCCCC-----ChhhHHHHHHhhc-------cceEEeccccc
Q 024225          227 HKVVIVDGNYLFL-----DGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       227 ~~ilIld~~~~~l-----De~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                      ++++++|+++..+     |+..++.+.++++       ..|+++|+.+.
T Consensus       139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~  187 (525)
T 1tf7_A          139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE  187 (525)
T ss_dssp             CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence            8899999998754     6666666666665       33788888765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.18  E-value=4.1e-12  Score=129.74  Aligned_cols=145  Identities=15%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             ceEEecc-----chhhhhhhhcccccccccceecCC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCC
Q 024225           76 PVVEARC-----MDEVYDALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (270)
Q Consensus        76 ~~l~~~~-----l~~~y~~~~~~v~~l~~isl~i~~-------geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~  143 (270)
                      +++++++     |.+.|.+.   ..++.|++|++++       |++++|+||||||||||+|.| |++. .         
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~---~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-~---------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD---DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-V---------  814 (1022)
T ss_dssp             CCEEEEEECCCC------CC---CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-H---------
T ss_pred             ceEEEEeccccEEEEEecCC---ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-H---------
Confidence            3588999     99998421   1267999999987       999999999999999999999 8872 0         


Q ss_pred             CCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh
Q 024225          144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       144 ~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                          ....|.+++.+..     .++..++.   ..+.|...            .+..    ....|+.++. +++.+.++
T Consensus       815 ----~aqiG~~Vpq~~~-----~l~v~d~I---~~rig~~d------------~~~~----~~stf~~em~-~~a~al~l  865 (1022)
T 2o8b_B          815 ----MAQMGCYVPAEVC-----RLTPIDRV---FTRLGASD------------RIMS----GESTFFVELS-ETASILMH  865 (1022)
T ss_dssp             ----HHTTTCCEESSEE-----EECCCSBE---EEECC-------------------------CHHHHHHH-HHHHHHHH
T ss_pred             ----HhheeEEeccCcC-----CCCHHHHH---HHHcCCHH------------HHhh----chhhhHHHHH-HHHHHHHh
Confidence                0112322333221     12222111   11222210            0000    1123445544 37777788


Q ss_pred             ccCCcEEEEeCCCCCCChh-----hHHHHHHhhc----cceEEeccccc
Q 024225          224 GLQHKVVIVDGNYLFLDGG-----VWKDVSSMFD----EKCYATSFKET  263 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~-----~~~~l~~~~~----~~i~v~~~~~~  263 (270)
                      +.++.++|+|||..++|..     .|.-+..+.+    ..+|+||+.+.
T Consensus       866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el  914 (1022)
T 2o8b_B          866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL  914 (1022)
T ss_dssp             CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH
T ss_pred             CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            8899999999999999963     3444444443    34788887654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.17  E-value=3.8e-12  Score=128.43  Aligned_cols=128  Identities=17%  Similarity=0.116  Sum_probs=76.7

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~  175 (270)
                      +++|++|++++|++++|+||||||||||+|+|+++.-  .+..|.     .++..... +..-+.               
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~-----~vpa~~~~-i~~~d~---------------  718 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGS-----YVPAEEAT-IGIVDG---------------  718 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTC-----CBSSSEEE-EECCSE---------------
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCc-----cccchhhh-hhHHHH---------------
Confidence            6699999999999999999999999999999987641  011110     00111111 111000               


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHH-----Hh
Q 024225          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SM  250 (270)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~-----~~  250 (270)
                      ...++|..            +++    ......|+.|++++..+... +.+++++|+|||+.++|+.....+.     .+
T Consensus       719 i~~~ig~~------------d~l----~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L  781 (918)
T 3thx_B          719 IFTRMGAA------------DNI----YKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYF  781 (918)
T ss_dssp             EEEEC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCChH------------HHH----HHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            00111110            111    11234678888888776665 5789999999999999985433332     22


Q ss_pred             hc----cceEEeccccc
Q 024225          251 FD----EKCYATSFKET  263 (270)
Q Consensus       251 ~~----~~i~v~~~~~~  263 (270)
                      .+    ..++++|+.+.
T Consensus       782 ~~~~g~tvl~vTH~~el  798 (918)
T 3thx_B          782 IRDVKSLTLFVTHYPPV  798 (918)
T ss_dssp             HHTTCCEEEEECSCGGG
T ss_pred             HHhcCCeEEEEeCcHHH
Confidence            22    34788888754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.14  E-value=9.1e-12  Score=113.24  Aligned_cols=64  Identities=19%  Similarity=0.269  Sum_probs=54.0

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      ++++++++++.|+..   +.+++++ |+|.+|+++||+||||||||||+++|+|++                .|+.|. +
T Consensus        44 ~~i~~~~l~~~~~tg---~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~----------------~~~~g~-i  102 (347)
T 2obl_A           44 DPLLRQVIDQPFILG---VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA----------------SADIIV-L  102 (347)
T ss_dssp             CSTTCCCCCSEECCS---CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS----------------CCSEEE-E
T ss_pred             CCeeecccceecCCC---CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCEEE-E
Confidence            457889999999731   3378999 999999999999999999999999999998                677776 5


Q ss_pred             ecCCC
Q 024225          156 PMDGF  160 (270)
Q Consensus       156 ~~dg~  160 (270)
                      ...|.
T Consensus       103 ~~~G~  107 (347)
T 2obl_A          103 ALIGE  107 (347)
T ss_dssp             EEESC
T ss_pred             EEecc
Confidence            55554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.13  E-value=4.1e-11  Score=121.22  Aligned_cols=126  Identities=16%  Similarity=0.062  Sum_probs=71.9

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~  175 (270)
                      +++|++|++++|++++|+||||||||||+|+|++..-  .++.|.      .-|..+..+..-+.               
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~------~vpa~~~~~~~~d~---------------  707 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGC------FVPCESAEVSIVDC---------------  707 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTC------CBSEEEEEEECCSE---------------
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCC------ccccccccchHHHH---------------
Confidence            5689999999999999999999999999999954431  011111      01111111111110               


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh--ccCCcEEEEeCCCCCCChhhHHHH-----H
Q 024225          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV-----S  248 (270)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l--~~~~~ilIld~~~~~lDe~~~~~l-----~  248 (270)
                      ...++|..                  .+ ....+|.++.++...+.++  +.+++++|+|||+.++|+.....+     .
T Consensus       708 i~~~ig~~------------------d~-l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~  768 (934)
T 3thx_A          708 ILARVGAG------------------DS-QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE  768 (934)
T ss_dssp             EEEECC----------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred             HHHhcCch------------------hh-HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            11122211                  00 0123455555555555545  678999999999999998533332     2


Q ss_pred             Hhhc----cceEEeccccc
Q 024225          249 SMFD----EKCYATSFKET  263 (270)
Q Consensus       249 ~~~~----~~i~v~~~~~~  263 (270)
                      .+.+    ..+|+||+.+.
T Consensus       769 ~l~~~~g~~vl~aTH~~el  787 (934)
T 3thx_A          769 YIATKIGAFCMFATHFHEL  787 (934)
T ss_dssp             HHHHTTCCEEEEEESCGGG
T ss_pred             HHHhcCCCEEEEEcCcHHH
Confidence            2222    34788888654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.11  E-value=1.5e-10  Score=100.12  Aligned_cols=144  Identities=24%  Similarity=0.411  Sum_probs=91.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcC---
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---  181 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g---  181 (270)
                      ....+|+|.|++||||||+++.|+..+.-  +    .++   .......++..|+++..   +.   .....+...|   
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~--~----~~d---~~~~~~~~i~~D~~~~~---~~---~~~~~~~~~g~~~   84 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ--N----EVD---YRQKQVVILSQDSFYRV---LT---SEQKAKALKGQFN   84 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTG--G----GSC---GGGCSEEEEEGGGGBCC---CC---HHHHHHHHTTCSC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhh--h----ccc---ccCCceEEEecCccccc---cC---hhhhhhhccCCCC
Confidence            34578999999999999999999997630  0    000   00112335788887531   11   1111122222   


Q ss_pred             --CCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225          182 --APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS  259 (270)
Q Consensus       182 --~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~  259 (270)
                        .+..++...+.+.++.+..+..+..|.|+.....++..... ....+++|+|+++++.++    .+.+.++..||+++
T Consensus        85 f~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~  159 (252)
T 1uj2_A           85 FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDT  159 (252)
T ss_dssp             TTSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH----HHHHHCSEEEEEEC
T ss_pred             CCCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH----HHHHhcCeeEEEeC
Confidence              24556667777888888777666666666555444421111 124679999998887664    56677899999999


Q ss_pred             cccchhhcc
Q 024225          260 FKETYFNRE  268 (270)
Q Consensus       260 ~~~~~~~r~  268 (270)
                      +.++++.|.
T Consensus       160 ~~e~~~~R~  168 (252)
T 1uj2_A          160 DADTRLSRR  168 (252)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999988774

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.10  E-value=3.9e-11  Score=107.17  Aligned_cols=42  Identities=19%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL  164 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~  164 (270)
                      +|++++|+||||||||||+++|+|++                .|+.|. +.++|.+.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll----------------~~~~g~-V~l~g~D~~r  142 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY----------------QNLGKK-VMFCAGDTFR  142 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH----------------HTTTCC-EEEECCCCSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH----------------HhcCCE-EEEEeecCCC
Confidence            69999999999999999999999999                455666 6666665543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.09  E-value=1.7e-11  Score=114.69  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=91.0

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i  155 (270)
                      +.++++++++.|+..   +.+|+++ |++.+|++++|+||||||||||+++|+|+.                .|+.|. +
T Consensus       130 ~~l~~~~v~~~~~tg---~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~----------------~~~~G~-i  188 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG---VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT----------------RADVIV-V  188 (438)
T ss_dssp             CTTTSCCCCSBCCCS---CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS----------------CCSEEE-E
T ss_pred             CceEEeccceecCCC---ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc----------------CCCeEE-E
Confidence            457889999999731   2378999 999999999999999999999999999998                677886 7


Q ss_pred             ecCCC---CccccccCcc-cChHHHHHhcCC-CCC-ccHHHHHHHHHhhc-------c-CCCc-----CCCCCCcccCCh
Q 024225          156 PMDGF---HLYLSQLDAM-EDPKEAHARRGA-PWT-FNPLLLLNCLKNLR-------N-QGSV-----YAPSFDHGVGDP  216 (270)
Q Consensus       156 ~~dg~---~~~~~~l~~~-~~~~~~~~~~g~-~~~-~~~~~~~~~l~~l~-------~-~~~~-----~~~~~S~g~~~r  216 (270)
                      .++|.   .+..  +... .......+..++ ++. .......++.+++.       . +.++     .+..||+|+ ||
T Consensus       189 ~~~G~r~~ev~~--~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qr  265 (438)
T 2dpy_A          189 GLIGERGREVKD--FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-RE  265 (438)
T ss_dssp             EEESCCHHHHHH--HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred             EEeceecHHHHH--HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence            77775   2211  0000 001112222344 221 22222222322221       1 1111     133678888 88


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ++++   ..++++      +..+|+.....+.+++.
T Consensus       266 vslA---l~~p~~------t~glD~~~~~~l~~ll~  292 (438)
T 2dpy_A          266 IALA---IGEPPA------TKGYPPSVFAKLPALVE  292 (438)
T ss_dssp             HHHH---TTCCCC------SSSCCTTHHHHHHHHHT
T ss_pred             HHHH---hCCCcc------cccCCHHHHHHHHHHHH
Confidence            8866   234444      89999988888887775

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.09  E-value=1.2e-11  Score=112.09  Aligned_cols=55  Identities=25%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .|++++++++++.|++..    ++++++|++.+|++++|+||||||||||+++|+|++.
T Consensus        26 ~i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           26 AITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             HHHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            456788999999998644    6799999999999999999999999999999999984

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.09  E-value=1.1e-11  Score=123.07  Aligned_cols=123  Identities=23%  Similarity=0.211  Sum_probs=73.7

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~  175 (270)
                      +++|++|+   |++++|+||||||||||+|+|+|+..  .++.|.+..     ..... +.+-...              
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vp-----a~~~~-i~~v~~i--------------  622 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVP-----AEEAH-LPLFDGI--------------  622 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBS-----SSEEE-ECCCSEE--------------
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceee-----hhccc-eeeHHHh--------------
Confidence            67899998   99999999999999999999999862  123333110     01111 1110000              


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh--ccCCcEEEEeCC---CCCCChhhH-HHHHH
Q 024225          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS  249 (270)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l--~~~~~ilIld~~---~~~lDe~~~-~~l~~  249 (270)
                       ..+.+.            .+++..       .+|.++.+++..+.++  +.+++++|+|||   +..+|.... ..+.+
T Consensus       623 -~~~~~~------------~d~l~~-------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~  682 (765)
T 1ewq_A          623 -YTRIGA------------SDDLAG-------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE  682 (765)
T ss_dssp             -EEECCC-------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             -hccCCH------------HHHHHh-------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence             001111            011111       2355667777777666  779999999999   888887543 33444


Q ss_pred             hhc----cceEEeccccc
Q 024225          250 MFD----EKCYATSFKET  263 (270)
Q Consensus       250 ~~~----~~i~v~~~~~~  263 (270)
                      .+.    ..+++||+.+.
T Consensus       683 ~L~~~g~~vl~~TH~~~l  700 (765)
T 1ewq_A          683 ALHERRAYTLFATHYFEL  700 (765)
T ss_dssp             HHHHHTCEEEEECCCHHH
T ss_pred             HHHhCCCEEEEEeCCHHH
Confidence            443    34778887643

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.09  E-value=1.5e-10  Score=96.79  Aligned_cols=135  Identities=16%  Similarity=0.250  Sum_probs=76.2

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHH
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~  178 (270)
                      ++--++++|++++|+|++||||||+++.|++.+.                 . ..++.+|++......+......   ..
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------~-~~~i~~D~~~~~~~~~~~~~~~---~~   71 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------N-CSVISQDDFFKPESEIETDKNG---FL   71 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------T-EEEEEGGGGBCCGGGSCBCTTS---CB
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------C-cEEEeCCccccCHhHhhccccC---CC
Confidence            3344588899999999999999999999999761                 1 3457888765432211110000   00


Q ss_pred             hcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEe
Q 024225          179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYAT  258 (270)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~  258 (270)
                      ...+....+...+.+.+..+.... . .+..+.++.+        ..+.+++|+|++++..+++    +.+..+..||++
T Consensus        72 ~~~~~~~~~~~~l~~~i~~~l~~~-~-~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~  137 (207)
T 2qt1_A           72 QYDVLEALNMEKMMSAISCWMESA-R-HSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLT  137 (207)
T ss_dssp             CCSSGGGBCHHHHHHHHHHHHHHH-T-TSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEE
T ss_pred             hhHHHHHhHHHHHHHHHHHHHhCC-C-CCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEE
Confidence            001111233333333332221110 1 1233444332        2357899999988776643    346678889999


Q ss_pred             ccccchhhcc
Q 024225          259 SFKETYFNRE  268 (270)
Q Consensus       259 ~~~~~~~~r~  268 (270)
                      ++.++++.|.
T Consensus       138 ~~~~~~~~R~  147 (207)
T 2qt1_A          138 IPYEECKRRR  147 (207)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9998877663

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.07  E-value=1.5e-11  Score=103.71  Aligned_cols=36  Identities=19%  Similarity=0.412  Sum_probs=32.8

Q ss_pred             cccccce-ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl-~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+++.. .+++|++++|+||||||||||++.|++.+
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5677776 79999999999999999999999999887

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.07  E-value=1.1e-11  Score=103.23  Aligned_cols=48  Identities=19%  Similarity=0.134  Sum_probs=34.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++++||++.|+. .    ++++  |.+.+|+.++|+|+||||||||++.|+|..
T Consensus         3 ~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A            3 NLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             --------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             chhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999963 2    5576  899999999999999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.06  E-value=1e-10  Score=99.65  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.6

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...++|++++|+||||||||||+++|+|++
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            457899999999999999999999999998

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.06  E-value=1.3e-11  Score=110.02  Aligned_cols=144  Identities=12%  Similarity=0.075  Sum_probs=59.2

Q ss_pred             ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCCcccCCCCCCCC-----CceEE
Q 024225           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPP-----DVATV  154 (270)
Q Consensus        81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl-l~~~~~~~G~~~~~~~~~p-----~~g~~  154 (270)
                      +||++.|+...    ++++++|+|      +|+||||||||||+++|.|. +   .+++|....+....+     ..+.+
T Consensus         2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~---~~~~gi~~~g~~~~~t~~~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDL---YPERVISGAAEKIERTVQIEASTVE   68 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred             CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc---cCCCCcccCCcccCCcceEeeEEEE
Confidence            57899998744    779999987      99999999999999999987 4   366662111111111     11221


Q ss_pred             eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeC
Q 024225          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (270)
Q Consensus       155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~  234 (270)
                      +..++..   ..++.++.+...... ...     +.+..+.+.+....+.++..+|+|++|++..+.++    -++++|+
T Consensus        69 ~q~~~~~---~~ltv~Dt~g~~~~~-~~~-----e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~----~ll~lde  135 (301)
T 2qnr_A           69 IEERGVK---LRLTVVDTPGYGDAI-NCR-----DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVH----CCFYFIS  135 (301)
T ss_dssp             EC---CC---EEEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCC----EEEEEEC
T ss_pred             ecCCCcc---cCcchhhhhhhhhhc-CcH-----HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhh----heeeeec
Confidence            2222221   113443333221100 000     00111111111111244567899999998865544    2899999


Q ss_pred             CCCC-CChhhHHHHHHh
Q 024225          235 NYLF-LDGGVWKDVSSM  250 (270)
Q Consensus       235 ~~~~-lDe~~~~~l~~~  250 (270)
                      |+.. +|+...+.+..+
T Consensus       136 Pt~~~Ld~~~~~~l~~l  152 (301)
T 2qnr_A          136 PFGHGLKPLDVAFMKAI  152 (301)
T ss_dssp             SSSSSCCHHHHHHHHHH
T ss_pred             CcccCCCHHHHHHHHHH
Confidence            9874 998554444443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.05  E-value=6.9e-11  Score=111.56  Aligned_cols=41  Identities=29%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      +|+++||++++ +++||+||||||||||+++|+|++.   |++|+
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~   59 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTL   59 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTT
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCE
Confidence            67999999999 9999999999999999999999994   66666

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.04  E-value=1.2e-11  Score=111.59  Aligned_cols=78  Identities=14%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~  182 (270)
                      ..++|++++|+|||||||||++++|+|++                .|..|. +.+++.+.++  ....+......++.|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l----------------~~~~g~-V~l~g~D~~r--~~a~eql~~~~~~~gv  185 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWL----------------KNHGFS-VVIAASDTFR--AGAIEQLEEHAKRIGV  185 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHH----------------HHTTCC-EEEEEECCSS--TTHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHH----------------HhcCCE-EEEEeecccc--cchHHHHHHHHHHcCc
Confidence            44789999999999999999999999999                455566 5566655443  1122222233455664


Q ss_pred             ---CCCccHHHHHHHHHhhc
Q 024225          183 ---PWTFNPLLLLNCLKNLR  199 (270)
Q Consensus       183 ---~~~~~~~~~~~~l~~l~  199 (270)
                         ++.........+.+++.
T Consensus       186 ~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          186 KVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             EEECCCTTCCHHHHHHHHHH
T ss_pred             eEEeccccCCHHHHHHHHHH
Confidence               23223333444555544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.03  E-value=6.5e-10  Score=97.46  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=71.6

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHH---HHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA---HAR  179 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~---~~~  179 (270)
                      .+++|++++|+||||||||||++.|++.+.     .|..+.+... ...+.+++++...          .....   ...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~-~~~~~v~~~~~e~----------~~~~~~~r~~~   89 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGE-LPTGPVIYLPAED----------PPTAIHHRLHA   89 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCC-CCCCCEEEEESSS----------CHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCcc-CCCccEEEEECCC----------CHHHHHHHHHH
Confidence            478999999999999999999999999773     3432222111 1112223333221          11111   122


Q ss_pred             cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC--CCChh
Q 024225          180 RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGG  242 (270)
Q Consensus       180 ~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~--~lDe~  242 (270)
                      .+.  ..+......+++++.+..  +..+..+|+|+.+++.   ++..++++||+|++..  .+|+.
T Consensus        90 ~g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~---~l~~~~~livlDe~~~~~~~d~~  151 (279)
T 1nlf_A           90 LGA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLK---RAAEGRRLMVLDTLRRFHIEEEN  151 (279)
T ss_dssp             HHT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHH---HHHTTCSEEEEECGGGGCCSCTT
T ss_pred             HHh--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHHH---HhcCCCCEEEECCHHHhcCCCcC
Confidence            232  123334455667766543  3456678888866553   4445799999999998  67863

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.02  E-value=7.3e-11  Score=104.68  Aligned_cols=148  Identities=14%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCcc-ccccCc-ccChHHH-HHhcCC
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDA-MEDPKEA-HARRGA  182 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~-~~~l~~-~~~~~~~-~~~~g~  182 (270)
                      ++.+|||.|++||||||+++.|...+..              ......++.+|+++.. ...++. ....+.. ...+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--------------~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~   69 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSH   69 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCST
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCC
Confidence            4578999999999999999999987621              1222456899998642 111100 0000000 012222


Q ss_pred             --CCCccHHHHHHHHHhhccCCCcCCCCCCcc-----cCChhhhh----hhhccCCcEEEEeCCCCCCChhhHHHHHHhh
Q 024225          183 --PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG-----VGDPVEDD----ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (270)
Q Consensus       183 --~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g-----~~~rv~~~----~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~  251 (270)
                        +..++...+.+.+..+..+.....|.|++.     ...+....    ..+....+++|+|+++++... .+..+.+.+
T Consensus        70 fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~~~  148 (290)
T 1a7j_A           70 FSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAGLA  148 (290)
T ss_dssp             TSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGGGC
T ss_pred             CChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHHhC
Confidence              445555666666776666655555666331     11111110    112235789999999998420 012456788


Q ss_pred             ccceEEeccccchhhcc
Q 024225          252 DEKCYATSFKETYFNRE  268 (270)
Q Consensus       252 ~~~i~v~~~~~~~~~r~  268 (270)
                      |.+|||+++.++++.|+
T Consensus       149 D~~IfV~a~~~~rl~Rr  165 (290)
T 1a7j_A          149 DLKIGVVPVINLEWIQK  165 (290)
T ss_dssp             SEEEEEEECHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHH
Confidence            99999999999998876

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.00  E-value=5.3e-10  Score=101.06  Aligned_cols=57  Identities=9%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             CCCCCCcccCC------hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          205 YAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       205 ~~~~~S~g~~~------rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      .+..+|+|++|      +++++.++..+++++|+|||+..||+..+..+.+++.       ..|+++|+.
T Consensus       245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~  314 (339)
T 3qkt_A          245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE  314 (339)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred             ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence            45689999999      4566667777999999999999999987777766664       236777774

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.99  E-value=4.6e-11  Score=109.09  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=43.4

Q ss_pred             Eeccchhh---hhhhhcccc-------cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        79 ~~~~l~~~---y~~~~~~v~-------~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +++++++.   |+.....++       ++++++|.+++|++++|+||||||||||+++|+|++.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            56677777   754222222       3499999999999999999999999999999999983

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.98  E-value=4.8e-10  Score=104.24  Aligned_cols=46  Identities=17%  Similarity=0.110  Sum_probs=36.5

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.++||++.|++..    ++++++|+|      +|+|+||||||||+++|+|..
T Consensus        10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred             CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence            4589999999998643    779999987      999999999999999999986

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.97  E-value=1.4e-10  Score=115.80  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=33.3

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|++|+ ++|++++|+||||||||||+|+|+|+.
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            67999999 999999999999999999999999985

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.93  E-value=9.3e-10  Score=100.28  Aligned_cols=30  Identities=33%  Similarity=0.488  Sum_probs=28.0

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.+|++++|+||||||||||+++|+|++.
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            678889999999999999999999999994

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.93  E-value=4.3e-10  Score=102.25  Aligned_cols=116  Identities=21%  Similarity=0.224  Sum_probs=72.2

Q ss_pred             cccc-ceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCc----eEEeecCCCCccccccCccc
Q 024225           97 TSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----ATVLPMDGFHLYLSQLDAME  171 (270)
Q Consensus        97 l~~i-sl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~----g~~i~~dg~~~~~~~l~~~~  171 (270)
                      |+.+ .+.+++|++++|+||||||||||++.|++...              .+|+.    |.++++++.....     .+
T Consensus       120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~--------------~~~~~Gg~~G~vi~i~~e~~~~-----~~  180 (349)
T 1pzn_A          120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--------------LPPEEGGLNGSVIWIDTENTFR-----PE  180 (349)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--------------SCGGGTSCSCEEEEEESSSCCC-----HH
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc--------------cchhcCCCCCeEEEEeCCCCCC-----HH
Confidence            4444 57899999999999999999999999999972              02333    4567888765321     01


Q ss_pred             ChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhc-------cCCcEEEEeCCCCCCChh
Q 024225          172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG  242 (270)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~-------~~~~ilIld~~~~~lDe~  242 (270)
                      ...+.....++    +..   ++++++......    .+.++.+++..+..+.       .++++||+|++..++|..
T Consensus       181 ~i~~i~q~~~~----~~~---~v~~ni~~~~~~----~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          181 RIREIAQNRGL----DPD---EVLKHIYVARAF----NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             HHHHHHHTTTC----CHH---HHGGGEEEEECC----SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred             HHHHHHHHcCC----CHH---HHhhCEEEEecC----ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence            11122223332    211   555565543211    1234445555444443       579999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.92  E-value=4.5e-11  Score=109.09  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             ccccceecCC--CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        97 l~~isl~i~~--geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...|++++.+  |+.++|+||||||||||+++|+|++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3679999999  9999999999999999999999998

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.91  E-value=2e-10  Score=99.78  Aligned_cols=52  Identities=19%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             ceEEeccc-hhhh-hhhhcccccccccceecCC---CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        76 ~~l~~~~l-~~~y-~~~~~~v~~l~~isl~i~~---geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++++++|| ++.| +...    +|+++||++.+   |++++|+|++||||||++++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            47899999 9999 4422    77999999999   9999999999999999999999988

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.90  E-value=6.1e-10  Score=93.40  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=25.7

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.|  .++++|++++|+||||||||||+|+|+|++
T Consensus        11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3466  589999999999999999999999999998

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.88  E-value=1.9e-10  Score=94.26  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=56.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCC---ceEEeecCCCCccccccCcccChHHHH-HhcC--
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRG--  181 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~---~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g--  181 (270)
                      ++++|+|+||||||||+++|+|++                .|.   .|. |.+|+..+..  ++. ...+..+ ...+  
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~----------------~~~g~~~G~-I~~dg~~i~~--~~~-~~~d~~r~~~ig~~   62 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL----------------RERGLRVAV-VKRHAHGDFE--IDK-EGKDSWKIYNSGAD   62 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH----------------HHTTCCEEE-EEC---------------CHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh----------------hhcCCceEE-EEEcCccccc--CCc-cchhHHHHHhcCCc
Confidence            689999999999999999999999                444   566 8888875432  110 0111222 2344  


Q ss_pred             --C-CCCc-------cHH---HHHHHHHh-hccCCCc-CCCCCCcccCChhhhhhhhccCCc
Q 024225          182 --A-PWTF-------NPL---LLLNCLKN-LRNQGSV-YAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       182 --~-~~~~-------~~~---~~~~~l~~-l~~~~~~-~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                        + .+..       +.+   .+.++++. +. +.+. -...||+|++||+++++++..+++
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~  123 (171)
T 2f1r_A           63 VVIASPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEH  123 (171)
T ss_dssp             EEEECSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGG
T ss_pred             eEEECCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCc
Confidence              2 2111       011   23344544 43 3332 122499999999999987766544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.84  E-value=1.3e-09  Score=102.85  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=33.1

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++||++++|++++|+|+||||||||+++|+|++
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.83  E-value=8.4e-10  Score=93.96  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHH-HHh
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI  131 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~-gll  131 (270)
                      ..++||++++|+++||+||||||||||+++|+ |++
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            38999999999999999999999999999999 987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.83  E-value=1.8e-09  Score=89.61  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |+++.+|++++|+||||||||||+++|+|++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            5678899999999999999999999999996

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.81  E-value=1.3e-08  Score=84.78  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=25.4

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.++|++++|+||||||||||+++|++.+
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3556789999999999999999999999997

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.81  E-value=3.8e-09  Score=93.78  Aligned_cols=47  Identities=19%  Similarity=0.184  Sum_probs=39.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +..+++++.|+..      .++++|+  +|++++|+|+||+||||++..|++.+.
T Consensus        77 ~~~~~l~~~~~~~------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           77 TVYEALKEALGGE------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             HHHHHHHHHTTSS------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566788888642      1678887  899999999999999999999999983

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.79  E-value=7.3e-10  Score=103.00  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeE--EEEECCCCCCHHHHHHHHHHHh
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~gei--vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+++++ ++.|++.    . ++++||++++|++  +||+||||||||||+++|+|+.
T Consensus        15 ~~l~~~~-~~~y~~~----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           15 RTVPLAG-HVGFDSL----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             --CCCCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ceEEEee-EEEECCe----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3466777 8889752    2 6999999999999  9999999999999999999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.77  E-value=9.9e-09  Score=81.96  Aligned_cols=32  Identities=25%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +++++     +|+.++|.||||+|||||+++|++.+.
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45555     899999999999999999999999983

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.76  E-value=5.7e-09  Score=95.61  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|++++  +++|++++|+||||||||||+++|+|++
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345554  7899999999999999999999999998

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.73  E-value=3.8e-09  Score=98.19  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      .++++++.+.|+...    +|+++ + ..+|++++|+||||||||||+++|+|++.   ++.|.
T Consensus       143 ~~~l~~Lg~~~~~~~----~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~  197 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHD----NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERN  197 (418)
T ss_dssp             CCCGGGSCCCHHHHH----HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSC
T ss_pred             CCCHHHcCCCHHHHH----HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence            467888988887644    66887 5 38899999999999999999999999995   66676

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.73  E-value=9.5e-09  Score=83.88  Aligned_cols=31  Identities=29%  Similarity=0.457  Sum_probs=28.9

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.+.+|+.++|.||||+|||||+++|++.+
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5667889999999999999999999999998

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.69  E-value=1.2e-08  Score=90.95  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++++.++|++++|+|||||||||+++.|++.+.
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            3566778999999999999999999999999984

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.67  E-value=4.7e-10  Score=96.53  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHH---HHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVV---RRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~---gll  131 (270)
                      ++++++|+||||||||||+++|+   |+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            47999999999999999999999   654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.66  E-value=5.4e-08  Score=81.28  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             cccccce-ecCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus        96 ~l~~isl-~i~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+.+.. .+++|++++|+||||||||||++.|++
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4455554 589999999999999999999999999

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.64  E-value=8.7e-09  Score=85.74  Aligned_cols=46  Identities=17%  Similarity=0.114  Sum_probs=34.9

Q ss_pred             cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |++..++.    +.+.+..++..++|++++|+|||||||||++++|++.+
T Consensus         4 ~~~~~~~~----~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A            4 NIKWHECS----VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             ------CC----CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcccccc----cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45555543    23557788888999999999999999999999999998

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.62  E-value=1.6e-09  Score=98.56  Aligned_cols=42  Identities=24%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~  141 (270)
                      ++++++.+ +|++++|+||||||||||+++|+|.+..  ++.|++
T Consensus       206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I  247 (358)
T 2rcn_A          206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDV  247 (358)
T ss_dssp             HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC--
T ss_pred             HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCc
Confidence            34555544 7999999999999999999999998721  566664

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.62  E-value=2.3e-08  Score=81.96  Aligned_cols=29  Identities=34%  Similarity=0.432  Sum_probs=26.3

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+++|++++|+||||||||||+++|++..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence            37889999999999999999999999964

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.62  E-value=3.6e-08  Score=80.33  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +++++++.+| +.+|+||||||||||+++|.+++.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            6778888888 999999999999999999999984

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=2.4e-08  Score=83.03  Aligned_cols=36  Identities=33%  Similarity=0.358  Sum_probs=25.6

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|+||++.+|++++|+|++||||||+++.|++.+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            679999999999999999999999999999999988

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.60  E-value=1.3e-09  Score=93.23  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      .|+++|+...|+.           ++++.+ ++++|+||||||||||+++|+|++.   |++|.
T Consensus         9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~   57 (227)
T 1qhl_A            9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTL   57 (227)
T ss_dssp             EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTT
T ss_pred             EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCe
Confidence            4788888776642           344444 8999999999999999999999994   66665

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.58  E-value=8.5e-09  Score=98.19  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=37.9

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      +++++++.+++|++++|+||||||||||+++|+|++.   |++|.
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~gi  290 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKV  290 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCE
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCE
Confidence            5688999999999999999999999999999999994   55665

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.56  E-value=2.7e-08  Score=82.93  Aligned_cols=27  Identities=41%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|++++|+||||||||||+++|+|++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.55  E-value=3.9e-08  Score=81.45  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=26.3

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++.+|++++|+|||||||||++++|++++
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999999999999999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.54  E-value=4.2e-10  Score=104.56  Aligned_cols=127  Identities=20%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCC-CCccccccCcccChHHH
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKEA  176 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg-~~~~~~~l~~~~~~~~~  176 (270)
                      ++++|+++.|++|+|+|+||||||||+++|++..    +..+. .......|..|. +.+++ ..+.-.+.......  .
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~-~~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~--a  219 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAP-YPFTTLSPNLGV-VEVSEEERFTLADIPGIIEG--A  219 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECC-CTTCSSCCEEEE-EECSSSCEEEEEECCCCCCC--G
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccC-cccceecceeeE-EEecCcceEEEEeccccccc--h
Confidence            5899999999999999999999999999999874    21100 000012455565 66655 21111111111000  0


Q ss_pred             HHhcCCCCCccHHHHHHHHHhhcc-----CC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225          177 HARRGAPWTFNPLLLLNCLKNLRN-----QG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       177 ~~~~g~~~~~~~~~~~~~l~~l~~-----~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe  241 (270)
                      ....++.     ..+...++....     +. ......+|.++++++..+.++...+.+|++    .-+|.
T Consensus       220 ~~~~~L~-----~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl  281 (416)
T 1udx_A          220 SEGKGLG-----LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL  281 (416)
T ss_dssp             GGSCCSC-----HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred             hhhhhhh-----HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence            0111111     111121111110     01 122235788899998888777788999998    45554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.49  E-value=1e-07  Score=80.75  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -+++|++++|+||||||||||++.|++.
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999999999999995

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.49  E-value=3.1e-08  Score=88.03  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~  140 (270)
                      |++..|++++|+||||||||||+++|+|++.   |+.|+
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~  199 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSE  199 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC---
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccc
Confidence            5677899999999999999999999999984   55555

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.48  E-value=1.5e-08  Score=90.47  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~  141 (270)
                      +++.+|++++|+||||||||||+++|+|++.   ++.|++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I  204 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEI  204 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccce
Confidence            7788999999999999999999999999985   666764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.45  E-value=5.9e-08  Score=83.48  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=41.5

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+++++.+.|+...    +++++++++++|  ++|.||||+|||||+++|++.+
T Consensus        26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence            45678888886533    679999999999  9999999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.44  E-value=1.1e-07  Score=77.76  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|++++|+||||||||||+++|++.+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.43  E-value=7.2e-08  Score=84.22  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=41.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+++++.+.|+...    +++++++++++|  ++|+||||||||||+++|++.+
T Consensus        50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence            35678888886543    679999999999  9999999999999999999997

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.42  E-value=9.8e-08  Score=92.59  Aligned_cols=51  Identities=27%  Similarity=0.399  Sum_probs=43.4

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++-+++...|+...    +++++++.+..|+.++|+||||+|||||+++|++++.
T Consensus        35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            33456777777644    6699999999999999999999999999999999983

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.40  E-value=1.6e-07  Score=82.31  Aligned_cols=34  Identities=41%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++++++++++|  ++|.||||||||||+++|++.+
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence            679999999999  9999999999999999999998

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.38  E-value=3e-08  Score=89.25  Aligned_cols=50  Identities=30%  Similarity=0.464  Sum_probs=42.7

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCC-------eEEEEECCCCCCHHHHHHHHHHHh
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~g-------eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.+++++.|+...    +++++++.+..|       +.++|.||||+|||||+++|++.+
T Consensus        19 lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           19 LRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             TSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            56678888887644    568888888766       899999999999999999999998

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.37  E-value=1.3e-07  Score=84.09  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~  142 (270)
                      +++..|++++|+||||||||||+++|+ ++.   ++.|++.
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~  196 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVS  196 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC-
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---Ccccccc
Confidence            456789999999999999999999999 775   8889853

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.34  E-value=3.5e-07  Score=84.46  Aligned_cols=110  Identities=16%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~--gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~  180 (270)
                      -+++|++++|+||||||||||++.|+  +++.   ++.|         ...+.++++++.....    . .......+++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G---------g~~~~viyid~E~~~~----~-~rl~~~a~~~  236 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG---------GGEGKCLYIDTEGTFR----P-VRLVSIAQRF  236 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT---------CCSSEEEEEESSSCCC----H-HHHHHHHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC---------CCCCcEEEEeCCCccC----H-HHHHHHHHHc
Confidence            48899999999999999999999665  3331   1111         0123457777764221    0 1112234455


Q ss_pred             CCCCCccHHHHHHHHHhhccCCCcCCCCCCcc-cCChhhhh--hhhccCCcEEEEeCCCCCCCh
Q 024225          181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG-VGDPVEDD--ILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       181 g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g-~~~rv~~~--~~l~~~~~ilIld~~~~~lDe  241 (270)
                      |+.    .   .++++++.....     ++.. +.+.+..+  ......+++||+|++...+|.
T Consensus       237 gl~----~---~~vleni~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~  288 (400)
T 3lda_A          237 GLD----P---DDALNNVAYARA-----YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT  288 (400)
T ss_dssp             TCC----H---HHHHHTEEEEEC-----CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred             CCC----h---HhHhhcEEEecc-----CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence            542    1   245566554221     1111 11111111  112246899999999998885

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.33  E-value=1.8e-07  Score=85.66  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=34.6

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++++++.+++|++++|+||||||||||+++|++.+
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            679999999999999999999999999999999987

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.33  E-value=4.7e-07  Score=80.29  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=26.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+|++++|+|||||||||++..|++.+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999983

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.30  E-value=9.8e-07  Score=73.08  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+|+|.|++||||||+++.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999987

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.29  E-value=1.7e-07  Score=84.71  Aligned_cols=55  Identities=24%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.+++.+++.+.|+...    +++++++.+.+|.+++|+|++|+|||||++.|++.+.
T Consensus        27 ~i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           27 AMTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            455678888999887644    6689999999999999999999999999999999984

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.29  E-value=3.5e-07  Score=76.55  Aligned_cols=27  Identities=30%  Similarity=0.521  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|++++|+||||||||||++.|++.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.29  E-value=1.7e-07  Score=80.99  Aligned_cols=27  Identities=30%  Similarity=0.657  Sum_probs=24.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|++|+|+|||||||||++++|+..+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            689999999999999999999999443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.28  E-value=1.4e-07  Score=78.46  Aligned_cols=37  Identities=14%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ..++++|.+++.-.     .+...++..|||+++.++++.|.
T Consensus       111 ~~~vv~d~pll~e~-----~~~~~~d~vi~v~a~~e~r~~Rl  147 (192)
T 2grj_A          111 SGLIVIEAALLKRM-----GLDQLCDHVITVVASRETILKRN  147 (192)
T ss_dssp             CEEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHC
T ss_pred             CCEEEEEEeceeec-----ChHHhCCEEEEEECCHHHHHHHH
Confidence            46899998866554     24467889999999999999884

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.27  E-value=3.8e-07  Score=74.70  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=23.1

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |++++|+||||||||||+++|++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc
Confidence            6899999999999999999999854

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.26  E-value=6.2e-07  Score=72.44  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=25.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|++++|+|+|||||||++++|++.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            568999999999999999999999987

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.23  E-value=6.2e-07  Score=73.62  Aligned_cols=24  Identities=38%  Similarity=0.463  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.++|+|+||||||||++.++|..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            578999999999999999999976

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.21  E-value=3.7e-07  Score=77.64  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=27.7

Q ss_pred             cceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       100 isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -+...++|++++|.|+|||||||++++|+++
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3456789999999999999999999999886

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.21  E-value=7.8e-07  Score=80.96  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CCCcccCChhhhhhhhc---------cCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225          208 SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~---------~~~~ilIld~~~~~lDe~~~~~l~~~~~~  253 (270)
                      .+|+||+|+++++.+++         ..++++++|||+..||+..++.+.+++..
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~  319 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS  319 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence            58999999999999998         79999999999999999888888887753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.21  E-value=6.1e-07  Score=72.18  Aligned_cols=26  Identities=38%  Similarity=0.622  Sum_probs=24.4

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|++++|+|+|||||||++++|++.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999999999998

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.21  E-value=6.2e-07  Score=80.41  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+++|++++|++++|+|+||+||||++..|++.+.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999984

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.21  E-value=2.4e-06  Score=76.51  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=27.2

Q ss_pred             hccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK  261 (270)
Q Consensus       223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~  261 (270)
                      +..+++++|+||+.. +|+..+..+.+.+++      .|+++++.
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~  174 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM  174 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence            345789999999999 898888888887763      35555554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.18  E-value=1e-06  Score=81.82  Aligned_cols=45  Identities=11%  Similarity=0.057  Sum_probs=39.8

Q ss_pred             CCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .+|+||+++++++.+++    .+++++|+|||+..||+..+..+.+++.
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~  381 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR  381 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHH
Confidence            38999999999999887    4789999999999999988888777775

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.15  E-value=1.2e-06  Score=73.12  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++...+|++++|+||||||||||++.|.+.+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3445689999999999999999999999987

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.14  E-value=7.9e-07  Score=85.31  Aligned_cols=30  Identities=37%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+++|++++|+|+||||||||+++|++.+.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            578999999999999999999999999993

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.13  E-value=1.4e-06  Score=83.45  Aligned_cols=48  Identities=27%  Similarity=0.440  Sum_probs=41.0

Q ss_pred             EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -++++.+.|....    ++.++++++ +|++++|+||||+|||||++.|++.+
T Consensus        85 G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A           85 GLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             SCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3467777776533    668888888 89999999999999999999999998

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.11  E-value=1.3e-06  Score=76.81  Aligned_cols=38  Identities=16%  Similarity=0.131  Sum_probs=29.1

Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ..+++|+|+++++-.     .+...++..|||+++.++++.|.
T Consensus       180 ~~~~vIveg~~l~~~-----~~~~~~d~vI~l~a~~ev~~~Rl  217 (281)
T 2f6r_A          180 GKTLCVIDAAMLLEA-----GWQSMVHEVWTVVIPETEAVRRI  217 (281)
T ss_dssp             TCCEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHH
T ss_pred             CCCEEEEEechhhcc-----chHHhCCEEEEEcCCHHHHHHHH
Confidence            357999999875533     23456789999999999988774

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.09  E-value=2.8e-07  Score=83.14  Aligned_cols=38  Identities=26%  Similarity=0.642  Sum_probs=32.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL  164 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~  164 (270)
                      .+|+|+||+|||||||++.|+..+.                   +.+|..|++.+++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~-------------------~~iis~Ds~qvYr   45 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN-------------------GEIISGDSMQVYQ   45 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT-------------------EEEEECCSSTTBT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC-------------------Cceeccccccccc
Confidence            5899999999999999999999872                   5678999985543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.01  E-value=3.3e-06  Score=70.88  Aligned_cols=25  Identities=32%  Similarity=0.678  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++|+||+||||||++++|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999987

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.99  E-value=2e-06  Score=78.76  Aligned_cols=53  Identities=21%  Similarity=0.237  Sum_probs=45.9

Q ss_pred             eEEeccchhhhhhhhccccccc--------------ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~--------------~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+.++||+..|+...  . .++              |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus       133 ri~Fe~ltp~yP~er--~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANSR--L-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCSB--C-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCc--c-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            367899999998632  2 456              8999999999999999999999999999999885

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.99  E-value=4.3e-06  Score=76.94  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++..|..+||+|+||||||||+++|+|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4788999999999999999999999994

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.98  E-value=2.9e-05  Score=61.62  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=29.0

Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc---cceEEeccccchhhcc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD---EKCYATSFKETYFNRE  268 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~---~~i~v~~~~~~~~~r~  268 (270)
                      ..+.+|+|+.   .....++.+.+...   ..||++++.++++.|.
T Consensus        77 ~~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~  119 (179)
T 3lw7_A           77 NHDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRM  119 (179)
T ss_dssp             CCSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHH
T ss_pred             CCCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence            4567888984   55555666667664   6799999998877663

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.95  E-value=5.6e-06  Score=67.09  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|++++|.|++||||||++++|++.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999988

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.94  E-value=5.9e-06  Score=70.32  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             ccccceecC---CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        97 l~~isl~i~---~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      |.++++.+.   +|.++.|.|++||||||+++.|+..+.
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            455666555   899999999999999999999999983

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.94  E-value=6.7e-06  Score=65.31  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=24.9

Q ss_pred             cceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+++.+ .+.+|+|||||||||++..|.-.+
T Consensus        17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            3444443 589999999999999999998665

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.92  E-value=2.1e-06  Score=76.68  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -++++|+|+||||||||++.|.|+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4789999999999999999999985

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.92  E-value=6.7e-06  Score=67.17  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=27.1

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++|++..+|.+++|+|++||||||+++.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            46888899999999999999999999999998

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.87  E-value=6.9e-06  Score=68.20  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=26.2

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...+|.+++|+|||||||||+++.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            36789999999999999999999999886

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.87  E-value=6.6e-06  Score=76.44  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++|.+.|+...      .+++|+  +|++++|+|+|||||||++..|++.+.
T Consensus        79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346777776521      567777  899999999999999999999999994

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.86  E-value=6.4e-06  Score=65.55  Aligned_cols=60  Identities=10%  Similarity=0.104  Sum_probs=48.1

Q ss_pred             CcCCCCCCcccCChhhhh------hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225          203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE  262 (270)
Q Consensus       203 ~~~~~~~S~g~~~rv~~~------~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~  262 (270)
                      +..+..+|+||+||++++      .++..+++++|+|||+..+|+...+.+.+++.       ..|+++|+.+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~  124 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE  124 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence            345668999999999876      56777899999999999999987777777665       2367788763

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.86  E-value=1.4e-05  Score=74.81  Aligned_cols=36  Identities=17%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+++..-+.+|+++.|+|++|+|||||+..|++.+
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            567777779999999999999999999999999977

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.85  E-value=3.9e-06  Score=74.37  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             eccchhhhhhhhcccccccc-cceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~-isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++|.+.|+...      .+ ++++.+ |++++++|++|+||||++..|++.+.
T Consensus        77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456777776521      46 788876 99999999999999999999999984

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.83  E-value=7.3e-06  Score=67.87  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=27.1

Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ...+|+|.+.+.-.     .+...++..|||+++.++++.|.
T Consensus       105 ~~~vv~~~~~l~e~-----~~~~~~d~vi~l~~~~e~~~~Rl  141 (206)
T 1jjv_A          105 APYTLFVVPLLIEN-----KLTALCDRILVVDVSPQTQLARS  141 (206)
T ss_dssp             SSEEEEECTTTTTT-----TCGGGCSEEEEEECCHHHHHHHH
T ss_pred             CCEEEEEechhhhc-----CcHhhCCEEEEEECCHHHHHHHH
Confidence            44788898654332     13566788999999999988875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.82  E-value=8.6e-06  Score=77.17  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=40.0

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+++++.+.|....    .+.++++++++|  +.|.||||+|||||+++|++..
T Consensus        41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence            34567776665433    678999999999  9999999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.79  E-value=1.1e-05  Score=66.67  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|+|+|||||||+++.|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            699999999999999999999 6

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.78  E-value=6e-06  Score=74.01  Aligned_cols=48  Identities=27%  Similarity=0.484  Sum_probs=38.8

Q ss_pred             ccchhhhhhhhcccccccccceecCCCeE--EEEECCCCCCHHHHHHHHHHHhc
Q 024225           81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        81 ~~l~~~y~~~~~~v~~l~~isl~i~~gei--vgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +++...|+...    +++.++..++.|++  +.|.||+|+||||+++++++.+.
T Consensus        22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            35566665433    55778888888988  99999999999999999999873

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.77  E-value=1.9e-05  Score=64.32  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=27.9

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +...+|.++.|.|++||||||+++.|+..+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999999983

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.77  E-value=1.5e-05  Score=66.50  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+.+|.++.|.|++||||||+++.|++.+
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            557889999999999999999999999998

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.72  E-value=1.8e-05  Score=80.02  Aligned_cols=72  Identities=13%  Similarity=0.067  Sum_probs=57.7

Q ss_pred             HHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCc--EEEEeCCCCCCChhhHHHHHHhhc-------cceEEec
Q 024225          192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATS  259 (270)
Q Consensus       192 ~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~--ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~  259 (270)
                      .+.+..++++   .+..+..+|+||+||++++.++...++  ++|+|||+..||+...+.+.++++       ..|+|+|
T Consensus       445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH  524 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH  524 (916)
T ss_dssp             HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred             HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            4456666664   245677999999999999999987665  999999999999988888877776       3488888


Q ss_pred             cccc
Q 024225          260 FKET  263 (270)
Q Consensus       260 ~~~~  263 (270)
                      |.+.
T Consensus       525 d~~~  528 (916)
T 3pih_A          525 DEEV  528 (916)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            8754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.71  E-value=2.1e-05  Score=63.74  Aligned_cols=27  Identities=41%  Similarity=0.704  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..|.+++|.|++||||||+++.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999999876

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.68  E-value=2.2e-05  Score=64.43  Aligned_cols=24  Identities=38%  Similarity=0.463  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.++|+|+||||||||++.|+|..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999999974

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.65  E-value=3e-05  Score=61.77  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|+|.|++||||||+++.|+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999999987

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.64  E-value=3.3e-05  Score=65.55  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=25.5

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.+|.+|+|+|++||||||+++.|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4678999999999999999999999977

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.63  E-value=4.2e-05  Score=64.47  Aligned_cols=35  Identities=20%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             cccc-ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           97 TSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        97 l~~i-sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |+.+ .--+++|++++|+||||||||||+..++...
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3443 3458899999999999999999966554443

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.63  E-value=4e-05  Score=63.88  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             cceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+++. ..+.+|+|||||||||++.+|.-.+.
T Consensus        17 ~~i~f~-~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           17 TVVEFK-EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEECC-SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeC-CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            344444 35899999999999999999987763

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.61  E-value=0.00014  Score=67.63  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=25.4

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.+++++|++||||||++..|+..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999984

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.61  E-value=4.8e-05  Score=65.55  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+++|+||+|||||||++.|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            478999999999999999999987

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.60  E-value=1.5e-05  Score=75.77  Aligned_cols=56  Identities=14%  Similarity=0.049  Sum_probs=47.3

Q ss_pred             CCC-CcccCChhhhhhhhccCC--cEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          207 PSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       207 ~~~-S~g~~~rv~~~~~l~~~~--~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      ..+ |+|++||+.++.++..++  ++||+|||+.++|......+.+++.      ..|+|+|+.+
T Consensus       395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~  459 (517)
T 4ad8_A          395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ  459 (517)
T ss_dssp             SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            356 999999999999999999  9999999999999977777777665      3478888754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.59  E-value=3.9e-05  Score=61.66  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.+|.|.|++||||||+++.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999999987

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.58  E-value=3.2e-05  Score=70.23  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=26.8

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|+++.|.||+|||||||+..++..+
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999999987

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.57  E-value=4.6e-05  Score=68.91  Aligned_cols=28  Identities=43%  Similarity=0.691  Sum_probs=25.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.+.+|+|+|++|||||||++.|.|.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            4589999999999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.54  E-value=3.2e-05  Score=66.50  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=28.8

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.. ....+.++.|+|++||||||+++.|+..+
T Consensus        24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4433 57789999999999999999999999987

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.53  E-value=0.00044  Score=62.05  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=24.5

Q ss_pred             CCCe--EEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKH--IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~ge--ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.  .+.|.||+|+|||||++.+++.+
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456  89999999999999999999998

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.53  E-value=4.1e-05  Score=61.48  Aligned_cols=27  Identities=37%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|..|+|+|++|+|||||++.|.+..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998853

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.52  E-value=6.4e-05  Score=61.06  Aligned_cols=27  Identities=22%  Similarity=0.489  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.+|.|.|++||||||+++.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999999877

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.51  E-value=2.7e-05  Score=70.75  Aligned_cols=44  Identities=18%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .+.+.++.+.|+...    +.++++|+|      +|+|++|+|||||++.|.+.
T Consensus        17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred             eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence            478899999998644    557887765      99999999999999999775

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.50  E-value=6.5e-05  Score=60.77  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.++.|.|++||||||+++.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999977

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.50  E-value=3.8e-05  Score=69.45  Aligned_cols=47  Identities=13%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++++.+.|+... ...+|++++++++   .|+|+|++|||||||++.|.|.
T Consensus        11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            456667775421 1236789999997   9999999999999999999993

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.49  E-value=6.6e-05  Score=61.22  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -.+++|+|++|||||||++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            36899999999999999999999873

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.46  E-value=7e-05  Score=64.10  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=25.0

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.++.+.++.|  +.|.||+|+|||||++.|++.+.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            35555556555  88999999999999999999873

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.46  E-value=8.1e-05  Score=62.07  Aligned_cols=24  Identities=42%  Similarity=0.601  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .+.+|+|.|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999988

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.46  E-value=7e-05  Score=60.49  Aligned_cols=28  Identities=32%  Similarity=0.502  Sum_probs=25.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..+.+|.|.|++||||||+++.|+..+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            3567889999999999999999999887

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.45  E-value=7.9e-05  Score=60.92  Aligned_cols=23  Identities=39%  Similarity=0.733  Sum_probs=22.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|.|++||||||+++.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.45  E-value=7.9e-05  Score=60.98  Aligned_cols=25  Identities=40%  Similarity=0.526  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +..+|+|+|++||||||+++.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.44  E-value=5e-05  Score=67.17  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.+|+|+|++|+|||||++.|.|.-
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            345689999999999999999999863

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.44  E-value=6.7e-05  Score=60.39  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.|+|++||||||+++.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999988

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.44  E-value=7e-05  Score=61.04  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=20.8

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +++++++..+.. .|+|+|++|+|||||++.+.+-
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            457888887665 6799999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.44  E-value=8.7e-05  Score=60.04  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+|.|+|++||||||+++.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999987

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.43  E-value=2.2e-05  Score=64.54  Aligned_cols=33  Identities=21%  Similarity=0.140  Sum_probs=28.3

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      +++++++..+.++ |+|+|++|+|||||++.+.+
T Consensus        15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            5688888887764 78999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.43  E-value=8.9e-05  Score=63.35  Aligned_cols=26  Identities=31%  Similarity=0.627  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.+++|.||+||||||+++.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.43  E-value=0.00016  Score=58.66  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            5899999999999999999999874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.41  E-value=9.6e-05  Score=74.71  Aligned_cols=71  Identities=13%  Similarity=0.067  Sum_probs=57.0

Q ss_pred             HHHHhhccC---CCcCCCCCCcccCChhhhhhhhccC--CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecc
Q 024225          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSF  260 (270)
Q Consensus       193 ~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~--~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~  260 (270)
                      +.++.++++   .+..+..+|+||+||++++.++..+  ++++|+|||+..||+...+.+.++++       ..|+|+|+
T Consensus       486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd  565 (972)
T 2r6f_A          486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD  565 (972)
T ss_dssp             HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            346666665   3556779999999999999999887  48999999999999977766666655       45899999


Q ss_pred             ccc
Q 024225          261 KET  263 (270)
Q Consensus       261 ~~~  263 (270)
                      .++
T Consensus       566 l~~  568 (972)
T 2r6f_A          566 EDT  568 (972)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.40  E-value=0.0001  Score=59.91  Aligned_cols=28  Identities=29%  Similarity=0.585  Sum_probs=25.3

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++.+|+|.|++||||||+++.|+..+
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999999887

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.40  E-value=0.00012  Score=60.28  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|.+|+|.|++||||||+++.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999999883

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.39  E-value=0.00011  Score=59.43  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.+|+|.|++||||||+++.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999999877

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.39  E-value=0.00011  Score=58.92  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .+|.|.|++||||||+++.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999998

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.37  E-value=0.00011  Score=60.31  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.+|+|.|+.||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.37  E-value=0.00011  Score=60.53  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+|.+|+|.|++||||||+++.|+..+.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999999998763

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.36  E-value=0.00019  Score=60.25  Aligned_cols=39  Identities=18%  Similarity=0.048  Sum_probs=30.0

Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ..+++++|-|+++=.    ..+...+|..|||+++.++++.|.
T Consensus       111 ~~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl  149 (210)
T 4i1u_A          111 QGPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARV  149 (210)
T ss_dssp             CSSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHH
T ss_pred             CCCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHH
Confidence            345788999866542    245678999999999999998774

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.35  E-value=8.5e-05  Score=58.96  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++|+|++|+|||||++.+.|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.35  E-value=4.7e-05  Score=62.99  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|+|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999883

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.34  E-value=0.00012  Score=60.04  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|.|++||||||+++.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999987

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.34  E-value=6.2e-05  Score=61.44  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=25.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..+.+|+|.|++||||||+++.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4457899999999999999999999987

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.34  E-value=0.00013  Score=60.22  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=25.5

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+|.+|+|.|++||||||+++.|+..+.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999999998873

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.29  E-value=0.00014  Score=63.85  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.7

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ....|.++.|.|||||||||+++.|+..+
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568999999999999999999998876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.29  E-value=9.9e-05  Score=59.46  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=19.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.+|.|.|++||||||+++.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56799999999999999999999877

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.27  E-value=0.00016  Score=58.49  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=22.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|.|.|++||||||+++.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999873

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.24  E-value=9.4e-05  Score=69.66  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++++...+....    .+.++++.+++|  +.|.||+|+|||||++.|++...
T Consensus        28 l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           28 LKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             HHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence            345544444322    457778888877  88999999999999999999873

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.23  E-value=0.00022  Score=59.52  Aligned_cols=26  Identities=42%  Similarity=0.603  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.+|.|.|++||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999999987

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.23  E-value=0.00044  Score=61.62  Aligned_cols=25  Identities=24%  Similarity=0.636  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.++.|+||+|||||||+..|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            5689999999999999999999876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.22  E-value=0.00023  Score=58.41  Aligned_cols=28  Identities=29%  Similarity=0.476  Sum_probs=24.8

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -..+.+|+|.|++||||||+++.|+..+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3456799999999999999999999876

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.22  E-value=0.00025  Score=71.00  Aligned_cols=69  Identities=12%  Similarity=-0.036  Sum_probs=55.7

Q ss_pred             HHHhhccC---CCcCCCCCCcccCChhhhhhhhccCC--cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225          194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK  261 (270)
Q Consensus       194 ~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~--~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~  261 (270)
                      .+..++++   .+.....+|+|++||++++.++...+  +++|+|||+..||+...+.+.++++       ..|+|+|+.
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            45556654   24567799999999999999999887  5999999999999977777776654       448999988


Q ss_pred             c
Q 024225          262 E  262 (270)
Q Consensus       262 ~  262 (270)
                      +
T Consensus       442 ~  442 (842)
T 2vf7_A          442 D  442 (842)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.22  E-value=0.00016  Score=58.13  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.|++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999884

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.22  E-value=0.00017  Score=59.46  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|.|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999998765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.21  E-value=0.00024  Score=57.32  Aligned_cols=26  Identities=38%  Similarity=0.615  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.+|+|.|++||||||+++.|+..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999887

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.21  E-value=0.00024  Score=58.34  Aligned_cols=27  Identities=41%  Similarity=0.636  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.+|+|.|++||||||+++.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999999987

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.19  E-value=0.00024  Score=65.29  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.8

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .+..+..++|+|+||+|||||++.|.|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4667889999999999999999999986

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.18  E-value=0.00025  Score=56.44  Aligned_cols=25  Identities=36%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -++++|.|+.||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999987

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.18  E-value=0.00042  Score=61.94  Aligned_cols=38  Identities=26%  Similarity=0.463  Sum_probs=31.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL  164 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~  164 (270)
                      .++.|+||+|||||||.+.|+..+.                   +.++..|....++
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~-------------------~~iis~Ds~qvy~   43 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP-------------------CELISVDSALIYR   43 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC-------------------EEEEEECTTTTBT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC-------------------CcEEeccchhhhc
Confidence            5899999999999999999999872                   4567777765543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.18  E-value=0.00019  Score=58.01  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|+|.|++||||||+++.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999987

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=97.16  E-value=0.00022  Score=58.12  Aligned_cols=49  Identities=12%  Similarity=0.097  Sum_probs=41.1

Q ss_pred             cCCCCCCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      ..+..+|+|+++|++++.+++.    +++++|+|||+..||+.....+.+++.
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~  112 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIK  112 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHH
Confidence            3456799999999999988863    468999999999999987777777765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.16  E-value=0.00025  Score=58.80  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998877

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.16  E-value=0.00026  Score=57.28  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|.|+.||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999987

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.15  E-value=0.00023  Score=56.72  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|+|.|++||||||+++.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.15  E-value=0.00016  Score=58.44  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999885

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.14  E-value=0.00025  Score=62.37  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+.++..+.|.||+|+|||||++.|++.+
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            446788999999999999999999999987

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.13  E-value=0.00045  Score=62.11  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.++.|+||.|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46799999999999999999999887

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.12  E-value=0.00017  Score=65.15  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=25.9

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -+++|+++.|.||+|||||||+..++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            37799999999999999999998888765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.12  E-value=0.00026  Score=59.39  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=23.3

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.+|.|.|++||||||+++.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999999876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.11  E-value=0.00033  Score=55.59  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999987

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.11  E-value=0.00037  Score=59.45  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=25.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++-+|+|.||+||||||+++.|+..+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.11  E-value=0.00026  Score=59.17  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.+|.|.|++||||||+++.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999887

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.10  E-value=0.0004  Score=58.61  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=27.0

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +-...+..+|.|+||+||||+|.++.|+..+
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3446778999999999999999999999987

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.09  E-value=0.0003  Score=58.38  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999998876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.06  E-value=0.00078  Score=59.88  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=23.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.++.|+||+|||||||+..|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            5689999999999999999999886

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.03  E-value=0.00046  Score=59.44  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.+|.|.|++||||||+++.|+..+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999875

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.01  E-value=0.00038  Score=66.03  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll   84 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence            457888999999 99999999999999999999987

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.00  E-value=0.00035  Score=68.43  Aligned_cols=31  Identities=26%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++++++++.++|+|++|+|||||++.|++..
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~   33 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKT   33 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence            4567889999999999999999999999876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.95  E-value=0.00059  Score=63.34  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.++|+|+||+|||||++.|.|..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            3589999999999999999999974

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.92  E-value=0.001  Score=59.69  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=26.7

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.91  E-value=0.00044  Score=58.42  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|+|||||++.|.|..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            568999999999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.91  E-value=0.0011  Score=61.06  Aligned_cols=25  Identities=32%  Similarity=0.674  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+++|+||+|||||||+..|+..+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC
Confidence            3579999999999999999999887

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.91  E-value=0.00047  Score=62.65  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|+|++|||||||++.|+|..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            49999999999999999999865

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.90  E-value=0.00053  Score=62.20  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             CCCCcccCChhhh------hhhhccC-CcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225          207 PSFDHGVGDPVED------DILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE  262 (270)
Q Consensus       207 ~~~S~g~~~rv~~------~~~l~~~-~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~  262 (270)
                      ..+|+||++++.+      +.++... ++++|+|||+..+|+.....+.+++..      .|.++|+.+
T Consensus       279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~  347 (371)
T 3auy_A          279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE  347 (371)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence            4789999998854      4555668 999999999999999888877777652      355666543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.90  E-value=0.00054  Score=59.84  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ...+.|.||+|+||||+++.|++.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            46899999999999999999999983

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.90  E-value=0.00062  Score=57.14  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999877

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.87  E-value=0.00058  Score=56.94  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|-+|.|.|+.||||||+++.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999999987

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.85  E-value=0.00046  Score=59.67  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|||||||++.|.|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999874

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.85  E-value=0.00057  Score=61.51  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus        36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34444458999999999999999999999888876

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.83  E-value=0.00063  Score=56.47  Aligned_cols=25  Identities=40%  Similarity=0.607  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+++|.|++||||||+++.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4679999999999999999999986

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.81  E-value=0.00092  Score=56.35  Aligned_cols=26  Identities=38%  Similarity=0.566  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+..|.|.|+.||||||+++.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999887

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.80  E-value=0.00072  Score=56.12  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.78  E-value=0.00095  Score=55.49  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999999874

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.74  E-value=0.00072  Score=61.60  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.-++|+|++||||||+++.|...+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999998873

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.74  E-value=0.00086  Score=52.34  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.73  E-value=0.0009  Score=58.37  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .+|.|.|++||||||+++.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.0011  Score=53.37  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...-.|+|+|++|+|||||++.|.+..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344589999999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.73  E-value=0.0012  Score=55.44  Aligned_cols=28  Identities=39%  Similarity=0.510  Sum_probs=25.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+|.+|.|.|++||||||+++.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999884

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.72  E-value=0.001  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .++|+|+.|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.70  E-value=0.0013  Score=58.60  Aligned_cols=29  Identities=17%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            47899999999999999999999998865

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.70  E-value=0.00098  Score=51.80  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.69  E-value=0.001  Score=52.59  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++.-.|+|+|++|+|||||++.+.+-
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999874

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.69  E-value=0.0016  Score=61.81  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .+++++.++.-+.|+|.+||||||+++.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            3678888899999999999999999998875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.69  E-value=0.00088  Score=59.79  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+..+.|.||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999873

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.68  E-value=0.001  Score=51.79  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.68  E-value=0.0014  Score=52.06  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+..+.|.||+|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            4457789999999999999999999873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.67  E-value=0.0012  Score=57.42  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=24.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.-+.|.||+|+||||+++.|++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            56789999999999999999999987

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.67  E-value=0.0012  Score=55.16  Aligned_cols=23  Identities=43%  Similarity=0.732  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.|+||+||||+|.++.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999877

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.66  E-value=0.001  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+++|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.66  E-value=0.00092  Score=56.72  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+|.+|.|.|++||||||+++.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999999884

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.66  E-value=0.00094  Score=61.63  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=25.8

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.-..+.+|.|+|++||||||+++.|+..+
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            445568999999999999999999998765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.65  E-value=0.0011  Score=51.80  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998763

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.64  E-value=0.00072  Score=57.11  Aligned_cols=30  Identities=20%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.+..|+.+.|.||+||||||++..+...
T Consensus        70 i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           70 LEAISQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            334667999999999999999988776543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.64  E-value=0.0012  Score=56.30  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=25.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|.+|.|.|++||||||+++.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999884

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.63  E-value=0.0011  Score=51.83  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.63  E-value=0.0011  Score=51.66  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.63  E-value=0.0025  Score=59.36  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.++.++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999884

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.63  E-value=0.0012  Score=51.56  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.62  E-value=0.0013  Score=52.06  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.62  E-value=0.0012  Score=52.20  Aligned_cols=23  Identities=39%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.61  E-value=0.0013  Score=55.65  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.+|+|.|+.||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999999987

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.61  E-value=0.0011  Score=51.89  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999999875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.60  E-value=0.00092  Score=52.65  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46899999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.001  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999873

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.60  E-value=0.0015  Score=53.45  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+.|.||+|+|||||++.|+..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            7889999999999999999999873

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.58  E-value=0.0017  Score=50.79  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +.-.|+|+|++|+|||||++.+.+-
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4467999999999999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.57  E-value=0.0013  Score=51.95  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.56  E-value=0.0018  Score=54.71  Aligned_cols=29  Identities=17%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -.+|.+|.|.|++||||||+++.|...+.
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35689999999999999999999999884

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.55  E-value=0.0011  Score=57.79  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.|.|.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999985

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.54  E-value=0.0014  Score=51.11  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999874

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.54  E-value=0.0016  Score=57.98  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .+++..+++ .|.-+.|.|+||+||||++..|.+.
T Consensus       134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            567777887 6899999999999999999999873

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.53  E-value=0.0014  Score=52.81  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.|.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999885

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.53  E-value=0.0014  Score=52.16  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.|.+..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999998753

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.53  E-value=0.0017  Score=54.54  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|.+|.|-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999999884

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.52  E-value=0.0015  Score=52.24  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.51  E-value=0.0012  Score=51.68  Aligned_cols=22  Identities=45%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.51  E-value=0.0017  Score=56.07  Aligned_cols=28  Identities=36%  Similarity=0.552  Sum_probs=25.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..+.-+.|.||+|+|||||++.|+..+
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4566779999999999999999999987

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.50  E-value=0.0016  Score=50.78  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|+|++|+|||||++.+.+-.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.50  E-value=0.0018  Score=54.45  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+|.+|.|-|++||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999999983

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.48  E-value=0.00088  Score=52.36  Aligned_cols=22  Identities=45%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5899999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.47  E-value=0.0023  Score=51.35  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.|+|+|+.|+|||||++.|.+..
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCc
Confidence            4569999999999999999998863

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.46  E-value=0.0016  Score=54.15  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++..-+++ .|..|.|+||+|+|||||+..|+...
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            345555555 47889999999999999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.45  E-value=0.0017  Score=51.55  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            56899999999999999999874

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.45  E-value=0.0013  Score=52.80  Aligned_cols=24  Identities=33%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.+.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            347899999999999999998875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.45  E-value=0.0013  Score=53.04  Aligned_cols=25  Identities=28%  Similarity=0.427  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ..-.|+|+|+.|+|||||++.|.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.44  E-value=0.0017  Score=51.32  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.44  E-value=0.0018  Score=51.09  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.44  E-value=0.0011  Score=53.15  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ..-.|+|+|++|+|||||++.+.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.44  E-value=0.0019  Score=51.77  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999998865

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.44  E-value=0.0016  Score=51.34  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.43  E-value=0.0019  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+-
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999877664

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.43  E-value=0.001  Score=52.56  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.|.+.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.43  E-value=0.0016  Score=51.50  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.43  E-value=0.002  Score=51.74  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.|.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.42  E-value=0.0018  Score=51.35  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+..+.|.||+|+|||||++.++..+.
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999873

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.40  E-value=0.002  Score=51.09  Aligned_cols=23  Identities=39%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.0019  Score=53.41  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.+++|+|+.|+|||||++.|++.+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999999876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.38  E-value=0.0024  Score=50.56  Aligned_cols=25  Identities=16%  Similarity=0.040  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +.-.|+|+|+.|+|||||++.+.+-
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999998864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.38  E-value=0.0021  Score=52.90  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|+|||||++.|.+..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.38  E-value=0.002  Score=52.29  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.37  E-value=0.0024  Score=52.55  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+.|.||+|+|||||++.++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4899999999999999999998873

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.37  E-value=0.00096  Score=57.29  Aligned_cols=28  Identities=21%  Similarity=0.190  Sum_probs=24.3

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++.+|+|.|+.||||||+++.|+..+
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578899999999999999999998876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.37  E-value=0.00092  Score=57.23  Aligned_cols=33  Identities=36%  Similarity=0.586  Sum_probs=25.9

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.....+.|  +.|.||+|+|||||++.|+..+.
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence            3444445555  77999999999999999999873

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.37  E-value=0.0022  Score=52.06  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.36  E-value=0.0018  Score=51.55  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            568999999999999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.36  E-value=0.0014  Score=52.31  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998874

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.36  E-value=0.0016  Score=59.07  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++++++++.+| +++|+|||||||||++++|.++.
T Consensus        16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence            458899999999 99999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.35  E-value=0.0021  Score=51.68  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+.-
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.34  E-value=0.0014  Score=58.99  Aligned_cols=27  Identities=33%  Similarity=0.322  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...-.++|+|++|+|||||++.|++..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.34  E-value=0.0029  Score=53.56  Aligned_cols=28  Identities=39%  Similarity=0.549  Sum_probs=24.3

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..+.-+.|.||+|+||||+++.|+..+
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3445668899999999999999999987

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.33  E-value=0.0024  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999865

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.33  E-value=0.002  Score=58.52  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+||+|++|+|||||++.|.+..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999974

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.33  E-value=0.0022  Score=51.43  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+.
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.32  E-value=0.0023  Score=50.87  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+-
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.31  E-value=0.0025  Score=51.25  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.|.+.
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.31  E-value=0.0021  Score=51.96  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.30  E-value=0.002  Score=56.82  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+..+.|.||+|+|||||++.|+..+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45678999999999999999999987

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.30  E-value=0.0025  Score=51.79  Aligned_cols=24  Identities=42%  Similarity=0.338  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|+|||||++.+.|..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~~   30 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGVH   30 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCc
Confidence            468999999999999999998753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.30  E-value=0.0017  Score=51.64  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .+.-.|+|+|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999988863

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.28  E-value=0.002  Score=56.83  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|.+|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999885

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.28  E-value=0.0015  Score=57.84  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=21.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.|.||+|+||||+++.|++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999987

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.0022  Score=52.58  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .++.|.-...-.|+|+|+.|+|||||++.+.+-
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            444444444567999999999999999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.27  E-value=0.0025  Score=51.21  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.27  E-value=0.0026  Score=57.76  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +..++|+|.+|+|||||++.|.+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            357899999999999999999984

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.27  E-value=0.002  Score=56.82  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +.-+|+|+|.+|+|||||++.|.|.
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3468999999999999999999885

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.25  E-value=0.0031  Score=51.23  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++.-.|+|+|+.|+|||||++.+.+.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34567999999999999999999875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.25  E-value=0.0018  Score=60.12  Aligned_cols=27  Identities=37%  Similarity=0.573  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.+|+|+|++|+||||++..|++.+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346999999999999999999999873

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.25  E-value=0.0026  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.24  E-value=0.0026  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999853

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0026  Score=51.25  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            468999999999999999998864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.23  E-value=0.0023  Score=56.65  Aligned_cols=36  Identities=17%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345555558999999999999999999998887654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.23  E-value=0.0026  Score=51.78  Aligned_cols=27  Identities=26%  Similarity=0.186  Sum_probs=22.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.-.|+|+|+.|+|||||++.+.+..
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            345678999999999999999998853

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0033  Score=50.64  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.+.+-
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            357899999999999999999874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.22  E-value=0.0024  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|+|||||++.+.+..
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999988753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.22  E-value=0.0021  Score=54.79  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999999874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.21  E-value=0.0028  Score=51.04  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.+.+-
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.21  E-value=0.0021  Score=55.23  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|.+|||||||++.|.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999986

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.20  E-value=0.0025  Score=50.43  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0032  Score=50.46  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            578999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.18  E-value=0.0034  Score=53.35  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.+||+|+.||||||+++.|+..+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            568999999999999999999887

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.18  E-value=0.0032  Score=50.78  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|++|+|||||++.+.+-.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            568999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0038  Score=50.48  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +.-.|+|+|+.|+|||||++.+.+-
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457999999999999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.18  E-value=0.0063  Score=54.75  Aligned_cols=28  Identities=36%  Similarity=0.544  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -....+|+|+|+.|+|||||+..|++.+
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456799999999999999999999887

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.18  E-value=0.0026  Score=50.85  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=21.9

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++.-.|+|+|+.|+|||||++.+.+-
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45567999999999999999998763

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.17  E-value=0.0026  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.|.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.16  E-value=0.0025  Score=51.79  Aligned_cols=23  Identities=13%  Similarity=0.222  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.14  E-value=0.0016  Score=53.16  Aligned_cols=23  Identities=43%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999998764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.13  E-value=0.0037  Score=54.70  Aligned_cols=29  Identities=34%  Similarity=0.540  Sum_probs=25.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.+..+.|.||+|+|||+|++.|+..+.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45567788999999999999999999873

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.12  E-value=0.0036  Score=50.41  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            56899999999999999988874

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.12  E-value=0.0028  Score=54.51  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|.+|+|||||++.|.|..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            468999999999999999999853

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.11  E-value=0.0044  Score=51.54  Aligned_cols=26  Identities=35%  Similarity=0.667  Sum_probs=23.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      |.+|+|=|+-||||||+++.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999999883

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.11  E-value=0.0036  Score=51.31  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.|+|+|+.|+|||||++.+.+-.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568999999999999999998753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.10  E-value=0.0032  Score=52.13  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ....++|+|.+|+|||||++.++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998875

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.10  E-value=0.0035  Score=58.70  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=27.9

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.+-+|+.++|.|++|+|||||++.|+....
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            5677899999999999999999999988763

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.09  E-value=0.003  Score=55.83  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999988865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.08  E-value=0.0034  Score=50.32  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .+.-.|+|+|+.|+|||||++.+.+-
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999853

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.08  E-value=0.0032  Score=58.43  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.-+.|.||+|+|||||++.|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999873

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.08  E-value=0.0034  Score=51.66  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|++|+|||||++.+.+.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999885

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.08  E-value=0.0042  Score=50.64  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ..-.|+|+|+.|+|||||++.+.+-
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.05  E-value=0.0041  Score=50.62  Aligned_cols=33  Identities=27%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++..-+++ .|.-|.|.|+||+|||||+..|...
T Consensus         7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A            7 WHANFLVI-DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            34444444 4889999999999999999888763

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.03  E-value=0.0038  Score=59.13  Aligned_cols=29  Identities=7%  Similarity=0.061  Sum_probs=26.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++|.+|.|+|.+||||||+.+.|+..+.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999994

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.03  E-value=0.0025  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.03  E-value=0.0038  Score=52.25  Aligned_cols=25  Identities=36%  Similarity=0.490  Sum_probs=22.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~  128 (270)
                      +++|+++.|.|++|+|||||+--++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999986554

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.00  E-value=0.0031  Score=57.14  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHH-Hh
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RI  131 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~g-ll  131 (270)
                      ++..+++.+ .+..|.|+|||||||++..|.= ++
T Consensus        17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~~l~   50 (371)
T 3auy_A           17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFFALF   50 (371)
T ss_dssp             EEEEEECCS-EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cceEEecCC-CeEEEECCCCCCHHHHHHHHHHHHc
Confidence            445555544 6899999999999999999986 44

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.00  E-value=0.0031  Score=54.63  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|+|+|.+|||||||++.|.|.-
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.99  E-value=0.0021  Score=55.58  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|.+|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998664

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.98  E-value=0.0037  Score=50.94  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0039  Score=50.18  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.96  E-value=0.0038  Score=52.05  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998774

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.95  E-value=0.0024  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.|.+.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.95  E-value=0.0033  Score=50.19  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.+.+-
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.94  E-value=0.0033  Score=51.65  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.94  E-value=0.0023  Score=50.87  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=9.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.93  E-value=0.0028  Score=51.01  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ..-.|+|+|+.|+|||||++.+.+.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999998764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.93  E-value=0.0053  Score=58.99  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.|.+|.|.|.+||||||+++.|...+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999987

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.93  E-value=0.0034  Score=54.96  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|||||||++.|.|.
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCC
Confidence            46999999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.92  E-value=0.005  Score=50.01  Aligned_cols=23  Identities=35%  Similarity=0.704  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.90  E-value=0.0015  Score=53.86  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.|.+.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457899999999999999998775

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.90  E-value=0.0022  Score=51.55  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.|+|+|+.|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999987754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.89  E-value=0.0055  Score=53.30  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+.-+.|.||+|+||||+++.++..+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456799999999999999999999874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.89  E-value=0.005  Score=47.83  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=23.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.-|.|.||+|+|||++++.|....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            345568999999999999999998875

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.84  E-value=0.0054  Score=50.70  Aligned_cols=25  Identities=16%  Similarity=0.319  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-+|+|.|+.||||||+.+.|+..+
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999999998

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.84  E-value=0.0038  Score=51.48  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998763

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.83  E-value=0.0045  Score=55.18  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+..+.|.||+|+|||||++.++..+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            567789999999999999999999987

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.83  E-value=0.0052  Score=50.13  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            46899999999999999998764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.81  E-value=0.0056  Score=55.31  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|.++.|.|++|+|||||+..++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999998888765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.81  E-value=0.01  Score=56.17  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++.+|+|+|++|+||||++..|+..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999998774

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.0054  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.80  E-value=0.0047  Score=56.95  Aligned_cols=46  Identities=17%  Similarity=0.362  Sum_probs=37.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -++++|+ +.|++.       .  .+++..|++++|+||||||||||+++|.+++.
T Consensus         6 ~l~~~~~-~~~~~~-------~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A            6 GLELSNF-KSYRGV-------T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EEEEESC-SSCCSE-------E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCE-EEECCc-------e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3788888 788541       1  24567799999999999999999999999984

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.79  E-value=0.005  Score=49.84  Aligned_cols=26  Identities=19%  Similarity=0.196  Sum_probs=20.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .+.-.|+|+|+.|+|||||++.+.+-
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.79  E-value=0.0042  Score=50.37  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.|+|+|++|+|||||++.+.+..
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            3568999999999999999877743

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.78  E-value=0.0064  Score=58.97  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.+|.|.|.+||||||+++.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999987

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.77  E-value=0.014  Score=54.22  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.-.+..+++++|++|+||||++-.|+..+.
T Consensus        94 ~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A           94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33334578999999999999999999998874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.76  E-value=0.0069  Score=53.72  Aligned_cols=28  Identities=39%  Similarity=0.450  Sum_probs=24.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++.-+.|.||+|+|||||++.++..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            3456778999999999999999999986

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.75  E-value=0.0048  Score=51.37  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|.+|+|||||++.+.+.
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998763

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.74  E-value=0.0073  Score=57.34  Aligned_cols=27  Identities=22%  Similarity=0.508  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.+|.++|.+||||||+.+.|+..+
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.73  E-value=0.0061  Score=50.99  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++...+.|.||+|+||||++..|+..+
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            6666679999999999999999999998

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.73  E-value=0.0063  Score=49.23  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .+.-.|+|+|+.|+|||||++.+.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999998854

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.71  E-value=0.0061  Score=50.34  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.+.+-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999998874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.71  E-value=0.0049  Score=52.85  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|..|+|||||++.|.+.
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.69  E-value=0.0045  Score=53.62  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.|+|+|.+|+|||||++.|.|.-
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            3479999999999999999998863

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.69  E-value=0.0069  Score=49.50  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=21.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +.-.|+|+|+.|+|||||++.+.+.
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3467899999999999999988864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.67  E-value=0.0058  Score=49.94  Aligned_cols=24  Identities=13%  Similarity=0.008  Sum_probs=21.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-.|+|+|+.|+|||||++.+.+-
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999998864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.67  E-value=0.0063  Score=54.62  Aligned_cols=26  Identities=38%  Similarity=0.569  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.-+.|.||+|+||||+++.|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999987

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.66  E-value=0.0081  Score=48.94  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCCCCHHHHH-HHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLA-AEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLl-k~L~gll  131 (270)
                      +|.++.|.||.||||||++ +++....
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999998 5555444

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.66  E-value=0.0026  Score=59.28  Aligned_cols=24  Identities=50%  Similarity=0.724  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.|.||+|+|||||++.|+..+.
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhC
Confidence            489999999999999999999873

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.64  E-value=0.0024  Score=51.81  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=5.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.+.+.
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57899999999999999988876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.63  E-value=0.0074  Score=52.24  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.-+.|.||+|+||||+++.|+..+.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            345688999999999999999999883

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.62  E-value=0.0054  Score=52.76  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+++|++|+|||||++.|.+.
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.58  E-value=0.0089  Score=55.81  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.+|.++|.+||||||+++.|+..+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999876

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.57  E-value=0.0091  Score=53.24  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             cCCCeEEEEECCCCCCHHHHHH-HHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAA-EVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk-~L~gll  131 (270)
                      +++| ++-|.||+|+|||||+- .++...
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence            6789 89999999999999964 444444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.57  E-value=0.0088  Score=51.27  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ....-+.|.||+|+|||||++.|+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            455778899999999999999999987

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.55  E-value=0.006  Score=52.68  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..++|+|.+|+|||||++.|.|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            589999999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.52  E-value=0.0081  Score=53.56  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|..+.|.||+|+|||||++.++..+
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999999998

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.49  E-value=0.0095  Score=53.26  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+..+.|.||+|+|||||++.++..+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999987

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.47  E-value=0.0076  Score=55.90  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus       190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44454458899999999999999999998888765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.47  E-value=0.01  Score=53.31  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ....-+.|.||+|+|||||++.|+..+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999986

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.46  E-value=0.0027  Score=52.26  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|+.|+|||||++.|.+.
T Consensus        12 ~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           12 YKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEECCTTSSHHHHHCBCTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999988753

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.44  E-value=0.01  Score=56.73  Aligned_cols=27  Identities=37%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.|.+|.|.|++||||||+++.|...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999877

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.40  E-value=0.0047  Score=57.49  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+|+|.+|+|||||++.|.|.
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47999999999999999999874

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.39  E-value=0.0069  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      +.-.|+|+|+.|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            456799999999999999998853

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.38  E-value=0.012  Score=51.98  Aligned_cols=27  Identities=41%  Similarity=0.530  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.-+.|.||+|+|||+|++.|+..+
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            345678999999999999999999987

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.36  E-value=0.0099  Score=54.44  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK  133 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~  133 (270)
                      |.-+.+.+|+..+|+|++|+|||||+..|+....+
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~  201 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE  201 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence            45577999999999999999999999999988753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.013  Score=54.37  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=25.3

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.+..=+.|.||+|+|||+|++.|++.++
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            55566689999999999999999999883

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.013  Score=54.27  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=26.2

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -++...=|.|.||+|+|||+|++.|++...
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            356667788999999999999999999874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.27  E-value=0.0092  Score=53.25  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -+.+|.++.|.||+|+|||||+..++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4677888999999999999999998765

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.013  Score=54.42  Aligned_cols=30  Identities=40%  Similarity=0.566  Sum_probs=26.0

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.+..=|.|.||+|+|||+|++.|++.+.
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            356667788999999999999999999874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.22  E-value=0.032  Score=47.16  Aligned_cols=27  Identities=37%  Similarity=0.527  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.-++.+.|..|+|||||+..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456889999999999999999999887

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.22  E-value=0.0098  Score=52.34  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +-.|+|+|++|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467899999999999999998765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.21  E-value=0.014  Score=51.51  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.-+.|.||+|+|||+|++.|+..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.20  E-value=0.011  Score=52.04  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.|.||+|+|||||++.|+..+
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            458899999999999999999887

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.19  E-value=0.015  Score=48.92  Aligned_cols=25  Identities=12%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-+|+|.|+.||||||+.+.|+..+
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999988

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.19  E-value=0.011  Score=51.53  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+-.++|+|.+|+|||||++.|.|.-
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCc
Confidence            345689999999999999999998753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.18  E-value=0.012  Score=53.00  Aligned_cols=25  Identities=32%  Similarity=0.627  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.-+.|.||+|+||||+++.|+..+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	1e-17
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	2e-14
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	1e-13
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	6e-12
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	1e-09
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	3e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	8e-05
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-04
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	5e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	5e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.001
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.002
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.002
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.003
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.003
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.004
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.004
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.004

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 78.6 bits (193), Expect = 1e-17
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+ +AG    GKST A  +   +++             +   V  ++  DGF      L 
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 227
                +    ++G P +++   L+  + +L++   +V AP + H + D + D     +Q 
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185

Query: 228 KVVIVDGNYLFLDGGVWKD------VSSMFDEKCY 256
            ++I++G  +   G  +        VS   D   Y
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIY 220

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 30/166 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST+        ++I+ ++             A  +  D FH + 
Sbjct: 2   KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47

Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
            + + A  D + A         +        L    +     G     ++ H   +    
Sbjct: 48  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 107

Query: 220 DILVGLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256
            +  G             ++  +G +  +      +++ + D K  
Sbjct: 108 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKIG 152

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (163), Expect = 1e-13
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 26/166 (15%)

Query: 82  CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
            +D   + L + +       +       +  +GP G+GKS  + ++   + + +  + S 
Sbjct: 4   VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60

Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNL 198
                          +D F+L       + +  + +     RG P T +  LL   L  +
Sbjct: 61  ----------IGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 110

Query: 199 RNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
            N              Y  S   G GD       + L   + I++G
Sbjct: 111 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 156

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 6e-12
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 15/159 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +                    +L  D F+  L+   
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             +  K        P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 55  KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267
           VV+ +G   F      ++V  +F  K +  +  +T  +R
Sbjct: 113 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSR 147

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 22/179 (12%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
                      V  MD   +  ++     + +               L     + L+   
Sbjct: 54  ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASH 101

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFK 261
            +  P +DH   D      +      +++++G +L            ++ +      F 
Sbjct: 102 QLTLPFYDH-ETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFA 159

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   + 
Sbjct: 21  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76

Query: 133 KIWPQKASS 141
               + A  
Sbjct: 77  AAGHKVAVL 85

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        + 
Sbjct: 24  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79

Query: 133 KIW 135
           +  
Sbjct: 80  REG 82

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           HI  L G  G+GKS +A+EV  +++  +
Sbjct: 7   HIYVLMGVSGSGKSAVASEVAHQLHAAF 34

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
           K +  + GP G GKST    +  +++
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLD 27

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
             ++ L G   AGKS +   +   +    P+   +F        +   +      +    
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNC 194
              +    E  A  GA       +    
Sbjct: 59  DGGVSIGPEFRALEGAWAEGVVAMARAG 86

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           K I+   G PG+GKST A E + +    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFY 30

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 82  CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
                 +ALA+  L    + A   +V  I G  G  G GK+TLA   V+R+++    K  
Sbjct: 20  VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78

Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
               Q                L + Q       + A A  
Sbjct: 79  LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           ++  A   G GK+TL  +++  +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCA 28

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +V + G PG G +T +   +  + K
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRK 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ L+G PG+GKST+A  +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPG 29

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
            ++ + G P  GK+ ++ ++ R +N I
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI 29

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           I  + G PG GKST+ A+V   ++ 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDN 27

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +  + G   +GK+TL  + V    +
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
            + L G   +GK  +A  +   +N+
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQ 32

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           +H+  L GPPG GK+TL  +    +  
Sbjct: 2   RHV-FLTGPPGVGKTTLIHKASEVLKS 27

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           +V + G PG+GK T  A +VR   
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFG 31

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++I  L GP GAGKST+  ++ +++N  +
Sbjct: 3   RNIF-LVGPMGAGKSTIGRQLAQQLNMEF 30

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           ++ + GP GAGK TL   +   + 
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQ 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.94
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.93
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.92
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.9
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.74
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.51
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.5
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	99.3
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.16
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.0
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.94
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.02
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.01
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.95
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.93
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.92
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.9
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.84
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.84
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.78
d1okkd2	207	GTPase domain of the signal recognition particle r	97.75
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.74
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.74
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.72
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.72
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.67
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.67
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.65
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.64
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.63
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.63
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.59
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.56
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.55
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.54
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.47
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.45
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.4
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.39
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.39
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.38
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.37
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.36
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.35
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.35
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.34
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.33
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.32
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.29
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.28
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.28
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.26
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.23
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.22
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.19
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.14
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.14
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.13
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.12
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.12
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.09
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.07
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.07
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.05
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.03
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.03
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.02
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.01
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.0
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.99
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.97
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.95
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.93
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.93
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.86
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.86
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.85
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.83
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.82
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.78
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.74
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.7
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.7
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.67
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.65
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.65
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.64
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.63
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.6
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.53
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.52
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.48
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.47
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.46
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.45
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.41
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.4
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.4
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.39
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.37
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.35
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.35
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.35
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.35
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.32
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.32
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.29
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.26
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.23
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.22
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.21
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.2
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.19
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.17
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.17
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.15
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.12
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.1
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.09
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.07
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.06
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.04
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.03
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.03
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.02
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.01
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.01
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.88
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.85
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.85
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.83
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.82
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.76
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.73
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.69
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.67
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.66
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.66
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.65
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.64
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.63
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.5
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.49
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.48
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.47
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.4
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.4
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.36
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.31
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.29
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.26
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.21
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.18
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.09
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.98
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.92
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.84
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.74
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.72
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.66
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.56
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.54
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.46
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.44
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.35
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.28
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.04
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.01
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.95
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.94
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.82
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.74
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.68
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.48
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.88
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.78
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.77
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.51
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.42
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.4
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.99
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.98
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.92
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.85
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.46
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.45
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.35
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.31
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.06
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.88
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.68
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.65
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.45
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.35
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.3
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.97
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.89
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.64
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.5
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.37
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.21
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.1
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	88.87
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.36
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.22
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.66
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.2
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.14
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.16
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.8
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.49
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	83.83
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	83.45
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.16
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.12

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2.8e-33  Score=239.82  Aligned_cols=180  Identities=14%  Similarity=0.160  Sum_probs=134.2

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-  149 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-  149 (270)
                      |..|+++||+|.|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|++ +++...   .+ 
T Consensus         4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~   76 (239)
T d1v43a3           4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   76 (239)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence            45689999999998744    8899999999999999999999999999999999996   888883 443211   11 


Q ss_pred             --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (270)
Q Consensus       150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~  225 (270)
                        ..| +++++.. + .+.+++.++..+.....+.+.........++++.+++.  .+.++..+|+||+||++++++++.
T Consensus        77 ~r~ig-~v~Q~~~-l-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          77 DRNIS-MVFQSYA-V-WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             GGTEE-EEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             cceEE-EEeechh-h-cccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence              234 3666643 2 22366666655544444544333445566778877765  467788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +|++||+|||+..||+..+.++.+++.        ..|++|||.+.+
T Consensus       154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a  200 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA  200 (239)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred             CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence            999999999999999977776666555        238999998654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.2e-33  Score=236.40  Aligned_cols=178  Identities=14%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------CCC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------~p~  150 (270)
                      |+++||+|.|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|++ +++...      ...
T Consensus         1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~   73 (232)
T d2awna2           1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG   73 (232)
T ss_dssp             EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence            68899999998744    8899999999999999999999999999999999996   999994 444311      112


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      .| +++++.. + .+.+++.++..+.....+.+.........++++.+.+..  +.++..+||||+||+++++++..+|+
T Consensus        74 ig-~v~Q~~~-l-~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~  150 (232)
T d2awna2          74 VG-MVFQSYA-L-YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS  150 (232)
T ss_dssp             EE-EECSSCC-C----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCS
T ss_pred             ee-eeccccc-c-ccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            34 3777653 2 234788888887777777766655667788888877753  56778999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      +|++|||+..+|+....++.+++.        ..|+++||.+++.
T Consensus       151 illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~  195 (232)
T d2awna2         151 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM  195 (232)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHH
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999999999999976666665554        2389999986553

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=9.3e-34  Score=241.79  Aligned_cols=183  Identities=15%  Similarity=0.129  Sum_probs=133.9

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C--C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P--P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~--p---  149 (270)
                      +|+++||+|.|+...+.+.+|+|+||+|++||++||+||||||||||+++|+|+++   |++|++ +++... .  +   
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence            47899999999876556778999999999999999999999999999999999995   888874 444211 1  1   


Q ss_pred             -----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCc---cHHHHHHHHHhhccCC---CcCCCCCCcccCChhh
Q 024225          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF---NPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE  218 (270)
Q Consensus       150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~---~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~  218 (270)
                           ....+++++.. + .+.+++.++..+.....+.....   ....+.+.++.+.+..   +.++.++||||+||++
T Consensus        78 ~~~r~~~ig~v~Q~~~-l-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRva  155 (230)
T d1l2ta_          78 TKIRRDKIGFVFQQFN-L-IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA  155 (230)
T ss_dssp             HHHHHHHEEEECTTCC-C-CTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred             chhhcceEEEEecchh-h-CcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHH
Confidence                 11234666642 2 22366666665544433322211   2233456666666643   4567799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      ++++++.+|++|++|||+..||+..++.+.+++.        ..|+|+||.+++
T Consensus       156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a  209 (230)
T d1l2ta_         156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA  209 (230)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH
T ss_pred             HHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH
Confidence            9999999999999999999999977766666655        238999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.3e-33  Score=237.86  Aligned_cols=184  Identities=16%  Similarity=0.131  Sum_probs=146.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      +|+++||+|.|+.....+.||+||||+|++||++||+||||||||||+++|+|+++   |++|++ +++...   .+   
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence            47899999999875555678999999999999999999999999999999999996   888984 444211   11   


Q ss_pred             ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                          ....+++++. .++ +.+++.++..+.....+.+.........++++.+++.  .+.++..+||||+||+++++++
T Consensus        78 ~~~rr~ig~VfQ~~-~l~-~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL  155 (240)
T d3dhwc1          78 TKARRQIGMIFQHF-NLL-SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL  155 (240)
T ss_dssp             HHHHHHEEECCSSC-CCC-TTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccc-ccC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhh
Confidence                1234477664 332 3477888888777777877666567778889988775  3567789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      +.+|++||+|||+..||+....++.+++.        ..++|+||.+++.
T Consensus       156 ~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~  205 (240)
T d3dhwc1         156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK  205 (240)
T ss_dssp             HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHH
T ss_pred             ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHH
Confidence            99999999999999999977777776665        2389999986653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.97  E-value=4.5e-33  Score=238.81  Aligned_cols=180  Identities=14%  Similarity=0.120  Sum_probs=143.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-------
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-------  146 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-------  146 (270)
                      |+.|+++||+|.|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|++ +++..       
T Consensus         1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence            46799999999998743    8899999999999999999999999999999999996   999984 33311       


Q ss_pred             --C---CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhh
Q 024225          147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (270)
Q Consensus       147 --~---~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~  219 (270)
                        .   ....| +++++.. + .+.+++.++..+.....+.+.......+.++++.+.+..  +.++.++||||+||+++
T Consensus        74 ~~~~~~~r~ig-~v~Q~~~-L-~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I  150 (240)
T d1g2912          74 IFVPPKDRDIA-MVFQSYA-L-YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (240)
T ss_dssp             EECCGGGSSEE-EECSCCC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             hhcccccccce-ecccchh-h-cchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence              0   11234 4776653 2 234788888888777787765555566778888877653  56778999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +++++.+|++||+|||+..+|+..+..+.+++.        ..|+++||.+++
T Consensus       151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~  203 (240)
T d1g2912         151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA  203 (240)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred             HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH
Confidence            999999999999999999999977777766665        238999998654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=1.1e-32  Score=236.29  Aligned_cols=183  Identities=13%  Similarity=0.126  Sum_probs=142.9

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-------
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-------  146 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-------  146 (270)
                      |..|+++||+|.|+..  .+.+|+||||+|++||++||+||||||||||+++|+|++.   |++|++ +++..       
T Consensus         1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence            4568999999999753  3557899999999999999999999999999999999996   999984 44421       


Q ss_pred             -CC--CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhh
Q 024225          147 -KP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (270)
Q Consensus       147 -~~--p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~  221 (270)
                       ..  .....+++++.. + .+.+++.++..+.....+++.......+.++++.+++.  .+.++.++||||+||+++++
T Consensus        76 ~~~~~rr~ig~vfQ~~~-L-~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiAR  153 (242)
T d1oxxk2          76 IVPPEDRKIGMVFQTWA-L-YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR  153 (242)
T ss_dssp             SSCGGGSCEEEEETTSC-C-CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred             hcchhhccceEEecccc-c-cccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHh
Confidence             11  112334777653 2 23478888877766666665444456678888888875  36678899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY  264 (270)
Q Consensus       222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~  264 (270)
                      +++.+|++|++|||+..+|+....++.++++        ..|++|||.+.+
T Consensus       154 aL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~  204 (242)
T d1oxxk2         154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI  204 (242)
T ss_dssp             HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred             HHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence            9999999999999999999987777777665        238999997654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=1.5e-31  Score=227.70  Aligned_cols=175  Identities=14%  Similarity=0.167  Sum_probs=136.5

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---P  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---p  149 (270)
                      +|+++||+|.|++ .    +|+||||+|++||++||+||||||||||+|+|+|++.   |++|++ +++...   .   .
T Consensus         1 mi~v~nlsk~y~~-~----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r   72 (229)
T d3d31a2           1 MIEIESLSRKWKN-F----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (229)
T ss_dssp             CEEEEEEEEECSS-C----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEeCC-E----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence            4789999999975 2    6899999999999999999999999999999999996   888883 444211   1   1


Q ss_pred             CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCC
Q 024225          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (270)
Q Consensus       150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~  227 (270)
                      ..|. ++++.. ++ +.+++.++..+.....+..   +.....++++.+++.  .+.++..+|+||+||+++++++..+|
T Consensus        73 ~ig~-v~Q~~~-l~-~~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P  146 (229)
T d3d31a2          73 DIAF-VYQNYS-LF-PHMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (229)
T ss_dssp             TCEE-ECTTCC-CC-TTSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             ccee-eccccc-cC-ccccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccC
Confidence            2344 666643 22 3377888777766666653   345677788877775  35567799999999999999999999


Q ss_pred             cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      ++||+|||+..+|+...+++.+++.        ..|+++||.+++.
T Consensus       147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~  192 (229)
T d3d31a2         147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR  192 (229)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHH
Confidence            9999999999999977766666664        2488999886543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=4e-31  Score=227.38  Aligned_cols=179  Identities=17%  Similarity=0.160  Sum_probs=122.3

Q ss_pred             ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CC---
Q 024225           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PP---  149 (270)
Q Consensus        76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p---  149 (270)
                      .+|+++||+|.|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|++ +++...  .+   
T Consensus         5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~   77 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence            4799999999998744    8899999999999999999999999999999999995   777773 333211  11   


Q ss_pred             --CceE-EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHH---hhccCCCcCCCCCCcccCChhhhhhhh
Q 024225          150 --DVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---NLRNQGSVYAPSFDHGVGDPVEDDILV  223 (270)
Q Consensus       150 --~~g~-~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---~l~~~~~~~~~~~S~g~~~rv~~~~~l  223 (270)
                        ..|. +++++. .+ .+.+++.++........ ............+++   .+....+.++..+|+||+||+++++++
T Consensus        78 ~~r~gi~~~~q~~-~l-~~~ltv~en~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL  154 (240)
T d1ji0a_          78 INRMGIALVPEGR-RI-FPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL  154 (240)
T ss_dssp             HHHTTEEEECSSC-CC-CTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred             HHHhcccccCccc-cc-CCcccHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHH
Confidence              1121 122222 11 12245544332211111 111111112223333   333445667789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      ..+|++||+|||+.++|+..+.++.++++       ..++++|+.++.
T Consensus       155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~  202 (240)
T d1ji0a_         155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA  202 (240)
T ss_dssp             TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred             HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            99999999999999999977777777766       237888887554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=5.7e-31  Score=228.49  Aligned_cols=179  Identities=15%  Similarity=0.123  Sum_probs=131.1

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---  149 (270)
                      .|+++||+|.|++..    +|+||||+|++||++||+||||||||||+++|+|+++   |++|++ +++....   +   
T Consensus         2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~   74 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   74 (258)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence            489999999998744    7899999999999999999999999999999999985   667763 3332110   0   


Q ss_pred             --------------CceEEeecCCCCccccccCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCc
Q 024225          150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDH  211 (270)
Q Consensus       150 --------------~~g~~i~~dg~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~  211 (270)
                                    ....+++++. .+ .+.+++.++..+. ....+...........++++.+.+..   +.++.++||
T Consensus        75 ~~~~~~~~~~~~~r~~ig~vfQ~~-~l-~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSG  152 (258)
T d1b0ua_          75 QLKVADKNQLRLLRTRLTMVFQHF-NL-WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG  152 (258)
T ss_dssp             SEEESCHHHHHHHHHHEEEECSSC-CC-CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred             hcccccHhHHHHHhcceEEEEech-hh-ccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccH
Confidence                          0122244443 22 2224555554433 23344443333455667777777753   456779999


Q ss_pred             ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      ||+||+++++++..+|++||+|||+..+|+..+.++.+++.       ..++|+||.+++
T Consensus       153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~  212 (258)
T d1b0ua_         153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA  212 (258)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH
Confidence            99999999999999999999999999999987777777776       248999988664

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=5.4e-31  Score=228.44  Aligned_cols=181  Identities=14%  Similarity=0.115  Sum_probs=122.4

Q ss_pred             cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CCC
Q 024225           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPD  150 (270)
Q Consensus        75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p~  150 (270)
                      |.+|+++||+|.|++..    +|+||||++++||++||+||||||||||+|+|+|+++   |++|++ +++...   .|.
T Consensus         2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence            67899999999998754    8899999999999999999999999999999999994   555552 332211   110


Q ss_pred             ----c-eEEeecCCCCccccccCcccChHHHH------------HhcCCCCC-ccHHHHHHHHHhhccC--CCcCCCCCC
Q 024225          151 ----V-ATVLPMDGFHLYLSQLDAMEDPKEAH------------ARRGAPWT-FNPLLLLNCLKNLRNQ--GSVYAPSFD  210 (270)
Q Consensus       151 ----~-g~~i~~dg~~~~~~~l~~~~~~~~~~------------~~~g~~~~-~~~~~~~~~l~~l~~~--~~~~~~~~S  210 (270)
                          . ..+++++....  +.+++.++.....            .+...... .......++++.+...  .+.++..||
T Consensus        75 ~~~~~gi~~v~Q~~~~~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  152 (254)
T d1g6ha_          75 ELYHYGIVRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS  152 (254)
T ss_dssp             HHHHHTEEECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred             HHHHhcCCccCCccccC--CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCC
Confidence                0 11133332211  1233333332110            01111111 1112344556655543  345677999


Q ss_pred             cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      +|++||+++++++..+|++||+|||+.++|+...+++.+++.       ..++++|+.++.
T Consensus       153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~  213 (254)
T d1g6ha_         153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV  213 (254)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred             cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            999999999999999999999999999999977777766665       238888888654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.3e-30  Score=222.17  Aligned_cols=178  Identities=13%  Similarity=0.070  Sum_probs=127.6

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC------C
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK------P  148 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~------~  148 (270)
                      .|+++||+|.|+..+    +|+|+||++++||++||+||||||||||+++|+|+++   |++|++ +++. ..      +
T Consensus         2 aI~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~   74 (238)
T d1vpla_           2 AVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR   74 (238)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred             CEEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHH
Confidence            378999999998855    7899999999999999999999999999999999995   677763 2221 11      1


Q ss_pred             CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (270)
Q Consensus       149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~  226 (270)
                      ...+. ++++....  ..+++.++..+....++.........+..+++.+.+.  .+.++..||+||+||+++++++..+
T Consensus        75 ~~i~~-vpq~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~  151 (238)
T d1vpla_          75 KLISY-LPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN  151 (238)
T ss_dssp             TTEEE-ECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred             hhEeE-eeeccccC--CCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            12232 44433211  2245555554444444433222223345556655554  3456779999999999999999999


Q ss_pred             CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225          227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY  264 (270)
Q Consensus       227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~  264 (270)
                      |++||+|||+.++|+..++.+.++++       ..++++|+.++.
T Consensus       152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~  196 (238)
T d1vpla_         152 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV  196 (238)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred             CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            99999999999999987777777775       237778877554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=4.6e-29  Score=209.02  Aligned_cols=178  Identities=15%  Similarity=0.170  Sum_probs=121.7

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCc--eE
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDV--AT  153 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~--g~  153 (270)
                      .|+++||++.|+. .    +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|++ +++.......  ..
T Consensus         2 ~lev~~ls~~y~~-~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred             eEEEEEEEEEeCC-e----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence            4899999999953 2    6799999999999999999999999999999999994   666663 3332111111  11


Q ss_pred             EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (270)
Q Consensus       154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl  232 (270)
                      +++.+..  ....++..++.......++..  .+...+.+.++.+... .+..+.++|+||+||+.++.++..+++++|+
T Consensus        74 ~~~~~~~--~~~~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llll  149 (200)
T d1sgwa_          74 FLPEEII--VPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL  149 (200)
T ss_dssp             EECSSCC--CCTTSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             EEeeccc--CCCCcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEE
Confidence            1222111  112234334444444444432  2345566677766643 3445679999999999999999999999999


Q ss_pred             eCCCCCCChhhHHHHHHhhc------cceEEeccccchhh
Q 024225          233 DGNYLFLDGGVWKDVSSMFD------EKCYATSFKETYFN  266 (270)
Q Consensus       233 d~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~~~~  266 (270)
                      |||+..+|+..++.+.+.+.      -.+.+.++++.++.
T Consensus       150 DEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~~~  189 (200)
T d1sgwa_         150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC  189 (200)
T ss_dssp             ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTS
T ss_pred             cCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhhhc
Confidence            99999999976666555444      23666776665543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.94  E-value=4.3e-29  Score=214.79  Aligned_cols=171  Identities=18%  Similarity=0.149  Sum_probs=116.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC--------CC
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ--------VK  147 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~--------~~  147 (270)
                      +++++||++.|++.+   .+|+||||+|++||++||+||||||||||+++|+|+++   |++|++ +++.        ..
T Consensus         1 mle~knvsf~Y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           1 MLSARHVDFAYDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             CEEEEEEEECSSSSS---CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             CEEEEEEEEECCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence            489999999997632   26799999999999999999999999999999999996   888883 3332        01


Q ss_pred             CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---------C----cCCCCCCcccC
Q 024225          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVG  214 (270)
Q Consensus       148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---------~----~~~~~~S~g~~  214 (270)
                      +...+ +++++.+. +.  -+..++.     .++.............++......         +    .....+|+||+
T Consensus        75 r~~i~-~v~Q~~~l-f~--~ti~eNi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk  145 (242)
T d1mv5a_          75 RSQIG-FVSQDSAI-MA--GTIRENL-----TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (242)
T ss_dssp             TTTCC-EECCSSCC-CC--EEHHHHT-----TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             HhheE-EEcccccc-CC--cchhhhe-----ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence            12233 36776542 21  1221111     123223334444444444333221         1    11236999999


Q ss_pred             ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      ||+++++++..+|++||+|||+..+|+...+.+.+.++      ..|+|+|+.+
T Consensus       146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  199 (242)
T d1mv5a_         146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS  199 (242)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHH
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            99999999999999999999999999855444444443      3478888764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-28  Score=211.30  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~  156 (270)
                      .|+++||++.|++.. ...+|+||||+|++||++||+||||||||||+++|+|++                .|+.|. |.
T Consensus        11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~----------------~p~~G~-I~   72 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY----------------QPTGGQ-LL   72 (251)
T ss_dssp             CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS----------------CCSEEE-EE
T ss_pred             eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc----------------CCCcCE-EE
Confidence            499999999998632 245789999999999999999999999999999999999                555665 55


Q ss_pred             cCCCCccccccCcccChHHHHH--------------------hcCCCCCccHHHHH---------HHHHhhccCC----C
Q 024225          157 MDGFHLYLSQLDAMEDPKEAHA--------------------RRGAPWTFNPLLLL---------NCLKNLRNQG----S  203 (270)
Q Consensus       157 ~dg~~~~~~~l~~~~~~~~~~~--------------------~~g~~~~~~~~~~~---------~~l~~l~~~~----~  203 (270)
                      +||.++....      ....++                    .+|...........         ..++.+..+.    .
T Consensus        73 i~g~~i~~~~------~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~  146 (251)
T d1jj7a_          73 LDGKPLPQYE------HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD  146 (251)
T ss_dssp             ETTEEGGGBC------HHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC
T ss_pred             ECCEecchhh------hHHHHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHh
Confidence            6665443210      111111                    22222111111211         1222222222    2


Q ss_pred             cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE  262 (270)
Q Consensus       204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~  262 (270)
                      ..+..+|+||+||+++++++..+++++|+|||+..+|+....++.+.+.        ..|+|+|+.+
T Consensus       147 ~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~  213 (251)
T d1jj7a_         147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS  213 (251)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred             ccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence            2345799999999999999999999999999999999988777776664        2388888764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.8e-28  Score=209.39  Aligned_cols=161  Identities=17%  Similarity=0.154  Sum_probs=110.6

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~  157 (270)
                      |+++||++.|+...  ..+|+||||+|++||++||+||||||||||+++|+|++                .|+.|. |.+
T Consensus         2 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~----------------~p~~G~-I~i   62 (241)
T d2pmka1           2 ITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY----------------IPENGQ-VLI   62 (241)
T ss_dssp             EEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS----------------CCSEEE-EEE
T ss_pred             eEEEEEEEEeCCCC--cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC----------------CCCCCE-EEE
Confidence            68899999997533  23679999999999999999999999999999999999                444444 444


Q ss_pred             CCCCccccccCcccChHHHHHhcCC-CC------------------CccHHHHHHHHHhhc---------cCCC----cC
Q 024225          158 DGFHLYLSQLDAMEDPKEAHARRGA-PW------------------TFNPLLLLNCLKNLR---------NQGS----VY  205 (270)
Q Consensus       158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~------------------~~~~~~~~~~l~~l~---------~~~~----~~  205 (270)
                      ||.++...      ..+..++..++ ++                  ....+......+...         .+.+    ..
T Consensus        63 ~g~~i~~~------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~  136 (241)
T d2pmka1          63 DGHDLALA------DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ  136 (241)
T ss_dssp             TTEETTTS------CHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTT
T ss_pred             CCEEeccc------chhhhhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCC
Confidence            54433210      01112222222 11                  122222222222111         1111    23


Q ss_pred             CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET  263 (270)
Q Consensus       206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~  263 (270)
                      ...+|+||+||+++++++..+++++|+|||+..||+...+.+.+.+.      ..|+|+|+.+.
T Consensus       137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~  200 (241)
T d2pmka1         137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST  200 (241)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred             CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            45899999999999999999999999999999999977766666665      34888888753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=4.1e-27  Score=203.57  Aligned_cols=173  Identities=12%  Similarity=0.103  Sum_probs=115.2

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------  149 (270)
                      -|+++||++.|++..  ..+|+||||+|++||++||+||||||||||+++|+|++.   |++|++ +++.....      
T Consensus        13 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          13 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             EEEEEEEEEEeCCCC--CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhh
Confidence            489999999998633  447799999999999999999999999999999999994   455542 22210000      


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccCCC----cCCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~----~~~~~~S~g~~~  215 (270)
                       ....+++++.+...   .+.     .....++.+...+.+.+.+.++         .+..+.+    ..+..+|+||+|
T Consensus        88 r~~i~~v~Q~~~l~~---~ti-----~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ  159 (253)
T d3b60a1          88 RNQVALVSQNVHLFN---DTV-----ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ  159 (253)
T ss_dssp             HHTEEEECSSCCCCS---SBH-----HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred             hheEEEEeeccccCC---cch-----hhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHH
Confidence             01122333332111   011     1111233333344444433322         2222222    234579999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      |+++|+++..+++++|+|||+..+|+.....+.+.+.      ..|+|+|+.+
T Consensus       160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  212 (253)
T d3b60a1         160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS  212 (253)
T ss_dssp             HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred             HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence            9999999999999999999999999977777766665      3388888875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=6.7e-28  Score=205.97  Aligned_cols=172  Identities=12%  Similarity=0.091  Sum_probs=122.1

Q ss_pred             EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC------CCCCC
Q 024225           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ------VKPPD  150 (270)
Q Consensus        78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~------~~~p~  150 (270)
                      +++ ++.|.|++..      -|+||+++ +|+++|+||||||||||+|+|+|+++   |++|++ +++.      ..+..
T Consensus         3 l~v-~~~k~~g~~~------~~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r~   71 (240)
T d2onka1           3 LKV-RAEKRLGNFR------LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRG   71 (240)
T ss_dssp             EEE-EEEEEETTEE------EEEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSC
T ss_pred             EEE-EEEEEECCEE------EEEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHcC
Confidence            566 6788998743      38999996 68999999999999999999999996   888884 3331      11112


Q ss_pred             ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCc
Q 024225          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (270)
Q Consensus       151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~  228 (270)
                      .|. ++++.. + .+.+++.++..+..  .+.........+.++++.+++.  .+.++.++||||+||++++++++.+|+
T Consensus        72 ig~-v~Q~~~-l-~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~  146 (240)
T d2onka1          72 IGF-VPQDYA-L-FPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CBC-CCSSCC-C-CTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             cee-eccchh-h-cccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence            343 555542 2 22356655544321  1112112234566777777665  356778999999999999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225          229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF  265 (270)
Q Consensus       229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~  265 (270)
                      +|++|||+..+|+..+..+.+++.        ..|+++|+.+++.
T Consensus       147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~  191 (240)
T d2onka1         147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA  191 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred             ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence            999999999999977777666664        3488999876543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=1.4e-27  Score=206.57  Aligned_cols=172  Identities=13%  Similarity=0.071  Sum_probs=113.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---  149 (270)
                      -|+++||++.|++..  ..+|+||||+|++|+++||+||||||||||+++|+|++.   |++|++ +++...   .+   
T Consensus        16 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          16 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             EEEEEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHh
Confidence            389999999998643  336799999999999999999999999999999999994   455542 222100   00   


Q ss_pred             -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCc----CCCCCCcccCC
Q 024225          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD  215 (270)
Q Consensus       150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~~~  215 (270)
                       ....++.++.+. +.  .+..+|.     .+|.+. ...+.+.+.++...         .+.+.    ....+|+||+|
T Consensus        91 r~~i~~v~Q~~~l-f~--~Ti~eNi-----~~g~~~-~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~Q  161 (255)
T d2hyda1          91 RNQIGLVQQDNIL-FS--DTVKENI-----LLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ  161 (255)
T ss_dssp             HHTEEEECSSCCC-CS--SBHHHHH-----GGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred             hheeeeeeccccC-CC--CCHHHHH-----hccCcC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHH
Confidence             011223333321 11  1222111     122221 12233333333222         12121    23479999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE  262 (270)
Q Consensus       216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~  262 (270)
                      |+++++++..+++++|+|||+..+|+...+.+.+.+.      ..|+|+|+.+
T Consensus       162 Ri~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~  214 (255)
T d2hyda1         162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS  214 (255)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999999999999999999999987777777765      3488888775

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.8e-26  Score=195.98  Aligned_cols=168  Identities=18%  Similarity=0.115  Sum_probs=114.4

Q ss_pred             eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CC--
Q 024225           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PD--  150 (270)
Q Consensus        77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~--  150 (270)
                      +++++||++.|        +|++|||+|++||++||+||||||||||+++|+|+.    +++|++ +++....   +.  
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~~   70 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATKL   70 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHHH
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCceEEEECCEECCcCCHHHH
Confidence            68999998776        579999999999999999999999999999999975    666763 3432111   10  


Q ss_pred             --ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc-
Q 024225          151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL-  225 (270)
Q Consensus       151 --~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~-  225 (270)
                        ...++.+.....+.  .+.    .... .++.......+.+.++++.+.+..  ..++..+|+||+||++++.++.. 
T Consensus        71 ~~~~~~~~~~~~~~~~--~~v----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~  143 (231)
T d1l7vc_          71 ALHRAYLSQQQTPPFA--TPV----WHYL-TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI  143 (231)
T ss_dssp             HHHEEEECSCCCCCSS--CBH----HHHH-HHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HhhceeeeccccCCcc--ccH----HHHh-hhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence              11223322211110  111    1111 122222334455667777776653  44567899999999999998753 


Q ss_pred             ------CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225          226 ------QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET  263 (270)
Q Consensus       226 ------~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~  263 (270)
                            .|++||+|||+..+|......+.++++       ..++++|+.+.
T Consensus       144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~  194 (231)
T d1l7vc_         144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNH  194 (231)
T ss_dssp             CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHH
T ss_pred             CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                  668999999999999977777777776       23777777654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.2e-24  Score=189.01  Aligned_cols=148  Identities=11%  Similarity=0.093  Sum_probs=98.9

Q ss_pred             cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccChH
Q 024225           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (270)
Q Consensus        96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~  174 (270)
                      +|+|+||+|++||++||+||||||||||+++|+|++.   |++|.+ +++     . ..++.++.....   .+      
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g-----~-i~~v~Q~~~l~~---~t------  112 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSG-----R-VSFCSQFSWIMP---GT------  112 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCS-----C-EEEECSSCCCCS---EE------
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECC-----E-EEEEeccccccC---ce------
Confidence            6799999999999999999999999999999999994   444442 221     1 112333332111   11      


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHhhcc---------CCC----cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225          175 EAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe  241 (270)
                       .+...-+....+......+++....         +.+    .....+|+||+||+++++++..+++++|+|||+..+|+
T Consensus       113 -v~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~  191 (281)
T d1r0wa_         113 -IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  191 (281)
T ss_dssp             -HHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred             -eeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCH
Confidence             2222222223344444444443221         111    12346999999999999999999999999999999998


Q ss_pred             hhHHHHHHh-hc------cceEEecccc
Q 024225          242 GVWKDVSSM-FD------EKCYATSFKE  262 (270)
Q Consensus       242 ~~~~~l~~~-~~------~~i~v~~~~~  262 (270)
                      ...+.+.+. +.      ..|+|+|+.+
T Consensus       192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~  219 (281)
T d1r0wa_         192 FTEEQVFESCVCKLMANKTRILVTSKME  219 (281)
T ss_dssp             HHHHHHHHHCCCCCTTTSEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEechHH
Confidence            877777653 33      3377777763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.6e-19  Score=157.13  Aligned_cols=148  Identities=20%  Similarity=0.278  Sum_probs=117.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~  184 (270)
                      +..-+|||.|++||||||+++.|..++.+..            ......++++|||+.++..+..    .....++|+|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~------------~~~~v~~Is~D~F~~~~~~l~~----~~~~~~~g~Pe  141 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWP------------EHRRVELITTDGFLHPNQVLKE----RGLMKKKGFPE  141 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTST------------TCCCEEEEEGGGGBCCHHHHHH----HTCTTCTTSGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhc------------CCCceEEEeeeeeECCchHHHH----hcCCccCCchH
Confidence            4567999999999999999999999984100            1234566999999876533221    11234678899


Q ss_pred             CccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHH------HHHhhccceEE
Q 024225          185 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD------VSSMFDEKCYA  257 (270)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~------l~~~~~~~i~v  257 (270)
                      ++|...+.+.+..++.+. .+..|.||+...+++.....+...++|||+||.+++.|+..|..      +.+++|++|||
T Consensus       142 s~D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifv  221 (308)
T d1sq5a_         142 SYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV  221 (308)
T ss_dssp             GBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEE
T ss_pred             hhhHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeee
Confidence            999999999999998774 68899999999888877766777889999999999999764443      89999999999


Q ss_pred             eccccchhhcc
Q 024225          258 TSFKETYFNRE  268 (270)
Q Consensus       258 ~~~~~~~~~r~  268 (270)
                      +++.++++.|+
T Consensus       222 da~~~~~~~r~  232 (308)
T d1sq5a_         222 DAPEDLLQTWY  232 (308)
T ss_dssp             ECCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            99998887764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.51  E-value=8.7e-16  Score=133.58  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=96.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCcccc-ccCcccChHHHH--HhcCC--C
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS-QLDAMEDPKEAH--ARRGA--P  183 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~-~l~~~~~~~~~~--~~~g~--~  183 (270)
                      +|||.|+|||||||+++.|...+.+              ......++.+|+|+.++. .+..........  ..+.+  |
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~--------------~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P   71 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSY   71 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh--------------cCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCc
Confidence            8999999999999999999988841              223455699999975421 111000000011  11222  6


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhh---------hhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDD---------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~---------~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~  254 (270)
                      .+++.+.+.+.++.++.++....|.|++....+....         ..+..++++||+||.+.++.... ..+++++|.+
T Consensus        72 ~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~-~~ir~~~Dlk  150 (288)
T d1a7ja_          72 EANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLK  150 (288)
T ss_dssp             GGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSS-CBCGGGCSEE
T ss_pred             ccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccch-hhhHhhcCeE
Confidence            6788899999999999999999999998776654321         12345678999999999983211 2589999999


Q ss_pred             eEEeccccchhhcc
Q 024225          255 CYATSFKETYFNRE  268 (270)
Q Consensus       255 i~v~~~~~~~~~r~  268 (270)
                      |||+++.+.++.||
T Consensus       151 IfVd~d~dlrliRR  164 (288)
T d1a7ja_         151 IGVVPVINLEWIQK  164 (288)
T ss_dssp             EEEEECHHHHHHHH
T ss_pred             EEEECCCCeEEEee
Confidence            99999999999886

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.7e-15  Score=121.23  Aligned_cols=146  Identities=22%  Similarity=0.370  Sum_probs=100.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHh--cCCC
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RGAP  183 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--~g~~  183 (270)
                      ++-+|||.|++|||||||++.|+..+....-+.         ......++.+|+|+...   ............  +..+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~---------~~~~~~vi~~D~yy~~~---~~~~~~~~~~~~~~~~~~   68 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDY---------RQKQVVILSQDSFYRVL---TSEQKAKALKGQFNFDHP   68 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCG---------GGCSEEEEEGGGGBCCC---CHHHHHHHHTTCSCTTSG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccc---------CCCceEEEecccccccc---chhhhhhhhhcccccCCc
Confidence            357899999999999999999999874111000         11235569999986331   111100011111  1224


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET  263 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~  263 (270)
                      ..++...+.+.+..+..+.....|.|+.....+......+ ...+++|+||.+++.+    ..+.+++|.+|||+++.++
T Consensus        69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiveg~~~l~~----~~l~~~~D~~i~v~~~~~~  143 (213)
T d1uj2a_          69 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTV-YPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADT  143 (213)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEE-CCCSEEEEECTTTTSS----HHHHHHCSEEEEEECCHHH
T ss_pred             HHHHHHHHHhhhhhhhcCCcccccccccccccccCceEEe-cccceEEecchhhhcc----HHHHhhhheeeeecCCHHH
Confidence            4566677778888888888877788877766665543322 4688999999999998    4788999999999999999


Q ss_pred             hhhcc
Q 024225          264 YFNRE  268 (270)
Q Consensus       264 ~~~r~  268 (270)
                      ++.|+
T Consensus       144 ~~~R~  148 (213)
T d1uj2a_         144 RLSRR  148 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98885

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=7.4e-13  Score=114.93  Aligned_cols=126  Identities=21%  Similarity=0.331  Sum_probs=87.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcc---cChHHHHHhcC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM---EDPKEAHARRG  181 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~---~~~~~~~~~~g  181 (270)
                      +.+-+|||.|+.|||||||++.|.-.+.+-+   |        ......++++|+|++...+....   .........+|
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~---~--------~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG   93 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY---G--------GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRG   93 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH---G--------GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSC
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHh---C--------CCcceEeeccCCCCCCHHHHHHHhhhccccccceecC
Confidence            3467999999999999999998876652100   0        11234558999998764221111   00011334579


Q ss_pred             CCCCccHHHHHHHHHhhccCC------CcCCCCCCc----ccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225          182 APWTFNPLLLLNCLKNLRNQG------SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (270)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~~~------~~~~~~~S~----g~~~rv~~~~~l~~~~~ilIld~~~~~lDe  241 (270)
                      .|.++|...+.++++.|..+.      .+.+|.|+.    |.++|......+..+++|||+||.+++..+
T Consensus        94 ~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p  163 (286)
T d1odfa_          94 LPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP  163 (286)
T ss_dssp             STTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred             CCcchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccc
Confidence            999999999999999998653      478899985    456777665566778999999999988865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.16  E-value=1e-11  Score=100.19  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~  183 (270)
                      -...-+|||.|++|||||||++.|...+..              .......+..++++..................  ..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   82 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--------------QGISVCVFHMDDHIVERAKRYHTGNEEWFEYY--YL   82 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--------------TTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHH--HT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc--------------ccccceeccccccccCHHHHHHhhcccccccC--cc
Confidence            345678999999999999999999988741              22233446777765443222211111111100  11


Q ss_pred             CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc
Q 024225          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET  263 (270)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~  263 (270)
                      ...........+..+..+.....+.++.....+.... ......+++++|+.+++..     .+.+.++..||++++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivi~e~~~~~~~-----~~~~~~d~~i~l~~~~e~  156 (198)
T d1rz3a_          83 QWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRT-VYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPREI  156 (198)
T ss_dssp             SSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEEEE-EECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC---
T ss_pred             hHHHHHHHHHHHHHhhccCccccccchhhhccccccc-cccccccccccccchhccc-----cccccceeeeeccCcHHH
Confidence            1122222334444555556665565555444333222 2334567899999887765     668889999999999999


Q ss_pred             hhhccC
Q 024225          264 YFNREA  269 (270)
Q Consensus       264 ~~~r~~  269 (270)
                      ++.|+.
T Consensus       157 ~~~R~~  162 (198)
T d1rz3a_         157 RFAREN  162 (198)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            998863

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.94  E-value=2.8e-12  Score=102.41  Aligned_cols=44  Identities=11%  Similarity=-0.157  Sum_probs=32.6

Q ss_pred             CCcccCChhhhhhhhccCCcEEEEeCCCCC--CChhhHHHHHHhhc
Q 024225          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLF--LDGGVWKDVSSMFD  252 (270)
Q Consensus       209 ~S~g~~~rv~~~~~l~~~~~ilIld~~~~~--lDe~~~~~l~~~~~  252 (270)
                      .+.++.++..++.+....++++++||+...  .+...+..+.++++
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~  127 (178)
T d1ye8a1          82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH  127 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc
Confidence            346677788888888889999999996433  34566777777776

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.02  E-value=1.8e-06  Score=67.07  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+|.+|.|+|++||||||+++.|+..|+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5799999999999999999999998884

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.8e-06  Score=65.65  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998873

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.9e-06  Score=65.80  Aligned_cols=28  Identities=39%  Similarity=0.617  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.+.++.|.||+||||||+++.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5689999999999999999999999983

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.93  E-value=4.8e-06  Score=64.85  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+++|+|++|||||||+..|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999998888874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=3.4e-07  Score=74.55  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=32.0

Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhccC
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNREA  269 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~~  269 (270)
                      ...+++++|.+.++-.     .+...++..|||+++.++++.|+.
T Consensus       103 ~~~~~vv~e~~ll~e~-----~~~~~~d~ii~v~~~~~~r~~R~~  142 (205)
T d1jjva_         103 QTAPYTLFVVPLLIEN-----KLTALCDRILVVDVSPQTQLARSA  142 (205)
T ss_dssp             CCSSEEEEECTTTTTT-----TCGGGCSEEEEEECCHHHHHHHHC
T ss_pred             ccCCeEEEEecccccc-----chhhhhhheeeecchHHHHHHHHH
Confidence            3567889998887643     556788999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.90  E-value=2.9e-06  Score=65.93  Aligned_cols=26  Identities=38%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|++|.|.||+||||||+++.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998876

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=4.3e-06  Score=66.27  Aligned_cols=25  Identities=40%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.+|.|+||||||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999999998875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.84  E-value=5e-06  Score=64.34  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+|.|.|++||||||+++.|+..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999999998

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.75  E-value=7e-05  Score=60.83  Aligned_cols=43  Identities=23%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH  161 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~  161 (270)
                      +++.+++++||+|+||||.+--|+..+.+              ......++..|.|.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~--------------~g~kV~lit~Dt~R   46 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN--------------LGKKVMFCAGDTFR   46 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHT--------------TTCCEEEECCCCSS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCcEEEEEecccc
Confidence            35789999999999999998777877641              33455668888874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=7.1e-06  Score=63.72  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -..|+|.||+|||||||++.|+..++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36799999999999999999999873

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.74  E-value=9.2e-06  Score=62.90  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|-.|.|.||+||||||+++.|+..+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            567789999999999999999999887

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.74  E-value=8.5e-06  Score=62.63  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.|.||+||||||+++.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999999987

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.2e-06  Score=62.00  Aligned_cols=24  Identities=42%  Similarity=0.700  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .|.|+||+||||||+++.|+..++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            578889999999999999999984

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.72  E-value=9.8e-06  Score=61.55  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++|.|.|++|||||||++.|...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999988654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=5.4e-06  Score=65.48  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|.+|.|.|++||||||+++.|+..+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999999884

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1e-05  Score=62.74  Aligned_cols=25  Identities=40%  Similarity=0.643  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..|.|.||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3588999999999999999999984

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.67  E-value=1.3e-05  Score=62.27  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=23.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+|+|.|++||||||+++.|+..++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999884

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=8.9e-07  Score=69.89  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=27.5

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+.++++.+| +..|+|||||||||++.+|.-.+
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            35556666544 88899999999999999998776

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.63  E-value=1.4e-05  Score=61.50  Aligned_cols=22  Identities=41%  Similarity=0.733  Sum_probs=20.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.|+||+||||||+++.|+..+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999999887

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.63  E-value=1.7e-05  Score=62.97  Aligned_cols=27  Identities=37%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.+|.|+||+||||||+++.|+..+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999987

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.61  E-value=0.00011  Score=59.63  Aligned_cols=43  Identities=21%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH  161 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~  161 (270)
                      +++.++.++||+|+||||.+--|+-.+.+              ......++..|.|.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~--------------~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKG--------------KGRRPLLVAADTQR   50 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHH--------------TTCCEEEEECCSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCcEEEEeccccc
Confidence            34678999999999999998888777641              33445568888874

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=4.3e-05  Score=62.31  Aligned_cols=47  Identities=17%  Similarity=0.303  Sum_probs=35.1

Q ss_pred             ceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH  161 (270)
Q Consensus       101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~  161 (270)
                      +++-+...+++++||+|+||||.+--|+-.+.+              ......++..|.|.
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~--------------~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--------------QGKSVMLAAGDTFR   49 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHT--------------TTCCEEEECCCTTC
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCcEEEEeccccc
Confidence            344456789999999999999998777777641              33456668888874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=4.4e-05  Score=62.34  Aligned_cols=48  Identities=17%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             cceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH  161 (270)
Q Consensus       100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~  161 (270)
                      +++.-.++.+++++||+|+||||.+--|+-.+.+              ......++..|.|.
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~--------------~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--------------EGKSVVLAAADTFR   51 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--------------TTCCEEEEEECTTC
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCceEEEeecccc
Confidence            4555678899999999999999988666665531              34456668988873

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2e-05  Score=63.94  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.++.|+||||||||||.+.|....
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999998875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.55  E-value=4.3e-05  Score=62.23  Aligned_cols=23  Identities=43%  Similarity=0.666  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+|+|+.|||||||++.|...+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            78999999999999999998876

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.7e-05  Score=61.99  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++..++.|+||+||||||+++.|+..++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999999873

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.47  E-value=4e-05  Score=60.65  Aligned_cols=27  Identities=37%  Similarity=0.534  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++|-.+.|+||+||||||+++.|+..+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            467788899999999999999999877

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.45  E-value=2.7e-05  Score=62.03  Aligned_cols=28  Identities=29%  Similarity=0.578  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.++.+|.|+||+||||||+++.|+..+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999999999987

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.40  E-value=4.3e-05  Score=59.18  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.|+|++||||||+.+.|+..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999999984

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.8e-05  Score=61.06  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=22.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|+|.||+||||||+++.|+.-++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999999883

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.39  E-value=4.7e-05  Score=59.28  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++.|.|++||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999984

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.38  E-value=9e-05  Score=60.32  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH  161 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~  161 (270)
                      +.+.++.++||+|+||||.+--|+-.+.+              .+.+..++..|.|.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~--------------~g~kV~lit~Dt~R   52 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK--------------KGFKVGLVGADVYR   52 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH--------------TTCCEEEEECCCSS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCceEEEEeeccc
Confidence            56799999999999999998777776641              34456668888874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.37  E-value=5.1e-05  Score=61.21  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+|+|.||+||||||.++.|+.-++
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999884

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.5e-05  Score=59.87  Aligned_cols=24  Identities=42%  Similarity=0.624  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -+|.|+||+||||||.++.|+.-+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999987

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.35  E-value=5.4e-05  Score=62.61  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.9

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.+..|.|.||+|||||||++.|++.+
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35567789999999999999999999987

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5.1e-05  Score=59.66  Aligned_cols=29  Identities=34%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-+.+++|.++|++||||||+++.++...
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            34678999999999999999998875543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=6.7e-05  Score=59.63  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +-+|.++|.+||||||+++.|+..++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999998874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.33  E-value=5.9e-05  Score=58.70  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      |.|+|++||||||+.+.|+..+.
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999883

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=5.8e-05  Score=59.69  Aligned_cols=39  Identities=15%  Similarity=0.136  Sum_probs=31.2

Q ss_pred             cCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ....++|+|.+.++-.     .+...++..|||+++.++++.|.
T Consensus        99 ~~~~~vi~e~~~~~~~-----~~~~~~d~vI~v~a~~e~r~~Rl  137 (191)
T d1uf9a_          99 LEAPLVFLEIPLLFEK-----GWEGRLHGTLLVAAPLEERVRRV  137 (191)
T ss_dssp             CCCSEEEEECTTTTTT-----TCGGGSSEEEEECCCHHHHHHHH
T ss_pred             cccceEEEEeeccccc-----cccccceeEEEEecchhhHHHHH
Confidence            4567889998876654     56777899999999999988774

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=6.9e-05  Score=57.98  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +.|+|++||||||+.+.|+..++
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44679999999999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=6e-05  Score=59.74  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.|+||||||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=7.7e-05  Score=58.14  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .|.|+||+||||||+++.|+..++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367999999999999999999883

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.28  E-value=5.5e-05  Score=59.79  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+|.|+||+||||||+++.|+.-++
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3578999999999999999999883

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=6.1e-05  Score=63.76  Aligned_cols=54  Identities=11%  Similarity=-0.002  Sum_probs=37.6

Q ss_pred             CCCcccCChhhhhhh----hccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEeccc
Q 024225          208 SFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYATSFK  261 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~----l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~~~~  261 (270)
                      .++.|++....+...    ....+.++++|||=..|++...+++.+++.     .+++|+++.
T Consensus       219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHs  281 (308)
T d1e69a_         219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN  281 (308)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred             hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECC
Confidence            557777776554432    333667999999999999988888888876     235555554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=8.7e-05  Score=58.62  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..+.|+||||+|||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999988764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.23  E-value=5.1e-05  Score=60.13  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.++-+|+|-|+.||||||+++.|...+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467799999999999999999998876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=8.8e-05  Score=59.02  Aligned_cols=22  Identities=50%  Similarity=0.735  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.|+||||||||||++.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.22  E-value=9.7e-05  Score=57.95  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .|.|+||+||||||+++.|+.-++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            477999999999999999999883

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=5.9e-05  Score=62.02  Aligned_cols=26  Identities=31%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|+..+++|+||+|||||++.|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            58999999999999999999998765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=6.5e-05  Score=59.54  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999974

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00021  Score=61.85  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .-.+.-+|||.||+|||||||+..|...+.
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            345688999999999999999999988773

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00014  Score=56.93  Aligned_cols=24  Identities=46%  Similarity=0.739  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.|+||+||||||+++.|+.-++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999873

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00013  Score=64.01  Aligned_cols=45  Identities=11%  Similarity=0.024  Sum_probs=34.5

Q ss_pred             CCCcccCChhhhhhhh----ccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225          208 SFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (270)
Q Consensus       208 ~~S~g~~~rv~~~~~l----~~~~~ilIld~~~~~lDe~~~~~l~~~~~  252 (270)
                      .+|+|++..++++..+    ..+..++++||+...||+..+..+.++++
T Consensus       332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~  380 (427)
T d1w1wa_         332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR  380 (427)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            4489998877665332    23667999999999999988888877774

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.12  E-value=0.00017  Score=58.40  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.-++|.+|-|.|.+||||||+++.|...+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            445789999999999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00011  Score=56.04  Aligned_cols=24  Identities=42%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |-.|+|+|+.|+|||||++.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            567999999999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=56.74  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999887

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00016  Score=56.53  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=22.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ..+-.|||+|..|+|||||++.|.|.
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34567999999999999999999874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=54.48  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|.|+|++|||||||++.|.+--
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00019  Score=58.08  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++|.+|+|-|+.||||||+++.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00017  Score=56.69  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|+++-|.||+|||||||+-.++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998887664

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.03  E-value=0.00019  Score=57.01  Aligned_cols=25  Identities=24%  Similarity=0.574  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.+.|+||+||||||+++.|+.-+
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999987

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00019  Score=53.97  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .++|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999998874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00015  Score=56.16  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|+|+.|+|||||++.|.|.-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00021  Score=57.32  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|.+|+|-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00022  Score=55.77  Aligned_cols=24  Identities=46%  Similarity=0.725  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .|.|+||.||||||+++.|+..++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            356889999999999999999883

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.0002  Score=56.82  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|||||||++.|.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999885

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.99  E-value=0.00021  Score=54.15  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|.+|||||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00018  Score=56.08  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +|+|+|.+|+|||||++.|.|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00018  Score=55.67  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +|+|+|.+|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.95  E-value=0.00043  Score=59.74  Aligned_cols=29  Identities=31%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.+.-+|||.||.|||||||+..|...+
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999998765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.93  E-value=0.00014  Score=56.55  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -|+|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=8.6e-05  Score=58.21  Aligned_cols=21  Identities=52%  Similarity=0.684  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q 024225          110 VGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |||+|++++|||||++.|.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00028  Score=56.72  Aligned_cols=38  Identities=13%  Similarity=0.009  Sum_probs=29.2

Q ss_pred             CCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE  268 (270)
Q Consensus       226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~  268 (270)
                      ..++++++.|.++--     .....++..|||+++.++|+.|.
T Consensus       105 ~~~~~~~e~~ll~e~-----~~~~~~~~iI~V~a~~e~r~~R~  142 (208)
T d1vhta_         105 TSPYVLWVVPLLVEN-----SLYKKANRVLVVDVSPETQLKRT  142 (208)
T ss_dssp             CSSEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHH
T ss_pred             hcCCcceeeeecccc-----cccccCCEEEEEeCCHHHHHHHH
Confidence            456788888766643     45667788899999999998884

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.86  E-value=0.00016  Score=55.75  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=20.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +.-.|+|+|++|||||||++.|.+-
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456889999999999999998663

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00014  Score=59.09  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.+|+|-|+-||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999999999887

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.004  Score=51.19  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -+|+++.|.|++|+|||||+-.|+..+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            359999999999999999998887765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.82  E-value=7.1e-05  Score=61.74  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|....++|+||+|||||++.|.+-.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            57888999999999999999998865

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00041  Score=56.08  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|.+|+|-|+-||||||+++.|...+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            69999999999999999999999888

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.00015  Score=56.54  Aligned_cols=21  Identities=57%  Similarity=0.831  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q 024225          110 VGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |||+|.+++|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.75  E-value=0.00041  Score=56.20  Aligned_cols=23  Identities=43%  Similarity=0.749  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+-|.||+|+||||++++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            36799999999999999999876

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00047  Score=56.33  Aligned_cols=25  Identities=40%  Similarity=0.562  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...+.|.||+|+||||++++|+..+
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999987

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.00046  Score=56.20  Aligned_cols=24  Identities=42%  Similarity=0.681  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+-+.||+|+||||++++|++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            366999999999999999999883

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.00046  Score=56.09  Aligned_cols=24  Identities=50%  Similarity=0.750  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+-+.||+|+||||++++|+..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            367999999999999999999984

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.00048  Score=58.90  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.-+.+.||+|+|||.|+|.|+..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            345667899999999999999999984

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.65  E-value=0.00037  Score=53.29  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|+.|||||||++.|.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5889999999999999998764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.00068  Score=52.39  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..++|.+|.|-|+=|||||||.|.++.-+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            357899999999999999999999998883

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.64  E-value=0.00059  Score=54.08  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +|+|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999873

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00056  Score=54.38  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -|+|+|+.|+|||||++.|.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.60  E-value=0.00055  Score=52.62  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ++.-.|.|+|.+|||||||++.|.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34467899999999999999998774

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00059  Score=55.09  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=20.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.|.||+|+||||++++|+..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6799999999999999999986

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.53  E-value=0.00075  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988663

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00078  Score=55.40  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=25.7

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|++++ +.+.++.|.|||++||||++|.++-..
T Consensus        33 Ndi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          33 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeEEEC-CCceEEEEeccCchhhHHHHHHHHHHH
Confidence            455554 235789999999999999999986553

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00053  Score=55.17  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      +++|.++-|.||+|||||||+-.++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999876653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00029  Score=54.39  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      ..-.|+|+|++++|||||++.|.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3566999999999999999999764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00097  Score=53.93  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=24.7

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +++|.++.|.||+|||||||+-.++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999999877754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.00018  Score=54.65  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|+|+|.+|+|||||++.|.|.-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00097  Score=51.30  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999998876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.40  E-value=0.00099  Score=51.20  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+++|++|+|||||++.+.+-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4899999999999999988764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.40  E-value=0.001  Score=54.90  Aligned_cols=27  Identities=41%  Similarity=0.553  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +..-|.|.||+|||||++++.|+..++
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            445688999999999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0012  Score=55.00  Aligned_cols=29  Identities=31%  Similarity=0.525  Sum_probs=24.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +..+.-+.|.||+|+|||++++.|+..++
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            33446678999999999999999999884

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.39  E-value=0.0011  Score=54.06  Aligned_cols=25  Identities=32%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++++.|.|||.+||||++|.++-..
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHHHH
Confidence            3588999999999999999876553

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00094  Score=51.11  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988763

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.001  Score=53.53  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +-|.||+|+||||++++|+..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            5689999999999999999887

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.35  E-value=0.0011  Score=54.03  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+.++.|.||.|+|||||++.++..+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999988776

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.35  E-value=0.00074  Score=52.66  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q 024225          110 VGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |||+|...||||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            999999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.35  E-value=0.0013  Score=53.52  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ....+.|.||.|+||||+++.|+..+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            345788999999999999999999984

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0011  Score=51.16  Aligned_cols=21  Identities=43%  Similarity=0.569  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|++|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998866

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.32  E-value=0.0018  Score=56.50  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .++++..+.+.||+|+||||+++.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            468889999999999999999999999994

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.0012  Score=50.44  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|++|+|||||++.+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.29  E-value=0.001  Score=53.91  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +++|.++.|.||+|||||||+--++-.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999999998655443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.26  E-value=0.00085  Score=57.82  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..+.-+.|.|+.|||||||++.|++.+
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhc
Confidence            4556678999999999999999999988

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.23  E-value=0.0012  Score=52.99  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|+++-|.|++|+|||||+--++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997777654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.22  E-value=0.0011  Score=52.82  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=22.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~  128 (270)
                      +++|+++-|.|++|+|||||+--++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999985443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.21  E-value=0.0012  Score=53.51  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++|.++.|.|++|||||||+..++-..
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999997766654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.20  E-value=0.0015  Score=53.07  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .+|||.|+-||||||+++.|...+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            489999999999999999997654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=50.15  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~g  129 (270)
                      -.|.|+|.+|+|||||++.+.+
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.19  E-value=0.00095  Score=55.45  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.|+|+|.+|+|||||++.|.|.-
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468999999999999999999863

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0016  Score=50.22  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|++|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999987653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.17  E-value=0.0015  Score=53.08  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +|||+|...||||||++.|.+.-
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            39999999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=50.07  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~g  129 (270)
                      ..|+|+|+.|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0017  Score=49.62  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|.|+|..|+|||||++.+.+-
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0015  Score=49.85  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.++|.+|+|||||++.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998776

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.0018  Score=54.00  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +..+.-+-|.||+|+|||+|++.|++.++
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            44556688999999999999999999873

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0017  Score=50.54  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|+.|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999988764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.0021  Score=53.11  Aligned_cols=26  Identities=42%  Similarity=0.594  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..-+.|.||+|+|||+|++.|+..++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC
Confidence            34578999999999999999999873

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0018  Score=49.42  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|.+|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=49.97  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|.+|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999987765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.0019  Score=50.21  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0018  Score=52.03  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +-|.||+|+||||++++|+..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            5699999999999999999986

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.04  E-value=0.0012  Score=53.99  Aligned_cols=24  Identities=46%  Similarity=0.653  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456779999999999999999873

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=49.75  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|..|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.002  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|.+|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999887753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=49.23  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0025  Score=49.68  Aligned_cols=31  Identities=29%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G  139 (270)
                      -.|.|+|.+|+|||||++.+. ......|+.|
T Consensus         3 iKivllG~~~vGKTsll~r~~-f~~~~~pTiG   33 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR-IIHGQDPTKG   33 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence            358899999999999999994 4444445555

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0015  Score=53.00  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.|.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999999876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.02  E-value=0.0016  Score=53.88  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=27.3

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |+++..=+.+|+++.|.|++|+|||||+.-|+-.
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            3444333789999999999999999999877754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0021  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|..|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.01  E-value=0.0017  Score=49.89  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      +.-.|+|+|+.|+|||||++.+.+
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhc
Confidence            345689999999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0021  Score=49.06  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|.+|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0026  Score=52.64  Aligned_cols=25  Identities=36%  Similarity=0.577  Sum_probs=22.1

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..-+-|.||+|+|||++++.++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            3447899999999999999999986

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0019  Score=49.52  Aligned_cols=22  Identities=45%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            4789999999999999988764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.95  E-value=0.0022  Score=53.65  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL  162 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~  162 (270)
                      ++.|.++-|.||+|+|||||+-.++....               .. .+.++++|...-
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q---------------~~-g~~~vyIDtE~~   99 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQ---------------AA-GGVAAFIDAEHA   99 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHH---------------HT-TCEEEEEESSCC
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHh---------------cC-CCEEEEEECCcc
Confidence            78999999999999999999866666552               11 245688888753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0023  Score=49.14  Aligned_cols=21  Identities=43%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|++|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0024  Score=49.30  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.++|..|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0023  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|..|+|||||++.+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0025  Score=51.46  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+|+|=|+-||||||+++.|...+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4789999999999999999999987

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0023  Score=50.25  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|+.|+|||||++.+.+
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            488999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0024  Score=49.24  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|.+|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0027  Score=48.47  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|+|+|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.83  E-value=0.0029  Score=49.61  Aligned_cols=31  Identities=29%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             ccccceecCCCeEEEEECCCCCCHHHHHHHHH
Q 024225           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (270)
Q Consensus        97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~  128 (270)
                      ++..-+.+ .|.=|.|.|+||+||||++-.|.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34445555 68889999999999999986654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0028  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|+.|+|||||++.+..-
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0026  Score=48.94  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|..|+|||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999988765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.003  Score=48.26  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|..|+|||||++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999888753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.76  E-value=0.0019  Score=50.04  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      -++--.|.|+|++|+|||||++.+.+
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhc
Confidence            34456788999999999999988743

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0027  Score=53.68  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             cccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -|.=+.|.+|+.++|.|++|+|||||+..|+...
T Consensus        34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3555779999999999999999999999999865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.002  Score=57.01  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .--|+|+|.+|+|||||++.|.|.-
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3458999999999999999999853

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.69  E-value=0.0021  Score=53.80  Aligned_cols=44  Identities=27%  Similarity=0.386  Sum_probs=34.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCcc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY  163 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~  163 (270)
                      ++.|.++-|.||+|||||||+-.++....               .+. +.++++|...-.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aq---------------k~g-~~v~yiDtE~~~   97 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQ---------------KAG-GTCAFIDAEHAL   97 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH---------------HTT-CCEEEEESSCCC
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHH---------------hCC-CEEEEEECCccC
Confidence            67899999999999999999988888763               222 445888877533

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0035  Score=47.99  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~g  129 (270)
                      -.|.++|..|+|||||++.+.+
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3578999999999999998876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.003  Score=48.97  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~g  129 (270)
                      -.|.|+|.+|+|||||++.+..
T Consensus         6 iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999988765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0027  Score=48.88  Aligned_cols=22  Identities=45%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|..|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0035  Score=47.87  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0043  Score=51.66  Aligned_cols=29  Identities=31%  Similarity=0.558  Sum_probs=25.5

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++.|.++-|.||+|||||||+-.++....
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            67899999999999999999977777663

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.64  E-value=0.0043  Score=48.55  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.=|.|.|+||+||||++-.|..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            478899999999999999866554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.0035  Score=56.15  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .=|.++||+|||||-|+|.|++.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhC
Confidence            3688999999999999999999984

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0043  Score=47.24  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .|.|+|.+|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999987653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.50  E-value=0.0044  Score=47.39  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999998765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0053  Score=52.35  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .-.+.++||+|+|||.|++.|+..+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            44788999999999999999999983

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.48  E-value=0.0029  Score=48.50  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~g  129 (270)
                      -.|.|+|++|+|||||++.+..
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.0024  Score=49.13  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=9.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|..|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0043  Score=48.25  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.005  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -.|+++|..|+|||||++.+.+-
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999977664

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.40  E-value=0.0064  Score=53.56  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.-+|.|.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4578899999999999999999999874

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.36  E-value=0.0046  Score=49.71  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G  139 (270)
                      -.|.|+|.+|+|||||++.+..--  ..|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~--~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH--VVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH--CCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC--cCCCCC
Confidence            467899999999999999885432  235555

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0024  Score=49.04  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|++|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.005  Score=48.03  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|+|+|..|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0052  Score=47.58  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.|+|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987655

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.21  E-value=0.0064  Score=50.69  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...+|+|.|.-|.|||||++.+....
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            35799999999999999999987653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.18  E-value=0.0027  Score=54.26  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .=+-|.||.|+|||||+|.+++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            347899999999999999999998

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.09  E-value=0.0074  Score=46.83  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .|.=|.|.|+||+||||++-.|..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            578899999999999999855544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.98  E-value=0.0096  Score=45.74  Aligned_cols=23  Identities=26%  Similarity=0.224  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|.|+|..|+|||||++.+..--
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            57899999999999999876543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0044  Score=51.97  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      --+|+|+||-++|||||++.|.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3689999999999999999998854

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.84  E-value=0.0066  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998865

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0094  Score=47.41  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +..+.|.||+|+||||+++.++..+
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhc
Confidence            3458899999999999999999987

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.74  E-value=0.0092  Score=47.44  Aligned_cols=23  Identities=35%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -|||+|..++|||||+..|....
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHh
Confidence            38999999999999999997654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0096  Score=48.00  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -++.|.|.=|||||||++.|...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            36789999999999999888664

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.69  E-value=0.0097  Score=50.00  Aligned_cols=24  Identities=29%  Similarity=0.526  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +-.+||+|-+.||||||++.|.+.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            345999999999999999999985

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.0094  Score=45.99  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .|.|+|..|+|||||++.+..-.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999987654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.011  Score=47.88  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ..+-|.||+|+||||++++++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            4567899999999999999999873

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.54  E-value=0.0068  Score=51.30  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -|||+|-+.+|||||++.|.|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999885

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.46  E-value=0.016  Score=48.35  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=28.5

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.-+.+.+|+.++|.|++|+|||||+..++...
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999999988887664

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.44  E-value=0.01  Score=49.34  Aligned_cols=23  Identities=35%  Similarity=0.627  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -|+|+|+.|+|||||+..|...-
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Confidence            48999999999999999996543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.35  E-value=0.013  Score=49.87  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.4

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .-.+.++||+|+|||.+++.|+..+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHh
Confidence            3467899999999999999999987

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.28  E-value=0.012  Score=48.80  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|||+|-+.+|||||++.|.+.-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999763

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.04  E-value=0.011  Score=49.63  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .++++|.-+||||||++.|.|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            3689999999999999999995

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.01  E-value=0.013  Score=48.96  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      .-|||+|+.|||||||+..|.-.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45899999999999999988543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.021  Score=45.14  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=24.5

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -+...-+.|+||+|.|||+++..|+..+.
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            34455688999999999999999999873

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.94  E-value=0.018  Score=49.13  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -++.+.||+|+|||.|++.|++.+
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHh
Confidence            345568999999999999999997

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.91  E-value=0.011  Score=49.32  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +..++ ++++|.-+||||||++.|.|.
T Consensus        24 ~~~P~-ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          24 LDLPQ-IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCE-EEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCe-EEEEcCCCCCHHHHHHHHhCC
Confidence            33444 668999999999999999995

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.82  E-value=0.02  Score=45.18  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -|||+|.-.+|||||++.|.+.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            38999999999999999998876

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.023  Score=47.20  Aligned_cols=29  Identities=31%  Similarity=0.370  Sum_probs=24.3

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -....-+.|+||+|+|||++++.|+..+.
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            34455678999999999999999999873

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.68  E-value=0.019  Score=49.74  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +-++||+|+|||-|+|.|+.++
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            6677999999999999999987

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=0.031  Score=40.68  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=25.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ++|..|-+.|-+||||||+++.|.-.+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999977663

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.23  E-value=0.027  Score=44.29  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      --|||+|.-.+|||||+..|.+..
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhh
Confidence            459999999999999999998755

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.88  E-value=0.028  Score=44.78  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      +-|.||+|+|||-|++.++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999998774

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.78  E-value=0.021  Score=48.90  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|.|-|+-||||||+++.|...+
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            458999999999999999998766

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.77  E-value=0.031  Score=47.80  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -.|.|-|+-|+||||+++.|+..+.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            4688999999999999999999873

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.034  Score=48.48  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -+.|+|++|||||++++.|.-.
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            3789999999999999755443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.42  E-value=0.053  Score=42.97  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=26.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +++.-.+.|.||.++|||+++..|+.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            6888999999999999999999999998

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.40  E-value=0.023  Score=47.36  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=27.9

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      |.-+.+.+|+.++|.|++|+|||+|+..+....
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            455789999999999999999999998765543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.99  E-value=0.042  Score=45.12  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHH-HHHHHHHh
Q 024225          110 VGLAGPPGAGKSTL-AAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTL-lk~L~gll  131 (270)
                      +.|.|+.||||||+ +..+..++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHH
Confidence            57889999999975 46666655

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.98  E-value=0.028  Score=48.10  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -.|.|=|+=||||||+++.|...+
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999987

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.92  E-value=0.04  Score=44.04  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~g  129 (270)
                      -||++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            389999999999999988854

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.85  E-value=0.03  Score=46.86  Aligned_cols=32  Identities=13%  Similarity=0.157  Sum_probs=27.0

Q ss_pred             ccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus        99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |.-+.+-+|+.++|.|++|+|||||+..+...
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            45578999999999999999999998766544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.46  E-value=0.054  Score=44.92  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHH-HHHHHHh
Q 024225          110 VGLAGPPGAGKSTLA-AEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLl-k~L~gll  131 (270)
                      +.|.|+.||||||.+ ..++.++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            668899999999755 5555555

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.45  E-value=0.069  Score=49.98  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -.+.+.|.|.|+||||||+-.|.|...+-
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999988763

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=0.069  Score=45.97  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=19.5

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~g  129 (270)
                      .+.++.|.||.|+||||++..+..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHH
Confidence            367999999999999998855443

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.31  E-value=0.073  Score=50.05  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.+.|.|.|+||||||+-.|.|+..+-
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5679999999999999999999998774

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.06  E-value=0.072  Score=42.64  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHh
Q 024225          110 VGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++++|.-.+|||||+..|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6999999999999999997665

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.01  E-value=0.081  Score=49.72  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ++.+.|.|.|+||||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467999999999999999999998887

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.91  E-value=0.085  Score=41.38  Aligned_cols=27  Identities=7%  Similarity=-0.006  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+--+.+.||+|+||||+++.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            467888999999999999999999874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.88  E-value=0.09  Score=43.32  Aligned_cols=28  Identities=21%  Similarity=0.484  Sum_probs=25.6

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      .++.-.+.|.||.++|||||++.|..++
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4667788999999999999999999998

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.68  E-value=0.029  Score=40.22  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=21.0

Q ss_pred             cCCCeEEEEECCCCCCHHHHH-HHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKSTLA-AEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLl-k~L~gll  131 (270)
                      +++|+.+.|.+|.|||||+.+ ..+....
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            567999999999999999654 3443333

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.65  E-value=0.048  Score=46.78  Aligned_cols=29  Identities=21%  Similarity=0.402  Sum_probs=23.6

Q ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       102 l~i~~geivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      +++..+.+.+|+|||||||||++..|.=.
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~~~   48 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAISFV   48 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34455668999999999999999999643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.45  E-value=0.061  Score=46.85  Aligned_cols=27  Identities=33%  Similarity=0.575  Sum_probs=22.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ...--+.|+|++|+|||+++.-|+..+
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            334446899999999999999888876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.35  E-value=0.071  Score=43.19  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      -|+|+|..++|||||+..|.-..
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~   30 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKC   30 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHc
Confidence            47999999999999998886543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.30  E-value=0.093  Score=49.92  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=25.7

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      -.+.+.|.|.|+||||||+-.|.|...+-
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999998874

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.97  E-value=0.097  Score=49.74  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+.+.|.|.|+||||||.-.|.|...+-
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4579999999999999999999999874

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.89  E-value=0.082  Score=44.59  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             CCCeEEEEECCCCCCHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLA  124 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLl  124 (270)
                      +.|++-.+.|.||+|||||.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            45888999999999999975

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.64  E-value=0.12  Score=48.55  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=26.1

Q ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 024225          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINK  133 (270)
Q Consensus       104 i~~geivgL~GpnGsGKSTLlk~L~gll~~  133 (270)
                      -.+.+.|.|.|+||||||+-.|.|...+..
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l~~  120 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYFAT  120 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            356789999999999999999999998743

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.50  E-value=0.1  Score=42.84  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      +.+-.++|+|-+-+|||||++.|.|.-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            356679999999999999999999853

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.37  E-value=0.097  Score=42.49  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~L~gll  131 (270)
                      ..=|.|.|+.|+||+++++.|-..-
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhc
Confidence            3457899999999999999998653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.21  E-value=0.076  Score=45.44  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q 024225          109 IVGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       109 ivgL~GpnGsGKSTLlk~L~gl  130 (270)
                      -|||+|.-|+|||||+..|.-.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3999999999999999998644

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=0.091  Score=44.41  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             CCeEEEEECCCCCCHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLA  124 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLl  124 (270)
                      .|++-.+.|.||+|||||.
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4889999999999999973

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.87  E-value=0.077  Score=43.09  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q 024225          110 VGLAGPPGAGKSTLAAEVVRR  130 (270)
Q Consensus       110 vgL~GpnGsGKSTLlk~L~gl  130 (270)
                      |+|+|.-++|||||+..|.-.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~   47 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFL   47 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHH
Confidence            899999999999999988543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.36  E-value=0.12  Score=43.65  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.4

Q ss_pred             CCeEEEEECCCCCCHHHHH
Q 024225          106 VKHIVGLAGPPGAGKSTLA  124 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLl  124 (270)
                      .|++-.+.|-||+|||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            5788899999999999996

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.22  E-value=0.12  Score=42.28  Aligned_cols=28  Identities=36%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             cCCCeEEEEECCCCCCHHH--HHHHHHHHh
Q 024225          104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI  131 (270)
Q Consensus       104 i~~geivgL~GpnGsGKST--Llk~L~gll  131 (270)
                      +.+|+.+.|.+|.|||||+  +..++...+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999997  335555555

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.66  E-value=0.38  Score=37.42  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=22.7

Q ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHhc
Q 024225          107 KHIVGLA-GPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       107 geivgL~-GpnGsGKSTLlk~L~gll~  132 (270)
                      |++|++. +.-|+||||+.--|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            6788888 6789999999999999884

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.20  E-value=0.14  Score=36.85  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=16.0

Q ss_pred             CeEEEEECCCCCCHHHHHHH
Q 024225          107 KHIVGLAGPPGAGKSTLAAE  126 (270)
Q Consensus       107 geivgL~GpnGsGKSTLlk~  126 (270)
                      -....|.+|.|||||+++-.
T Consensus         8 ~~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHH
Confidence            45667899999999998643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.14  E-value=0.46  Score=38.32  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ...++.+.|.-|.||||+.-.|+..+.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA   33 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLA   33 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHH
Confidence            457888999999999999999999884

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.16  E-value=0.33  Score=35.70  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCCCHHH-HHHHHHHHh
Q 024225          107 KHIVGLAGPPGAGKST-LAAEVVRRI  131 (270)
Q Consensus       107 geivgL~GpnGsGKST-Llk~L~gll  131 (270)
                      |.+-.|+||=.||||| |++.+-...
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6788899999999999 777776654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.80  E-value=0.5  Score=37.89  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      .+|+|.|.=|+||||+.-.|+..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH
Confidence            4688999999999999999998883

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.49  E-value=0.34  Score=37.07  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             eEEEEECCC-CCCHHHHHHHHHHHhc
Q 024225          108 HIVGLAGPP-GAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~Gpn-GsGKSTLlk~L~gll~  132 (270)
                      +.+-|.|-+ |+||||+.-.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            467789997 9999999999999984

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.83  E-value=0.72  Score=35.64  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.2

Q ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHhc
Q 024225          108 HIVGLA-GPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       108 eivgL~-GpnGsGKSTLlk~L~gll~  132 (270)
                      ++|++. |.-|+||||+.-.|+..+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la   27 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALA   27 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHH
Confidence            466776 8889999999999999884

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=0.47  Score=36.24  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       106 ~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      |+++|||.|-||  |||...+|.-+++
T Consensus         1 p~kvI~VTGTnG--KTTt~~mi~~iL~   25 (214)
T d1gg4a4           1 PARVVALTGSSG--KTSVKEMTAAILS   25 (214)
T ss_dssp             CCEEEEEECSSC--HHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHH
Confidence            467999999885  9999999999994

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=1.1  Score=35.83  Aligned_cols=28  Identities=36%  Similarity=0.568  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLlk~L~gll~  132 (270)
                      ....++.+.|.=|+||||+.=.|+..+.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4457788889999999999988888873

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.12  E-value=0.19  Score=38.77  Aligned_cols=20  Identities=40%  Similarity=0.333  Sum_probs=16.2

Q ss_pred             CCCeEEEEECCCCCCHHHHH
Q 024225          105 NVKHIVGLAGPPGAGKSTLA  124 (270)
Q Consensus       105 ~~geivgL~GpnGsGKSTLl  124 (270)
                      ..|.-+.|.+|.|||||+.+
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            34666789999999999864