Citrus Sinensis ID: 024243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQRPPLPPHLAAAY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
mllrssstpilnswiphakdsspvpftltassspcdslkSMTRtlsetdlrslplpkkkatsnvFNGLAleekedesetasfdggwlgkeACEIGVLVgggiyggggnmcgggggsdggdgdgrwgswdpnnhgnnstdLYYQKMiqadprnpllLSNYARFLKEARGDLLKAEEYCARAIlmspndgnvlsmyGDLIWQSHKDASRAESYFDQavkaapddcyVLASHAhflwdadedeedeqvgeepappsynfqqrpplpphlaaay
Flexible Loop (DISEMBL)
mllrssstpilnswiphakdsspVPFTLtassspcdsLKSMTRTLsetdlrslplpkkkatsnVFNGlaleekedesetASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAppsynfqqrpplpPHLAAAY
Low Complexity Region (SEG)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVgggiyggggnmcgggggsdggdgdgrwgSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWdadedeedeqvgeePAPPSYNFQQRPPLPPHLAAAY
Disordered region (IsUnstruct)
*********************************************************************************FDGGWLGKEACEIGVLVGGGIYGG*********************************DLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD***********************************
Disordered Region (DISOPRED)
MLLRSSSTP*****************************************************************************LGKEACEIGVLVG**I***GGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY***************Y
Disordered Region (DISEMBL)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALE**********FDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD**************PSYNFQQRPPLPPHLAAAY
Disordered Region (DISPRO)
*********IL************************************************************************G*WLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE*PAPPSYNFQQRPP***H*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQRPPLPPHLAAAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
118486453	304	unknown [Populus trichocarpa]	0.981	0.871	0.529	4e-64
224090403	304	predicted protein [Populus trichocarpa]	0.988	0.878	0.516	2e-61
225445531	288	PREDICTED: uncharacterized protein LOC10	0.825	0.774	0.548	3e-55
449523397	297	PREDICTED: uncharacterized protein LOC10	0.992	0.902	0.501	1e-53
449464638	293	PREDICTED: uncharacterized protein LOC10	0.870	0.802	0.521	2e-53
357478127	292	hypothetical protein MTR_4g114690 [Medic	0.837	0.773	0.5	3e-53
224144206	307	predicted protein [Populus trichocarpa]	0.992	0.872	0.480	3e-53
388492190	292	unknown [Medicago truncatula]	0.837	0.773	0.5	3e-53
217073634	292	unknown [Medicago truncatula]	0.837	0.773	0.503	4e-53
356548565	257	PREDICTED: uncharacterized protein LOC10	0.874	0.918	0.535	1e-51

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 163/308 (52%), Positives = 198/308 (64%), Gaps = 43/308 (13%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSP-----------VPFTLTASSSPC---------DSLK 39
           MLLRSSSTP LNSWIP H+K+ SP            P +LTASSS           DS+K
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSPEPESVHQIQKTRPISLTASSSSPFSSISSQDHDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIG---- 95
            MTR  SE DLR L +PK+K ++ + NG+ ++E+ +E    SF  G L  E CE G    
Sbjct: 61  RMTRAFSEADLRDLSVPKRKPSNGILNGIPVDEEVEEK--VSFWEGGLFFEGCEAGEKGE 118

Query: 96  -------VLVGGGIYGGGG-NMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQ 147
                  VLV GG   GGG   CGG G SD GD DG  GS + +N G  +TD YYQ MI+
Sbjct: 119 GDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFGD-DGGSGSRE-SNEGIETTDAYYQTMIE 176

Query: 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207
           A+P NPL L NYARFLKE R D +KAEEYC RAIL +PND +VLSMY DLIWQSHKDASR
Sbjct: 177 ANPGNPLFLRNYARFLKEVRLDFVKAEEYCGRAILANPNDADVLSMYADLIWQSHKDASR 236

Query: 208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG------EEPAPPSYNFQQRPP 261
           AESYF +AVKAAPDDCYV+AS+A FLWDA+E+E +E          + +PP++    +PP
Sbjct: 237 AESYFLRAVKAAPDDCYVMASYARFLWDAEEEEGEEGEREQNENMSKMSPPTFFHGSKPP 296

Query: 262 LPPHLAAA 269
           LPP  A++
Sbjct: 297 LPPLAASS 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090403|ref|XP_002308981.1| predicted protein [Populus trichocarpa] gi|222854957|gb|EEE92504.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 158/306 (51%), Positives = 194/306 (63%), Gaps = 39/306 (12%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSPVPFTL--------------------TASSSPCDSLK 39
           MLLRSSSTPILN+WIP H+K+ SP P +L                    + SS   DS+K
Sbjct: 1   MLLRSSSTPILNTWIPPHSKEPSPEPESLHQIQKSRSISLTASSSSSFSSISSQDNDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETAS---FDGGWLGKEACEIGV 96
            MTR  SETDLR L +PK+K ++ + NG++++E+ +E         + GW   E CE+GV
Sbjct: 61  RMTRAFSETDLRDLSVPKRKPSNRILNGISVDEEVEEEVEKKVSFLESGWFF-EGCEVGV 119

Query: 97  LVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDP----------NNHGNNSTDLYYQKMI 146
             G    G  G M  GGG   GG      G  D           +N G  STD+YYQKMI
Sbjct: 120 -KGQSDSGMLGVMVTGGGSEGGGGKFYGGGGSDFGDDGGSGFGESNKGIESTDVYYQKMI 178

Query: 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206
           +ADP NPLLLSNYA+FLKE R D +KAEEYC RAIL SPND +VLSMY DLIW S K AS
Sbjct: 179 EADPGNPLLLSNYAKFLKEVRADFVKAEEYCGRAILASPNDADVLSMYADLIWHSQKHAS 238

Query: 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG---EEPAPPSYNFQQRPPLP 263
           RAESYFDQAVKAAPDDCYV+AS+A FLWDA+E+EE+++ G    E  PP+++    PPLP
Sbjct: 239 RAESYFDQAVKAAPDDCYVMASYARFLWDAEEEEEEDEQGENISELLPPTFSHGSTPPLP 298

Query: 264 PHLAAA 269
           P  AA+
Sbjct: 299 PLAAAS 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 171/259 (66%), Gaps = 36/259 (13%)

Query: 1   MLLRSSSTPILNSWIPHAKDSSP----VPFTLTA---------SSSPCDSLKSMTRTLSE 47
           MLLRSSSTPILNSW P++K+SS     VP  L +          SS   S K M+R LSE
Sbjct: 1   MLLRSSSTPILNSWPPNSKESSSEPEMVPQILLSRSISLTTSSLSSVEGSSKKMSRALSE 60

Query: 48  TDLRSLPLPKKK---ATSNVFNGLALEEKEDE-----SETASFDGGWLG---KEACEIGV 96
           TDLR L LPK+K    T N  + L ++E+E+E     S TAS+ G W G      CE GV
Sbjct: 61  TDLRELSLPKRKPITKTVNRLSSLPVDEREEEDSCPISRTASYGGLWWGVGSDAGCE-GV 119

Query: 97  LVGGGIYGGGGNMCGGGGGSDG-GDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLL 155
            V GG  GGGG+  G   G  G GD          +N+GN + + YY+ MI+A+P N LL
Sbjct: 120 CVEGGSEGGGGSDGGYAHGKSGYGD----------SNNGNGNMESYYRTMIEANPGNALL 169

Query: 156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215
           L NYARFLKE RGD +KAEEYC RAIL +PNDGN+LS++ DLIWQ HKD+ RAESYFDQA
Sbjct: 170 LGNYARFLKEVRGDYIKAEEYCGRAILANPNDGNILSLFADLIWQVHKDSDRAESYFDQA 229

Query: 216 VKAAPDDCYVLASHAHFLW 234
           VKA+PDDC+VLAS+AHFLW
Sbjct: 230 VKASPDDCFVLASYAHFLW 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523397|ref|XP_004168710.1| PREDICTED: uncharacterized protein LOC101231631 [Cucumis sativus]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/297 (50%), Positives = 187/297 (62%), Gaps = 29/297 (9%)

Query: 1   MLLRSSSTPILNSWIPHAKDSS---------PVPFTLTASSSPC-------DSLKSMTRT 44
           M+LRS+STP+LNSW+ H++DSS         P   ++  S SP        DS + +TRT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 45  LSETDLRSLPLPKKKATSNVFNGLALEEKEDE------SETASFDGGWLGKEACEIGVLV 98
           LSETDL+ L + K K  S   +G +   +E        S+TAS   G +  E  E G  V
Sbjct: 61  LSETDLKDLSMAKMKPFSRTLSGFSEMAEETHGVGFSCSKTASLSCGSIS-ETGEDGGFV 119

Query: 99  GGGIYGGGGNMCGGGGGSDGGDGDGRWG-SWDPNNHGNNSTDLYYQKMIQADPRNPLLLS 157
              + GG G   G   G  G DG   W   +  +N GN STDLYYQKMI+A+P N +LLS
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGFGDSNRGNESTDLYYQKMIEANPGNSMLLS 179

Query: 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217
           NYARFLKE RGDL+KA+EYC RAIL +P DGNVLSMY DLIW++ KD+ RAESYF+QAVK
Sbjct: 180 NYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESYFNQAVK 239

Query: 218 AAPDDCYVLASHAHFLWDADEDEEDEQVGEEPA-----PPSYNFQQRPPLPPHLAAA 269
           AAP+DCYVLAS+A FLWDA+E+EE+E+  E         P+ +F Q    PP LAAA
Sbjct: 240 AAPEDCYVLASYARFLWDAEEEEEEEEEEEVGEENFREKPATSFFQGVQSPPPLAAA 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464638|ref|XP_004150036.1| PREDICTED: uncharacterized protein LOC101218093 [Cucumis sativus]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/259 (52%), Positives = 167/259 (64%), Gaps = 24/259 (9%)

Query: 1   MLLRSSSTPILNSWIPHAKDSS---------PVPFTLTASSSPC-------DSLKSMTRT 44
           M+LRS+STP+LNSW+ H++DSS         P   ++  S SP        DS + +TRT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 45  LSETDLRSLPLPKKKATSNVFNGLALEEKEDE------SETASFDGGWLGKEACEIGVLV 98
           LSETDL+ L + K K  S   +G +   +E        S+TAS   G +  E  E G  V
Sbjct: 61  LSETDLKDLSMAKMKPFSRTLSGFSEMAEETHGVGFSCSKTASLSCGSIS-ETGEDGGFV 119

Query: 99  GGGIYGGGGNMCGGGGGSDGGDGDGRWG-SWDPNNHGNNSTDLYYQKMIQADPRNPLLLS 157
              + GG G   G   G  G DG   W   +  +N GN STDLYYQKMI+A+P N +LLS
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGFGDSNRGNESTDLYYQKMIEANPGNSMLLS 179

Query: 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217
           NYARFLKE RGDL+KA+EYC RAIL +P DGNVLSMY DLIW++ KD+ RAESYF+QAVK
Sbjct: 180 NYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESYFNQAVK 239

Query: 218 AAPDDCYVLASHAHFLWDA 236
           AAP+DCYVLAS+A FLWDA
Sbjct: 240 AAPEDCYVLASYARFLWDA 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478127|ref|XP_003609349.1| hypothetical protein MTR_4g114690 [Medicago truncatula] gi|355510404|gb|AES91546.1| hypothetical protein MTR_4g114690 [Medicago truncatula]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/270 (50%), Positives = 162/270 (60%), Gaps = 44/270 (16%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDG----GWLGKEAC---- 92
           MTR LSETDL S  L +K      F     +E E+ES T +F             C    
Sbjct: 61  MTRALSETDLSS-QLNRKPLHRRQF-----DEDEEESRTGTFGARSRTASFSSALCSLTE 114

Query: 93  ------EIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMI 146
                 E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY+ MI
Sbjct: 115 FEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYYRTMI 170

Query: 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206
           +A+P NPL L NYA++LKE R D +KAEEYC RAIL +PNDGNVLS+Y DLIW+ HKDA 
Sbjct: 171 EANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAP 230

Query: 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDA 236
           RAE+YFDQAVKAAPDDCYVLAS+AHFLWDA
Sbjct: 231 RAETYFDQAVKAAPDDCYVLASYAHFLWDA 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144206|ref|XP_002325219.1| predicted protein [Populus trichocarpa] gi|222866653|gb|EEF03784.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/308 (48%), Positives = 190/308 (61%), Gaps = 40/308 (12%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSPVP-----FTLTASSSPC---------------DSLK 39
           MLLRSSSTPILNSWIP H+K+ SP P       +T S S                 DS +
Sbjct: 1   MLLRSSSTPILNSWIPPHSKEPSPEPESLHQIQITRSISLAASSSGPFSSISSQGHDSNE 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETAS---------FDGGWLGKE 90
            +    S+ DLR   +PK+K ++ + NG+ ++++ DE              F+G  +G++
Sbjct: 61  RVKIAFSKNDLRDFSVPKRKPSNKILNGITVDQEVDEEVEKKVSFWESGLLFEGFGVGEK 120

Query: 91  A----CEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGS-WDPNNHGNNSTDLYYQKM 145
                  +GVLV GG   GGG    GGGG  G D     GS +  +N G  +TD+YYQ M
Sbjct: 121 GEGDNGVLGVLVTGGGSDGGGRKFCGGGGGFGSDFGDDGGSRFRESNEGIETTDVYYQTM 180

Query: 146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205
           I+A+P NPL L NYARFLKE R D +KAEEYC RAIL +PND +VLSMY DLIWQ HK+A
Sbjct: 181 IEANPGNPLFLRNYARFLKEIRLDFVKAEEYCGRAILANPNDADVLSMYADLIWQGHKNA 240

Query: 206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEP----APPSYNFQQRPP 261
           SRAESYFD+AVKAAPDDCYV+AS+A FLWDA+E+EE E+   E     +PP++ F    P
Sbjct: 241 SRAESYFDRAVKAAPDDCYVMASYARFLWDAEEEEEGERDQRENMSKLSPPTF-FHGSRP 299

Query: 262 LPPHLAAA 269
           LPP  A++
Sbjct: 300 LPPLAASS 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492190|gb|AFK34161.1| unknown [Medicago truncatula]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/270 (50%), Positives = 162/270 (60%), Gaps = 44/270 (16%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDG----GWLGKEAC---- 92
           MTR LSETDL S  L +K      F     +E E+ES T +F             C    
Sbjct: 61  MTRALSETDLSS-QLNRKPLHRRQF-----DEDEEESRTGTFGARSRTASFSSALCSLTE 114

Query: 93  ------EIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMI 146
                 E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY+ MI
Sbjct: 115 FEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYYRTMI 170

Query: 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206
           +A+P NPL L NYA++LKE R D +KAEEYC RAIL +PNDGNVLS+Y DLIW+ HKDA 
Sbjct: 171 EANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAP 230

Query: 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDA 236
           RAE+YFDQAVKAAPDDCYVLAS+AHFLWDA
Sbjct: 231 RAETYFDQAVKAAPDDCYVLASYAHFLWDA 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 163/270 (60%), Gaps = 44/270 (16%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDES---------ETASFDGGW----- 86
           MTR LSETDL S  L +K      F     +E E+ES          TASF         
Sbjct: 61  MTRALSETDLSS-QLNRKPLHRRQF-----DEDEEESGTGTFGARSRTASFSSALCSLTE 114

Query: 87  LGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMI 146
             +   E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY+ MI
Sbjct: 115 FEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYYRTMI 170

Query: 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206
           +A+P NPL L NYA++LKE R D +KAEEYC RAIL +PNDGNVLS+Y DLIW+ HKDA 
Sbjct: 171 EANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAP 230

Query: 207 RAESYFDQAVKAAPDDCYVLASHAHFLWDA 236
           RAE+YFDQAVKAAPDDCYVLAS+AHFLWDA
Sbjct: 231 RAETYFDQAVKAAPDDCYVLASYAHFLWDA 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548565|ref|XP_003542671.1| PREDICTED: uncharacterized protein LOC100784254 [Glycine max]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/256 (53%), Positives = 163/256 (63%), Gaps = 20/256 (7%)

Query: 1   MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKA 60
           MLLRSSSTPILNS IPH KDS   P  L  S          TR+L+ +   S   P + +
Sbjct: 6   MLLRSSSTPILNSRIPHPKDSPHEPEILHRSP--------RTRSLTLSASSSSLSPVEAS 57

Query: 61  TSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGD 120
            S +   L+  +    S+T+SF          + G  VGGG  G G +   GGG      
Sbjct: 58  PSRMTRALSETDLSARSKTSSFGSALFSFTESDEGDGVGGGGGGDGWDNGDGGGSG---- 113

Query: 121 GDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180
                  WD NN GN+STDLYY+ MI+A+P NPL L NYAR+LKE RGD +KAEEYC RA
Sbjct: 114 ------FWDSNN-GNDSTDLYYRTMIEANPGNPLFLGNYARYLKEVRGDYVKAEEYCGRA 166

Query: 181 ILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDE 240
           IL +PNDG VLSMY DLIW+S KDASRAE+YFDQAVKAAPDDCYVLAS+AHFLWDA E E
Sbjct: 167 ILANPNDGKVLSMYADLIWESQKDASRAETYFDQAVKAAPDDCYVLASYAHFLWDA-EGE 225

Query: 241 EDEQVGEEPAPPSYNF 256
           ED +V E+ +  S +F
Sbjct: 226 EDVEVQEDSSEISPSF 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.392	0.365	0.660	2.5e-43
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.366	0.324	0.616	4.5e-38
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.374	0.424	0.647	4.2e-31
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.348	0.343	0.553	2.5e-28
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.381	0.332	0.476	3.9e-21
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.374	0.188	0.405	8.4e-16
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.359	0.175	0.391	2.1e-13
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.359	0.188	0.350	2.9e-08

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 70/106 (66%), Positives = 91/106 (85%)

Query:   129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188
             D  + G+++TD++Y+KMI+A+P N + LSNYA+FLKE R D LKAEEYC RAIL+SPNDG
Sbjct:   147 DGGDGGDDNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDG 206

Query:   189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             NVL+MY +L+W+ HKD+SRAE+YF+QAV AAP+DCYV AS+A FLW
Sbjct:   207 NVLAMYAELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 61/99 (61%), Positives = 78/99 (78%)

Query:   136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195
             ++TD YY++MI ++P N LL  NYA+FLKE +GD+ KAEEYC RAIL + NDGNVLS+Y 
Sbjct:   163 DATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYA 222

Query:   196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             DLI  +H+D  RA SY+ QAVK +P+DCYV AS+A FLW
Sbjct:   223 DLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 66/102 (64%), Positives = 80/102 (78%)

Query:   134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLS 192
             G  S D YY++MIQ  P + LLLSNYARFLKE +GD  KAEEYC RA+L  S  DG +LS
Sbjct:   106 GGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLS 165

Query:   193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             MYGDLIW++H D  RA+SY+DQAV+++PDDC VLAS+A FLW
Sbjct:   166 MYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 52/94 (55%), Positives = 68/94 (72%)

Query:   141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             YY++M++++P N LLL NY +FL E   D   AEEY  RAIL +P DG  LSMYG LIW+
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             + +D  RA+ YFDQAV A+P+DC VL S+A F+W
Sbjct:   213 TKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/105 (47%), Positives = 72/105 (68%)

Query:   130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN 189
             P     N  D YY+ M++  P +PLLL NYA+FL E +GDL  AEEY  +  ++ P+DG 
Sbjct:   114 PGYDDKNCGD-YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGV 171

Query:   190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
              L+ YG L+ + H+D ++A SYF++AV+A+PDD  VLA++A FLW
Sbjct:   172 ALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 8.4e-16, P = 8.4e-16
 Identities = 41/101 (40%), Positives = 58/101 (57%)

Query:   134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSM 193
             G   T+L YQ  +  +P NPLLL+NYA+FL     D  +AEEY  RA+ + P D    S 
Sbjct:   416 GYFKTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSK 475

Query:   194 YGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             Y   +W++  D   AE  F +A+ A P + Y  A++A+FLW
Sbjct:   476 YATFLWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLW 516

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/97 (39%), Positives = 55/97 (56%)

Query:   138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197
             T+L YQ  +  +P N LLL+NYA+FL     D  +AE+Y  RA    P D   L+ Y   
Sbjct:   435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query:   198 IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             +W++  D  RAE  + +A+ A P +    A++AHFLW
Sbjct:   495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 34/97 (35%), Positives = 51/97 (52%)

Query:   138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197
             T+L Y+  +  +P N LLL+NYA+FL     D  +AE    +AI     D    S Y   
Sbjct:   400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query:   198 IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
             +W+   D   AE  F +A+ A P + +  A++A+FLW
Sbjct:   460 LWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLW 496


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       228   0.00081  113 3  11 23  0.45    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  199 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.10u 0.09s 21.19t   Elapsed:  00:00:01
  Total cpu time:  21.10u 0.09s 21.19t   Elapsed:  00:00:01
  Start:  Tue May 21 03:07:08 2013   End:  Tue May 21 03:07:09 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI0496 hypothetical protein (304 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	6e-04
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210
            N   L N    L +  GD  +A E   +A+ + P++            +  KD   A  
Sbjct: 1   DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 211 YFDQAVKAAP 220
             ++A++  P
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           YY+K ++ DP N     N A    +  G   +A E   +A+ + P++       G   ++
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 201 SHKDASRAESYFDQAVKAAPD 221
             K    A   +++A++  P+
Sbjct: 81  LGKYE-EALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP 185
            Y+K ++ DP N     N A    +   D  +A E   +A+ + P
Sbjct: 25  AYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
           YQ +++  P N ++L+N A    E      +A EY  RA+ ++PN   +L   G L+ + 
Sbjct: 793 YQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPNIPAILDTLGWLLVEK 850

Query: 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
             +A RA     +AV  AP+   +    A  L       E
Sbjct: 851 -GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202
            K ++ DP + L     A    +  G+L KAE+   RA+ ++PN+G+VL+ YG  + Q  
Sbjct: 55  DKALEHDPDDYLAYLALA-LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-Q 112

Query: 203 KDASRAESYFDQAVKA 218
               +A   F+QA++ 
Sbjct: 113 GKYEQAMQQFEQAIED 128

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 155 LLSNYARFLKEARGDLLKAEEYCARAI----LMSPNDGNVLSMYGDL--IWQSHKDASRA 208
            L+N A  L+   GD  +A E   +A+     +  +         +L  ++ +  D   A
Sbjct: 7   ALNNLALVLRR-LGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 209 ESYFDQAVKAAPD 221
             Y ++A+     
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203
           K ++ DP   L     A    +  G+   A+E   +A+ ++PN+G+VL+ YG  +    +
Sbjct: 60  KALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118

Query: 204 DASRAESYFDQAVKAAPD 221
               A   F++A+ A P 
Sbjct: 119 PEE-AMQQFERAL-ADPA 134

Length = 250

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194
               +  +++ +  +P N  +L+NY  FL + +G   +A +   +AI   P         
Sbjct: 81  LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIE-DPLYPQPARSL 138

Query: 195 GDLIWQSHK--DASRAESYFDQAVKAAPD 221
            +    + K  D  +AE Y  +A++  P 
Sbjct: 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQ 167

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 29/138 (21%), Positives = 44/138 (31%), Gaps = 26/138 (18%)

Query: 5   SSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNV 64
           ++++  L+S  P     S         S    S        +             ATS+ 
Sbjct: 10  AAASTSLSSSRPQLSSFSSRSPQSATRSPRASS--IKCSASAS--------ASSSATSSS 59

Query: 65  FNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGR 124
            + +A       S  ++  GG  G          GGG +GG G   GGGGG  GG G   
Sbjct: 60  ASLVANGAVALLS-ASAISGGGGG----------GGGGFGGFGG--GGGGGGGGGGGWRF 106

Query: 125 WG---SWDPNNHGNNSTD 139
           W    +    +     + 
Sbjct: 107 WLRLFAPADAHADEEQSG 124

Length = 796

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL--I 198
             +K +  DP   L  +  A       GD  +A E   +A+ + P    +      L  +
Sbjct: 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176

Query: 199 WQSHKDASRAESYFDQAVKAAPDD 222
            ++      A    ++A+K  PDD
Sbjct: 177 LEALGRYEEALELLEKALKLNPDD 200

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV 225
             GD  +A EY  +A+ + P++ +         +        A   +++A++  PD+   
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLA-AAYYKLGKYEEALEDYEKALELDPDNAKA 70

Query: 226 LASHAHFLWDADEDEE 241
             +     +   + EE
Sbjct: 71  YYNLGLAYYKLGKYEE 86

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.58
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.53
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
KOG0553	304	consensus TPR repeat-containing protein [General f	99.5
PRK15359	144	type III secretion system chaperone protein SscB;	99.5
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.48
PRK12370	553	invasion protein regulator; Provisional	99.46
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.45
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.42
PRK12370	553	invasion protein regulator; Provisional	99.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.37
KOG1126	638	consensus DNA-binding cell division cycle control	99.36
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.33
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.33
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.3
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.27
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.26
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.26
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.22
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.21
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.19
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.19
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.18
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.16
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.13
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.1
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.1
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.1
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.08
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
PLN02789	320	farnesyltranstransferase	99.06
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.06
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.02
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.01
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.01
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.0
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.98
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.97
KOG2076	895	consensus RNA polymerase III transcription factor	98.97
PRK11906	458	transcriptional regulator; Provisional	98.96
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.95
PLN02789	320	farnesyltranstransferase	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.92
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.92
PRK14574	822	hmsH outer membrane protein; Provisional	98.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.86
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.83
PRK10803	263	tol-pal system protein YbgF; Provisional	98.83
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.83
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.81
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.79
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.78
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.77
KOG0553	304	consensus TPR repeat-containing protein [General f	98.76
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.74
KOG2003	840	consensus TPR repeat-containing protein [General f	98.73
PRK15331	165	chaperone protein SicA; Provisional	98.72
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.68
PRK14574	822	hmsH outer membrane protein; Provisional	98.68
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.64
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.63
PRK11906	458	transcriptional regulator; Provisional	98.61
KOG4234	271	consensus TPR repeat-containing protein [General f	98.6
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.6
PRK10803	263	tol-pal system protein YbgF; Provisional	98.59
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.59
PF12688	120	TPR_5: Tetratrico peptide repeat	98.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.54
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.54
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.53
PRK15331	165	chaperone protein SicA; Provisional	98.53
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.51
KOG1129	478	consensus TPR repeat-containing protein [General f	98.5
KOG2003	840	consensus TPR repeat-containing protein [General f	98.45
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.4
KOG2076	895	consensus RNA polymerase III transcription factor	98.4
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.4
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.4
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.33
KOG1129	478	consensus TPR repeat-containing protein [General f	98.32
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.3
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.28
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.28
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.28
PF12688	120	TPR_5: Tetratrico peptide repeat	98.26
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.24
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.23
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.21
PF13512	142	TPR_18: Tetratricopeptide repeat	98.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.19
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.14
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.13
PF13428	44	TPR_14: Tetratricopeptide repeat	98.11
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.11
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.1
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.1
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.09
PF13431	34	TPR_17: Tetratricopeptide repeat	98.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.07
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.02
PF13428	44	TPR_14: Tetratricopeptide repeat	97.99
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.98
PF13431	34	TPR_17: Tetratricopeptide repeat	97.96
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.95
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.92
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.9
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.87
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.85
KOG4555	175	consensus TPR repeat-containing protein [Function	97.83
KOG4555	175	consensus TPR repeat-containing protein [Function	97.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.81
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.8
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.73
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.71
PLN03077	857	Protein ECB2; Provisional	97.7
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.66
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.64
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.64
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.64
PF13512	142	TPR_18: Tetratricopeptide repeat	97.62
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.58
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.56
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.54
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.52
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.52
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.49
PLN03218	1060	maturation of RBCL 1; Provisional	97.47
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.43
KOG4234	271	consensus TPR repeat-containing protein [General f	97.42
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.39
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.38
PLN03077	857	Protein ECB2; Provisional	97.31
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.31
PLN03218	1060	maturation of RBCL 1; Provisional	97.3
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.2
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.18
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.18
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.14
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.13
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.12
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.12
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.11
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.11
PRK04841	903	transcriptional regulator MalT; Provisional	97.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.98
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.97
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.96
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.96
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.93
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.93
PRK04841	903	transcriptional regulator MalT; Provisional	96.86
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.86
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.86
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.85
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.84
KOG1586	288	consensus Protein required for fusion of vesicles	96.73
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.71
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.68
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.57
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.56
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.45
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.43
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.41
PRK10941	269	hypothetical protein; Provisional	96.39
KOG1310	758	consensus WD40 repeat protein [General function pr	96.33
KOG1585	308	consensus Protein required for fusion of vesicles	96.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.23
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.22
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.19
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.19
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.07
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.06
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.05
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.03
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.91
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.89
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.87
KOG3364	149	consensus Membrane protein involved in organellar	95.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.77
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.65
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.44
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.4
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.39
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.24
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.21
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.19
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.17
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.13
KOG2471	696	consensus TPR repeat-containing protein [General f	95.12
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.11
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.06
PRK10941	269	hypothetical protein; Provisional	95.02
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.98
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.88
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.85
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.84
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.79
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.56
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.46
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.37
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.14
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.13
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.1
KOG1310	758	consensus WD40 repeat protein [General function pr	93.99
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.92
KOG2471	696	consensus TPR repeat-containing protein [General f	93.86
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.79
COG2912	269	Uncharacterized conserved protein [Function unknow	93.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.15
KOG1258	577	consensus mRNA processing protein [RNA processing	93.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.05
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.9
KOG1258	577	consensus mRNA processing protein [RNA processing	92.88
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.84
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.83
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.81
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	92.79
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.77
KOG1586	288	consensus Protein required for fusion of vesicles	92.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.16
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.02
KOG3364	149	consensus Membrane protein involved in organellar	91.94
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.92
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.43
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.27
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.17
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.09
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.97
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.78
KOG0529	421	consensus Protein geranylgeranyltransferase type I	90.61
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.52
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.5
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.33
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.59
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.5
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.32
KOG1585	308	consensus Protein required for fusion of vesicles	88.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.17
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.87
PLN03138	796	Protein TOC75; Provisional	87.45
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.28
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.46
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.45
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.35
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.88
KOG4814	872	consensus Uncharacterized conserved protein [Funct	85.67
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	85.53
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	85.46
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.36
KOG4814	872	consensus Uncharacterized conserved protein [Funct	84.8
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.44
COG3947	361	Response regulator containing CheY-like receiver a	84.41
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.9
KOG2422	665	consensus Uncharacterized conserved protein [Funct	83.38
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	83.32
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.94
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.26
COG2912	269	Uncharacterized conserved protein [Function unknow	81.84
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.01
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.82
COG4907	595	Predicted membrane protein [Function unknown]	80.6

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.60  E-value=2.5e-14  Score=124.67  Aligned_cols=123  Identities=11%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--ASRAE  209 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~--~e~A~  209 (270)
                      .++.++++..|+++++.+|++..+|..+|..+. ..|++++|++.|++|++++|+++.++..+|.+++...|+  +++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            568899999999999999999999999996666 589999999999999999999999999999876554777  59999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCC
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYN  255 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~  255 (270)
                      .+++++++.+|++..++..+|.+++..|++++|....+. +...||.
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999987666 5555553

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.58  E-value=3e-14  Score=117.96  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=82.5

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      .+.|++++|+.+|++++.++|++..++..+|.++. ..|++++|+..|++|++++|+++.+++++|.++.. .|++++|+
T Consensus        35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi  112 (144)
T PRK15359         35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAR  112 (144)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence            34567888888888888888888888888885555 46888888888888888888888888888866665 88888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      ..|+++++++|+++..+.+++.+...+
T Consensus       113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        113 EAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            888888888888888888877776543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=4.7e-14  Score=138.29  Aligned_cols=129  Identities=15%  Similarity=0.190  Sum_probs=114.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|..+|..+-|+..|+++|++.|+.+.+++++|+++.+ .|+..+|+.+|.+|+.+.|++++++.++|+++-+ ++.+++
T Consensus       295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~  372 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEE  372 (966)
T ss_pred             EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchH
Confidence            44556899999999999999999999999999999997 6999999999999999999999999999977766 899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ  258 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~  258 (270)
                      |..+|.+|++++|....+..++|.+|.++|+.++|..+-++.-.+.|.|-+
T Consensus       373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd  423 (966)
T KOG4626|consen  373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD  423 (966)
T ss_pred             HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence            999999999999999999999999999999999998765666666676644

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=9e-14  Score=122.74  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=108.9

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |-++|++..|..-+++||+.||++..+|..+| .+++..|+.+.|.+.|++|+.++|++.+++.+||+.+.. +|++++|
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA  122 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEA  122 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHH
Confidence            45568999999999999999999999999999 777789999999999999999999999999999988888 8999999


Q ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243          209 ESYFDQAVKA--APDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF  256 (270)
Q Consensus       209 ~~~~ekAL~~--~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f  256 (270)
                      ..+|++|+..  .+.....+.+++.+..++|+.+.++...+.....+|.|
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            9999999974  34578899999999999999999987655533334444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=1.4e-13  Score=125.39  Aligned_cols=107  Identities=18%  Similarity=0.192  Sum_probs=100.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      +++|.+|+..|.+||+++|+|+.++.+.|.++. .+|.++.|++.|+.||.+||++..+|.+|+.+++. +|++++|++.
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~a  171 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEA  171 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHH
Confidence            479999999999999999999999999997777 58999999999999999999999999999966666 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDE  240 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~e  240 (270)
                      |+|||+++|++..+..++..+-..+++..
T Consensus       172 ykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  172 YKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999888888766

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.50  E-value=1.1e-13  Score=114.53  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243          138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK  217 (270)
Q Consensus       138 A~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~  217 (270)
                      -..+|+++++++|++   +..+|..+.. .|++++|+.+|++++.++|.+..++..+|.++.. .|++++|+..|+++++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            357899999999996   4567867774 7999999999999999999999999999977777 9999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          218 AAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       218 ~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      ++|+++.+++++|.++...|+.++|....+..-...|.
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999765553333343

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.48  E-value=8e-14  Score=136.71  Aligned_cols=127  Identities=19%  Similarity=0.168  Sum_probs=73.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      .++.+++|..+|.++++.+|+.+.+++++|.++. .+|++++|+.+|+.||.++|+.++++.++|+.+-. +|+...|+.
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k-qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke-~g~v~~A~q  443 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK-QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE-MGDVSAAIQ  443 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH-hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH-hhhHHHHHH
Confidence            3455556666666666666666666666663333 35666666666666666666666666666655554 566666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCCC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQR  259 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~~  259 (270)
                      +|.+|+.++|..+++..++|.+|.+.|+..+|.+.-+....+.|.|+++
T Consensus       444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence            6666666666666666666666666666666554333333345555554

>PRK12370 invasion protein regulator; Provisional

Probab=99.46  E-value=8.1e-13  Score=131.24  Aligned_cols=116  Identities=14%  Similarity=0.152  Sum_probs=101.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..+++++|+.+++++++++|+++.++..+|.++. ..|++++|+++|++|++++|+++.+++.+|.++.. .|++++|+.
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3457899999999999999999999999996665 57999999999999999999999999999977777 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+++++++|.++.+...++.+++..|++++|....+.
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999888777777778888998888765444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.45  E-value=7.4e-13  Score=132.65  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=83.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .+|...|++++|+..|+++++++|++..++..+|.++. ..|++++|+.+|+++++++|+++.+++.+|.+++. .|+++
T Consensus       339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  416 (615)
T TIGR00990       339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFA  416 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34455667777777777777777777777777775555 36777777777777777777777777777766665 77777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +|+.+|+++++++|++..++..+|.++..+|+++++....+
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~  457 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR  457 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            77777777777777777777777777777777777665433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=7.4e-13  Score=116.97  Aligned_cols=119  Identities=23%  Similarity=0.276  Sum_probs=109.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g  203 (270)
                      .+|+..|+.+.|.+.|++|+.++|++..+++|||.+|+. +|++++|.+.|++|++ +|.   -...+.+++.+.++ +|
T Consensus        77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-~g  153 (250)
T COG3063          77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-AG  153 (250)
T ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-cC
Confidence            567888999999999999999999999999999999995 8999999999999998 664   55789999966666 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++.|..+|+++|+++|+++.....++..++..|++..|....+.
T Consensus       154 q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         154 QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence            999999999999999999999999999999999999999876554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.42  E-value=1.6e-12  Score=130.18  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=110.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|+++.+++.+|.+++ ..|++++|+++|+++++++|++..++..+|.+++. +|++++
T Consensus       374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~e  451 (615)
T TIGR00990       374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIAS  451 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHH
Confidence            3456789999999999999999999999999997766 58999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+|+++++.+|+++.++..+|.++..+|+++++....+.
T Consensus       452 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  492 (615)
T TIGR00990       452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT  492 (615)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999865444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.42  E-value=1.5e-12  Score=104.57  Aligned_cols=107  Identities=15%  Similarity=0.042  Sum_probs=96.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243          140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (270)
Q Consensus       140 ~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~  219 (270)
                      +.|+++++.+|++..+...+|..++ ..|++++|.++++++++++|+++.++..+|.+++. ++++++|+.+|+++++.+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            4688999999999999999996666 47999999999999999999999999999977777 899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          220 PDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       220 P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+++.+++.+|.+++..|+.+++....+.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDL  110 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999866554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=2.8e-12  Score=117.95  Aligned_cols=116  Identities=9%  Similarity=0.001  Sum_probs=98.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|++.|++|++++|++..++.++|.+++. .|++++
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~e  150 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYEL  150 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHH
Confidence            4456689999999999999999999999999996666 58999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |+..|+++++.+|+++.....+ .+....++.+++....
T Consensus       151 A~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        151 AQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence            9999999999999998532222 2344556677777554

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=3e-12  Score=127.16  Aligned_cols=120  Identities=14%  Similarity=0.083  Sum_probs=107.3

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .+...+++++|+.+|+++++++|+++.+++.+|.++. ..|++++|+++|++|++++|.++.++..++.+++. .|++++
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~ee  424 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDD  424 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHH
Confidence            4455789999999999999999999999999997776 48999999999999999999999887777767777 899999


Q ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHhccCCC
Q 024243          208 AESYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDEQVGEEP  249 (270)
Q Consensus       208 A~~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~~~~e~~  249 (270)
                      |+.+++++++.+ |+++.++..++.++..+|+.++|.......
T Consensus       425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            999999999885 789999999999999999999999765543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.38  E-value=7.1e-12  Score=118.41  Aligned_cols=105  Identities=16%  Similarity=0.138  Sum_probs=97.7

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++||+++|+++.+++.+|.+++. +|++++|+.
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~   91 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKA   91 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence            4579999999999999999999999999997777 58999999999999999999999999999977777 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      +|+++++++|++..+...++.+...+.
T Consensus        92 ~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         92 ALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988876663

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.37  E-value=7.3e-12  Score=131.71  Aligned_cols=120  Identities=16%  Similarity=0.168  Sum_probs=109.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      |++++|+..|+++++++|+ +.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            8999999999999999997 999999996666 58999999999999999999999999999977777 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      +++++++|+++.+++++|.++...|+.+++....+..-...|.
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999876664344444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=4.6e-13  Score=131.87  Aligned_cols=122  Identities=18%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      -|++|..+++.+.|+++|++|+++||+.+.++..+|.-+. .+.++++|..+|++||..||.+..+|+.+|.++.+ +++
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek  504 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK  504 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence            5678888889999999999999988888888888874444 46788888888888888888888888888866666 788


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++.|+-+|++|++++|.+-.++..++.++.+.|+.++|-...+.
T Consensus       505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~  548 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK  548 (638)
T ss_pred             hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence            88888888888888887777777788888777777777765544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.36  E-value=9.3e-12  Score=108.48  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=88.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD--LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd--~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      +.|...+++++|+..|+++++++|+++.++..+|.+++...|+  +++|.+.++++++++|++..+++.+|..+++ +|+
T Consensus        81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~  159 (198)
T PRK10370         81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QAD  159 (198)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCC
Confidence            4556778999999999999999999999999999877555677  5999999999999999999999999987887 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHH
Q 024243          205 ASRAESYFDQAVKAAPDDCYV  225 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~  225 (270)
                      +++|+.+|+++++.+|.+..-
T Consensus       160 ~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        160 YAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHHHHhhCCCCccH
Confidence            999999999999999875543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.34  E-value=1.9e-11  Score=98.09  Aligned_cols=100  Identities=13%  Similarity=0.028  Sum_probs=90.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..|+++++.+|+++.++..+|.+++. .|++++|+.+|+++++++|.++..++.+|.+++. .|+++
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~  102 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPE  102 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHH
Confidence            344567899999999999999999999999999977774 7999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      +|+.+|+++++.+|++......
T Consensus       103 ~A~~~~~~al~~~p~~~~~~~~  124 (135)
T TIGR02552       103 SALKALDLAIEICGENPEYSEL  124 (135)
T ss_pred             HHHHHHHHHHHhccccchHHHH
Confidence            9999999999999988764433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.34  E-value=1.5e-11  Score=103.88  Aligned_cols=119  Identities=24%  Similarity=0.322  Sum_probs=90.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..++++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++.+++.++.. +|+++
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~  116 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYE  116 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHH
Confidence            33455688999999999999999999999888886555 47999999999999999999888888888866665 77777


Q ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          207 RAESYFDQAVKAA--PDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       207 ~A~~~~ekAL~~~--P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +|+.+|++++...  +.....+..++.+++..|+.+++....+
T Consensus       117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (234)
T TIGR02521       117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT  159 (234)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777777643  3445566667777777777666665433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=1.4e-12  Score=128.46  Aligned_cols=123  Identities=18%  Similarity=0.161  Sum_probs=112.4

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ..+.++|.|..+|++||..+|.+..+|+.+|.++. ++++++.|+-+|++|+++||.+..++..++.++.+ .|+.++|+
T Consensus       466 ~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL  543 (638)
T KOG1126|consen  466 IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKAL  543 (638)
T ss_pred             hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHH
Confidence            44679999999999999999999999999996555 68999999999999999999999999999966666 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCC
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY  254 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p  254 (270)
                      .+|++|+.++|.++...+..+.+++..+++++|-.++|+++.+-|
T Consensus       544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP  588 (638)
T KOG1126|consen  544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP  588 (638)
T ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999988888655544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.33  E-value=3e-11  Score=102.03  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=106.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~  204 (270)
                      ..|...+++++|+.+|+++++.+|.+..++.++|.++. ..|++++|+++|++++...  +.....+..++.+++. .|+
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~  150 (234)
T TIGR02521        73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGD  150 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCC
Confidence            45566789999999999999999999999999997776 4799999999999999864  5667888999977777 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++|..+|+++++.+|++..++..++.++...|+++++....+.
T Consensus       151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  194 (234)
T TIGR02521       151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER  194 (234)
T ss_pred             HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999866544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.33  E-value=2.8e-12  Score=115.97  Aligned_cols=121  Identities=22%  Similarity=0.241  Sum_probs=91.0

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      -+.+|.+.|+.++|+.+|+++++++|+++.++..++.++. ..|++++|.+.+....+..|.++..+..+|.++.. .|+
T Consensus       152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~  229 (280)
T PF13429_consen  152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGR  229 (280)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccc
Confidence            3456677889999999999999999999999999986665 47899998888888888888888899999977776 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +++|+.+|+++++.+|+|+.++..+|.++...|+.++|.....
T Consensus       230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999986543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.31  E-value=1.7e-11  Score=124.26  Aligned_cols=120  Identities=13%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLK----AEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~e----A~e~~ekAIeldP~n~~al~~lA~ll~~~~  202 (270)
                      ..+...|++++|+..|+++++.+|+++.++.++|..+.. .|++++    |+.+|+++++++|++..++..+|.++.. .
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~  297 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-T  297 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-C
Confidence            344556788899999999999999998888888866664 788875    7888999999999988899899877777 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |++++|+.+++++++++|+++.++..++.++...|+++++....+.
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8999999999999999998888888899999888988888866544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.30  E-value=3.5e-11  Score=110.67  Aligned_cols=114  Identities=12%  Similarity=0.091  Sum_probs=101.6

Q ss_pred             CChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          133 HGNNSTDLYYQKMIQADP---R-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP---~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      ...+.++..+.++|...|   . .+.+|+.+|..+. ..|++++|+..|++|++++|+++.+|..+|.++.. .|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            467899999999997444   3 3788999995555 58999999999999999999999999999976666 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +..|+++++++|++..++.++|.+++..|+++++....+.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~  157 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA  157 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999876555

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.27  E-value=5.1e-11  Score=119.56  Aligned_cols=113  Identities=23%  Similarity=0.316  Sum_probs=62.6

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...|++++|+.+|+++++.+|+++.++.+++..+. ..|+ .+|++++++++++.|+++.++..+|.+++. .|++++|+
T Consensus       781 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~  857 (899)
T TIGR02917       781 LAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRAL  857 (899)
T ss_pred             HHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence            33455555555555555555555555555553333 2455 555555555555555555555555544444 56666666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .+|+++++.+|.++.++.+++.+++..|+.+++...
T Consensus       858 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  893 (899)
T TIGR02917       858 PLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE  893 (899)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666665566666666666666665555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=3.8e-11  Score=114.84  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=108.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ++|...++.++|+.+|++|+++||....+|..+|.-+.+ ..+...|++.|++||+++|.|..+|+.+|..+.. ++-..
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~  415 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHF  415 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchH
Confidence            577777899999999999999999999999999977775 6999999999999999999999999999976666 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      =|+-+|++|++..|+|..+|..+|.+|.++++.++|...
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC  454 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC  454 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999999865

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.26  E-value=8.1e-11  Score=119.84  Aligned_cols=113  Identities=10%  Similarity=0.013  Sum_probs=106.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      +.|.+++|...++.+++.+|++..++.+++.++.+ ++++++|+..+++++..+|+++.++..+|.++.+ +|++++|++
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~  175 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADA  175 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHH
Confidence            35899999999999999999999999999988885 7999999999999999999999999999965555 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|++++..+|+++.++..+|.++...|+.++|...
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~  210 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV  210 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999998854

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.26  E-value=1.1e-10  Score=98.11  Aligned_cols=86  Identities=9%  Similarity=-0.047  Sum_probs=74.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .|++++|+..|+-+..+||.+...|++||.++ +.+|+|.+|+..|.+|+.++|+|+.++.++|.+++. .|+.+.|+..
T Consensus        48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~a  125 (157)
T PRK15363         48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIKA  125 (157)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHH
Confidence            47899999999999999999999999999444 467999999999999999999999999999966666 9999999999


Q ss_pred             HHHHHHhC
Q 024243          212 FDQAVKAA  219 (270)
Q Consensus       212 ~ekAL~~~  219 (270)
                      |+.|+...
T Consensus       126 F~~Ai~~~  133 (157)
T PRK15363        126 LKAVVRIC  133 (157)
T ss_pred             HHHHHHHh
Confidence            99998876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.24  E-value=6.7e-11  Score=119.95  Aligned_cols=119  Identities=19%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             ccccCCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243          128 WDPNNHGNNS----TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       128 ~Ye~~gd~~e----A~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g  203 (270)
                      .|...|++++    |+.+|+++++++|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..++.++.. .|
T Consensus       255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G  332 (656)
T PRK15174        255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VG  332 (656)
T ss_pred             HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC
Confidence            3445677775    899999999999999999999997777 48999999999999999999999999999977777 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++++|+..|+++++.+|++..++..++.++...|+.+++....+.
T Consensus       333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~  377 (656)
T PRK15174        333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH  377 (656)
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999988888889999999999999876444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.22  E-value=8.6e-11  Score=123.72  Aligned_cols=116  Identities=11%  Similarity=0.095  Sum_probs=107.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..+.+.|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.+++++|.++.. +|+++
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~  694 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMA  694 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            445667999999999999999999999999999977775 7999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|+.+|+++++++|++..+...++.++....+.+.+-+
T Consensus       695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887777765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.21  E-value=1.4e-10  Score=124.32  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=105.1

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW---------  199 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~---------  199 (270)
                      +...+++++|+.+|+++++++|+++.++..+|.++. .+|++++|+++|+++++++|++..++..++.++.         
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~  439 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA  439 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence            345689999999999999999999999999997766 5899999999999999999999988876664421         


Q ss_pred             --------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          200 --------------------------------QSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       200 --------------------------------~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                                                      ...|++++|+.+|+++++++|+++.+++.++.+|+..|+.+++....+
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                            137999999999999999999999999999999999999999997655


Q ss_pred             C
Q 024243          248 E  248 (270)
Q Consensus       248 ~  248 (270)
                      .
T Consensus       520 ~  520 (1157)
T PRK11447        520 R  520 (1157)
T ss_pred             H
Confidence            5

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=9.9e-11  Score=83.84  Aligned_cols=68  Identities=26%  Similarity=0.336  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 024243          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESYFDQAVKAAP  220 (270)
Q Consensus       151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-~~e~A~~~~ekAL~~~P  220 (270)
                      .++.+|..+|..++. .|++++|+++|++||+++|+++.+++++|.+++. +| ++++|+.+|+++++++|
T Consensus         1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            367899999977774 8999999999999999999999999999977777 88 79999999999999998

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.19  E-value=1.4e-10  Score=124.22  Aligned_cols=120  Identities=17%  Similarity=0.236  Sum_probs=104.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH--------------HH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV--------------LS  192 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a--------------l~  192 (270)
                      ..+...|++++|+.+|+++++++|+++.++..+|.++. .+|++++|+++|+++++++|++...              +.
T Consensus       277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            44566789999999999999999999999999997776 5899999999999999999987532              23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ..+.++.. .|++++|+.+|+++++++|++..++..+|.++...|++++|....+.
T Consensus       356 ~~g~~~~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~  410 (1157)
T PRK11447        356 QQGDAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ  410 (1157)
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34555666 89999999999999999999999999999999999999999976555

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.19  E-value=2.5e-10  Score=96.10  Aligned_cols=99  Identities=15%  Similarity=0.032  Sum_probs=90.0

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243          145 MIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       145 ALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~  223 (270)
                      +..++ ++.-..++.+|..++. .|++++|+.+|+-+..+||.+...|++|| ++.+.+|++++|+..|.+|+.++|+++
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG-~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLG-ECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            44567 7888899999977775 89999999999999999999999999999 555559999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcHHHHhc
Q 024243          224 YVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       224 ~~~~~la~il~~~Ge~eea~~~  245 (270)
                      ..++++|.+++..|+.+.+...
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~a  125 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKA  125 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999853

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.19  E-value=3.5e-10  Score=101.46  Aligned_cols=114  Identities=17%  Similarity=0.113  Sum_probs=106.5

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ..+|++.+|+..++++.+++|+|..+|..+|.+|- ..|++++|...|.+|+++.|+++.++.|++..++. .|++++|+
T Consensus       111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~  188 (257)
T COG5010         111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAE  188 (257)
T ss_pred             HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHH
Confidence            45789999999999999999999999999995555 58999999999999999999999999999977777 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .++.++...-+.+..+..+++.+...+|+.+++++-
T Consensus       189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            999999999888999999999999999999999864

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.18  E-value=4.7e-10  Score=86.94  Aligned_cols=99  Identities=13%  Similarity=0.127  Sum_probs=85.8

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS  201 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~  201 (270)
                      .+..++++++|+..|+++++.+|++   +.+++.+|.++.. .|++++|+++|++++..+|++   ..++..+|.++.. 
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-   88 (119)
T TIGR02795        11 LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-   88 (119)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-
Confidence            4556789999999999999999987   5788889977774 799999999999999999885   6789999977776 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          202 HKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      .+++++|+.+++++++..|++..+...
T Consensus        89 ~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        89 LGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             hCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            999999999999999999998776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.16  E-value=2.9e-10  Score=114.15  Aligned_cols=120  Identities=20%  Similarity=0.215  Sum_probs=108.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..|+++++.+|++..++..+|..+. ..|++++|++.++++++.+|.+..++..++.+++. .|+++
T Consensus       133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  210 (899)
T TIGR02917       133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIE  210 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHH
Confidence            44556789999999999999999999999999997776 47999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus       211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  252 (899)
T TIGR02917       211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA  252 (899)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999866544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.15  E-value=3.5e-10  Score=99.23  Aligned_cols=117  Identities=13%  Similarity=0.005  Sum_probs=71.7

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-------hCCHHHHHHHHHHHHHhCCCCHHHH------
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-------RGDLLKAEEYCARAILMSPNDGNVL------  191 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~---al~~lA~~l~~~-------~Gd~~eA~e~~ekAIeldP~n~~al------  191 (270)
                      .|...+++++|+..|+++++.+|+++.   +++.+|.+++..       .|++++|++.|+++++.+|++..++      
T Consensus        79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302        79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            334456677777777777777666654   456666554431       1566667777777777777665432      


Q ss_pred             -----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHhc
Q 024243          192 -----------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       192 -----------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~la~il~~~Ge~eea~~~  245 (270)
                                 ..+|.+++. .|++.+|+..|+++++..|++   +.+++.++.++..+|+++++...
T Consensus       159 ~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~  225 (235)
T TIGR03302       159 DYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA  225 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence                       233444444 677777777777777765543   45667777777777776666654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.14  E-value=6.9e-10  Score=114.37  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=107.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++++|+++.++..++.++. ..|++++|+.+++++++.+|+++. +..+|.++.. .|+++
T Consensus        57 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~  133 (765)
T PRK10049         57 VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHW  133 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHH
Confidence            34566789999999999999999999999999997676 479999999999999999999999 9999977776 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+..|+++++.+|++..++..++.++...++.++|....+.
T Consensus       134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~  175 (765)
T PRK10049        134 DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD  175 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence            999999999999999999999999999998888877765554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=3.5e-10  Score=80.69  Aligned_cols=89  Identities=19%  Similarity=0.242  Sum_probs=63.6

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...+++++|+.+++++++..|.+..++..+|.++.. .+++++|+++|++++...|.+..++..++.++.. .+++++|.
T Consensus        11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~   88 (100)
T cd00189          11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEAL   88 (100)
T ss_pred             HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHH
Confidence            345677777777777777777777777777755553 5777777777777777777777777777765555 67777777


Q ss_pred             HHHHHHHHhCC
Q 024243          210 SYFDQAVKAAP  220 (270)
Q Consensus       210 ~~~ekAL~~~P  220 (270)
                      .++.++++.+|
T Consensus        89 ~~~~~~~~~~~   99 (100)
T cd00189          89 EAYEKALELDP   99 (100)
T ss_pred             HHHHHHHccCC
Confidence            77777777665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.13  E-value=7.5e-10  Score=97.15  Aligned_cols=120  Identities=17%  Similarity=0.147  Sum_probs=101.3

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQS  201 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~  201 (270)
                      .|...+++++|+..|+++++.+|+++   .+++.+|.++. ..|++++|+..|+++++.+|+++.   +++.++.+++..
T Consensus        42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~  120 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ  120 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence            34557899999999999999999986   57799997777 489999999999999999998887   688889777762


Q ss_pred             -------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhccCC
Q 024243          202 -------HKDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       202 -------~g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~~e~  248 (270)
                             .+++++|+..|+++++.+|++..+.                 ..++.+++..|++.++....+.
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  191 (235)
T TIGR03302       121 IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET  191 (235)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                   2789999999999999999986543                 3568889999999999865444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.10  E-value=9.1e-10  Score=102.92  Aligned_cols=117  Identities=17%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-~~al~~lA~ll~~~~g~~e~  207 (270)
                      |...+++++|+.+|+++++.+|++..++..+|..+. ..|++++|+++|+++++.+|.+ ..++..++.++.. .|++++
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~  267 (389)
T PRK11788        190 ALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAE  267 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHH
Confidence            345689999999999999999999999999996666 4799999999999999999876 4567788877776 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+++++++.+|+...+ ..++.++...|+.++|....+.
T Consensus       268 A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~  307 (389)
T PRK11788        268 GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLRE  307 (389)
T ss_pred             HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999977544 8899999999999999876554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.3e-09  Score=99.59  Aligned_cols=123  Identities=12%  Similarity=0.084  Sum_probs=109.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--ASRAES  210 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~--~e~A~~  210 (270)
                      .+.+..+.-++.-|+.||+|..-|..||.++. .+|+++.|...|.+|+++.|+|++++..+|.+++...+.  ..++..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            46889999999999999999999999997777 589999999999999999999999999999998775443  458999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYNF  256 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f  256 (270)
                      .|+++++.+|.|..+++.++..++.+|++.++...-+. +...||+-
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999977555 66666653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.10  E-value=6e-10  Score=104.14  Aligned_cols=117  Identities=9%  Similarity=0.009  Sum_probs=75.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHc
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-----VLSMYGDLIWQSH  202 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-----al~~lA~ll~~~~  202 (270)
                      .|...|++++|+.+|+++++.+|.+..++..++.++. ..|++++|++.++++++.+|.+..     .+..++.++.. .
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~  193 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-R  193 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-C
Confidence            3445567777777777777777776666666665444 357777777777777666665422     34455544444 6


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +++++|+.+|+++++.+|++..++..++.++...|+.++|....
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  237 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL  237 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            67777777777777666666666666777777777666666543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.08  E-value=5.1e-10  Score=79.40  Aligned_cols=64  Identities=23%  Similarity=0.422  Sum_probs=55.4

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243          158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~  223 (270)
                      .+|..++. .|++++|+++|+++++.+|+++++++.+|.+++. +|++++|+.+|+++++++|+++
T Consensus         2 ~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            56766664 7999999999999999999999999999988887 9999999999999999999875

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=3.2e-10  Score=110.67  Aligned_cols=114  Identities=13%  Similarity=0.057  Sum_probs=84.7

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      |..|-..++|++|+.+|+.||+.+|+|...|+.||..+. .-.+..+|++.|+||+++.|++..+++++| +.+.++|.|
T Consensus       437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlg-IS~mNlG~y  514 (579)
T KOG1125|consen  437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLG-ISCMNLGAY  514 (579)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhh-hhhhhhhhH
Confidence            356666778888888888888888888888888885555 346778888888888888888888888888 444448888


Q ss_pred             HHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCcHH
Q 024243          206 SRAESYFDQAVKAAPD----------DCYVLASHAHFLWDADEDEE  241 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~----------~~~~~~~la~il~~~Ge~ee  241 (270)
                      .+|+.+|-.||.+.+.          +..+|..+-.++...++.|-
T Consensus       515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            8888888888877654          12577777777777777663

>PLN02789 farnesyltranstransferase

Probab=99.06  E-value=3.2e-09  Score=99.23  Aligned_cols=111  Identities=9%  Similarity=0.043  Sum_probs=78.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SRA  208 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~--e~A  208 (270)
                      .+..++|+..+.++|+++|++..+|...+.++.. ++ ++++|+.+++++|+.+|++..+|...+.++.. .++.  +++
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~e  127 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKE  127 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHH
Confidence            3466777777777777777777777777755553 45 56777777777777777777777777755544 5543  566


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +.+++++++.+|++..+|...+.++...++++++.+
T Consensus       128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~  163 (320)
T PLN02789        128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE  163 (320)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence            777777777777777777777777777777666654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.7e-09  Score=103.71  Aligned_cols=117  Identities=14%  Similarity=0.136  Sum_probs=107.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      +=|-..++...|+..|++|++++|.+-.+|+.+|+.+. ..+-..-|+-+|++|++..|+|...|..+|.++-. .++.+
T Consensus       372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~  449 (559)
T KOG1155|consen  372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLE  449 (559)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHH
Confidence            44556689999999999999999999999999996665 57999999999999999999999999999987765 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+.+|.+|+...-.+..++..+|.+|.++++.++|...
T Consensus       450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY  488 (559)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999988999999999999999999999853

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.4e-09  Score=105.61  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      -+...++|..|+.+|.+||+.+|+++.++.|.|.++. .++++..|++.++++|++||++..+|..-|.++.. +.+|++
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydk  444 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDK  444 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHH
Confidence            3455689999999999999999999999999996666 68999999999999999999999999999966666 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      |++.|+++++.+|++..+...+..++..+
T Consensus       445 Aleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  445 ALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999998864

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.02  E-value=7.5e-10  Score=82.77  Aligned_cols=81  Identities=19%  Similarity=0.318  Sum_probs=66.9

Q ss_pred             CCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      +++++.|+.+|+++++.+|.  +..+++.+|.+++. .|+|++|++++++ ++.+|.+....+.+|.+++. +|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            56889999999999999985  46677778988885 7999999999988 88888888888888888887 99999999


Q ss_pred             HHHHHH
Q 024243          210 SYFDQA  215 (270)
Q Consensus       210 ~~~ekA  215 (270)
                      .+|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            998875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.02  E-value=1.1e-09  Score=99.07  Aligned_cols=120  Identities=19%  Similarity=0.161  Sum_probs=98.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeld--P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ..|...++++++...++++.+..  +.++.+|..+|.++. ..|+.++|+++|++|++++|+|..++..+++++.. .|+
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~  195 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGD  195 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCC
Confidence            34556789999999999988765  778999999996666 58999999999999999999999999999988877 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++++...+....+..|+++.++..+|.++..+|+.++|....+.
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            99999999999999899999999999999999999999865444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.01  E-value=4.8e-09  Score=101.03  Aligned_cols=114  Identities=17%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...+++++|+..++..+...|+|+.++-..+..+.+ .++..+|.+.+++++.++|+.+..+.+||..++. .|++.+|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence            345799999999999999999999999999977764 7999999999999999999999999999988888 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .++++.+..+|+++..|..++..|-.+|+..++...
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            999999999999999999999999999998777643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.01  E-value=6.4e-09  Score=87.41  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=34.5

Q ss_pred             cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW  199 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~  199 (270)
                      .++++++|+..|++++.+.|+.   +.++.++|.++. ..|++++|+++|++|++++|.+...+.+++.++.
T Consensus        47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            3445555555555555554432   234555553333 3455555555555555555555555555554444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.01  E-value=6e-09  Score=88.10  Aligned_cols=91  Identities=19%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--  204 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~--  204 (270)
                      ...+++++|+.+|+++++++|+.   ..++.++|.++. ..|++++|+++|+++++++|++..++..++.++.. .++  
T Consensus        46 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  123 (172)
T PRK02603         46 QADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKA  123 (172)
T ss_pred             HHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChH
Confidence            34456666666666666554442   345555553333 35666666666666666666666666556544443 444  


Q ss_pred             ------------HHHHHHHHHHHHHhCCCC
Q 024243          205 ------------ASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       205 ------------~e~A~~~~ekAL~~~P~~  222 (270)
                                  +++|++++++++..+|++
T Consensus       124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             hHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                        345555555555555554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.01  E-value=3e-09  Score=75.76  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      +++.+|..+.. .|++++|+..++++++..|++..++..+|.++.. .+++++|+.+|+++++..|.+..++..++.++.
T Consensus         2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            46778866664 7999999999999999999999999999987777 899999999999999999999999999999999


Q ss_pred             HcCCcHHHHhccC
Q 024243          235 DADEDEEDEQVGE  247 (270)
Q Consensus       235 ~~Ge~eea~~~~e  247 (270)
                      ..|+.+++....+
T Consensus        80 ~~~~~~~a~~~~~   92 (100)
T cd00189          80 KLGKYEEALEAYE   92 (100)
T ss_pred             HHHhHHHHHHHHH
Confidence            9999888876543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.00  E-value=5.3e-09  Score=107.86  Aligned_cols=114  Identities=11%  Similarity=-0.004  Sum_probs=106.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .|+.++|+..|++++..+|....++..+|.++. ..|++++|+++|+++++++|+++.++..++.++.. .|++++|+.+
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~~  105 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALVK  105 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            479999999999999999999999999996666 58999999999999999999999999999977776 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++++++.+|++.. +..++.++...|+.+++....+.
T Consensus       106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~  141 (765)
T PRK10049        106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ  141 (765)
T ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999 99999999999999999877665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.00  E-value=2.5e-09  Score=101.06  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          157 SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       157 ~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      ...|..++ ..|+|++|+++|++||+++|++..++.++|.++.. +|++++|+.++++|++++|+++.+++.+|.+++.+
T Consensus         6 ~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          6 EDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            34565666 47999999999999999999999999999977777 99999999999999999999999999999999999


Q ss_pred             CCcHHHHhccCC
Q 024243          237 DEDEEDEQVGEE  248 (270)
Q Consensus       237 Ge~eea~~~~e~  248 (270)
                      |++++|....+.
T Consensus        84 g~~~eA~~~~~~   95 (356)
T PLN03088         84 EEYQTAKAALEK   95 (356)
T ss_pred             CCHHHHHHHHHH
Confidence            999999876554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.2e-09  Score=105.17  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=82.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      +..+..+-.+.|.+|..+||.|+.+++..|++.+ ..++|++|+.-|++|+.++|++.-++..++-+.|+ ++++++++.
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~  449 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMK  449 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHH
Confidence            3355666667777777777777777777776555 36777777777777777777777777777766666 667777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .|+.+.+..|+.+.++...|.++-++++++.|.+.
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~  484 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ  484 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence            77777777777777777777777777777777643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2.4e-09  Score=103.19  Aligned_cols=117  Identities=15%  Similarity=0.160  Sum_probs=107.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .||...|+.-.|...++++|+++|.+...+..+|..+. .+.+..+-.+.|.+|..+||+|+++|+..|.+.+. .++++
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~-d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e  411 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA-DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYE  411 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh-hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHH
Confidence            56777788899999999999999999998888885555 47999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+..|++++.++|++...+..++.+++++++.++....
T Consensus       412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~  450 (606)
T KOG0547|consen  412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKT  450 (606)
T ss_pred             HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.98  E-value=3.6e-09  Score=95.02  Aligned_cols=114  Identities=19%  Similarity=0.172  Sum_probs=103.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .|+-+.+..+..+.+..+|.+..++..+|..... .|+|.+|+..+++|..++|+|.++|..+|.+|.+ .|+++.|...
T Consensus        79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~a  156 (257)
T COG5010          79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRA  156 (257)
T ss_pred             cccccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHH
Confidence            3566778888889899999999999889977774 8999999999999999999999999999955555 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      |.+++++.|+++.+..+++..++-.|+.+.++..+.
T Consensus       157 y~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         157 YRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             HHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999986543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.97  E-value=4.5e-09  Score=107.22  Aligned_cols=122  Identities=9%  Similarity=0.016  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      ..+++.-+....+..|+++.++.+||.+.. .+|.+++|+..++++++++|++..++.+++.++.+ ++++++|+..+++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~  145 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIEL  145 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence            344444455555678999999999996666 58999999999999999999999999999988888 9999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243          215 AVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ  258 (270)
Q Consensus       215 AL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~  258 (270)
                      ++..+|+++.++..+|.++.++|++++|...-+.+-..+|.|..
T Consensus       146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~  189 (694)
T PRK15179        146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN  189 (694)
T ss_pred             HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence            99999999999999999999999999999765553334555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.97  E-value=7e-09  Score=105.50  Aligned_cols=120  Identities=18%  Similarity=0.240  Sum_probs=108.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      |++++|...+.++|+++|.++.+|+.|| .+++.+||.++|..+.-.|-.++|+|.+.|..++.+..+ +|++++|.-+|
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~-~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy  230 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLG-EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCY  230 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHH-HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHH
Confidence            8999999999999999999999999999 555568999999999999999999999999999977766 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCC
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSY  254 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p  254 (270)
                      .+|++.+|.+....+..+.+|.++|+...|.+.-.. .+..||
T Consensus       231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            999999999999999999999999999888865333 444444

>PRK11906 transcriptional regulator; Provisional

Probab=98.96  E-value=6.7e-09  Score=100.16  Aligned_cols=120  Identities=13%  Similarity=0.045  Sum_probs=105.5

Q ss_pred             ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243          134 GNNSTDLYYQKMI---QADPRNPLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (270)
Q Consensus       134 d~~eA~~~y~kAL---eldP~n~~al~~lA~~l~~~--------~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~  202 (270)
                      +.+.|..+|.+++   +++|+.+.++..+|.+....        ..+..+|.++.++|+++||+|+.++..+|.+++. .
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence            5678899999999   99999999999999766543        2356789999999999999999999999988888 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCC
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY  254 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p  254 (270)
                      ++++.|...|++|+.++|+.+.+++..|.++...|+.+++...++..-.++|
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence            8899999999999999999999999999999999999999987766333333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=6.8e-09  Score=98.23  Aligned_cols=116  Identities=18%  Similarity=0.143  Sum_probs=99.1

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADP----RN-----------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP----~n-----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a  190 (270)
                      |..|.+.++|..|...|++++..=.    .+           ..++.|+|.++. ..++|.+|++.|.++|+++|+|..+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence            4456667899999999999887532    11           256778995555 6899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ++..|.++.. +++|+.|+..|++|++++|+|..+...+..+..+..++.+.+
T Consensus       294 LyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke  345 (397)
T KOG0543|consen  294 LYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE  345 (397)
T ss_pred             HHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888 999999999999999999999999999998888877766665

>PLN02789 farnesyltranstransferase

Probab=98.93  E-value=1.6e-08  Score=94.46  Aligned_cols=101  Identities=8%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~--~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      ++++++.+++++++.+|++..+|+..+.++. ..++.  ++++++++++|++||+|..+|...++++.. .+++++|+++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence            6899999999999999999999999995555 46763  788999999999999999999999987777 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      ++++|+.+|++..+|..++.++...
T Consensus       165 ~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        165 CHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999998876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=3.6e-09  Score=103.48  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             ChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALeldP--~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .+..-.++|-.|...+|  .++++...|| +||...|+|++|+.+|+.||..+|+|.-.|..||-.+.. -.+.++|+..
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA  486 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA  486 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence            56777888888999999  7999999999 555568999999999999999999999999999955554 8889999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |.+||++.|....+++++|..++.+|.++||.+.
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            9999999999999999999999999999999864

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.92  E-value=1.6e-08  Score=78.19  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVL  226 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~  226 (270)
                      +..++.+|..+.. .|++++|+++|+++++.+|++   ..+++.+|.+++. .+++++|+.+|++++..+|++   +.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            4567888867764 799999999999999999987   5788999988777 999999999999999999985   6789


Q ss_pred             HHHHHHHHHcCCcHHHHhccCC
Q 024243          227 ASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +.++.++...++.+++....+.
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHH
Confidence            9999999999999999876554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.91  E-value=1.6e-08  Score=104.93  Aligned_cols=124  Identities=12%  Similarity=0.025  Sum_probs=100.1

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      -++|+++.|+..|+++++.+|+++.++..++.++. ..|++++|+.+|++++.-+|.....+..+|.++.. +|++++|+
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~Ai  122 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQAL  122 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            44689999999999999999999755447774555 47999999999999993333444444444645555 89999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      ++|+++++.+|+++.++..++.++.+.++.+++....+.+....|.
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            9999999999999999999999999999999998876665555554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.89  E-value=6e-09  Score=74.18  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      .|++++|+++|+++++.+|++.+++..+|.+++. .|++++|..++++++..+|+++.++..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            5777777777777777777777777777766666 777777777777777777776666665554

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.86  E-value=4.1e-08  Score=82.44  Aligned_cols=109  Identities=13%  Similarity=0.102  Sum_probs=91.1

Q ss_pred             CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~  207 (270)
                      +.+..+...+.+.++.++.+  ..+++.+|..+. ..|++++|+..|++|+.+.|+.   +.++.++|.++.. .|++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e   90 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK   90 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence            45778888887777777776  677788995555 5799999999999999998763   4589999966666 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCcHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLW-------DADEDEEDE  243 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~-------~~Ge~eea~  243 (270)
                      |+.+|++++.++|.....+.+++.++.       .+|+.+++.
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence            999999999999999999999999999       666766553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.86  E-value=3.1e-09  Score=75.31  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=53.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG  188 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~  188 (270)
                      .|...|++++|+..|+++++.+|+++.+++.+|.+++ .+|++++|+++|+++++++|+++
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            3456789999999999999999999999999997777 58999999999999999999985

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.84  E-value=7.2e-08  Score=92.47  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .+.++.|+..|++..+.+|+   +...+++++.. .++-.+|+++++++|+.+|++.+.+...|..+.. .++++.|+.+
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~i  256 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEI  256 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence            47899999999999999986   44457766664 6899999999999999999999999999988887 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .++|++..|++...|+.++.+|..+|++++|-..+
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999999999999999997543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.9e-08  Score=90.02  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=87.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      +.|-.+++++.|...|++++++.|+|+.++..||.+++...|  .-.+|.+++++|+.+||+|..+++.||..+++ .|+
T Consensus       164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~  242 (287)
T COG4235         164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGD  242 (287)
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccc
Confidence            445678999999999999999999999999999999987554  56889999999999999999999999988888 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHH
Q 024243          205 ASRAESYFDQAVKAAPDDCY  224 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~  224 (270)
                      |.+|+..+++.++..|.+..
T Consensus       243 ~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         243 YAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999886543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.83  E-value=9.6e-08  Score=87.00  Aligned_cols=95  Identities=15%  Similarity=0.225  Sum_probs=82.2

Q ss_pred             cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCC
Q 024243          131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~  204 (270)
                      ..+++++|+..|+++++.+|++   +.+++.+|.+++ ..|++++|+..|+++++..|+   .+++++.+|.++.. +|+
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~  232 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGD  232 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCC
Confidence            3589999999999999999998   579999997777 589999999999999998887   57888888966666 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHH
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLA  227 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~  227 (270)
                      +++|+.+|+++++..|+...+..
T Consensus       233 ~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        233 TAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCHHHHH
Confidence            99999999999999998875543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.83  E-value=4.1e-09  Score=78.73  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          167 RGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|++++|+.+|+++++.+|.  +..+++.+|.++++ .|++++|+.++++ ++.++.+....+.+|.+++.+|++++|..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  56778889999998 9999999999999 88999999999999999999999999987


Q ss_pred             cc
Q 024243          245 VG  246 (270)
Q Consensus       245 ~~  246 (270)
                      .+
T Consensus        80 ~l   81 (84)
T PF12895_consen   80 AL   81 (84)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>TIGR00540 hemY_coli hemY protein

Probab=98.82  E-value=4.3e-08  Score=93.93  Aligned_cols=116  Identities=15%  Similarity=0.059  Sum_probs=96.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCC
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLS-NYARFLKEARGDLLKAEEYCARAILMSPNDG--NVLSMYGDLIWQSHKD  204 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~-~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~--~al~~lA~ll~~~~g~  204 (270)
                      .+...|++++|...++++++.+|++....+ .+-.......++..++.+.++++++.+|+|+  .++..+|+++++ +|+
T Consensus       272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~  350 (409)
T TIGR00540       272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGE  350 (409)
T ss_pred             HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-ccc
Confidence            445678999999999999999999985310 1111222224889999999999999999999  999999999998 999


Q ss_pred             HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          205 ASRAESYFD--QAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       205 ~e~A~~~~e--kAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +++|.++|+  ++++.+|++.. +..++.+++..|+.+++...
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence            999999999  68889996655 66999999999999999864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=4.1e-08  Score=88.22  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=93.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      -.++..+.+++|+.+|+..++-||.|..++-..-.++. .+|+--+|++.+..-++..++|.++|..++.+++. .++|+
T Consensus        94 m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~  171 (289)
T KOG3060|consen   94 MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFE  171 (289)
T ss_pred             HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHH
Confidence            34566789999999999999999998877765442444 57888899999999999999999999999988887 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDE  240 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~e  240 (270)
                      +|.-+++..+-++|-++..+..++.+++.+|-.+
T Consensus       172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999888887633

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.81  E-value=5.8e-09  Score=74.57  Aligned_cols=58  Identities=22%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSP  185 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP  185 (270)
                      ..|...+++++|+.+|+++++++|+++.+++++|.++.. .| ++++|+++|++||+++|
T Consensus        11 ~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   11 QIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            345567899999999999999999999999999977764 78 79999999999999998

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.80  E-value=1.3e-08  Score=72.33  Aligned_cols=65  Identities=18%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~  196 (270)
                      .+|++++|+..|+++++.+|++..++..+|.++.. .|++++|.+.+++++..+|+++.++..++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            35799999999999999999999999999988885 899999999999999999999988887774

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.79  E-value=5.9e-08  Score=96.15  Aligned_cols=114  Identities=5%  Similarity=-0.043  Sum_probs=95.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-------GDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~-------Gd~~eA~e~~ekAIel--dP~n~~al~~lA~ll~~~~g  203 (270)
                      ++..+|+.+|++|+++||+++.++..++.++....       .+..+|.+..++++.+  +|.++.++..+|.+... .|
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g  434 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG  434 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC
Confidence            45889999999999999999999998885544321       2356777778887775  78888999999955555 89


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++++|..+|++|++++| +..++..+|.++...|+.++|.+..+.
T Consensus       435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999 588999999999999999999976555

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.78  E-value=5e-08  Score=90.18  Aligned_cols=112  Identities=14%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      ...+...++.....+|....++..+|.++. .+|++++|++.|+++++++|++..++..++.++++ .|++++|+.++++
T Consensus        96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~  173 (355)
T cd05804          96 RDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMES  173 (355)
T ss_pred             chhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence            344455555555567777777777775555 47899999999999999999988888888888887 8999999999999


Q ss_pred             HHHhCCCCH----HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          215 AVKAAPDDC----YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       215 AL~~~P~~~----~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++..|.++    ..+..++.++...|+.+++....+.
T Consensus       174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  211 (355)
T cd05804         174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT  211 (355)
T ss_pred             hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            988876433    3456788888899998888765444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=5.7e-08  Score=70.01  Aligned_cols=64  Identities=23%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA  230 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la  230 (270)
                      ..+++++|+++++++++++|+++..+..+|.+++. +|++++|+..|+++++..|++..+....+
T Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            46777777777777777777777777777766665 77777777777777777777666655544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.77  E-value=4.2e-08  Score=82.87  Aligned_cols=88  Identities=17%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      +....+++.+|..+. ..|++++|+.+|+++++++|+.   ..++..+|.++.. .|++++|+.+|+++++.+|++...+
T Consensus        32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHH
Confidence            355777889996665 5799999999999999988764   4689999977776 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCc
Q 024243          227 ASHAHFLWDADED  239 (270)
Q Consensus       227 ~~la~il~~~Ge~  239 (270)
                      ..++.++...++.
T Consensus       110 ~~lg~~~~~~g~~  122 (172)
T PRK02603        110 NNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHHcCCh
Confidence            9999999998873

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=5.1e-08  Score=89.25  Aligned_cols=86  Identities=14%  Similarity=0.062  Sum_probs=78.8

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      +-|+-++. .++|.+|+..|.+||+++|+|+-.|-+.|-++.+ +|+++.|+...+.||.+||....+|.++|.+|..+|
T Consensus        86 ~eGN~~m~-~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   86 NEGNKLMK-NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHH-hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44555564 6999999999999999999999999999977776 999999999999999999999999999999999999


Q ss_pred             CcHHHHhc
Q 024243          238 EDEEDEQV  245 (270)
Q Consensus       238 e~eea~~~  245 (270)
                      ++++|.+.
T Consensus       164 k~~~A~~a  171 (304)
T KOG0553|consen  164 KYEEAIEA  171 (304)
T ss_pred             cHHHHHHH
Confidence            99999865

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.74  E-value=3.4e-07  Score=75.28  Aligned_cols=111  Identities=12%  Similarity=0.115  Sum_probs=94.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 024243          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~  205 (270)
                      .++...+...+++.++.+|+.   ..+...+|..++. .|++++|++.|++++...|++   ..+...+|.+++. .|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence            568889999999999999999   5677778877775 799999999999999988765   3578889988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      ++|+..++. +...+-.+.++..+|.++...|+.++|...
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999977 344455788999999999999999999854

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.74  E-value=1.1e-07  Score=87.87  Aligned_cols=116  Identities=17%  Similarity=0.054  Sum_probs=93.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      ..+++++|..+++++++.+|++..++.. +..+..   ..+....+.+.+......+|....++..++.++.. +|++++
T Consensus        55 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~  132 (355)
T cd05804          55 IAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AGQYDR  132 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cCCHHH
Confidence            3568999999999999999999977764 322221   12445555555555446777788888888877776 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+..++++++++|+++.++..++.+++..|+.+++....+.
T Consensus       133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~  173 (355)
T cd05804         133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES  173 (355)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999987665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=7.9e-08  Score=92.43  Aligned_cols=114  Identities=19%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ..+|++++|...|+++|..|..+..+++++| ..++.+|++++|+++|-+.-.+--++.++++.+|.++-. +.+..+|+
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqai  578 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAI  578 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHH
Confidence            4578999999999999999999999999999 666678999999999999888888999999999977766 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      ++|-++..+-|+++.++..++.+|-+.|+...+-++
T Consensus       579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~  614 (840)
T KOG2003|consen  579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC  614 (840)
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence            999999999999999999999999888887666543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.72  E-value=1.3e-07  Score=80.21  Aligned_cols=100  Identities=17%  Similarity=0.159  Sum_probs=86.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      +|++++|..+|+-+...||.|+.+|..||.++. .+++|++|+..|..|..++++|+...+..|.+++. +|+.+.|+.+
T Consensus        50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~~  127 (165)
T PRK15331         50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQC  127 (165)
T ss_pred             CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHHH
Confidence            479999999999999999999999999995554 68999999999999999999999999999977777 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      |+.+++ .|.+..+.......+-
T Consensus       128 f~~a~~-~~~~~~l~~~A~~~L~  149 (165)
T PRK15331        128 FELVNE-RTEDESLRAKALVYLE  149 (165)
T ss_pred             HHHHHh-CcchHHHHHHHHHHHH
Confidence            999999 5766655554444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=7.3e-08  Score=69.43  Aligned_cols=67  Identities=22%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .|..++++++|+.+++++++++|+++.++..+|.++. ..|++.+|++.|+++++.+|++..+....+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            4667889999999999999999999999999997777 489999999999999999999998887665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.68  E-value=1.6e-07  Score=94.59  Aligned_cols=113  Identities=12%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..++-++|..++.++-.++|..+..++..|..+. ++|++.+|.+.|..|+.+||+++..+..+|.++.+ .|+..-|..
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~  739 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEK  739 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHH
Confidence            3457789999999999999999999999995554 68999999999999999999999999999988888 898888887


Q ss_pred             --HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          211 --YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       211 --~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                        .+..|++++|.++.+|+.+|.++...|+.+.|.+.
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec  776 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC  776 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence              99999999999999999999999999999888864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.68  E-value=2e-07  Score=96.88  Aligned_cols=118  Identities=19%  Similarity=0.092  Sum_probs=100.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+..|+++++.+|+++.++..++..+. ..++.++|++.+++++..+|.+... ..++.++.. +++..
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~  186 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNY  186 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHH
Confidence            45667799999999999999999999999998875555 5799999999999999999987666 556655544 77787


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +|+..|+++++.+|++..++..+..++.+.|-...+.+..+
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            79999999999999999999999999999998888775533

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.68  E-value=2.7e-07  Score=79.22  Aligned_cols=98  Identities=18%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--h-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----
Q 024243          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--R-------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----  201 (270)
Q Consensus       135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~--~-------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~----  201 (270)
                      |+.|.+.++..+..||.+++.+++.|-+|.+.  .       .-+++|+.-|+.||.++|+..++++++|+.+...    
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999887752  1       2357788999999999999999999999876541    


Q ss_pred             ------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          202 ------HKDASRAESYFDQAVKAAPDDCYVLASHAHF  232 (270)
Q Consensus       202 ------~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i  232 (270)
                            ...|++|..+|++|++.+|++....-.+...
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                  1347899999999999999998877777655

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR00540 hemY_coli hemY protein

Probab=98.67  E-value=5.9e-07  Score=86.10  Aligned_cols=115  Identities=16%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      .|+++.|.+.+.++.+..|+....+...|.+.. .+|++++|.++++++.+..|++. .+...++.++.. .|++++|..
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHH
Confidence            589999999999999999988888777776666 47999999999999999999886 566667877777 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+++.++..|+++.++..++.++...|+++++....+.
T Consensus       175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~  212 (409)
T TIGR00540       175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN  212 (409)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999999988865443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.65  E-value=1.4e-07  Score=91.06  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=63.6

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (270)
Q Consensus       148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a---l~~lA~ll~~~~g~~e~A~~~~ekAL~~~  219 (270)
                      .+|+++.+++++|..++. .|+|++|+..|++||+++|++.++   |+++|.++.. +|++++|+.+|++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            689999999999977774 899999999999999999999965   9999955555 999999999999999983

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=3.3e-07  Score=82.51  Aligned_cols=114  Identities=16%  Similarity=0.086  Sum_probs=103.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      +..+-|..++.+.....|+...+....| .+++..|++++|+++|+..|+-||.|..++-..- .+...+|+.-+|+..+
T Consensus        66 ~~~~lAq~C~~~L~~~fp~S~RV~~lka-m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl-Ailka~GK~l~aIk~l  143 (289)
T KOG3060|consen   66 GRDDLAQKCINQLRDRFPGSKRVGKLKA-MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL-AILKAQGKNLEAIKEL  143 (289)
T ss_pred             cchHHHHHHHHHHHHhCCCChhHHHHHH-HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH-HHHHHcCCcHHHHHHH
Confidence            5778899999999999999999999999 6666789999999999999999999988887665 4455599999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ...++.+++|.++|..++.+|...|+++.|.-+.|+
T Consensus       144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            999999999999999999999999999999988877

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1e-07  Score=93.29  Aligned_cols=115  Identities=14%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHHcCC
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP----N---DGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP----~---n~~al~~lA~ll~~~~g~  204 (270)
                      .+++.-|..+|.+|+.+.|.+|.++..+|.+.+ ..+.|.+|..+|+++++.-+    .   =...+.++|.++-. ++.
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~  470 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNK  470 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-Hhh
Confidence            468889999999999999999999999995555 46889999999988883322    1   12347888855544 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++|+.+|+++|...|.++.++..+|.+|..+|+.+.|.+..-+
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence            99999999999999999999999999999999999998875433

>PRK11906 transcriptional regulator; Provisional

Probab=98.61  E-value=5.8e-07  Score=86.92  Aligned_cols=109  Identities=6%  Similarity=0.037  Sum_probs=90.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      .+..+|...-++|+++||+|+.++..+|..+.. .++++.|...|++|+.++|+.+.+|+.+|++++. .|+.++|.+.+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            478999999999999999999999999977764 6889999999999999999999999999988887 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH-HHHcCCcHHHH
Q 024243          213 DQAVKAAPDDCYVLASHAHF-LWDADEDEEDE  243 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~i-l~~~Ge~eea~  243 (270)
                      ++|++++|....+-...-++ .+...-.+++.
T Consensus       396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~  427 (458)
T PRK11906        396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNI  427 (458)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHcCCchhhhH
Confidence            99999999754443333333 33333344443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=4.8e-07  Score=79.26  Aligned_cols=111  Identities=19%  Similarity=0.202  Sum_probs=92.5

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~-----~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ..+|+|.+|..-|+.||+.-|..+     ..+.+.|.++. .++.++.|++.|.+||+++|.+..++...|.+|-. +.+
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek  183 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEK  183 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhh
Confidence            457899999999999999999874     45557775555 58999999999999999999999999999966665 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEED  242 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea  242 (270)
                      |++|+..|.+.++.+|..-.+....+++--...+..++
T Consensus       184 ~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk  221 (271)
T KOG4234|consen  184 YEEALEDYKKILESDPSRREAREAIARLPPKINERNEK  221 (271)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999998887777777665555444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.60  E-value=7.3e-08  Score=98.92  Aligned_cols=115  Identities=15%  Similarity=0.162  Sum_probs=105.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .+.+++|++.|.++|+.+|.|..+-+.+|.++.. .|++.+|...|.++.+.--++..+|.++|+++.. +|+|-.|++.
T Consensus       625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~-kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e-~~qy~~AIqm  702 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE-KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE-QGQYRLAIQM  702 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh-ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH-HHHHHHHHHH
Confidence            4688999999999999999999999999988885 7999999999999999888899999999999999 9999999999


Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          212 FDQAVKAAP--DDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       212 ~ekAL~~~P--~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+++..-  ++..++..+|.++++.|.+.++...+..
T Consensus       703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~  741 (1018)
T KOG2002|consen  703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK  741 (1018)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            999997653  6799999999999999999998866444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.59  E-value=5.3e-07  Score=82.15  Aligned_cols=96  Identities=17%  Similarity=0.135  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD---DCYV  225 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~---~~~~  225 (270)
                      +...++..|..+....|+|++|+..|++.|+..|++   +.+++.+|.+++. .|++++|+.+|+++++.+|+   .+++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            456666676555444699999999999999999988   5899999988888 99999999999999999887   4889


Q ss_pred             HHHHHHHHHHcCCcHHHHhccCC
Q 024243          226 LASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       226 ~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++.+|.++..+|+.+++....+.
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~  242 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQ  242 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999876444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.59  E-value=7.7e-07  Score=85.13  Aligned_cols=113  Identities=18%  Similarity=0.121  Sum_probs=96.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      +.+...|+.++|...++++++. |.++.....++ .+.  .++.++|++.+++.++.+|+|+..+..+|.++.. .++++
T Consensus       271 ~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~-~l~--~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~  345 (398)
T PRK10747        271 EHLIECDDHDTAQQIILDGLKR-QYDERLVLLIP-RLK--TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQ  345 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHh-hcc--CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            3445568999999999999995 55666655666 222  4999999999999999999999999999998888 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|..+|+++++..|++. .+..++.++...|+.+++...
T Consensus       346 ~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~  383 (398)
T PRK10747        346 EASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAM  383 (398)
T ss_pred             HHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999754 566899999999999999865

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.59  E-value=1e-06  Score=71.24  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD---DCYVLAS  228 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~---~~~~~~~  228 (270)
                      +++.+| ..+...|+.++|+.+|++|++.....   ..+++.+|..+.. +|++++|+..+++++...|+   +..+...
T Consensus         3 ~~~~~A-~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELA-WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            445555 22334555555666665555554332   3355555533333 55555665555555555555   4555555


Q ss_pred             HHHHHHHcCCcHHHH
Q 024243          229 HAHFLWDADEDEEDE  243 (270)
Q Consensus       229 la~il~~~Ge~eea~  243 (270)
                      ++.+++..|+.+++-
T Consensus        81 ~Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   81 LALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHHCCCHHHHH
Confidence            555555555555554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.58  E-value=2.1e-07  Score=93.41  Aligned_cols=112  Identities=13%  Similarity=0.080  Sum_probs=102.8

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      .+++|+++...++..++++|-....|+.+| +++...+++..|.++|.+++.++|++.++|.+++..+.+ +++-.+|..
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G-~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~  574 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGTWFGLG-CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFR  574 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhHHHhcc-HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHH
Confidence            368999999999999999999999999999 444468999999999999999999999999999977776 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      .+..|++.+-.+..+|.|+-.+..+.|+.+++..
T Consensus       575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence            9999999999999999999999999999998874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.55  E-value=1.1e-06  Score=84.03  Aligned_cols=117  Identities=11%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNY-ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~l-A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      .+.|+++.|..+|+++.+.+|++..+...+ + .++...|++++|.+.++++++.+|+++.++..++.++.. .|++++|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a-~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a  206 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRV-RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSL  206 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHH
Confidence            456788888888888888888886554333 4 333457888888888888888888888888888877666 7888888


Q ss_pred             HHHHHHHHH------------------------------------------hCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          209 ESYFDQAVK------------------------------------------AAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       209 ~~~~ekAL~------------------------------------------~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +..+.+..+                                          ..|+++.+...++..+...|+.+++...+
T Consensus       207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            755554442                                          23446667777788888888888888766


Q ss_pred             CC
Q 024243          247 EE  248 (270)
Q Consensus       247 e~  248 (270)
                      ++
T Consensus       287 ~~  288 (398)
T PRK10747        287 LD  288 (398)
T ss_pred             HH
Confidence            55

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.54  E-value=3.5e-07  Score=90.20  Aligned_cols=119  Identities=21%  Similarity=0.250  Sum_probs=95.7

Q ss_pred             cccccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC-----CCH---
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----NDG---  188 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP-----~n~---  188 (270)
                      -+.+|-..+++.+|+..|++|+.+        +|.-+.++.+||..++ ..|++++|..+|++|+++--     +.+   
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            346677789999999999999986        4556788899995555 68999999999999998862     333   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAA--------PDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~--------P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      ..+.+++ +.+..++++++|+.++++++++.        +.-+.++.++|.+|+.+|+++++++.
T Consensus       326 ~~l~~~~-~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~  389 (508)
T KOG1840|consen  326 AQLSELA-AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEEL  389 (508)
T ss_pred             HHHHHHH-HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            3455555 34455999999999999999873        23477899999999999999999864

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=4.9e-07  Score=88.11  Aligned_cols=102  Identities=16%  Similarity=0.157  Sum_probs=94.4

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      .+.|+|+.|+.+|.++|.++|.|...+.+...++. .+|+|++|.+--.+.++++|.=+..|..+|..++- +|+|++|+
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~   90 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAI   90 (539)
T ss_pred             cccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHH
Confidence            34679999999999999999999988888886666 58999999999999999999999999999966666 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      ..|.+.|+.+|++...+..++.++
T Consensus        91 ~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   91 LAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999988

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.53  E-value=2.7e-07  Score=86.33  Aligned_cols=106  Identities=18%  Similarity=0.094  Sum_probs=93.7

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      |+-|..+|.|++|+.+|.+++..+|.|+..+.+.|.+++ .+..|..|+.-|+.||.+|-.+..+|...+..-.. +|+.
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhH
Confidence            456788899999999999999999999999999996666 58999999999999999999999999999977777 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      .+|...++.+|++.|++-...-.++.+-
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~  209 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARIN  209 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence            9999999999999999766555555443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.53  E-value=4.7e-07  Score=76.80  Aligned_cols=96  Identities=13%  Similarity=-0.007  Sum_probs=86.5

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLA  227 (270)
Q Consensus       148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~  227 (270)
                      +.++.-..++.+|..++. .|++++|+.+|+-....||.|++.|..||- +++.+++|++|+..|..|..++++|+...+
T Consensus        32 is~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa-~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAA-VCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            455566778888977785 799999999999999999999999999995 444599999999999999999999999999


Q ss_pred             HHHHHHHHcCCcHHHHhc
Q 024243          228 SHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       228 ~la~il~~~Ge~eea~~~  245 (270)
                      ..|.++..+|+.+.|...
T Consensus       110 ~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             hHHHHHHHhCCHHHHHHH
Confidence            999999999999999865

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=1.1e-06  Score=81.61  Aligned_cols=118  Identities=10%  Similarity=0.058  Sum_probs=103.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n-----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~  201 (270)
                      ..|+...++++|+..-++..++.+..     +.+++.||..... ..++++|.+.+.+|++.||++..+-+.+|.+... 
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-  226 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSDVDRARELLKKALQADKKCVRASIILGRVELA-  226 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-
Confidence            35677789999999999999998876     4667777755553 6899999999999999999999999999998888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          202 HKDASRAESYFDQAVKAAPDD-CYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .|+|++|++.++.+++.||+. +.+...+..+|..+|+.++....+
T Consensus       227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999974 779999999999999999888543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=2.1e-07  Score=86.49  Aligned_cols=122  Identities=12%  Similarity=0.043  Sum_probs=84.6

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ-----  200 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~-----  200 (270)
                      .+.|+..+++++|.++|+.+++++|.|.+++..+|.-++. -++.+-|+.+|++.+++.-.+++.+.++|.+++-     
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence            3566777888888888888888888777666555533332 4566666666666666665555555555544322     


Q ss_pred             -------------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          201 -------------------------------SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       201 -------------------------------~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                                                     ..|++.-|..+|+-||..+|+|..++.+++.+-.+.|+.+++...+.-
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence                                           156777778888888888888888888888888888888888765433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=3.8e-07  Score=87.84  Aligned_cols=111  Identities=19%  Similarity=0.155  Sum_probs=102.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      +++..|..|-..++.+|..|+.++.+.|+..+ ..|++++|.++|+.|+..|....+++++.+ +.+..+|+.++|+++|
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f  547 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCF  547 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHH
Confidence            58899999999999999999999999998887 589999999999999999999999999999 5566699999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      -+.-.+--++..+++.++++|-.+++...+.+.
T Consensus       548 ~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  548 LKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            999999999999999999999999998888754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=6.8e-07  Score=85.06  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=84.1

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNP------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMY  194 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----~al~~l  194 (270)
                      -+.+.+.|+..|+++|.++|++.            ..+-.-|+.++ ..|+|.+|.++|..||.+||++.    ..|.+.
T Consensus       215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nr  293 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR  293 (486)
T ss_pred             cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence            34577888888888888888775            33444565566 36888888888888888888643    456677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      |.+..+ +|+..+|+...+.|++++|.-..++...|.++..+++++++-+
T Consensus       294 a~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  294 ALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             Hhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666 8888888888888888888888888888888888888777753

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.42  E-value=1.2e-06  Score=90.30  Aligned_cols=109  Identities=19%  Similarity=0.244  Sum_probs=83.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK--  203 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g--  203 (270)
                      +.|..+|+|++|..+|.++++.+|++ ...++.+|+.+. ..|++..|+.+|++.++.+|++.+++..+|-++.. .+  
T Consensus       315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~  392 (1018)
T KOG2002|consen  315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKK  392 (1018)
T ss_pred             HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhh
Confidence            44566788888888888888888888 777778886555 47888888888888888888888888888854443 32  


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          204 --DASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       204 --~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                        ..++|..++.++++..|.+..+|..++.++....
T Consensus       393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d  428 (1018)
T KOG2002|consen  393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD  428 (1018)
T ss_pred             hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence              5577888888888888888888888887765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.40  E-value=2.1e-06  Score=89.43  Aligned_cols=110  Identities=11%  Similarity=0.066  Sum_probs=93.2

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-------------------HH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------------------NV  190 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-------------------~a  190 (270)
                      ...+++++|+..++.+++.+|+...+++.+|. ++...+++.+|...  +++.+.+.+.                   .+
T Consensus        42 ~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A  118 (906)
T PRK14720         42 KSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA  118 (906)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence            34679999999999999999999999999996 55556777666555  5555555555                   99


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++.+| .+|.++|+.++|...|+++++.+|+|+.++.++|..|... +.++|..
T Consensus       119 l~~LA-~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720        119 LRTLA-EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             HHHHH-HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence            99999 5555599999999999999999999999999999999998 8888874

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.40  E-value=2.3e-06  Score=87.54  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=98.7

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      +..|++.|+..++..+.-.|-.++|.+...|..++.... .+|++.+|.-+|.+||+.+|.+....+..+.++.+ +|+.
T Consensus       180 ~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~~  257 (895)
T KOG2076|consen  180 GEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGDL  257 (895)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hChH
Confidence            456788999999999999999999999999999995554 68999999999999999999999999999955555 9999


Q ss_pred             HHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          206 SRAESYFDQAVKAAPDD-----CYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~-----~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+|...|.+++...|..     ....+..+..+...++.+.+.+.++.
T Consensus       258 ~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  258 KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999932     22233345566666666555554443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.40  E-value=1.1e-06  Score=88.57  Aligned_cols=95  Identities=16%  Similarity=0.176  Sum_probs=85.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE--YCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e--~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ..++..+...+|...|..++.+||+++.....+|.++.+ .|+-.-|+.  ++..|+++||.|.++|+.+|.++-. +|+
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd  769 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGD  769 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccc
Confidence            445667899999999999999999999999999977775 798888888  9999999999999999999966665 999


Q ss_pred             HHHHHHHHHHHHHhCCCCH
Q 024243          205 ASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~  223 (270)
                      .++|.++|+-|+++.+.+|
T Consensus       770 ~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  770 SKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hHHHHHHHHHHHhhccCCC
Confidence            9999999999999988765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.1e-06  Score=86.13  Aligned_cols=116  Identities=18%  Similarity=0.144  Sum_probs=104.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      +|--.+++++|..+|.|+..+||....+|..+|..+. ..+..++|+.+|.+|-++-|........+|.-+.+ .++++.
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHH
Confidence            4455589999999999999999999999999997776 47999999999999999999988888888844444 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |..+|.+|+.+.|+|+.++..+|.+.+..+++.+|...
T Consensus       399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~  436 (611)
T KOG1173|consen  399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKY  436 (611)
T ss_pred             HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHH
Confidence            99999999999999999999999999999999999853

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.37  E-value=3.5e-06  Score=83.65  Aligned_cols=88  Identities=13%  Similarity=0.036  Sum_probs=74.8

Q ss_pred             ChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQA--DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALel--dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      +.+++....++++.+  +|.++.++..+|.... ..|++++|..++++|++++| +..+|..+|.++.. .|++++|++.
T Consensus       399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~  475 (517)
T PRK10153        399 QLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA  475 (517)
T ss_pred             HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            345666667776664  8888888888884444 57999999999999999999 58899999988877 9999999999


Q ss_pred             HHHHHHhCCCCHH
Q 024243          212 FDQAVKAAPDDCY  224 (270)
Q Consensus       212 ~ekAL~~~P~~~~  224 (270)
                      |++|+.++|.++.
T Consensus       476 ~~~A~~L~P~~pt  488 (517)
T PRK10153        476 YSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHhcCCCCch
Confidence            9999999998775

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.34  E-value=7.3e-07  Score=65.18  Aligned_cols=68  Identities=24%  Similarity=0.405  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-------PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (270)
Q Consensus       150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-------P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~  219 (270)
                      |+-..++.++|.++. .+|++++|+.+|++|+++.       |.-..++.++|.++.. +|++++|+.++++++++.
T Consensus         2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence            445678899997777 5899999999999999773       2235678899977776 999999999999999863

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=5.3e-06  Score=80.32  Aligned_cols=107  Identities=14%  Similarity=0.072  Sum_probs=95.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      +|.-..+++..|...++ .|++++|+..++..|...|+|+..+...+.+++. .++.++|.+.+++++..+|+.+....+
T Consensus       302 ~~~~~aa~YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~  379 (484)
T COG4783         302 KRGGLAAQYGRALQTYL-AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLN  379 (484)
T ss_pred             CccchHHHHHHHHHHHH-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHH
Confidence            46777888888877775 6999999999999999999999999999998888 999999999999999999999999999


Q ss_pred             HHHHHHHcCCcHHHHhccCCCCCCCCCCC
Q 024243          229 HAHFLWDADEDEEDEQVGEEPAPPSYNFQ  257 (270)
Q Consensus       229 la~il~~~Ge~eea~~~~e~~~~~~p~f~  257 (270)
                      +|..|.+.|+..++...+......+|++.
T Consensus       380 ~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         380 LAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            99999999999999988766555555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=1.2e-06  Score=81.71  Aligned_cols=114  Identities=10%  Similarity=0.012  Sum_probs=97.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|+..++...|+..|.+.++..|.+...+...|++.- ..+++++|.++|+.+++++|.|.++....|.-++- -++.+-
T Consensus       265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~  342 (478)
T KOG1129|consen  265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEM  342 (478)
T ss_pred             HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHH
Confidence            3445577788888888888888999998888995555 57999999999999999999999999888877777 899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      |+.+|++.|.+.-.+++.+.++|.+.+..+++|-.-
T Consensus       343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence            999999999999999999999999888888877654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=3.2e-06  Score=69.46  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      ..|++++|+..|++++...|+.   +.+...+|.++. ..|++++|+..++. +.-.+-.+.++..+|+++.. +|++++
T Consensus        60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~  136 (145)
T PF09976_consen   60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDE  136 (145)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHH
Confidence            4589999999999999998776   467788997777 48999999999966 45556677889999988888 999999


Q ss_pred             HHHHHHHHH
Q 024243          208 AESYFDQAV  216 (270)
Q Consensus       208 A~~~~ekAL  216 (270)
                      |+..|++||
T Consensus       137 A~~~y~~Al  145 (145)
T PF09976_consen  137 ARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhC
Confidence            999999985

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.30  E-value=2.8e-06  Score=83.85  Aligned_cols=117  Identities=16%  Similarity=0.192  Sum_probs=97.4

Q ss_pred             cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~a  190 (270)
                      .-|..+|++++|+..+++++++        .|.-...+..+|.++. .++++.+|+.+|++|+.+-        |.-+.+
T Consensus       207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~  285 (508)
T KOG1840|consen  207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT  285 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3456679999999999999999        7777788878995554 6899999999999999875        445678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKAA--------PDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~--------P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +.+||.+++. .|+|++|..++++|+++.        |+-...+.+++.++..+++++++...
T Consensus       286 l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l  347 (508)
T KOG1840|consen  286 LNNLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL  347 (508)
T ss_pred             HHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            9999977776 999999999999999873        33456777888899999999999854

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.6e-06  Score=81.18  Aligned_cols=99  Identities=18%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             cCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .+|++..|.+.|.++|.++|+|    +..+.+.|.+.. .+|+..+|+.-|+.|+.+||....++...|.++.. .++++
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le~~e  338 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LEKWE  338 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HHHHH
Confidence            4689999999999999999997    456677775665 58999999999999999999999999999988777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHF  232 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~i  232 (270)
                      .|+++|++|++..-+ +.....+..+
T Consensus       339 ~AV~d~~~a~q~~~s-~e~r~~l~~A  363 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKD-CEIRRTLREA  363 (486)
T ss_pred             HHHHHHHHHHhhccc-cchHHHHHHH
Confidence            999999999998775 4444444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.28  E-value=1.4e-06  Score=87.48  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=92.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHhhCCHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARF----------------------------LKEARGDLLKAEEYCAR  179 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~----------------------------l~~~~Gd~~eA~e~~ek  179 (270)
                      +|...|+..+|..+.++-++ .|.++..|..+|.+                            ++ ..++|++|.+++++
T Consensus       433 CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~  510 (777)
T KOG1128|consen  433 CYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLER  510 (777)
T ss_pred             HHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHH
Confidence            34444555566666666666 44444444444433                            33 35899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          180 AILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       180 AIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +++++|-....|+.++.+.++ .++++.|..+|.+++..+|++...|.+++..|...++..++--.
T Consensus       511 sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  511 SLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             HhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            999999999999999977787 99999999999999999999999999999999999998888743

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=6.3e-06  Score=78.78  Aligned_cols=100  Identities=15%  Similarity=0.233  Sum_probs=87.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~e  213 (270)
                      --++|.++|+++|+++|+...+...+| -++.+.|.+..++.++++++...| |...+..+|+++.. .+.+++|+.+|.
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~A-EL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A-~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIA-ELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRA-QNEPQKAMEYYY  495 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHH-HHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence            348999999999999999999999999 555578999999999999999888 56778899987776 899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHc
Q 024243          214 QAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       214 kAL~~~P~~~~~~~~la~il~~~  236 (270)
                      +||.++|++...+..+-..-...
T Consensus       496 ~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  496 KALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHhcCccchHHHHHHHHHHhcc
Confidence            99999999998888777654433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.26  E-value=2.9e-05  Score=62.76  Aligned_cols=88  Identities=13%  Similarity=0.111  Sum_probs=75.3

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHc
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSH  202 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~  202 (270)
                      |...|+.++|+.+|+++++.....   ..++..+|..+. ..|++++|+..+++++...|+   +..+...++.+++. .
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~   88 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-L   88 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-C
Confidence            345689999999999999986555   568888996666 589999999999999999898   88888888966666 9


Q ss_pred             CCHHHHHHHHHHHHHh
Q 024243          203 KDASRAESYFDQAVKA  218 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~  218 (270)
                      |+.++|+..+-.++.-
T Consensus        89 gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   89 GRPKEALEWLLEALAE  104 (120)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998863

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.25  E-value=5.1e-06  Score=82.69  Aligned_cols=113  Identities=12%  Similarity=0.009  Sum_probs=98.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      |+-++|..+.+.+++.|+.....|.-+| .+++...+|++|+++|+.|+.++|+|-.+|..++.+-.+ +++++-....-
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vCwHv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~tr  132 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVCWHVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLETR  132 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchhHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHHH
Confidence            5778999999999999999999999999 666667899999999999999999999999999955555 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      .+.++..|.+-..|..++..+...|++..+...++
T Consensus       133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~  167 (700)
T KOG1156|consen  133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE  167 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888876543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.24  E-value=2.2e-06  Score=80.25  Aligned_cols=94  Identities=18%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      +|.+..-+..+|..++ ..|++..|+..|..||+.||++..+++..|.+++. +|+-.-|+..+.++|++.|+..-+...
T Consensus        34 ~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   34 SPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHHHHHHH
Confidence            3445555556665555 35666666666666666666666666666655555 666666666666666666666666666


Q ss_pred             HHHHHHHcCCcHHHHh
Q 024243          229 HAHFLWDADEDEEDEQ  244 (270)
Q Consensus       229 la~il~~~Ge~eea~~  244 (270)
                      .|.++.++|+.++|+.
T Consensus       112 Rg~vllK~Gele~A~~  127 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEA  127 (504)
T ss_pred             hchhhhhcccHHHHHH
Confidence            6666666666666653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.23  E-value=4.8e-06  Score=82.90  Aligned_cols=110  Identities=15%  Similarity=0.098  Sum_probs=101.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      ++|.+.++..+..|+..|.+.+.+...|-.+. ..|+-++|.++++.++..|+...-.|..+| ++++..++|++|+.+|
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~g-l~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLG-LLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHH-HHHhhhhhHHHHHHHH
Confidence            58999999999999999999999999997776 479999999999999999999999999999 7777799999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..|+.+.|+|..++..++.+..++++++-..+
T Consensus        99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            99999999999999999999999998766553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.22  E-value=2.1e-06  Score=83.01  Aligned_cols=73  Identities=11%  Similarity=0.062  Sum_probs=63.2

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243          183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV---LASHAHFLWDADEDEEDEQVGEE-PAPPSYNF  256 (270)
Q Consensus       183 ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~---~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f  256 (270)
                      .+|+++++++++|..++. +|+|++|+..|++||+++|++..+   ++++|.+|..+|+.++|..+++. +...++.|
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f  146 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF  146 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence            589999999999988887 999999999999999999999854   99999999999999999977655 43334444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.21  E-value=1.1e-05  Score=84.34  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------------------CC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------------------PN  186 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------------------P~  186 (270)
                      .+|.+.|+.++|...|+++|++||+|+.++++||..+.+ . ++++|++++.+|++..                    |.
T Consensus       124 ~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~  201 (906)
T PRK14720        124 EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD  201 (906)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence            466677999999999999999999999999999966665 4 9999999999888764                    44


Q ss_pred             CHHHHHHHHH-------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          187 DGNVLSMYGD-------------------LIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       187 n~~al~~lA~-------------------ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      +.+.+..+-.                   -+|...+++++++.+++.+|+.+|+|..+...++.+|..
T Consensus       202 d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        202 DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence            4433211111                   134447789999999999999999999999999988863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.19  E-value=2.8e-05  Score=64.54  Aligned_cols=93  Identities=19%  Similarity=0.183  Sum_probs=75.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCC-
Q 024243          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQSHKD-  204 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~~g~-  204 (270)
                      .|+|++|++.|+.+....|..   ..+...++.+++. .+++++|+..+++.|+++|+++.   +++..|...+. +.. 
T Consensus        23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~~  100 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDEG  100 (142)
T ss_pred             hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-Hhhh
Confidence            579999999999999998876   4677788877774 79999999999999999997664   67777755555 444 


Q ss_pred             --------------HHHHHHHHHHHHHhCCCCHHHH
Q 024243          205 --------------ASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       205 --------------~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                                    ..+|...|++.|+..|++..+-
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence                          6789999999999999887653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6.5e-06  Score=73.70  Aligned_cols=90  Identities=19%  Similarity=0.135  Sum_probs=81.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .-|...+.|..|+..|.++|.++|..+.++.+.|.+++. ..+++.+.+-|++|++++||...+++.++....+ ...|.
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~   95 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYD   95 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hcccc
Confidence            344556799999999999999999999999999977765 7999999999999999999999999999977777 89999


Q ss_pred             HHHHHHHHHHHh
Q 024243          207 RAESYFDQAVKA  218 (270)
Q Consensus       207 ~A~~~~ekAL~~  218 (270)
                      .|+..+++|..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=9.8e-06  Score=77.04  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=76.1

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..++|.+|+....++|+++|+|..+++..|.++.. .++|+.|...|++|++++|+|..+...+..+.-+.....++...
T Consensus       269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34899999999999999999999999999988885 79999999999999999999999999999555553344445678


Q ss_pred             HHHHHHHhCC
Q 024243          211 YFDQAVKAAP  220 (270)
Q Consensus       211 ~~ekAL~~~P  220 (270)
                      .|.+++..-+
T Consensus       348 ~y~~mF~k~~  357 (397)
T KOG0543|consen  348 MYANMFAKLA  357 (397)
T ss_pred             HHHHHhhccc
Confidence            8888876654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.17  E-value=7.2e-06  Score=76.90  Aligned_cols=91  Identities=19%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .+++..|+..|..|++.||++..+++..|.++. ..|+-.-|+.-+.+.|++.|+...+....|.+++. +|++++|+..
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~D  128 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEAD  128 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHH
Confidence            478999999999999999999999999996666 58999999999999999999999999999988887 9999999999


Q ss_pred             HHHHHHhCCCCHH
Q 024243          212 FDQAVKAAPDDCY  224 (270)
Q Consensus       212 ~ekAL~~~P~~~~  224 (270)
                      |.++|+.+|++..
T Consensus       129 F~~vl~~~~s~~~  141 (504)
T KOG0624|consen  129 FDQVLQHEPSNGL  141 (504)
T ss_pred             HHHHHhcCCCcch
Confidence            9999999996543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.15  E-value=4e-06  Score=77.40  Aligned_cols=125  Identities=15%  Similarity=-0.000  Sum_probs=95.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      .|-..++++.|.+.++++-+.+.+.......-|.+.. ..|  ++.+|.-+|+...+..+.++..+..+|.+... +|++
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~  217 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHY  217 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCH
Confidence            3445689999999999999998887766666664444 345  69999999999888888999999999966666 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHhccCCCCCCCC
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADED-EEDEQVGEEPAPPSY  254 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~-eea~~~~e~~~~~~p  254 (270)
                      ++|...+++|++.+|+++.++.+++.+...+|+. +..+..+..+....|
T Consensus       218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999997 444444444443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.4e-05  Score=76.38  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------------------------------CHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG----------------------------------DLLK  172 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G----------------------------------d~~e  172 (270)
                      .+|.-+|++++|+..|+++..+||.+....-.||..+. ..|                                  ++..
T Consensus       240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r  318 (564)
T KOG1174|consen  240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER  318 (564)
T ss_pred             hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence            45556789999999999999999998877777773322 234                                  4456


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       173 A~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      |+.+-+|+|+.||++.+++...|.++.. +++.++|+-.|+.|..+.|-+-..|..+-..|...+...||.
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            7777777777777777777777766665 777777777777777777777777777777777777777775

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.13  E-value=5.4e-05  Score=68.09  Aligned_cols=113  Identities=19%  Similarity=0.113  Sum_probs=86.9

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC-
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLL---SNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHK-  203 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al---~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g-  203 (270)
                      .+|++++|+..|++++...|+.+.+.   +.+|.+++. .+++++|+..|++.|+.+|+++   .+++.+|.+.+. .+ 
T Consensus        44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~~  121 (243)
T PRK10866         44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LDD  121 (243)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cch
Confidence            35899999999999999999997665   788877774 8999999999999999999765   467777744322 21 


Q ss_pred             --------------C---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhc
Q 024243          204 --------------D---ASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       204 --------------~---~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~  245 (270)
                                    |   ..+|+..|++.++..|+...+-                 +..+.+|++.|.+..+...
T Consensus       122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r  197 (243)
T PRK10866        122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR  197 (243)
T ss_pred             hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence                          1   3478899999999999874432                 2336677888887766644

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.11  E-value=7.4e-06  Score=54.06  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .++..+|..+. ..|++++|++.|+++|+.+|+|+.+|..+|
T Consensus         2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            45667775555 367777777777777777777777777766

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.11  E-value=3.8e-06  Score=81.27  Aligned_cols=105  Identities=17%  Similarity=0.083  Sum_probs=93.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .++|+.|+..|.+||+++|+++.++.+.+.++. +.++|..|+.-+.+||+++|....+|+..|..+.. .+++.+|...
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~   94 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLD   94 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHH
Confidence            368999999999999999999999999984444 67999999999999999999999999999966666 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      |++...+.|+++.+...+..+-...-+
T Consensus        95 l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   95 LEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999998888776655444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.10  E-value=1.3e-05  Score=71.09  Aligned_cols=101  Identities=11%  Similarity=0.059  Sum_probs=88.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .+|-+.|-++-|..-|.+++.+.|+-+.+++.+|..+.+ .|+|+.|.+.|.-.+++||.+.-+..+.|..++- -|++.
T Consensus        73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~  150 (297)
T COG4785          73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYK  150 (297)
T ss_pred             chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchH
Confidence            466677788999999999999999999999999966664 7999999999999999999999999999966666 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                      -|.+.+.+-.+.+|+||.--..+
T Consensus       151 LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785         151 LAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             hhHHHHHHHHhcCCCChHHHHHH
Confidence            99999999999999998644433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.10  E-value=4.1e-05  Score=66.68  Aligned_cols=112  Identities=20%  Similarity=0.235  Sum_probs=82.7

Q ss_pred             cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc--
Q 024243          131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSH--  202 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~--  202 (270)
                      +.|++.+|+..|++++...|+.   +.+.+.+|.+++. .|++++|+..|++.|+..|+++   .+++.+|.+.+...  
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            4689999999999999999886   5788889977774 7999999999999999999765   57888886655422  


Q ss_pred             --------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHH
Q 024243          203 --------KDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDE  243 (270)
Q Consensus       203 --------g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~  243 (270)
                              ....+|+..|+..++..|+...+-                 +..|.+|++.|.+..|.
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~  161 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI  161 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence                    234589999999999999875543                 23366677777766665

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.09  E-value=3.2e-05  Score=77.45  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      +++.++|+.+++++|+..|+...+|..+|+++. ..++.+.|.+.|..-++.-|+.+..|..++.+--. .|+..+|..+
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~i  741 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARSI  741 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHHH
Confidence            478899999999999999999999999995555 57999999999999999999999999999976665 8899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++++.-.+|++...|......-.+.|+.+.++.
T Consensus       742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  742 LDRARLKNPKNALLWLESIRMELRAGNKEQAEL  774 (913)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999888874

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.09  E-value=3.6e-06  Score=52.95  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=14.8

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          177 CARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       177 ~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |++||+++|+|+.+|.+||.++.. .|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhh
Confidence            444555555555555555543333 4444444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.07  E-value=8.7e-05  Score=67.46  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=65.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCH
Q 024243          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~~  205 (270)
                      .|+|..|...|++.++..|+.   +.+++-||..++. +|+|+.|...|.++++-.|+   -+++++.+|.++.. +++.
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~~~  231 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LGNT  231 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hcCH
Confidence            466777777777777777765   4566667766663 67777777777777777764   44667777755555 7777


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 024243          206 SRAESYFDQAVKAAPDDCYVLA  227 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~  227 (270)
                      ++|-..|+++++..|+...+..
T Consensus       232 d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         232 DEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHH
Confidence            7777777777777776655443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.07  E-value=6.8e-06  Score=85.05  Aligned_cols=118  Identities=16%  Similarity=0.061  Sum_probs=81.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------------------------HHhhCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL-----------------------------------KEARGDLL  171 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l-----------------------------------~~~~Gd~~  171 (270)
                      .+|....|...|..+|++|.++|+.+..++...+..+                                   +...+++.
T Consensus       500 ~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h  579 (1238)
T KOG1127|consen  500 QIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH  579 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence            4555555777788888888888877776655444321                                   11234556


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          172 KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       172 eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+..|+.|++.+|+|.+.|..++..|.. .|.+..|+..|.||..++|.+....+..+.+....|++.++-+.
T Consensus       580 ~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  580 GAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            67777777777777777777777766666 77777777777777777777777777777777777777776544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.04  E-value=2.9e-05  Score=74.63  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=76.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .++..+|+..+.++++.+|.+...+...|.++.. +++++.|+++.++|+++.|++...|+.||.+|.. +|+++.|+..
T Consensus       213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALla  290 (395)
T PF09295_consen  213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLA  290 (395)
T ss_pred             cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHH
Confidence            4678899999999999999999999999988885 7999999999999999999999999999988887 9999999987


Q ss_pred             HHHHH
Q 024243          212 FDQAV  216 (270)
Q Consensus       212 ~ekAL  216 (270)
                      +..+-
T Consensus       291 LNs~P  295 (395)
T PF09295_consen  291 LNSCP  295 (395)
T ss_pred             HhcCc
Confidence            77443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=1.5e-05  Score=73.67  Aligned_cols=93  Identities=20%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA-SRAESYF  212 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~-e~A~~~~  212 (270)
                      .+.+|..+|++..+..+.++..++.+|.+.. .+|+|++|++.+++|++.+|++++++.+++.+... .|+. +.+.+++
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHHH
Confidence            6889999999988888899999999996665 58999999999999999999999999999955555 7877 6788899


Q ss_pred             HHHHHhCCCCHHHHHH
Q 024243          213 DQAVKAAPDDCYVLAS  228 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~  228 (270)
                      .+....+|+|+.+...
T Consensus       260 ~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  260 SQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHCHHHTTTSHHHHHH
T ss_pred             HHHHHhCCCChHHHHH
Confidence            9999999999876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.99  E-value=1.7e-05  Score=52.32  Aligned_cols=43  Identities=16%  Similarity=0.127  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      ++++..+|.++.. +|++++|+.+|+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3678999988887 999999999999999999999999999875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.98  E-value=2.9e-05  Score=80.52  Aligned_cols=93  Identities=22%  Similarity=0.155  Sum_probs=81.6

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ--SHKDASRA  208 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~--~~g~~e~A  208 (270)
                      .+++|++|++..+++++.||+|..++.-+|.++....++.++|.+.|..|.+++|++.-+|-.+++++-.  ..-+++++
T Consensus        14 ~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~   93 (1238)
T KOG1127|consen   14 RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRA   93 (1238)
T ss_pred             hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHh
Confidence            3689999999999999999999999999998888643459999999999999999999999999966544  35678899


Q ss_pred             HHHHHHHHHhCCCCH
Q 024243          209 ESYFDQAVKAAPDDC  223 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~  223 (270)
                      -.+|++++.+.++..
T Consensus        94 ~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   94 AKCYQRAVLILENQS  108 (1238)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999999888654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.96  E-value=8.4e-06  Score=51.23  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q 024243          141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE  175 (270)
Q Consensus       141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e  175 (270)
                      +|+++|+++|+|+.+|++||.++. ..|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhcC
Confidence            489999999999999999997777 4899999974

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.95  E-value=9.5e-05  Score=73.45  Aligned_cols=91  Identities=25%  Similarity=0.261  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      ++++.+|..+ ...|++++|++++++||+..|..++.++..|.++-. .|++.+|..+++.|-.+|+.|-.+-...+..+
T Consensus       195 w~~~~lAqhy-d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  195 WTLYFLAQHY-DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            4556778444 458999999999999999999999999999988877 99999999999999999999999999999999


Q ss_pred             HHcCCcHHHHhcc
Q 024243          234 WDADEDEEDEQVG  246 (270)
Q Consensus       234 ~~~Ge~eea~~~~  246 (270)
                      .+.|+.++|++..
T Consensus       273 LRa~~~e~A~~~~  285 (517)
T PF12569_consen  273 LRAGRIEEAEKTA  285 (517)
T ss_pred             HHCCCHHHHHHHH
Confidence            9999999998654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.00012  Score=68.22  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=86.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..+.+.|+..+.+|++.||++..+-..+|++... .|+|++|++.++++++-||... +++..+..+| ...|+.++.+.
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~~~~~  270 (389)
T COG2956         193 SSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPAEGLN  270 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHHHHHH
Confidence            3689999999999999999999999999988875 8999999999999999999765 5777777444 45999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      .+.++++.++.....+...-.+....|.
T Consensus       271 fL~~~~~~~~g~~~~l~l~~lie~~~G~  298 (389)
T COG2956         271 FLRRAMETNTGADAELMLADLIELQEGI  298 (389)
T ss_pred             HHHHHHHccCCccHHHHHHHHHHHhhCh
Confidence            9999999999655444444444444444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.92  E-value=0.00017  Score=64.96  Aligned_cols=84  Identities=15%  Similarity=0.035  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL---SMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYV  225 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al---~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~  225 (270)
                      .+..++..|...+. .|+|++|++.|++++...|..+.+.   +.+|.++++ .+++++|+.+|++.++.+|++   +.+
T Consensus        31 ~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            45556677755664 7999999999999999999887665   788988888 999999999999999999976   567


Q ss_pred             HHHHHHHHHHcC
Q 024243          226 LASHAHFLWDAD  237 (270)
Q Consensus       226 ~~~la~il~~~G  237 (270)
                      ++.+|.++...+
T Consensus       109 ~Y~~g~~~~~~~  120 (243)
T PRK10866        109 LYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHhhhhcc
Confidence            788887765543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.90  E-value=0.00014  Score=72.92  Aligned_cols=42  Identities=14%  Similarity=0.096  Sum_probs=24.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      +++.++|+.+++.+|+..|+....|..+|.++-.+++.+.+.
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence            455555555555566666655555555666655555555554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.87  E-value=0.00029  Score=61.40  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=55.7

Q ss_pred             CChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 024243          133 HGNNSTDLYYQKMIQ-ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       133 gd~~eA~~~y~kALe-ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      |++.+|...|++++. +.-+++..+..+++..+. .+++..|...+++..+.+|.  .++.+..+|..+.. .|++++|+
T Consensus       103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Ae  180 (251)
T COG4700         103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAE  180 (251)
T ss_pred             hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHH
Confidence            455555555555543 344455555555555553 45555555555555555552  33444444544444 55555555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEED  242 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea  242 (270)
                      ..|+.++...| .+.....++..+..+|+.+++
T Consensus       181 safe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         181 SAFEVAISYYP-GPQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHH
Confidence            55555555555 344555555555555544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.86  E-value=0.00014  Score=69.08  Aligned_cols=113  Identities=22%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ..-|+.++|....+++++..-+.. ....++ .+  ..++..+=++..++.++..|+++..+..+|.+++. ++.+.+|.
T Consensus       274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~-~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~  348 (400)
T COG3071         274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP-RL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKAS  348 (400)
T ss_pred             HHcCChHHHHHHHHHHHHhccChh-HHHHHh-hc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHH
Confidence            345799999999999999976655 222333 33  35899999999999999999999999999998888 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+|+.|++..| +...+..+|.++-++|+..++++...+
T Consensus       349 ~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         349 EALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             HHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            99999999988 677889999999999999999976555

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.86  E-value=5.9e-05  Score=69.07  Aligned_cols=111  Identities=15%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .+..+.|..+|.+|++..+-...+|..+|..-+...++.+.|...|+++++..|.+...|..|.+.+.. .++.+.|..+
T Consensus        14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~l   92 (280)
T PF05843_consen   14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARAL   92 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHH
Confidence            345789999999999666667888888885556434666779999999999999999999999988877 8999999999


Q ss_pred             HHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHH
Q 024243          212 FDQAVKAAPDDC---YVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       212 ~ekAL~~~P~~~---~~~~~la~il~~~Ge~eea~  243 (270)
                      |++++..-|.+.   .+|..+..+-...|+.+...
T Consensus        93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~  127 (280)
T PF05843_consen   93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVR  127 (280)
T ss_dssp             HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999998877654   57777777777777655444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.85  E-value=0.0002  Score=71.14  Aligned_cols=114  Identities=18%  Similarity=0.100  Sum_probs=96.1

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |...|++++|+.+++++|+.+|+.++.+...|+++. +.|++.+|.+.++.|-++|+.|..+-...+..+++ .|++++|
T Consensus       204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A  281 (517)
T PF12569_consen  204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEA  281 (517)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHH
Confidence            445689999999999999999999999999998888 58999999999999999999999888888877777 9999999


Q ss_pred             HHHHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCcHHHHh
Q 024243          209 ESYFDQAVKAA--PDD-------CYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       209 ~~~~ekAL~~~--P~~-------~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +..+..-.+.+  |..       ..+...-|..|.+.|++..|-.
T Consensus       282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk  326 (517)
T PF12569_consen  282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK  326 (517)
T ss_pred             HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99998876654  211       3344556888889898887763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.83  E-value=0.00023  Score=58.85  Aligned_cols=87  Identities=15%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND----GNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n----~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      +.+.|++.|.++|.+-|.++.++++.|..+. .+|+.++|+.-+++|+++--.-    -.++...| ++|+.+|+-++|.
T Consensus        58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg-~lyRl~g~dd~AR  135 (175)
T KOG4555|consen   58 DLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRG-LLYRLLGNDDAAR  135 (175)
T ss_pred             chHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH-HHHHHhCchHHHH
Confidence            6788888888888888888888888886665 4788888888888888876432    23455666 5566688888888


Q ss_pred             HHHHHHHHhCCCC
Q 024243          210 SYFDQAVKAAPDD  222 (270)
Q Consensus       210 ~~~ekAL~~~P~~  222 (270)
                      ..|+.|-++....
T Consensus       136 ~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  136 ADFEAAAQLGSKF  148 (175)
T ss_pred             HhHHHHHHhCCHH
Confidence            8888777665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.82  E-value=0.00038  Score=57.56  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=73.6

Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 024243          159 YARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD----DCYVLASHAHFLW  234 (270)
Q Consensus       159 lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~----~~~~~~~la~il~  234 (270)
                      -|..+.+ .|+.+.|++.|.+||.+-|.++.+|.+.|..+-. +|+.++|++.+++|+++.-+    -+.++...|.+|.
T Consensus        49 ~~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   49 KAIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            4545555 6999999999999999999999999999966555 99999999999999999654    3778889999999


Q ss_pred             HcCCcHHHHhc
Q 024243          235 DADEDEEDEQV  245 (270)
Q Consensus       235 ~~Ge~eea~~~  245 (270)
                      .+|+++.+...
T Consensus       127 l~g~dd~AR~D  137 (175)
T KOG4555|consen  127 LLGNDDAARAD  137 (175)
T ss_pred             HhCchHHHHHh
Confidence            99999888743

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.81  E-value=3.9e-05  Score=70.05  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=83.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHhCC--CC----HHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQAD--PRN----PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSP--ND----GNVLSM  193 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeld--P~n----~~al~~lA~~l~~~~-Gd~~eA~e~~ekAIeldP--~n----~~al~~  193 (270)
                      ..|... ++++|+.+|++++++.  -++    ..++..+|.++ +.. +++++|+++|++|+++..  +.    ..++..
T Consensus        83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~y-e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~  160 (282)
T PF14938_consen   83 NCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIY-EEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK  160 (282)
T ss_dssp             HHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence            334444 7888888888888762  222    45666777444 345 788999999988888743  11    345667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCCC
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAPDD-------CYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQR  259 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~~  259 (270)
                      +|.++.. .++|++|+.+|+++....-++       ...++....++...|+...+....+......|.|...
T Consensus       161 ~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  161 AADLYAR-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHH-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            7766666 888999999998887753221       1344566667778888877777666655566777654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.81  E-value=0.00016  Score=65.71  Aligned_cols=91  Identities=24%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 024243          156 LSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLASH  229 (270)
Q Consensus       156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~l  229 (270)
                      .++.|.-++. .|+|..|+..|..-|+..|+.   +++++.||.++|. +|++++|..+|..+++..|++   ++.++.+
T Consensus       144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4455545554 699999999999999999975   5789999999998 999999999999999998875   7899999


Q ss_pred             HHHHHHcCCcHHHHhccCC
Q 024243          230 AHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       230 a~il~~~Ge~eea~~~~e~  248 (270)
                      |.++.++|+.++|...++.
T Consensus       222 g~~~~~l~~~d~A~atl~q  240 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQ  240 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHH
Confidence            9999999999999865433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.80  E-value=0.0011  Score=52.91  Aligned_cols=115  Identities=23%  Similarity=0.259  Sum_probs=74.8

Q ss_pred             ccccCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP---~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g  203 (270)
                      .|...++++.|...|++++..+|   .....+..++..+. ..+++++|+..+.+++...+. ....+..++..+.. .+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence            34556677777777777777666   23444444443333 357777777777777777777 57777777755555 67


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++++|..++.+++...|+....+..++..+...++.+++..
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE  257 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence            77777777777777777766666666666665554555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.77  E-value=0.00056  Score=59.53  Aligned_cols=114  Identities=16%  Similarity=0.106  Sum_probs=84.0

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHhCCCCHHHH----
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEAR----------GDLLKAEEYCARAILMSPNDGNVL----  191 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~----------Gd~~eA~e~~ekAIeldP~n~~al----  191 (270)
                      |...+++++|+..|++.++..|+++   .+++.+|.+.+...          ....+|...|+..|+..|+...+-    
T Consensus        52 ~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~  131 (203)
T PF13525_consen   52 YYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK  131 (203)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence            3456899999999999999999985   57777776654321          234689999999999999876542    


Q ss_pred             -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHH
Q 024243          192 -------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       192 -------------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~la~il~~~Ge~eea~  243 (270)
                                   +..|..+++ .+.+..|+..++.+++..|+.   ..++..+...+..+|..+.++
T Consensus       132 ~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  132 RLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence                         223433555 899999999999999999986   457888899999999988554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=8.9e-05  Score=45.29  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n  187 (270)
                      .+++.+|.+++ ..|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            45556664444 3566666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0001  Score=68.88  Aligned_cols=94  Identities=12%  Similarity=0.101  Sum_probs=79.2

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~  200 (270)
                      -|+.|...++|..|+..|.+.|+..-.+    +..+.|.|.+-+. .|+|..|+.-|.+|+.++|.+..+++.=|.++++
T Consensus        87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen   87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE  165 (390)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            4566677789999999999999985444    4566688866664 7999999999999999999999999999988888


Q ss_pred             HcCCHHHHHHHHHHHHHhCC
Q 024243          201 SHKDASRAESYFDQAVKAAP  220 (270)
Q Consensus       201 ~~g~~e~A~~~~ekAL~~~P  220 (270)
                       ++++++|+.+.+..+.++-
T Consensus       166 -Le~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  166 -LERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             -HHHHHHHHHHHhhhhhhhH
Confidence             9998888888887776654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=6.9e-05  Score=46.14  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPN  186 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~  186 (270)
                      .+|+++|.++. .+|++++|+++|++||+++|+
T Consensus         2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence            45666664444 356666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03077 Protein ECB2; Provisional

Probab=97.70  E-value=0.0004  Score=72.48  Aligned_cols=111  Identities=15%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      ..|.+++|..+|+.+.+..+-  +...+..+...+. ..|++++|.+++++. .+.| +..+|..+-..+.. .++.+.|
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~~~~e~~  676 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITP-DPAVWGALLNACRI-HRHVELG  676 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCChHHH
Confidence            346777788888777754322  2345555665555 468888888887764 3556 46666666655544 8888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +...+++++++|++...+..++++|...|+++++...
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v  713 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV  713 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence            8889999999999999999999999999999999854

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=0.00013  Score=44.57  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                      +.+++.+|.+++. +|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            4688999988888 999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.66  E-value=0.0012  Score=52.66  Aligned_cols=114  Identities=21%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYAR-FLKEARGDLLKAEEYCARAILMSP---NDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~-~l~~~~Gd~~eA~e~~ekAIeldP---~n~~al~~lA~ll~~~~g~~  205 (270)
                      ...+++..++..+.+++..++.+......... .+. ..+++++|..+|++++..+|   .....+..++..+.. .+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  183 (291)
T COG0457         106 EALGKYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRY  183 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCH
Confidence            34566888888999888888777555544553 344 47999999999999988777   345555555544444 7889


Q ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          206 SRAESYFDQAVKAAPD-DCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~-~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +.|+..+.++++..+. ....+..++..+...++.+.+...
T Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  224 (291)
T COG0457         184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY  224 (291)
T ss_pred             HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence            9999999999999988 688888888888888877777654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.64  E-value=0.00038  Score=63.73  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      .+|..|.+++.+ .+..+.|-..|.+|++..+-..++|..+|.+-+...++.+.|..+|+.+++..|.+..+|..+..++
T Consensus         2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            578888888876 5669999999999997666788999999977677567777799999999999999999999999999


Q ss_pred             HHcCCcHHHHhccCC
Q 024243          234 WDADEDEEDEQVGEE  248 (270)
Q Consensus       234 ~~~Ge~eea~~~~e~  248 (270)
                      ...++.+.+....|.
T Consensus        81 ~~~~d~~~aR~lfer   95 (280)
T PF05843_consen   81 IKLNDINNARALFER   95 (280)
T ss_dssp             HHTT-HHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHH
Confidence            999999888865444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00047  Score=62.34  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             ccccccccCCChHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 024243          124 RWGSWDPNNHGNNSTDLYYQKMIQA--------DPRN----------PLLLSNYARFLKEARGDLLKAEEYCARAILMSP  185 (270)
Q Consensus       124 ~gg~~Ye~~gd~~eA~~~y~kALel--------dP~n----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP  185 (270)
                      .|.++|.. ++|.+|...|+.|+..        .|.+          ...+.||.+++. ..|+|-++++.|...|..+|
T Consensus       184 ~GN~lfk~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  184 EGNRLFKL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             hhhhhhhh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCC
Confidence            45566654 6999999999988642        4544          356678887777 47999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024243          186 NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV  225 (270)
Q Consensus       186 ~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~  225 (270)
                      .|..+|+..|..... .=+.++|.+.|.++|+++|.-..+
T Consensus       262 ~nvKA~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             chHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999988776 677899999999999999965443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.64  E-value=4.2e-05  Score=55.71  Aligned_cols=57  Identities=21%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             cccccCCChHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA---D----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS  184 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel---d----P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld  184 (270)
                      ..|..+|++++|+.+|++++++   .    |.-..+++++|.++. ..|++++|++++++|+++.
T Consensus        13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhh
Confidence            4566789999999999999976   2    223577889996666 5899999999999999863

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.64  E-value=0.00043  Score=60.36  Aligned_cols=113  Identities=13%  Similarity=0.033  Sum_probs=97.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-MSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-ldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      =|.+.......+.+++.|....-+ .+|..+.+ .|++.+|+.+|++++. +...|+..+..+|...+. .+++..|...
T Consensus        70 ldP~R~~Rea~~~~~~ApTvqnr~-rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~t  146 (251)
T COG4700          70 LDPERHLREATEELAIAPTVQNRY-RLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQT  146 (251)
T ss_pred             cChhHHHHHHHHHHhhchhHHHHH-HHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHH
Confidence            366777777788888889876654 78888886 7999999999999986 456899999999999998 9999999999


Q ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          212 FDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       212 ~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++..+.+|.  .++....+++.|...|.+.+++.+.+.
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~  185 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV  185 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence            9999999985  688889999999999999988876555

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.62  E-value=0.001  Score=55.34  Aligned_cols=84  Identities=15%  Similarity=0.132  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVL  226 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~  226 (270)
                      +..++.-|...+. .|+|.+|++.|+......|.   -..+...++.+++. .+++++|+..+++-++++|.|   +.++
T Consensus        10 ~~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            5666777766664 79999999999999999985   44688899999998 999999999999999999987   5678


Q ss_pred             HHHHHHHHHcCC
Q 024243          227 ASHAHFLWDADE  238 (270)
Q Consensus       227 ~~la~il~~~Ge  238 (270)
                      +..|.+++.+.+
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            888888887754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00015  Score=44.56  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                      +.+|+++|.+++. ++++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence            4689999977777 999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.56  E-value=0.00015  Score=66.19  Aligned_cols=120  Identities=15%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             ccccccccCCChHHHHHHHHHHHHhCC-----CC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC--C----CHHHH
Q 024243          124 RWGSWDPNNHGNNSTDLYYQKMIQADP-----RN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSP--N----DGNVL  191 (270)
Q Consensus       124 ~gg~~Ye~~gd~~eA~~~y~kALeldP-----~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP--~----n~~al  191 (270)
                      .++..|...+++++|..+|.++.+..-     .. ...+...+ .++. ..++++|+++|++|+++.-  +    -+.++
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa-~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~  117 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAA-NCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCL  117 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            356677778999999999999977632     22 34444555 4443 4699999999999999852  2    24577


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          192 SMYGDLIWQSH-KDASRAESYFDQAVKAAPD--D----CYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       192 ~~lA~ll~~~~-g~~e~A~~~~ekAL~~~P~--~----~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ..+|.++.. . +++++|+.+|++|+++.-.  .    ...+..++.++...+++++|.+..
T Consensus       118 ~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~  178 (282)
T PF14938_consen  118 KELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY  178 (282)
T ss_dssp             HHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            888866665 6 8999999999999988432  1    456778899999999999998643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.54  E-value=0.00059  Score=69.70  Aligned_cols=76  Identities=16%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .|++++|.+++++. ...| +..+|..+...+.. .|+++.|...+++++++.|++...+..+.++|...|+.+++.+.
T Consensus       475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            46666666665543 1233 45566666655555 88999999999999999999988999999999999999999864

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.52  E-value=0.00019  Score=63.88  Aligned_cols=93  Identities=16%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      -+..++..| +++...|-+.-|.--|.+++.++|.-++++..+| +++...|+|+.|.+.|+-.++++|....+..+.|.
T Consensus        64 RA~l~fERG-vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG-~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          64 RAQLLFERG-VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHhc-chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHH-HHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            367778888 7888889999999999999999999999999888 66666999999999999999999999999999999


Q ss_pred             HHHHcCCcHHHHhcc
Q 024243          232 FLWDADEDEEDEQVG  246 (270)
Q Consensus       232 il~~~Ge~eea~~~~  246 (270)
                      .++.-|++.-|.++.
T Consensus       142 ~~YY~gR~~LAq~d~  156 (297)
T COG4785         142 ALYYGGRYKLAQDDL  156 (297)
T ss_pred             eeeecCchHhhHHHH
Confidence            999999999888654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.0015  Score=64.02  Aligned_cols=95  Identities=14%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA  215 (270)
                      ..-...|+.|+...+.+...|.++..+.. ..+.+.+-...|.+++.+.|++++.|..-|.-.+..+-+++.|.++|.++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            56688999999999999999999995555 46779999999999999999999999999977787566699999999999


Q ss_pred             HHhCCCCHHHHHHHHH
Q 024243          216 VKAAPDDCYVLASHAH  231 (270)
Q Consensus       216 L~~~P~~~~~~~~la~  231 (270)
                      |+.+|+.+..|..+-+
T Consensus       167 LR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhcCCCChHHHHHHHH
Confidence            9999999988876644

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.49  E-value=0.00024  Score=66.88  Aligned_cols=90  Identities=12%  Similarity=0.031  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      +-..|+-++ .+|.|++|+.+|.++|.++|.|+-.+.+.|..|++ ++.|..|+.....|+.++.....+|...+.+-..
T Consensus       100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            345676666 58999999999999999999999999999977777 9999999999999999999889999999999999


Q ss_pred             cCCcHHHHhccC
Q 024243          236 ADEDEEDEQVGE  247 (270)
Q Consensus       236 ~Ge~eea~~~~e  247 (270)
                      +|...||.+.-|
T Consensus       178 Lg~~~EAKkD~E  189 (536)
T KOG4648|consen  178 LGNNMEAKKDCE  189 (536)
T ss_pred             HhhHHHHHHhHH
Confidence            998888775433

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.47  E-value=0.0027  Score=68.15  Aligned_cols=108  Identities=15%  Similarity=0.032  Sum_probs=44.3

Q ss_pred             CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          133 HGNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       133 gd~~eA~~~y~kALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--dP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      |++++|..+|+++.+.+ +.+...|+.+...+. ..|++++|.++|++..+.  .| |...|..+...+.. .|++++|.
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k-~G~~eeA~  669 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGH-AGDLDKAF  669 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-CCCHHHHH
Confidence            44444444444444443 223333333333333 234444444444444433  12 23333333333333 44444444


Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          210 SYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       210 ~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      .+|+++.+.. +.+..++..+...|.+.|+.++|.
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            4444444332 123444444444444444444444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.44  E-value=0.0011  Score=71.18  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=103.8

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~g~~  205 (270)
                      .|+....+++|.++|+.+++..-....+|..||.+++. +.+-++|..++.+|++--|.  +.+.....|.+.|. .|+.
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDA 1616 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCc
Confidence            46667789999999999999999889999999988884 68889999999999999997  88899999988898 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +++..+|+-.|..+|...++|.-|...-...++.+..+..
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence            9999999999999999999999999888888887777653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.0026  Score=51.75  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             CChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRN----------------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n----------------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a  190 (270)
                      ++...++..+++++.+..++                      ..++..++..+. ..|++++|+.++++++.++|.+..+
T Consensus        20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~   98 (146)
T PF03704_consen   20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDEEA   98 (146)
T ss_dssp             T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHH
Confidence            45667777777777664222                      133344554444 4799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      +..+-.++.. +|+..+|+.+|+++.+.
T Consensus        99 ~~~lm~~~~~-~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   99 YRLLMRALAA-QGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence            9988877777 99999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.43  E-value=0.0015  Score=64.11  Aligned_cols=111  Identities=11%  Similarity=0.046  Sum_probs=87.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC---------------------C----
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---------------------D----  187 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~---------------------n----  187 (270)
                      .+..+-+++-++||+++|+++.++..+|.-   ...-..+|+++|++|++....                     +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            578889999999999999999999888721   134577888888887765411                     1    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      ..+...+|.++++ +|+.++|++.++..++.+|.  +-.+.+++...+..++.+.+.+..+.
T Consensus       259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            2234567866666 99999999999999998875  57799999999999999999986543

The molecular function of this protein is uncertain.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.00032  Score=61.76  Aligned_cols=107  Identities=16%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          158 NYARFLKEARGDLLKAEEYCARAILMSPNDG-----NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF  232 (270)
Q Consensus       158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-----~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i  232 (270)
                      .-|+-++ +.|+|++|..-|..||++-|...     -.|.+.|-+++. ++..+.|+....+|++++|....++...|.+
T Consensus       100 ~EGN~~F-~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen  100 KEGNELF-KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHhh-hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            3455566 57999999999999999999654     346666744444 9999999999999999999999999999999


Q ss_pred             HHHcCCcHHHHhccCCCCCCCCCC---CCC-CCCChhh
Q 024243          233 LWDADEDEEDEQVGEEPAPPSYNF---QQR-PPLPPHL  266 (270)
Q Consensus       233 l~~~Ge~eea~~~~e~~~~~~p~f---~~~-~~~~~~i  266 (270)
                      |-++..++++-+..+...-.+|.-   +++ ..+|++|
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            999998999886544433334432   223 5566644

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.39  E-value=0.00062  Score=58.71  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH----------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       170 ~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~----------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      |+.|.+.++.....||.|++++++.|..+.+ +          .-+++|+.-|+.||.++|+...+++++|++|...+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999999987665 3          235688999999999999999999999999987764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.38  E-value=0.0023  Score=62.89  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      .+.+.|...++...+..|+....++..|+... ..|+.++|++.|++++.....    ..-.++.+++++.. +.++++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence            48899999999999999999999999997776 589999999999999964432    23456788877776 8999999


Q ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCc
Q 024243          209 ESYFDQAVKAAPD-DCYVLASHAHFLWDADED  239 (270)
Q Consensus       209 ~~~~ekAL~~~P~-~~~~~~~la~il~~~Ge~  239 (270)
                      ..+|.+.++.+.- .....+..|.++...++.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999987653 677778888899999988

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03077 Protein ECB2; Provisional

Probab=97.31  E-value=0.0022  Score=66.96  Aligned_cols=115  Identities=12%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--dP~n~~al~~lA~ll~~~~g~~  205 (270)
                      .|.+.|++++|...|+++    +.+...|+.+...+. ..|+.++|+++|++.++.  .|+.......+. .+.. .|++
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~~~-~g~v  605 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLLC-ACSR-SGMV  605 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHhh-cChH
Confidence            355568889998888876    567778888886666 479999999999988874  465444433333 4555 8999


Q ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHhccCCC
Q 024243          206 SRAESYFDQAVKAAP--DDCYVLASHAHFLWDADEDEEDEQVGEEP  249 (270)
Q Consensus       206 e~A~~~~ekAL~~~P--~~~~~~~~la~il~~~Ge~eea~~~~e~~  249 (270)
                      ++|..+|+...+..+  .+...+..+..+|.+.|+.++|.+..++.
T Consensus       606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            999999998884432  25678888899999999999998776553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.31  E-value=0.00074  Score=62.88  Aligned_cols=67  Identities=21%  Similarity=0.334  Sum_probs=54.4

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      ..|+.++|..+|+.|++++|.+++++..+|.+.-. .++.-+|-.+|-+||.+.|.+..++.+.++..
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            36888888888888888888888888888855555 78888888888888888888888888877643

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.30  E-value=0.0058  Score=65.73  Aligned_cols=82  Identities=15%  Similarity=0.031  Sum_probs=34.1

Q ss_pred             CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      .|++++|..+|+++.+.... |...|+.+...+. ..|++++|.++|++..+..  | |..+|..+...+.+ .|++++|
T Consensus       485 ~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~-k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k-~G~~deA  561 (1060)
T PLN03218        485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA-RAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQ-SGAVDRA  561 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-CCCHHHH
Confidence            34455555555555443321 3344444443333 2344444444444443322  2 23333333333333 4444444


Q ss_pred             HHHHHHHH
Q 024243          209 ESYFDQAV  216 (270)
Q Consensus       209 ~~~~ekAL  216 (270)
                      .++|++..
T Consensus       562 ~~lf~eM~  569 (1060)
T PLN03218        562 FDVLAEMK  569 (1060)
T ss_pred             HHHHHHHH
Confidence            44444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.0026  Score=63.32  Aligned_cols=108  Identities=10%  Similarity=-0.008  Sum_probs=82.9

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      .+++|++|.....+.+...|++..++...-.++.+ .++|++|.++.++-....-.+. ..+..|.+.|+ ++..++|+.
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr-lnk~Dealk  100 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-LDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR-LNKLDEALK  100 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-hhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH-cccHHHHHH
Confidence            46899999999999999999999998877656664 6899988844433322222222 22678888888 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      .++   -.++.+...+...|.+++++|+++++-+
T Consensus       101 ~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald  131 (652)
T KOG2376|consen  101 TLK---GLDRLDDKLLELRAQVLYRLERYDEALD  131 (652)
T ss_pred             HHh---cccccchHHHHHHHHHHHHHhhHHHHHH
Confidence            998   5567677788888999999999888863

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.18  E-value=0.0047  Score=63.15  Aligned_cols=113  Identities=9%  Similarity=-0.042  Sum_probs=82.0

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e  206 (270)
                      |-+.|++++|...|+++.   +.+...|+.+...+.. .|++++|.++|++..+..  | |...+..+...+.. .|+++
T Consensus       269 y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~-~g~~~  342 (697)
T PLN03081        269 YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSR-LALLE  342 (697)
T ss_pred             HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-ccchH
Confidence            455688888888888763   4567778887766664 789999999888887643  4 45566666656666 78888


Q ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          207 RAESYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       207 ~A~~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +|..++..+++.. +.+..++..+...|.+.|+.++|....+
T Consensus       343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~  384 (697)
T PLN03081        343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD  384 (697)
T ss_pred             HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence            8888888887775 4466777777778888888777775533

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.18  E-value=0.0094  Score=54.01  Aligned_cols=97  Identities=19%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             ccccccc------CCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 024243          125 WGSWDPN------NHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLS  192 (270)
Q Consensus       125 gg~~Ye~------~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~  192 (270)
                      ...||.+      .|++++|+..|+++...+|..+   .+...++.+.+ ..+++++|+...++-|.+.|++++   +++
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            4556643      4899999999999999998875   66777886777 479999999999999999997664   344


Q ss_pred             HHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCC
Q 024243          193 MYGDLIWQSHKD-------ASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       193 ~lA~ll~~~~g~-------~e~A~~~~ekAL~~~P~~  222 (270)
                      ..+...+....+       ..+|...|+..|+..|+.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            444332221111       124555555566665554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0012  Score=59.37  Aligned_cols=79  Identities=15%  Similarity=0.069  Sum_probs=73.8

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ...|+.|+..|.+||.++|..+.++.+.|.++++ .++++.+.....+|++++|+.....+.++..+.....++++...+
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            5789999999999999999999999999966676 999999999999999999999999999999999999999998654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.13  E-value=0.01  Score=56.60  Aligned_cols=111  Identities=16%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      .|+|.+|++...++-+..+.-... +.+|.-.....||++.|-.+..+|-+.-++ .-.+....+.++.. .+++..|..
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~-~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLA-YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHH-HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchhHHH
Confidence            379999999999976665554444 455545555679999999999999998543 44567778877777 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      -+.++++..|.++.++.....+|+..|++.+-..
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~  208 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA  208 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999999999999999999888764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.12  E-value=0.0002  Score=69.60  Aligned_cols=81  Identities=12%  Similarity=-0.035  Sum_probs=74.1

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ..+|+.|+.+|.+||+++|+++..+.+.+..+.. .++|-.|+..+.+|++.+|.....++..|.+....+++.++-...
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l   95 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL   95 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence            5899999999999999999999999999955555 999999999999999999999999999999999999999988654


Q ss_pred             CC
Q 024243          247 EE  248 (270)
Q Consensus       247 e~  248 (270)
                      +.
T Consensus        96 ~~   97 (476)
T KOG0376|consen   96 EK   97 (476)
T ss_pred             HH
Confidence            44

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.12  E-value=0.005  Score=63.75  Aligned_cols=109  Identities=11%  Similarity=-0.000  Sum_probs=94.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      +++.+|.+...+.++..|+-..+...-|-.+. +.|+.++|..+++..-...++|...+..+-.++-. ++++++|..+|
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Y  100 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHH
Confidence            58999999999999999999999988886666 58999999977777777777888888888855555 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++++..+|. ...++.+=++|.+.+.+.+..+
T Consensus       101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen  101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 8888999999999888777664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.0025  Score=58.29  Aligned_cols=119  Identities=18%  Similarity=0.165  Sum_probs=90.4

Q ss_pred             CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHHcCCH
Q 024243          133 HGNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAIL----MS--PNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       133 gd~~eA~~~y~kALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe----ld--P~n~~al~~lA~ll~~~~g~~  205 (270)
                      ++|.-....|.++++.+ |.++.....++++-.+ .||.+-|..+|++.-+    ++  .++..++.+.+.++.- .+++
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~  268 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF  268 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence            46677788888888888 6678888888877775 6999999888884433    33  3455566677744444 8888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCC
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPS  253 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~  253 (270)
                      ..|...|.+++..||.++.+-.+.|.++..+|+..+|.+.++- .+..|
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            8899999999999999999889999999889988888877666 44333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.11  E-value=0.00015  Score=67.92  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=76.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      +|.+++|+..|..+|+++|..+.++...+.++. .+++...|+.-|..||++||+...-+-..+... +.+|++++|..+
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa~d  204 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAAHD  204 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHHHH
Confidence            478999999999999999999999999997777 489999999999999999998887776666333 348999999999


Q ss_pred             HHHHHHhCCC
Q 024243          212 FDQAVKAAPD  221 (270)
Q Consensus       212 ~ekAL~~~P~  221 (270)
                      |..+++++-+
T Consensus       205 l~~a~kld~d  214 (377)
T KOG1308|consen  205 LALACKLDYD  214 (377)
T ss_pred             HHHHHhcccc
Confidence            9999998764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.0057  Score=55.87  Aligned_cols=109  Identities=19%  Similarity=0.076  Sum_probs=86.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hh--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLK-EA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~-~~--~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      ...++-|+..++++.+++-+....  .||..+. ..  .+.+..|.-+|+..-+..|-.+..+...|.+... ++++++|
T Consensus       150 ~~r~d~A~~~lk~mq~ided~tLt--QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeA  226 (299)
T KOG3081|consen  150 MHRFDLAEKELKKMQQIDEDATLT--QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEA  226 (299)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHH
Confidence            368899999999999887765433  2332221 11  2468888889999988788888999999977776 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ...++.||..+++++.++.++-.+-...|.+.+.-
T Consensus       227 e~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  227 ESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            99999999999999999999999999999886655

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.05  E-value=0.0055  Score=63.89  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDL  197 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~-----~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~l  197 (270)
                      +...|++++|..+++++++..|...     .++..+|..+. ..|++++|..+++++++.....      ..++..+|.+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            4457899999999999998655432     34566775555 5899999999999999764421      2355677877


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          198 IWQSHKDASRAESYFDQAVKAAPD--------DCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       198 l~~~~g~~e~A~~~~ekAL~~~P~--------~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++. .|++++|..++++++++...        ....+..++.+++..|+.+++....+.
T Consensus       541 ~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  598 (903)
T PRK04841        541 LFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK  598 (903)
T ss_pred             HHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            777 99999999999999986321        234456778899999999999865433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0063  Score=56.69  Aligned_cols=68  Identities=10%  Similarity=0.036  Sum_probs=50.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~  200 (270)
                      ..+|+.|+.++.--.+.+|.+...+..+|.++|. ..+|..|..+|++.-.+.|.........|..+|+
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            3577888888888888888888888888877764 6788888888888877777766665555554444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.01  E-value=0.0018  Score=62.47  Aligned_cols=117  Identities=11%  Similarity=-0.030  Sum_probs=90.2

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh----CCCCHH--HHHH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM----SPNDGN--VLSM  193 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel----dP~n~~--al~~  193 (270)
                      |+-|-..|+|++|+.+-+.-|++....      -.++.++|+++.. .|+++.|+++|++++.+    ...-.+  ..+.
T Consensus       202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEAQscYS  280 (639)
T KOG1130|consen  202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS  280 (639)
T ss_pred             CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            345667799999999998888775432      3677889988875 79999999999886544    344444  4556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAP------DDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P------~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|+.+.. ..++++|+.|+++-|.+.-      -...+++.+|+.+-.+|+.+.|-.
T Consensus       281 LgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  281 LGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence            7777777 8999999999998776643      246789999999999999888763

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.0043  Score=58.91  Aligned_cols=109  Identities=12%  Similarity=-0.007  Sum_probs=68.3

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC--------------------------------------
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD--------------------------------------  169 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd--------------------------------------  169 (270)
                      +|...|+|++|...|+.+.+.+--+..++.++|-+.+ -.|.                                      
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh  144 (557)
T KOG3785|consen   66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFH  144 (557)
T ss_pred             HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4455678899998888887766556666666663222 2333                                      


Q ss_pred             ----------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243          170 ----------------------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLA  227 (270)
Q Consensus       170 ----------------------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~  227 (270)
                                            |.+|++.|.+.+.-+|+....-..+|.+++. +.-++-+.+.+.-.+...|+.+.+..
T Consensus       145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~pdStiA~N  223 (557)
T KOG3785|consen  145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQFPDSTIAKN  223 (557)
T ss_pred             HHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhCCCcHHHHH
Confidence                                  4556666666666666665555556644444 66666666666666666666666666


Q ss_pred             HHHHHHHHcCC
Q 024243          228 SHAHFLWDADE  238 (270)
Q Consensus       228 ~la~il~~~Ge  238 (270)
                      ..+..++++=+
T Consensus       224 Lkacn~fRl~n  234 (557)
T KOG3785|consen  224 LKACNLFRLIN  234 (557)
T ss_pred             HHHHHHhhhhc
Confidence            66666665533

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.98  E-value=0.0016  Score=39.69  Aligned_cols=30  Identities=27%  Similarity=0.445  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSP  185 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP  185 (270)
                      +|+.+|.++. .+|++++|+++|+++++++|
T Consensus         3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYE-QLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence            4455553333 35555555555555555555

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.0068  Score=57.22  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=90.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPND---GNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-dP~n---~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |+..+|-...++.|+..|.+..++..-=..++ ..|+.+.-...+++.|-. ||+-   ..+.-+||..+.+ .|-|++|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence            57788888899999999999888765544444 468888888899999887 7765   4455566644555 8999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +...+++++++|.|+.+.-..+.++...++..++.+.+
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM  232 (491)
T KOG2610|consen  195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM  232 (491)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence            99999999999999999999999999999988887654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.96  E-value=0.01  Score=58.21  Aligned_cols=109  Identities=19%  Similarity=0.285  Sum_probs=92.8

Q ss_pred             CChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      .|.+.+...|+..|++=|.-    +.+|..+|.+... +-+...|.+.+..||-+-|.+--.- .|-.+-.+ ++++++.
T Consensus       380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk-~YIelElq-L~efDRc  456 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFK-GYIELELQ-LREFDRC  456 (677)
T ss_pred             hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHH-HHHHHHHH-HhhHHHH
Confidence            68999999999999998875    6888889977774 7899999999999999999765433 44445555 8999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..+|++-|+..|.++.+|..+|.+-..+|+.+.+..
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa  492 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA  492 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999999999999999888773

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.96  E-value=0.0017  Score=39.67  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                      .+|+.+|.++.. +|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            578999977777 999999999999999999954

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.011  Score=59.13  Aligned_cols=108  Identities=12%  Similarity=0.041  Sum_probs=81.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---------------------------
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS---------------------------  184 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---------------------------  184 (270)
                      .+..++|+..++   -.++.+..++...|.++|. +++|++|...|+..++-+                           
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            457888888888   5677777788889988885 899999999999885443                           


Q ss_pred             ---CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-------HHHHHHHHHHHHHcCCcHHHHh
Q 024243          185 ---PN-DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA--------APDD-------CYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       185 ---P~-n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~--------~P~~-------~~~~~~la~il~~~Ge~eea~~  244 (270)
                         |. ..+.+++.|-++.. .|+|.+|++.+++|+++        +-++       ..+...++.++..+|+.+++-.
T Consensus       168 ~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence               22 45667888855555 99999999999999444        1111       2356677889999999888875

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.93  E-value=0.0014  Score=61.01  Aligned_cols=65  Identities=15%  Similarity=0.351  Sum_probs=59.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l  197 (270)
                      .|+.++|..+|+.|+.++|+++.++..+|.+.- ...+.-+|-++|-+|+.++|.|.+++.+.+..
T Consensus       129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            478899999999999999999999999996665 56999999999999999999999999888754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.86  E-value=0.011  Score=61.69  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--------CHHHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--------DGNVLSMY  194 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--------n~~al~~l  194 (270)
                      +...|++++|..+++++++.....      ..++..+|..++ ..|++++|.+++++++++-..        ...++..+
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            345689999999999999764321      245567786666 489999999999999986321        23345567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPD-----DCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~-----~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |.+++. .|++++|..++++++.....     ....+..++.++...|+.+++...
T Consensus       580 a~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  634 (903)
T PRK04841        580 AQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRY  634 (903)
T ss_pred             HHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            877777 89999999999999886432     355666788899999999888754

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.86  E-value=0.0063  Score=60.84  Aligned_cols=104  Identities=18%  Similarity=0.077  Sum_probs=89.3

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~-al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      ...+|+...|++++..|+-..|.... .+.++|+++.. -+-...|..++.+++.++-..+-.++.+|++++. +.+.++
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~  694 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISG  694 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHH
Confidence            34567889999999999999998643 35588977774 6888999999999999998888889999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      |++.|.+|++.+|+++.....+-.|-+
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999988877766655

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.013  Score=53.66  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=50.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESY  211 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A-~~~  211 (270)
                      ..+..|..+|+++-+..|-.+..++..|.+.. .+++|++|+..++.|+..++++++++.++-.+... .|.-.++ .++
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~  264 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN  264 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence            34555566666665555555556555553333 35666666666666666666666666666633333 4444333 345


Q ss_pred             HHHHHHhCCCCHHH
Q 024243          212 FDQAVKAAPDDCYV  225 (270)
Q Consensus       212 ~ekAL~~~P~~~~~  225 (270)
                      +.+....+|+++.+
T Consensus       265 l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhcCCcchHH
Confidence            55555556655543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.85  E-value=0.0096  Score=58.34  Aligned_cols=117  Identities=18%  Similarity=0.232  Sum_probs=96.1

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      .+.|-+++++++.|...+++||..+-.+...|..|+.+-. ...+...|...+.+|+.+-|.--..|+.|..+-- .+|+
T Consensus        79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE-~LgN  156 (677)
T KOG1915|consen   79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE-MLGN  156 (677)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH-Hhcc
Confidence            3456778899999999999999999999999999997766 4688899999999999999988888888884444 4888


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..-|.++|++=++-.| +.++|..+..+-.+..+.+.+..
T Consensus       157 i~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~  195 (677)
T KOG1915|consen  157 IAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARS  195 (677)
T ss_pred             cHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHH
Confidence            8888888888888888 56777777777777777666664

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.84  E-value=0.0019  Score=60.21  Aligned_cols=92  Identities=8%  Similarity=0.051  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          139 DLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       139 ~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      +-.|.++....|+++..|..++.... ..+-|.+-...|.+++++.|.|.+.|..-+..-+...++++.+...|.++++.
T Consensus        93 ~f~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~  171 (435)
T COG5191          93 IFELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM  171 (435)
T ss_pred             eEeeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence            34566677778999999999994444 67999999999999999999999999875544444499999999999999999


Q ss_pred             CCCCHHHHHHHHH
Q 024243          219 APDDCYVLASHAH  231 (270)
Q Consensus       219 ~P~~~~~~~~la~  231 (270)
                      +|+++.+|+.+-+
T Consensus       172 N~~~p~iw~eyfr  184 (435)
T COG5191         172 NSRSPRIWIEYFR  184 (435)
T ss_pred             CCCCchHHHHHHH
Confidence            9999998877644

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.012  Score=52.97  Aligned_cols=133  Identities=11%  Similarity=0.008  Sum_probs=87.9

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLS  192 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~------~al~  192 (270)
                      +..+|... +..+|+.++++++++..+-..      .+..+|..+-....++++|+.+|++|-+-...+.      ..+.
T Consensus        80 A~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   80 AANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            44555554 788888888888888655432      2335663333233789999999999987665322      2233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHcCCcHHHHhccCCCCCCCCCCCCC
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLA-------SHAHFLWDADEDEEDEQVGEEPAPPSYNFQQR  259 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~-------~la~il~~~Ge~eea~~~~e~~~~~~p~f~~~  259 (270)
                      --|....+ .++|.+|+..|++.....-++....+       ..+.+++...+.-.+...+++.+-+.|+|.+.
T Consensus       159 KvA~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  159 KVAQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            34433334 89999999999999988777655444       44555555455555556677778889999775

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.014  Score=53.92  Aligned_cols=110  Identities=19%  Similarity=0.150  Sum_probs=74.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHcCCHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD--LIWQSHKDASRAE  209 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~--ll~~~~g~~e~A~  209 (270)
                      .+++.+|...|..+++.+|++..+...|+.++.. .|+.+.|..++...=.-.. +.......+.  ++.+ .....+ .
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~q-aa~~~~-~  222 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQ-AAATPE-I  222 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHH-HhcCCC-H
Confidence            4688888999999999999998888888877775 6888888777665322111 1111111121  2222 222111 2


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      ..+++.+..+|+|..+.+.++..+...|+.++|-+.
T Consensus       223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~  258 (304)
T COG3118         223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH  258 (304)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            456677788899999999999999999998888764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0061  Score=55.29  Aligned_cols=101  Identities=12%  Similarity=0.038  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PN----------DGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~----------n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      ..++..-|+-++ +.|+|.+|...|+.||..-        |.          ....+.+|+.+++. .++|-++++....
T Consensus       178 v~~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~se  255 (329)
T KOG0545|consen  178 VPVLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSE  255 (329)
T ss_pred             hHHHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHH
Confidence            356677888888 4899999999999886431        33          44567888877776 9999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          215 AVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       215 AL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      .|..+|.+..+++..|.+....=+.++|.........++|+
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            99999999999999999998887877777654443334443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0089  Score=54.79  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=80.2

Q ss_pred             cCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          131 NNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      +-||.+.|..+++++-+.+      .++-.++.+.+ +++...+++..|...|.+.+..||.++.+..+.|.++.- .|+
T Consensus       224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a-~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~  301 (366)
T KOG2796|consen  224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA-FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGK  301 (366)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh-hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHH
Confidence            3468899999999554332      34456666777 555567899999999999999999999999999955555 899


Q ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 024243          205 ASRAESYFDQAVKAAPDD---CYVLASHAHFL  233 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~---~~~~~~la~il  233 (270)
                      ..+|+...++++++.|..   ..+.+++..+|
T Consensus       302 l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  302 LKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            999999999999999963   45666666655

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.015  Score=54.98  Aligned_cols=113  Identities=15%  Similarity=0.058  Sum_probs=87.9

Q ss_pred             ccCCChHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          130 PNNHGNNSTDLYYQKMIQA-DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALel-dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      .-+|+...-...+++.+-. ||+-   ..+...|+..+.+ +|-|++|++..++|+++|+.|..+....+.++-. .+++
T Consensus       148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~  225 (491)
T KOG2610|consen  148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRH  225 (491)
T ss_pred             HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchh
Confidence            3456777778888998888 7777   5666678855664 8999999999999999999999999999988877 9999


Q ss_pred             HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHh
Q 024243          206 SRAESYFDQAVKAAPD----DCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~----~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      .++++..++--..-..    ...-|...+.++..-++++.+.+
T Consensus       226 Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  226 KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            9999988765432221    23456667778877778877763

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.56  E-value=0.066  Score=50.02  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          139 DLYYQKMIQADPRNPLLLSNYARFLKEAR-----------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       139 ~~~y~kALeldP~n~~al~~lA~~l~~~~-----------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      ...|.+.++.+|.|..+|..|..+--...           .-.+.-+.+|++||+.+|++...+..|-.++.+ .-+.++
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~   83 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK   83 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence            46788999999999999999985432211           114677889999999999999999888877766 778889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      ...-+++++..+|++...|..+-.....
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999999999999988888766554

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.039  Score=50.50  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=93.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS-RAESY  211 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e-~A~~~  211 (270)
                      ..-..|.++-+.+|.++|.|-.+|...-.++.....+..+-++++...++-+|.|.++|...-.+.-. .|+.. +-++.
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELef  135 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELEF  135 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHHH
Confidence            35577888888889999999999977666666556789999999999999999999999888855444 89988 88999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ...++..+.++-.+|.....++..-+.++.+-
T Consensus       136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen  136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             HHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999998888876665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.45  E-value=0.0062  Score=36.50  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (270)
Q Consensus       190 al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~  221 (270)
                      +++.+|.++.. .|++++|+.+|+++++..|+
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            34445544443 45555555555555555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.43  E-value=0.029  Score=60.75  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=65.8

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ....+++|.++|++-++..-+-..+|..|+..+++ +++.+.|..++.+||+.-|.  |..+....|.+.++.|+.+..+
T Consensus      1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred             HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence            45677888888888888888788888888877777 78888888888888888887  7778888888888888887776


Q ss_pred             hccCC
Q 024243          244 QVGEE  248 (270)
Q Consensus       244 ~~~e~  248 (270)
                      ..-|.
T Consensus      1621 tlfEg 1625 (1710)
T KOG1070|consen 1621 TLFEG 1625 (1710)
T ss_pred             HHHHH
Confidence            55444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.025  Score=53.91  Aligned_cols=102  Identities=12%  Similarity=0.012  Sum_probs=74.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~-~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      +.||..|+.+++-.+..+.... ..-.-+|.+.+ +.|||++|...|.-+.+.+--+.+.+.++|-+.+- .|.|.+|..
T Consensus        35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~  112 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKS  112 (557)
T ss_pred             cccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHH
Confidence            4799999999998887765544 23233564555 68999999999999999888899999999966666 999999988


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADED  239 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~  239 (270)
                      +-.+|    |+++--...+-++..+.+++
T Consensus       113 ~~~ka----~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen  113 IAEKA----PKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHhhC----CCChHHHHHHHHHHHHhCcH
Confidence            77765    55544433333333444443

>PRK10941 hypothetical protein; Provisional

Probab=96.39  E-value=0.047  Score=50.09  Aligned_cols=67  Identities=16%  Similarity=0.058  Sum_probs=60.2

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      ..+++++|..+.++.+.++|+++.-+...|.++.+ ++.+..|...++..++..|+++.+......+.
T Consensus       193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            57999999999999999999999999999966666 99999999999999999999998877666554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.33  E-value=0.013  Score=58.03  Aligned_cols=88  Identities=22%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      ....|+..|.++++..|.....+.++|.++..+.  |+.-.|+.-|..|+++||....+++.|+..+.+ .+++.+|+.+
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~  467 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhh
Confidence            6778899999999999999999999997776432  677889999999999999999999999988888 9999999998


Q ss_pred             HHHHHHhCCCC
Q 024243          212 FDQAVKAAPDD  222 (270)
Q Consensus       212 ~ekAL~~~P~~  222 (270)
                      ...+...+|.+
T Consensus       468 ~~alq~~~Ptd  478 (758)
T KOG1310|consen  468 HWALQMSFPTD  478 (758)
T ss_pred             HHHHhhcCchh
Confidence            88887777743

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.041  Score=50.01  Aligned_cols=121  Identities=12%  Similarity=0.065  Sum_probs=86.3

Q ss_pred             CCccccccccCCChHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHHH
Q 024243          122 DGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLL------SNYARFLKEARGDLLKAEEYCARAILMS-----PNDGNV  190 (270)
Q Consensus       122 ~~~gg~~Ye~~gd~~eA~~~y~kALeldP~n~~al------~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~a  190 (270)
                      +..+...|...+++++|...+.+|.+-..+|...|      -..+ .+......+.+++.+|++|+.+.     |+-+..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaa-mLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA-MLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            44566677778999999999999997766664333      2333 44445689999999999999887     443333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHh
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~  244 (270)
                      -...|.-..+ .-+.++|+.+|++++.+--.+      ...+...+++|.+...+.|+..
T Consensus       113 aleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  113 ALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT  171 (308)
T ss_pred             HHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence            3334434555 789999999999999875433      2344556778888888888874

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.25  E-value=0.026  Score=43.14  Aligned_cols=50  Identities=16%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243          137 STDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (270)
Q Consensus       137 eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n  187 (270)
                      ..+..+++.++.+|+|..+.+.+|..+. ..|++++|++.+..+++.++++
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence            3467788888888888888888886666 4788888888888888888754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.23  E-value=0.039  Score=52.86  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             cccCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHh--hCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH--
Q 024243          129 DPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEA--RGDLLKAEEYCARA-ILMSPNDGNVLSMYGDLIW--  199 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALel----dP~n~~al~~lA~~l~~~--~Gd~~eA~e~~ekA-IeldP~n~~al~~lA~ll~--  199 (270)
                      |...++|+.-+.+.+.+-.+    -++.+.+.+.||.++.+.  .|+.++|.+.+..+ ...++.+++++-.+|.++-  
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~  230 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL  230 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence            34567999999999887776    566788888899666631  59999999999994 5555689999988887743  


Q ss_pred             -HH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          200 -QS-----HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       200 -~~-----~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                       ..     ....++|+.+|.++.+++| +.+.=.|++.++...|...+..
T Consensus       231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  231 FLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccch
Confidence             21     2347799999999999996 6778889999998888754443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.22  E-value=0.0014  Score=61.54  Aligned_cols=78  Identities=18%  Similarity=0.102  Sum_probs=71.0

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..|++++|++.|-+||+++|.....+...+.++.. +++...|+..+..|++++|+...-+-..+.+...+|+++++..
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            46999999999999999999999999999988887 9999999999999999999988888888888888888887764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.19  E-value=0.04  Score=50.01  Aligned_cols=82  Identities=13%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVL  226 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~  226 (270)
                      +..|++-|...+. .|++++|+..|++.....|..+   .++..++...++ .+++++|+.++++-+.++|.+   ..++
T Consensus        34 ~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          34 ASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            4445555545554 6999999999999999998654   678888888888 999999999999999999876   4566


Q ss_pred             HHHHHHHHHc
Q 024243          227 ASHAHFLWDA  236 (270)
Q Consensus       227 ~~la~il~~~  236 (270)
                      +..|..++..
T Consensus       112 YlkgLs~~~~  121 (254)
T COG4105         112 YLKGLSYFFQ  121 (254)
T ss_pred             HHHHHHHhcc
Confidence            6677766554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.19  E-value=0.051  Score=41.55  Aligned_cols=67  Identities=12%  Similarity=0.002  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcH
Q 024243          173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD--CYVLASHAHFLWDADEDE  240 (270)
Q Consensus       173 A~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~--~~~~~~la~il~~~Ge~e  240 (270)
                      .+..++++++.+|+|.++.+.+|..+.. .|++++|++.+..+++.+++.  ..+.-.+-.++-.+|..+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4567899999999999999999977777 999999999999999998754  677777777777777643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.14  E-value=0.098  Score=44.38  Aligned_cols=103  Identities=17%  Similarity=0.099  Sum_probs=77.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .++.+++...+..+--+.|+.+.+-..-| .++.++|+|.+|+.+++.+.+..|..+.+-..++.+++. +++.. =..+
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~-~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-Wr~~   99 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDG-WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-WRRY   99 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHH-HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-HHHH
Confidence            46888999999999999999999988888 555568999999999999999889999988889966665 77654 2234


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      -+.+++..+ ++.+......++-..+.
T Consensus       100 A~evle~~~-d~~a~~Lv~~Ll~~~~~  125 (160)
T PF09613_consen  100 ADEVLESGA-DPDARALVRALLARADL  125 (160)
T ss_pred             HHHHHhcCC-ChHHHHHHHHHHHhccc
Confidence            555666655 56666666555544433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.07  E-value=0.033  Score=38.58  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .++.+|...+ ..|+|++|.++++++|+++|+|.++.....
T Consensus         3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3455554455 367777777777777777777777665444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.06  E-value=0.035  Score=38.46  Aligned_cols=44  Identities=14%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      +.++.+|..+++ +|+|++|..+.+.+|++.|++.++......+-
T Consensus         2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            456778866777 99999999999999999999999887766554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.05  E-value=0.012  Score=36.90  Aligned_cols=25  Identities=40%  Similarity=0.639  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243          156 LSNYARFLKEARGDLLKAEEYCARAI  181 (270)
Q Consensus       156 l~~lA~~l~~~~Gd~~eA~e~~ekAI  181 (270)
                      +.++|.++. ..|++++|+++|+++|
T Consensus         2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYR-QQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            455664444 3566666666666643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.03  E-value=0.094  Score=42.49  Aligned_cols=77  Identities=17%  Similarity=0.102  Sum_probs=55.8

Q ss_pred             hCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243          167 RGDLLKAEEYCARAILMSPN----------------------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY  224 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~----------------------n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~  224 (270)
                      .++...+++.+++|+.+-..                      ...++..++..+.. .|++++|+.++++++..+|-+..
T Consensus        19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~   97 (146)
T PF03704_consen   19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALALDPYDEE   97 (146)
T ss_dssp             TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHH
Confidence            46777777777777766521                      12234445544555 89999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCcHHHHh
Q 024243          225 VLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       225 ~~~~la~il~~~Ge~eea~~  244 (270)
                      ++..+-.+|...|+..++..
T Consensus        98 ~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   98 AYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999988874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.93  E-value=0.018  Score=34.42  Aligned_cols=33  Identities=33%  Similarity=0.316  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n  187 (270)
                      ++++.+|.++.. .|++++|++.|+++++..|++
T Consensus         1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence            367889977764 799999999999999999974

>smart00028 TPR Tetratricopeptide repeats

Probab=95.93  E-value=0.013  Score=33.04  Aligned_cols=31  Identities=32%  Similarity=0.419  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPN  186 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~  186 (270)
                      ++..+|..+.. .+++++|+..|+++++++|+
T Consensus         3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            34455544442 45555555555555555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.91  E-value=0.016  Score=32.59  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                      .++..+|.+++. ++++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence            467889977777 999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.89  E-value=0.2  Score=44.40  Aligned_cols=102  Identities=19%  Similarity=0.213  Sum_probs=71.4

Q ss_pred             CCChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHhCCC------CHHHH
Q 024243          132 NHGNNSTDLYYQKMIQA----DPRN---PLLLSNYARFLKEARGD-------LLKAEEYCARAILMSPN------DGNVL  191 (270)
Q Consensus       132 ~gd~~eA~~~y~kALel----dP~n---~~al~~lA~~l~~~~Gd-------~~eA~e~~ekAIeldP~------n~~al  191 (270)
                      ...+++|++.|.-|+-.    ..++   +..+..+| ++++..++       +.+|.+.|++|++....      ...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            45889999999887753    2222   45555667 66666677       45678888888876632      24677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDD-CYVLASHAHFLWD  235 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~~  235 (270)
                      +.+|.+..+ .|++++|+.+|.+++...-.. +..+..+|+=.|+
T Consensus       169 YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  169 YLIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            788877777 999999999999999764432 3466666665554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.12  Score=51.87  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=86.7

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCC
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY------GDLIWQSHKD  204 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l------A~ll~~~~g~  204 (270)
                      ..++...+....+.++..||++..++.+++..+-.....+.-+....+.+.+..|+|.+++..+      +.+.-. +++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  157 (620)
T COG3914          79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGR  157 (620)
T ss_pred             ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hcc
Confidence            3456678888999999999999999999998777655566777778888999999999988777      644444 889


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      ..++..++++++++.|+++.+...+.......-.
T Consensus       158 ~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs  191 (620)
T COG3914         158 TAEAELALERAVDLLPKYPRVLGALMTARQEQCS  191 (620)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence            9999999999999999998887777666444333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.79  E-value=0.16  Score=42.15  Aligned_cols=82  Identities=16%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhh--CCHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          153 PLLLSNYARFLKEAR--GDLLKAEEYCARAIL-MSP-NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       153 ~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIe-ldP-~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      ....++||.++-...  .|..+.+.+++..++ -.| ...+.++.+|.-+++ .++|++++.|++..++..|++.++...
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            455668886665432  477889999999997 455 455788888866787 999999999999999999999998877


Q ss_pred             HHHHHHH
Q 024243          229 HAHFLWD  235 (270)
Q Consensus       229 la~il~~  235 (270)
                      .-.+.-+
T Consensus       111 k~~ied~  117 (149)
T KOG3364|consen  111 KETIEDK  117 (149)
T ss_pred             HHHHHHH
Confidence            6666544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.77  E-value=0.02  Score=35.88  Aligned_cols=28  Identities=29%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          190 VLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       190 al~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      +|.++|.++.. +|++++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            47889977777 99999999999996644

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.65  E-value=0.02  Score=51.51  Aligned_cols=63  Identities=11%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-VLSMYG  195 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-al~~lA  195 (270)
                      .+|.+.+.+.|.+++++.|.....|+.+| .+.++.|+++.|.+.|++.+++||.+.. +-..++
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g-~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa   71 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLG-EYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLA   71 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcc-hhhhhcccHHHHHHHHHHHHcCCcccccchhhhHH
Confidence            46889999999999999999999999999 6666789999999999999999996643 333444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.58  E-value=0.15  Score=49.18  Aligned_cols=116  Identities=14%  Similarity=0.067  Sum_probs=84.5

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHHcCC
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM---SPNDGN---VLSMYGDLIWQSHKD  204 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel---dP~n~~---al~~lA~ll~~~~g~  204 (270)
                      ..|+.+.|+.|-+++.+..|.-++++...-...+. .||++.|+++.+...+.   .++-.+   +...-+...-...-+
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            35788999999999999999999888766656664 69999999987655433   332221   111111112222567


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      ...|...-.+++++.|+....-...+..|++.|+..++...+|
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE  287 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE  287 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence            7889999999999999998888889999999999888876544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.50  E-value=0.2  Score=48.05  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=84.9

Q ss_pred             CCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243          132 NHGNNSTDLYYQK-MIQADPRNPLLLSNYARFLKEAR--------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (270)
Q Consensus       132 ~gd~~eA~~~y~k-ALeldP~n~~al~~lA~~l~~~~--------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~  202 (270)
                      .|+.++|+..+.. +....+.+++.+..+|+++...-        ...++|++.|+++.+++| +...-.|++.++.. .
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~-~  272 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLML-A  272 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHH-c
Confidence            4789999999999 55567788999999998775421        246899999999999996 55556688866665 5


Q ss_pred             CCHHHHHHHHHHHH--------Hh----CCCCHHHHHHHHHHHHHcCCcHHHHhccCC-CCCCCCCC
Q 024243          203 KDASRAESYFDQAV--------KA----APDDCYVLASHAHFLWDADEDEEDEQVGEE-PAPPSYNF  256 (270)
Q Consensus       203 g~~e~A~~~~ekAL--------~~----~P~~~~~~~~la~il~~~Ge~eea~~~~e~-~~~~~p~f  256 (270)
                      |+..+....+++..        +.    .-.+-.....+..+..-.++.+++.+..+. ....||.|
T Consensus       273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            54332221111111        11    224556667777788888999999887776 55556665

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.44  E-value=0.019  Score=51.66  Aligned_cols=56  Identities=18%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~  223 (270)
                      .+|.+-|.++|.+|+++-|+....|+.++. +-++.|+++.|...|++.++++|++.
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~-~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGE-YTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcch-hhhhcccHHHHHHHHHHHHcCCcccc
Confidence            699999999999999999999999999995 44449999999999999999999764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.40  E-value=0.067  Score=51.14  Aligned_cols=109  Identities=13%  Similarity=0.028  Sum_probs=82.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC----------HHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND----------GNVLSMYG  195 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n----------~~al~~lA  195 (270)
                      .+.+++++.+|++|++..-++.      .+...++.++. ...|+++|.-+..+|.++--+.          ..+++.++
T Consensus       135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma  213 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA  213 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence            4689999999999999854432      56667885554 5799999999999998876432          24567777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHH
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAA------PDDCYVLASHAHFLWDADEDEED  242 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~------P~~~~~~~~la~il~~~Ge~eea  242 (270)
                       +.++.+|..-+|.++.+.|.++.      +-+..-+.-+|.||...|+.+.+
T Consensus       214 -ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  214 -VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA  265 (518)
T ss_pred             -HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence             66677999999999999988763      23455667788899999886654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.05  Score=51.24  Aligned_cols=94  Identities=12%  Similarity=0.016  Sum_probs=74.4

Q ss_pred             HhCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243          147 QADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (270)
Q Consensus       147 eldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~  221 (270)
                      +-+|+. +.-+-.=|+.++. ..+|..|++.|.+.|+.+-.|+    -.|.+.|-+-+. .|+|-.|+....+|+.++|.
T Consensus        74 E~ep~E~Aen~KeeGN~~fK-~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~  151 (390)
T KOG0551|consen   74 EGEPHEQAENYKEEGNEYFK-EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPT  151 (390)
T ss_pred             cCChHHHHHHHHHHhHHHHH-hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcc
Confidence            334443 3334456777774 6899999999999999886544    457777756566 89999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCcHHH
Q 024243          222 DCYVLASHAHFLWDADEDEED  242 (270)
Q Consensus       222 ~~~~~~~la~il~~~Ge~eea  242 (270)
                      +..+++.-+.+++.+.+.+++
T Consensus       152 h~Ka~~R~Akc~~eLe~~~~a  172 (390)
T KOG0551|consen  152 HLKAYIRGAKCLLELERFAEA  172 (390)
T ss_pred             hhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999984444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.24  E-value=0.19  Score=49.71  Aligned_cols=98  Identities=14%  Similarity=0.047  Sum_probs=70.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCH--
Q 024243          131 NNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLSMYGDLIWQSHKDA--  205 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-dP~n~~al~~lA~ll~~~~g~~--  205 (270)
                      +.|+.++|++.++.+++.+|.  +..++.++..++.+ .+.|.++..++.|-=++ -|+.+...+.-|-+.++..++.  
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs  349 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS  349 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence            347889999999999988776  45677788878886 68999998888874322 2666777777775444433331  


Q ss_pred             -------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          206 -------------SRAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       206 -------------e~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                                   ..|++.+.+|++.||-.+..+..+
T Consensus       350 ~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~  386 (539)
T PF04184_consen  350 PEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM  386 (539)
T ss_pred             chhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence                         246788999999999777666554

The molecular function of this protein is uncertain.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.21  E-value=0.18  Score=51.33  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=97.1

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------------
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------------  187 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~----n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------------  187 (270)
                      -+.+|+.+++.+.|...|+++++.+=.    -+.+|.+.|..-. ...+++.|.++.++|... |.+             
T Consensus       393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl-rh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ  470 (835)
T KOG2047|consen  393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL-RHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQ  470 (835)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHH
Confidence            357999999999999999999987532    3788999995555 468999999999999864 433             


Q ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          188 ------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       188 ------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                            ..+|..|+++.-. .|-++.-...|++.+++---.|++-.++|.++.....++++=+.-|.
T Consensus       471 ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr  536 (835)
T KOG2047|consen  471 ARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER  536 (835)
T ss_pred             HHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence                  3467888865555 89999999999999999988999999999999776666666554343

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.19  E-value=0.51  Score=44.09  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=85.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH--KDASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~--g~~e~A~~~  211 (270)
                      -.+.-+.+|++||+.+|++...+..|-.... ...+.++..+.+++++..+|++...|..|-.......  -.+.+....
T Consensus        46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            3567789999999999999999988885555 4578899999999999999999999988885544322  246678888


Q ss_pred             HHHHHHhCCC------------------CHHHHHHHHHHHHHcCCcHHHHh
Q 024243          212 FDQAVKAAPD------------------DCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       212 ~ekAL~~~P~------------------~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      |.++++.-..                  -..++..+..++.+.|..+.|-.
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava  175 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA  175 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence            8887765221                  13466777888889999888763

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.17  E-value=0.49  Score=42.73  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 024243          134 GNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARG--------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---  201 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n-~~al~~lA~~l~~~~G--------d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---  201 (270)
                      |..+|..+|+++.+..-.. ..+...++..+.  .|        +..+|...|.+|-...  +..+...++.++..-   
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence            7788888888888773333 344556663333  23        3347888888887765  777888888555432   


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      ..++.+|..+|.+|.+...  ...++.++ +++..|
T Consensus       204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            2377888888888888766  77777777 666666

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.13  E-value=0.2  Score=52.38  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=78.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      +.|..++|..+++..-..-+++...+.-+-.++- ..+++++|..+|++++..+|+ .+.++.+=..+.+ .+.|.+-..
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQk  131 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQK  131 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHHH
Confidence            3467789998888888888888888777774544 589999999999999999998 7766666645555 777776666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      .--+..+..|++++.++....+++.
T Consensus       132 aa~~LyK~~pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen  132 AALQLYKNFPKRAYYFWSVISLILQ  156 (932)
T ss_pred             HHHHHHHhCCcccchHHHHHHHHHH
Confidence            6666667889988877776666554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.12  E-value=0.027  Score=55.46  Aligned_cols=106  Identities=12%  Similarity=0.018  Sum_probs=80.7

Q ss_pred             cCCChHHHHHHHHH-HHHhCCC--------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-h--------C--------
Q 024243          131 NNHGNNSTDLYYQK-MIQADPR--------NPLLLSNYARFLKEARGDLLKAEEYCARAIL-M--------S--------  184 (270)
Q Consensus       131 ~~gd~~eA~~~y~k-ALeldP~--------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-l--------d--------  184 (270)
                      ..|++.+|.+.+.. -+...|.        .-.+|+++| +++...+.|.-+..+|.+|++ .        .        
T Consensus       252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG-cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls  330 (696)
T KOG2471|consen  252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG-CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS  330 (696)
T ss_pred             HhcchHHHHHHHHhcccccccCccccchhhhheeecCcc-eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence            34777777777644 2344454        235678999 555567999999999999996 1        1        


Q ss_pred             -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          185 -PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       185 -P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                       -...+++++.|..++. .|+.-.|.++|.+++...-.+|..|..++.+.+..-+
T Consensus       331 ~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~  384 (696)
T KOG2471|consen  331 QNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ  384 (696)
T ss_pred             cccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence             2356788999955555 9999999999999999999999999999987766543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.11  E-value=0.26  Score=43.22  Aligned_cols=104  Identities=19%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHH
Q 024243          137 STDLYYQKMIQADPRNPL---LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       137 eA~~~y~kALeldP~n~~---al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~----al~~lA~ll~~~~g~~e~A~  209 (270)
                      +.....++....++.+..   +...+|....+ .+++++|+..++.++. .|.|..    +-.++|.+.++ ++++++|+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve-~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q-~~k~D~AL  146 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVE-ANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQ-QKKADAAL  146 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHH-hhhHHHHH
Confidence            667777777777766643   33456766665 6888888888888875 333332    33566767777 78888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..++......- ...+....|.++...|+.+++..
T Consensus       147 ~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~  180 (207)
T COG2976         147 KTLDTIKEESW-AAIVAELRGDILLAKGDKQEARA  180 (207)
T ss_pred             HHHhccccccH-HHHHHHHhhhHHHHcCchHHHHH
Confidence            77766543211 24456667888888888777764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.06  E-value=1.9  Score=36.65  Aligned_cols=73  Identities=21%  Similarity=0.098  Sum_probs=67.8

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADED  239 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~  239 (270)
                      ..++.+.+..++...-.+.|+.+++-..-++++.. .|++.+|+.+|+.+.+..|..+.+...++.+++.+++.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            35899999999999999999999999999988887 99999999999999999999999999999999999874

>PRK10941 hypothetical protein; Provisional

Probab=95.02  E-value=0.13  Score=47.08  Aligned_cols=66  Identities=11%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l  197 (270)
                      +.++++.|.++.+.++.++|+++.-+...| .++...|.+..|..-++..|+..|+++.+-.....+
T Consensus       193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRG-ll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        193 EEKQMELALRASEALLQFDPEDPYEIRDRG-LIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HcCcHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            458999999999999999999999999999 444468999999999999999999999887655533

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.98  E-value=0.059  Score=54.20  Aligned_cols=120  Identities=14%  Similarity=0.092  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG--NVLSMYGDLIWQSHKDASRAESYFD  213 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~--~al~~lA~ll~~~~g~~e~A~~~~e  213 (270)
                      +..-...-.+++.+|.+..++ +++.++.+.+|+..+|..++..|+..-|...  .++..+|.++.+ .|...+|--++.
T Consensus       196 ~~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILh  273 (886)
T KOG4507|consen  196 DDIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILH  273 (886)
T ss_pred             HHHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheee
Confidence            445566778889999988776 5566898889999999999999999887544  367788988888 999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCC
Q 024243          214 QAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQ  257 (270)
Q Consensus       214 kAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~  257 (270)
                      .|+...|....-++.++.++..+++++..-..-+..+...|.|.
T Consensus       274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence            99999998777799999999999987754433223344455553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.17  Score=47.46  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ..+|..|++++.--.+.+|.+...+..+|.++|. ..+|..|.++|++...+.|......+..+.-+++.+.+.++-
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            5789999999999999999999999999999998 899999999999999999998888888888888888777665

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.85  E-value=0.49  Score=46.89  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW  199 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~  199 (270)
                      +.+.+-...|.+++..+|+++.+|..-|...++..-+++.|..++.++|+.+|+++..|..+=.+-.
T Consensus       119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence            4477888999999999999999999999899986556999999999999999999999977765533

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.85  E-value=0.53  Score=42.47  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=73.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC-----
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---RGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHK-----  203 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~---~Gd~~eA~e~~ekAIeldP~n-~~al~~lA~ll~~~~g-----  203 (270)
                      .+..+|..+|+  ...+..++.+.++||..+..-   ..|+.+|..+|++|.+..-.. ..+.+.++.++..  +     
T Consensus        91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~  166 (292)
T COG0790          91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS--GLQALA  166 (292)
T ss_pred             ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc--Chhhhc
Confidence            46899999999  566778889999999666531   238999999999999865433 3447788855443  4     


Q ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          204 ---DASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       204 ---~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                         +...|..+|.++....  +..+++.++.+|..
T Consensus       167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence               3347999999998876  78888999977754

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.36  Score=46.62  Aligned_cols=103  Identities=9%  Similarity=0.100  Sum_probs=85.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD---AS  206 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~---~e  206 (270)
                      +.-.++-+.+...+++.+|+...+|+-...++.. .+  ++.+-+++|+++++.||.|-.+|...-.++-+....   ..
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence            3467888999999999999999999999966653 43  589999999999999999999997777665553444   56


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      +-+++..+++..++.|-.+|-....++..
T Consensus       167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             hHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            77889999999999999998888877763

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.79  E-value=0.2  Score=50.87  Aligned_cols=90  Identities=24%  Similarity=0.339  Sum_probs=75.6

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH--cCCH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQS--HKDA  205 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~--~g~~  205 (270)
                      +.-|=++...+.|++++++.=-.|....|||.+|-+ ..-+++|-+.|+|-|.+.  |+-.++|..|-......  -.+.
T Consensus       488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl  566 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL  566 (835)
T ss_pred             HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence            334788999999999999999999999999966664 688999999999999998  57778888877554432  3468


Q ss_pred             HHHHHHHHHHHHhCC
Q 024243          206 SRAESYFDQAVKAAP  220 (270)
Q Consensus       206 e~A~~~~ekAL~~~P  220 (270)
                      ++|..+|++||+..|
T Consensus       567 EraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  567 ERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            899999999999988

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.70  E-value=0.12  Score=50.96  Aligned_cols=93  Identities=15%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~----n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~  200 (270)
                      .++.+...|+.++|+..|++++.....    ....++.++.++. .+.+|++|.+++.+.++.+.-....|..++.+++.
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~  351 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL  351 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            345556679999999999998853222    2455667885555 58999999999999999887655555555556665


Q ss_pred             HcCCH-------HHHHHHHHHHHHh
Q 024243          201 SHKDA-------SRAESYFDQAVKA  218 (270)
Q Consensus       201 ~~g~~-------e~A~~~~ekAL~~  218 (270)
                      ..++.       ++|..+|.++-..
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHHHH
Confidence            58888       8888888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.56  E-value=0.67  Score=42.45  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=82.2

Q ss_pred             cCCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-CC-------------------
Q 024243          131 NNHGNNSTDLYYQKMIQADP----RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PN-------------------  186 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP----~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-P~-------------------  186 (270)
                      ..|.++.|..++.++...++    ..+.+....+..+.. .|+..+|+..++..++.. ..                   
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE  236 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence            45799999999999988763    257788889988885 799999999999888821 11                   


Q ss_pred             --------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          187 --------------DGNVLSMYGDLIWQSH------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       187 --------------n~~al~~lA~ll~~~~------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                                    -+.++..+|..... .      ++++++...|.+|++.+|+...+++.+|.++...=+
T Consensus       237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~  307 (352)
T PF02259_consen  237 VISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE  307 (352)
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence                          12344455544444 4      888999999999999999999999999998877644

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.46  E-value=0.14  Score=45.65  Aligned_cols=62  Identities=19%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       173 A~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      |+.+|.+|+.+.|+++..+..+|.+... .++.-.|+-+|-|++-..-..+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4556666666666666666666633333 5666666666666664443345566666665555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.37  E-value=0.37  Score=46.97  Aligned_cols=113  Identities=6%  Similarity=0.035  Sum_probs=82.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~al~~l  194 (270)
                      ++|--.++++.|+++|++.+.+.      .-.+...+.+|+.++. ..++.+|+.|+++-+.+-.      ....+++.+
T Consensus       243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL  321 (639)
T KOG1130|consen  243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSL  321 (639)
T ss_pred             hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            44445689999999999976552      2235667789988885 7999999999988776653      345577788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCcHH
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAA-----PD-DCYVLASHAHFLWDADEDEE  241 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~-----P~-~~~~~~~la~il~~~Ge~ee  241 (270)
                      |+.+-. .|..++|+.+.++.+++.     +. .-.+..++......+|..+-
T Consensus       322 gna~~a-lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  322 GNAFNA-LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHh-hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            855554 999999999888877652     22 34466777888888887544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.14  E-value=1  Score=39.62  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=58.2

Q ss_pred             hCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcH
Q 024243          167 RGDLLKAEEYCARAILMSP--NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD----DCYVLASHAHFLWDADEDE  240 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP--~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~----~~~~~~~la~il~~~Ge~e  240 (270)
                      +-.-++|...|.++-. .|  ++++..+.+| .+|. ..+.++|+.++.++|++...    |+.++..++.+++.+++++
T Consensus       119 r~~d~~A~~~fL~~E~-~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  119 RFGDQEALRRFLQLEG-TPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             ccCcHHHHHHHHHHcC-CCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3344566666655433 33  7899999999 5665 79999999999999998654    5999999999999999988


Q ss_pred             HHH
Q 024243          241 EDE  243 (270)
Q Consensus       241 ea~  243 (270)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            774

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.13  E-value=0.66  Score=39.01  Aligned_cols=70  Identities=17%  Similarity=0.103  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       168 Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      .+.++++.++...--+.|+.+++-..-++++.. .|++.+|+.+|+...+..+..+.....++.+++.+|+
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            455555555555555555555555555544444 5555555555555555555445555555555555554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.10  E-value=0.46  Score=47.73  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             CCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHh---hC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243          132 NHGNNSTDLYYQKMIQ-----ADPRNPLLLSNYARFLKEA---RG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (270)
Q Consensus       132 ~gd~~eA~~~y~kALe-----ldP~n~~al~~lA~~l~~~---~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~  202 (270)
                      ..|.+.|+.+|+.+.+     ..-.++.+.+.+|.++..-   .. |+.+|..+|.+|-+..  ++++.+.+|.++....
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence            4688999999988877     1122555667777555531   12 6777888888887644  4556666775444423


Q ss_pred             --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          203 --KDASRAESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       203 --g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                        .++.+|..+|..|.+.  .+..+++.++.+|.
T Consensus       340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence              3466788888877664  35666666766553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.99  E-value=0.1  Score=51.96  Aligned_cols=88  Identities=15%  Similarity=-0.047  Sum_probs=75.8

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      .+.+..|+..|.++++.-|.....+-++|.++.+.  .++.-.|+.....|++++|-...+++.++.++..++++.++.+
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            36678899999999999999999999999766542  3566688888899999999999999999999999999999998


Q ss_pred             ccCCCCCCCC
Q 024243          245 VGEEPAPPSY  254 (270)
Q Consensus       245 ~~e~~~~~~p  254 (270)
                      ....++..+|
T Consensus       467 ~~~alq~~~P  476 (758)
T KOG1310|consen  467 CHWALQMSFP  476 (758)
T ss_pred             hHHHHhhcCc
Confidence            7666777776

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.99  E-value=0.24  Score=49.68  Aligned_cols=114  Identities=15%  Similarity=0.004  Sum_probs=85.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNY--ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~l--A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .-.-++..|..-+..+|.++.++...  . .+....++...|......++..||++..+..+++..+-.....+.-+..+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~ls-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLS-ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHH-hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            33446666777777899998885443  4 33334688889999999999999999999999997766634444455556


Q ss_pred             HHHHHHhCCCCHHHHHHH------HHHHHHcCCcHHHHhccCC
Q 024243          212 FDQAVKAAPDDCYVLASH------AHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~l------a~il~~~Ge~eea~~~~e~  248 (270)
                      .+.+....|++..+...+      +..+..+++..+++..++.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  167 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER  167 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            666999999999988888      7777777877777765444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.95  E-value=0.14  Score=31.84  Aligned_cols=28  Identities=25%  Similarity=0.285  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILM  183 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIel  183 (270)
                      ++.++|.++.. +|++++|++++++++++
T Consensus         4 ~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            34445533332 45555555555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.92  E-value=0.16  Score=31.57  Aligned_cols=31  Identities=10%  Similarity=0.127  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (270)
Q Consensus       188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~  219 (270)
                      ..++.++|.++.. +|++++|+.++++++++.
T Consensus         2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRA-QGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hhhcchhhHHHHHHHHHH
Confidence            3578899977776 999999999999999873

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.86  E-value=0.093  Score=51.81  Aligned_cols=117  Identities=9%  Similarity=0.010  Sum_probs=91.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA-ILMSPN--------DGNVLSMYGDL  197 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA-IeldP~--------n~~al~~lA~l  197 (270)
                      ++|-+..+...+....+.+..+..+.+.++...+++.|. .|++.+|++++... |...|.        ....|.++|-+
T Consensus       214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~-~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI  292 (696)
T KOG2471|consen  214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA-HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI  292 (696)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH-hcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence            444455566666777777777778889999999988885 79999999988665 666665        23346788866


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          198 IWQSHKDASRAESYFDQAVKA------------------APDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       198 l~~~~g~~e~A~~~~ekAL~~------------------~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .++ ++.|+-+..+|.+|++.                  ..+...++|+.|..|...|+.-+|-++
T Consensus       293 h~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC  357 (696)
T KOG2471|consen  293 HYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC  357 (696)
T ss_pred             eee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence            677 99999999999999961                  224678999999999999998888765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.81  E-value=1.2  Score=39.15  Aligned_cols=86  Identities=12%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .+++++|+..++.++...-+.   ..+-.++|+++.+ +|.+++|+..+.....  ++ .+......|+++.. .|+-++
T Consensus       102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~-kg~k~~  177 (207)
T COG2976         102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE--ESWAAIVAELRGDILLA-KGDKQE  177 (207)
T ss_pred             hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH-cCchHH
Confidence            468888888888888664443   3445577877775 6888888887765443  22 22344566766666 888888


Q ss_pred             HHHHHHHHHHhCCC
Q 024243          208 AESYFDQAVKAAPD  221 (270)
Q Consensus       208 A~~~~ekAL~~~P~  221 (270)
                      |...|+++++.+++
T Consensus       178 Ar~ay~kAl~~~~s  191 (207)
T COG2976         178 ARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHccCC
Confidence            88888888888753

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.79  E-value=0.35  Score=38.60  Aligned_cols=86  Identities=14%  Similarity=0.105  Sum_probs=40.8

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhh---CC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEAR---GD-------LLKAEEYCARAILMSPNDGNVLSMYGDL  197 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~---al~~lA~~l~~~~---Gd-------~~eA~e~~ekAIeldP~n~~al~~lA~l  197 (270)
                      ..|+.-+|++..+.++..++++..   .+..-|.+++...   .|       .--|++.|.+++.+.|+.+..++.+|.-
T Consensus         8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen    8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence            345666677777776666666553   2222232221110   11       1235555555655555555555555533


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 024243          198 IWQSHKDASRAESYFDQAVK  217 (270)
Q Consensus       198 l~~~~g~~e~A~~~~ekAL~  217 (270)
                      +-. ...|++++...+++|.
T Consensus        88 l~s-~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   88 LGS-VKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hhh-HHHHHHHHHHHHHHhc
Confidence            222 3334444444444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.72  E-value=0.38  Score=44.09  Aligned_cols=68  Identities=19%  Similarity=0.054  Sum_probs=59.6

Q ss_pred             HhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          165 EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       165 ~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      ...++++.|....++.+.++|+++.-+...|.+|.+ ++.+.-|++.++..++..|+++.+......+.
T Consensus       192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            357899999999999999999999999999966666 99999999999999999999887766655544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.15  E-value=0.2  Score=48.02  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC------CCCHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN----------PLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n----------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld------P~n~~a  190 (270)
                      .+|-+.+|+++|..+..+|+++....          ..+++.++..+. .+|....|.++|+.|.++.      |-....
T Consensus       170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc  248 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARC  248 (518)
T ss_pred             HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence            34455689999999999999885332          355666774444 6899999999999997765      234445


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      +..+|+++-. .|+.+.|-.-|++|...
T Consensus       249 ~~~~aDIyR~-~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  249 LLCFADIYRS-RGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence            6677765555 99999999999988765

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.12  E-value=1.6  Score=43.92  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-P~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      ...|+++.....|++.+.---....+|..|++.+.. .|+.+-|...+.++.++- |.-+.+....|.+. ..+|+++.|
T Consensus       308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~-e~~~n~~~A  385 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLEARFE-ESNGNFDDA  385 (577)
T ss_pred             hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-HhhccHHHH
Confidence            345899999999999999989999999999988875 699999999998888876 66777777777444 448999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ..++++.....|....+-........+.|+.+.+.
T Consensus       386 ~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  386 KVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            99999999888998888888888888888876665

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.05  E-value=2.4  Score=38.62  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=80.0

Q ss_pred             cCCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHh----C---CCCH------
Q 024243          131 NNHGNNSTDLYYQKMIQAD----PRN----PLLLSNYARFLKEARG-DLLKAEEYCARAILM----S---PNDG------  188 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeld----P~n----~~al~~lA~~l~~~~G-d~~eA~e~~ekAIel----d---P~n~------  188 (270)
                      .+|+++.|..+|.|+-...    |+.    ...+++.|..++. .+ +++.|...+++|+++    .   ...+      
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3579999999999986654    433    3566677766664 68 999999999999988    2   1211      


Q ss_pred             -HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          189 -NVLSMYGDLIWQSHKD---ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       189 -~al~~lA~ll~~~~g~---~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                       .++..++.+++. .+.   +++|..+++.+-...|+.+.++...-.++...++.++.++.+
T Consensus        84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L  144 (278)
T PF08631_consen   84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL  144 (278)
T ss_pred             HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence             235556655555 444   447788888888888988888866666766667766666554

It is also involved in sporulation [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.90  E-value=1.5  Score=44.09  Aligned_cols=103  Identities=11%  Similarity=0.012  Sum_probs=72.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDASRA  208 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~~e~A  208 (270)
                      ++..|..+|.++-+....+  +.+.+|.++..-.  .|+.+|.++|.+|.+  -.+..+++.+|.++..-   ..+..+|
T Consensus       308 d~~~A~~~~~~aA~~g~~~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGNPD--AQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcCCch--HHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            7899999999988875544  4556774443222  357899999999987  56888999999444321   2378899


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHH
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDA-DEDEED  242 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~-Ge~eea  242 (270)
                      ..+|.++.+.+  ++.+.+.++.++..- +..+.+
T Consensus       384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~  416 (552)
T KOG1550|consen  384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA  416 (552)
T ss_pred             HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence            99999999988  466566665554333 444444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.88  E-value=1.7  Score=43.81  Aligned_cols=114  Identities=15%  Similarity=0.151  Sum_probs=88.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHH---HHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE---EYCARAILMSPN---DGNVLSMYGDLIWQ  200 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~---e~~ekAIeldP~---n~~al~~lA~ll~~  200 (270)
                      ++=+.+|+++.|...|++..+.-|+...+-...+.+.++ +|+.+.+.   +++...+.--.+   ..-.+..++.+.+.
T Consensus       374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            344667899999999999999889999888888877775 79998888   444444332222   22345677777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243          201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE  241 (270)
Q Consensus       201 ~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee  241 (270)
                      ..++.+.|...+.+++++.|++...+..+-++....+-..+
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e  493 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE  493 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence            78999999999999999999999999999988887774333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.84  E-value=0.45  Score=42.39  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (270)
Q Consensus       138 A~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~  200 (270)
                      |+.+|.+|+.+.|++...++.+| +++...++.-.|+-+|-|++...--.+.+..++..++-.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLA-vl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLA-VLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHH-HHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchh-hhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999 665568999999999999987765568888888855444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.83  E-value=0.55  Score=37.48  Aligned_cols=83  Identities=20%  Similarity=0.219  Sum_probs=58.6

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH---cCCH-------HHHHHHHHHHHHhCCCCHHHH
Q 024243          160 ARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQS---HKDA-------SRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       160 A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~---~g~~-------e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      |..++. +||+-+|+++.+..|...+++..   .+..-|.+++..   ..+.       --+++.|.+++.+.|+.+..+
T Consensus         3 A~~~~~-rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYFA-RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            334553 79999999999999999998774   444455554432   2222       258999999999999998888


Q ss_pred             HHHHHHHHHcCCcHHHH
Q 024243          227 ASHAHFLWDADEDEEDE  243 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~  243 (270)
                      +.+|.-+--.-.+++.-
T Consensus        82 ~~la~~l~s~~~Ykk~v   98 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAV   98 (111)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            88887644333344443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.81  E-value=0.3  Score=28.52  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=16.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          169 DLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       169 d~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      ++++|...|++++...|.+..+|..++
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            455566666666666666666665555

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=0.8  Score=42.14  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLL-KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~-eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      .+..+-..++.+.++.+|+|-.+|.-.- ++.+..|+.. .-+++++++|..|..|..+|...-+++.. -+.+++-+.+
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y  169 (318)
T KOG0530|consen   92 SDLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAY  169 (318)
T ss_pred             HHHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHH
Confidence            5788899999999999999999998776 5555689888 88999999999999999999887766543 4444444333


Q ss_pred             HHHHH
Q 024243          212 FDQAV  216 (270)
Q Consensus       212 ~ekAL  216 (270)
                      ..+.|
T Consensus       170 ~~~Ll  174 (318)
T KOG0530|consen  170 ADELL  174 (318)
T ss_pred             HHHHH
Confidence            33333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.77  E-value=2  Score=42.34  Aligned_cols=113  Identities=10%  Similarity=0.023  Sum_probs=81.5

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHH--HHHHHHhC------------CCCHHHHHHHHHH--
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEY--CARAILMS------------PNDGNVLSMYGDL--  197 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~--~ekAIeld------------P~n~~al~~lA~l--  197 (270)
                      .-++|+..++.+++-.|.+...-+..=  ++ ....|.+|...  +-+.+.+.            -.+.+.-..+++.  
T Consensus       395 ~dekalnLLk~il~ft~yD~ec~n~v~--~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy  471 (549)
T PF07079_consen  395 CDEKALNLLKLILQFTNYDIECENIVF--LF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY  471 (549)
T ss_pred             ccHHHHHHHHHHHHhccccHHHHHHHH--HH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence            458999999999999999986654332  22 23445555442  33333322            2456666666654  


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCC
Q 024243          198 IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSY  254 (270)
Q Consensus       198 l~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p  254 (270)
                      ++. +|+|.++..+-.=..+++| .+.++..+|.+++...+++||=+.   ++.+||
T Consensus       472 Lys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~---l~~LP~  523 (549)
T PF07079_consen  472 LYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY---LQKLPP  523 (549)
T ss_pred             HHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH---HHhCCC
Confidence            455 8999999999999999999 899999999999999999999877   444455

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.33  E-value=0.59  Score=42.40  Aligned_cols=118  Identities=11%  Similarity=0.030  Sum_probs=73.6

Q ss_pred             cccccccCCChHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH------HH
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQAD-----PRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV------LS  192 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeld-----P~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a------l~  192 (270)
                      +++-|...++++.|-..|-++-+..     .++ ...+...++ .+ +..+..+|+.++++||++.-+-...      +.
T Consensus        40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~  117 (288)
T KOG1586|consen   40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI  117 (288)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-Hh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence            3344445566666666666665442     122 223333332 33 3579999999999999998754443      34


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCcHHHHh
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCY------VLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~------~~~~la~il~~~Ge~eea~~  244 (270)
                      .+|.++-....++++|+.+|++|-+-...+..      .+...+..-...+++.++..
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~  175 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAID  175 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77876666568999999999999887653321      23333444455567777664

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.16  E-value=2.1  Score=41.51  Aligned_cols=107  Identities=16%  Similarity=0.037  Sum_probs=72.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESY  211 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A-~~~  211 (270)
                      -+...|...-.+++++.|+..-+...-++.|+. .|+..|+-.+++.+.+.+| +++++..|-  ..+ .|+.... ++-
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~eP-HP~ia~lY~--~ar-~gdta~dRlkR  317 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEP-HPDIALLYV--RAR-SGDTALDRLKR  317 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCC-ChHHHHHHH--Hhc-CCCcHHHHHHH
Confidence            467788888889999999988777777777774 7999999999999999888 555554333  223 3333221 223


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..+...+.||+.......+..-...|++..+..
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa  350 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARA  350 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence            334445567777777777776666666655553

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=2.5  Score=42.05  Aligned_cols=114  Identities=14%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHHcC
Q 024243          134 GNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PNDG----NVLSMYGDLIWQSHK  203 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---P~n~----~al~~lA~ll~~~~g  203 (270)
                      ++..++++++..+.-.|.+   +..+..+|..++....+++.|...+++|..+-   |+..    ++...++.++.+...
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            7889999999999887775   45666889888888899999999999998776   5543    456777877777555


Q ss_pred             CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          204 DASRAESYFDQAVKAAPDD----CYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~----~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      .+..|...+.+|+++.-..    +..++.++.++.-..++.-+-+.+.
T Consensus       104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            8899999999999997654    5567778888877777777765543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.94  E-value=0.77  Score=38.18  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             CCChHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQ-ADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       132 ~gd~~eA~~~y~kALe-ldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      ..+..+.+..++..++ .+|.. -..++.+|...+ +.++|++|..|++..|+.+|+|.++....-
T Consensus        48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4588999999999997 55654 466677776666 479999999999999999999999885544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.92  E-value=0.83  Score=45.75  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=60.2

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       143 ~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      ++.++.||.|...|+.|-+- ++. .-+++..+.|++.+...|..+.+|..+....+. .++|+..+.+|.++|.-
T Consensus        10 ~~rie~nP~di~sw~~lire-~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIRE-AQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHH-Hcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence            77788899999999888743 333 488999999999999999999999888877776 78899888888888854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.43  E-value=1.1  Score=47.17  Aligned_cols=89  Identities=24%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARA----------ILMSPN----------DGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekA----------IeldP~----------n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      -..+++||..|- ..+|.+.|+++|+++          |.-+|.          +...|.-.| .|++..|+.+.|+.+|
T Consensus       858 r~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWg-qYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  858 RNTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWG-QYLESVGEMDAALSFY  935 (1416)
T ss_pred             hhhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHH-HHHhcccchHHHHHHH
Confidence            356778896666 479999999999975          333343          334444445 4666689999999888


Q ss_pred             HHHHHh---------------------CCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          213 DQAVKA---------------------APDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       213 ekAL~~---------------------~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ..|-+.                     ...|..+.|.+|+.|-..|+..+|-
T Consensus       936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av  987 (1416)
T KOG3617|consen  936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAV  987 (1416)
T ss_pred             HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHH
Confidence            865432                     3456677888888888877777665

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.27  E-value=1.6  Score=36.80  Aligned_cols=86  Identities=12%  Similarity=-0.002  Sum_probs=67.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      ..+.+++...+..+--+.|+.+.+-..-| .++.+.|+|.+|+.+++...+-.+..+.....++.+++. ++|.+ =..+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg-~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~-Wr~~   99 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDG-WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE-WHVH   99 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHH-HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH-HHHH
Confidence            35889999999999999999999987777 555578999999999999999888889888888966666 77754 1233


Q ss_pred             HHHHHHhCC
Q 024243          212 FDQAVKAAP  220 (270)
Q Consensus       212 ~ekAL~~~P  220 (270)
                      -+.+++..+
T Consensus       100 A~~~le~~~  108 (153)
T TIGR02561       100 ADEVLARDA  108 (153)
T ss_pred             HHHHHHhCC
Confidence            444555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.17  E-value=3  Score=39.81  Aligned_cols=109  Identities=16%  Similarity=0.181  Sum_probs=77.1

Q ss_pred             ccCCChHHHHHHHHHHHHh--------------C------------CCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQA--------------D------------PRNP---LLLSNYARFLKEARGDLLKAEEYCARA  180 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALel--------------d------------P~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekA  180 (270)
                      ..+|+.+.|..++++||=.              +            +.|-   .+++.+...+. .+|-+..|.++|+-.
T Consensus        51 ~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~-~RG~~rTAlE~~KlL  129 (360)
T PF04910_consen   51 RQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG-RRGCWRTALEWCKLL  129 (360)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence            4467888888887777521              1            2232   34445554555 479999999999999


Q ss_pred             HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCc
Q 024243          181 ILMSPN-DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD-----DCYVLASHAHFLWDADED  239 (270)
Q Consensus       181 IeldP~-n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~-----~~~~~~~la~il~~~Ge~  239 (270)
                      +.+||. |+-....+-+.+..+.++++=-+..++........     -|...+..+.+++..++.
T Consensus       130 lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~  194 (360)
T PF04910_consen  130 LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE  194 (360)
T ss_pred             HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence            999998 88766666666666589998777777776552221     346778888999999887

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.09  E-value=1.5  Score=38.56  Aligned_cols=57  Identities=18%  Similarity=0.110  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      +++...+.+| .+|. ..|.++|+.++.+++++...    |++++..||.+++. +++++.|--
T Consensus       139 ~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AYi  199 (203)
T PF11207_consen  139 ETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAYI  199 (203)
T ss_pred             CCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhhh
Confidence            4688888999 5553 69999999999999999864    58999999977777 999998853

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.97  E-value=2.3  Score=32.26  Aligned_cols=53  Identities=17%  Similarity=0.146  Sum_probs=38.4

Q ss_pred             hCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024243          167 RGDLLKAEEYCARAILMSPN----D-----GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~----n-----~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P  220 (270)
                      .+||.+|.+.+.+....-..    .     ..++.++|.+... .|++++|+..++.|+++..
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence            58898887777766655431    1     3566777766666 8999999999999987754

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.78  E-value=0.88  Score=28.83  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHH--HHHHHHhCCCC
Q 024243          155 LLSNYARFLKEARGDLLKAEEY--CARAILMSPND  187 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~--~ekAIeldP~n  187 (270)
                      .+..+|..++ ..|++++|+++  |+-+..+++.|
T Consensus         3 ~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence            4555664444 35666666666  33666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=3.5  Score=39.98  Aligned_cols=103  Identities=11%  Similarity=0.110  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEA-----------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-  203 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~-----------~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-  203 (270)
                      .+++..=.+.++.+|+...+|+-.--++...           +.-+++-+.+.+.+|+.+|+...+|+...+++.++-- 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            5667777888899999988886533232221           1245667888999999999999999999998886322 


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      ++..-+.+.+++++.+|.+...|...-.++-....
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence            37889999999999999988877766666655443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.52  E-value=0.23  Score=46.65  Aligned_cols=66  Identities=9%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l  197 (270)
                      .+.+.+-...|.++++.+|.|.+.|...+.+-+...++++-+...|.++|..||+++.+|..+-.+
T Consensus       120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            356777778888999999999999987555666668999999999999999999999999777654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.47  E-value=0.87  Score=26.43  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=27.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      +++++|..+|++++...|.++.+|..+..+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            5688999999999999999999999888654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.28  E-value=2.5  Score=44.53  Aligned_cols=118  Identities=18%  Similarity=0.270  Sum_probs=75.5

Q ss_pred             cccccccCCChHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMI---------------------QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-  182 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kAL---------------------eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-  182 (270)
                      +|.+.++.|+++.|+.+|..|-                     .....|..+-+.+|+.+ +..|++.+|+.+|.||-. 
T Consensus       918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence            5667788899999999998763                     33466777788888554 468999999999887643 


Q ss_pred             -----hCC--CCHHHHHHHHHH-----------HHHHcC-CHHHHHHHHHH------HHH-----------------hCC
Q 024243          183 -----MSP--NDGNVLSMYGDL-----------IWQSHK-DASRAESYFDQ------AVK-----------------AAP  220 (270)
Q Consensus       183 -----ldP--~n~~al~~lA~l-----------l~~~~g-~~e~A~~~~ek------AL~-----------------~~P  220 (270)
                           +-.  +..+-+.++|.+           ||+..| ++.+|+.+|.|      ||+                 ++|
T Consensus       997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen  997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence                 322  222334444422           333344 55666655543      222                 245


Q ss_pred             C-CHHHHHHHHHHHHHcCCcHHHH
Q 024243          221 D-DCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       221 ~-~~~~~~~la~il~~~Ge~eea~  243 (270)
                      . |+..+..-+.++....++++|-
T Consensus      1077 ~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred             CCCHHHHHHHHHHHHhHHHHHHHH
Confidence            3 6777777777777777777664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.50  E-value=5.7  Score=33.89  Aligned_cols=91  Identities=18%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH--
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYV--  225 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~--  225 (270)
                      -.++..+|.+++. .||+++|++.|.++.+..-...   +.+.++-.+.+. .+++.....++.+|-..-..  +...  
T Consensus        36 r~~~~~l~~~~~~-~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   36 RMALEDLADHYCK-IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3677799977774 7999999999999888765433   334445545566 79999999999998766432  3332  


Q ss_pred             --HHHHHHHHHHcCCcHHHHhc
Q 024243          226 --LASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       226 --~~~la~il~~~Ge~eea~~~  245 (270)
                        ....|..+...+++.++...
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~  135 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAEL  135 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHH
Confidence              23345566777889988865

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.33  E-value=4.7  Score=36.83  Aligned_cols=67  Identities=12%  Similarity=0.032  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 024243          154 LLLSNYARFLKEAR------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK----------------DASRAESY  211 (270)
Q Consensus       154 ~al~~lA~~l~~~~------Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g----------------~~e~A~~~  211 (270)
                      .++..+|.+... .      ++.+++.+.|++|++++|+...+|+.+|..+.....                -...|+..
T Consensus       253 ~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~  331 (352)
T PF02259_consen  253 KAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG  331 (352)
T ss_pred             HHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence            556667765554 4      889999999999999999999999999976443211                11358888


Q ss_pred             HHHHHHhCCC
Q 024243          212 FDQAVKAAPD  221 (270)
Q Consensus       212 ~ekAL~~~P~  221 (270)
                      |-+++...++
T Consensus       332 y~~al~~~~~  341 (352)
T PF02259_consen  332 YLKALSLGSK  341 (352)
T ss_pred             HHHHHhhCCC
Confidence            9999998887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.59  E-value=8.1  Score=38.98  Aligned_cols=110  Identities=16%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       134 d~~eA~~~y~kALeld-P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      +++..-.+|.+++.+. -+-..++.++-+++.. ..=...|...|.+|-+.--.-.+++..-|.+-+...++.+-|..+|
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF  424 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF  424 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence            3555666666666653 2334455566655554 3556677777777776443334666666656555578888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +-.|+..++.+..-..+..++..++++..+..
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~  456 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARA  456 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHH
Confidence            88888888888888888888888888777763

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.50  E-value=1.8  Score=32.89  Aligned_cols=53  Identities=13%  Similarity=0.052  Sum_probs=40.5

Q ss_pred             CCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 024243          132 NHGNNSTDLYYQKMIQADPR---------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP  185 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~---------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP  185 (270)
                      .+++.+|...+.+.+.....         ...++.++|.+.. ..|++++|++.++.||++-.
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence            57999998888887765322         2466677885555 58999999999999998775

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.32  E-value=1.9  Score=27.31  Aligned_cols=33  Identities=12%  Similarity=0.055  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFD--QAVKAAPDD  222 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~e--kAL~~~P~~  222 (270)
                      +.++.+|..+++ +|++++|+.+|+  -+..+++.|
T Consensus         2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence            567788877777 999999999955  888887754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.21  E-value=9.7  Score=34.97  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHH---HHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQA-----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLS---MYGDLIWQS  201 (270)
Q Consensus       133 gd~~eA~~~y~kALel-----dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~---~lA~ll~~~  201 (270)
                      ..+.++..+|++|..+     .|+-+..-...|.-+.+ .-+.++|+++|++++.+-.++.   .++-   ..+.++.+ 
T Consensus        85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr-  162 (308)
T KOG1585|consen   85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR-  162 (308)
T ss_pred             HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-
Confidence            4677778888888776     34444333344433443 5789999999999988765433   3333   33334555 


Q ss_pred             cCCHHHHHHHHHHHH----Hh--CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          202 HKDASRAESYFDQAV----KA--APDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL----~~--~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .++|.+|-..+.|-.    +.  .+..+..+.....++....++..++..
T Consensus       163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc  212 (308)
T KOG1585|consen  163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKC  212 (308)
T ss_pred             hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            788888877777633    22  344444555555555566677777754

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.17  E-value=2.8  Score=38.77  Aligned_cols=79  Identities=19%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      +..=+...++.++.  ....++..++..+. ..++++.+++.+++.|+.+|.+..+|..+-..+++ .|+...|+..|++
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~  212 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence            44444444444443  23456666775555 57999999999999999999999999888877887 9999999999998


Q ss_pred             HHH
Q 024243          215 AVK  217 (270)
Q Consensus       215 AL~  217 (270)
                      .-+
T Consensus       213 l~~  215 (280)
T COG3629         213 LKK  215 (280)
T ss_pred             HHH
Confidence            766

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.87  E-value=2.7  Score=35.92  Aligned_cols=93  Identities=15%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC--CCHHHH---HHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDGNVL---SMYGDLI  198 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP--~n~~al---~~lA~ll  198 (270)
                      .+|.+.|++++|++.|.++.+.....   ...+.++-++... .+|+.....+..+|-.+-.  .+.+..   ..+..++
T Consensus        44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~  122 (177)
T PF10602_consen   44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA  122 (177)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            56777899999999999988875443   2444455545553 6999999999988865543  333332   2223344


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC
Q 024243          199 WQSHKDASRAESYFDQAVKAAP  220 (270)
Q Consensus       199 ~~~~g~~e~A~~~~ekAL~~~P  220 (270)
                      ....++|.+|-..|-.++....
T Consensus       123 ~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  123 NLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHhchHHHHHHHHHccCcCCC
Confidence            4558999999999988775543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03138 Protein TOC75; Provisional

Probab=87.45  E-value=1.2  Score=46.78  Aligned_cols=16  Identities=13%  Similarity=0.272  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHhCCCC
Q 024243          172 KAEEYCARAILMSPND  187 (270)
Q Consensus       172 eA~e~~ekAIeldP~n  187 (270)
                      ..++.+.++|.+.|..
T Consensus       165 ~~e~~l~~~i~~kpG~  180 (796)
T PLN03138        165 GTEDSFFEMVTLRPGG  180 (796)
T ss_pred             chHHHHHHHHhcCCCC
Confidence            3556677777777753

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.28  E-value=1.1  Score=28.81  Aligned_cols=29  Identities=14%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      +++..+|.+... .++|++|+..|+++|++
T Consensus         2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLE-NENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence            466777777777 78888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.46  E-value=4.8  Score=38.39  Aligned_cols=89  Identities=9%  Similarity=0.070  Sum_probs=67.3

Q ss_pred             CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHcCCH
Q 024243          132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-----DGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-----n~~al~~lA~ll~~~~g~~  205 (270)
                      .|-+..|.++.+-.+.+||. ||.....+-..+..+.++|+--+++++........     -+...+..|..++. .++-
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~  194 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE  194 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence            36899999999999999999 88888777778877779999888888876653221     12334455534555 5665


Q ss_pred             ---------------HHHHHHHHHHHHhCCC
Q 024243          206 ---------------SRAESYFDQAVKAAPD  221 (270)
Q Consensus       206 ---------------e~A~~~~ekAL~~~P~  221 (270)
                                     ++|...+.+|+...|.
T Consensus       195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  195 ESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             cccccccccccccchhHHHHHHHHHHHHhHH
Confidence                           8999999999998773

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.45  E-value=2.9  Score=41.22  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             HHHHHHHHH--HHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          153 PLLLSNYAR--FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA  230 (270)
Q Consensus       153 ~~al~~lA~--~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la  230 (270)
                      .+..+.++.  +++ .+|+|.++.-+..-..+++| .+.++..+|.+++. .++|++|-.++.+.-- +.+-.+.....|
T Consensus       460 ~eian~LaDAEyLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~LP~-n~~~~dskvqKA  535 (549)
T PF07079_consen  460 EEIANFLADAEYLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKLPP-NERMRDSKVQKA  535 (549)
T ss_pred             HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhCCC-chhhHHHHHHHH
Confidence            344444443  355 47999999999999999999 99999999977777 9999999999876522 222233444444


Q ss_pred             HHHH
Q 024243          231 HFLW  234 (270)
Q Consensus       231 ~il~  234 (270)
                      .+++
T Consensus       536 l~lC  539 (549)
T PF07079_consen  536 LALC  539 (549)
T ss_pred             HHHH
Confidence            4443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.35  E-value=3.6  Score=36.34  Aligned_cols=66  Identities=17%  Similarity=0.140  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPR--N----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQ  200 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~--n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~  200 (270)
                      =+..|...|+++++....  .    ..+++.+| .|....|++++|.+.|.++|..--... ..+..+|.-.|+
T Consensus       140 fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig-eL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  140 FLRKALEFYEEAYENEDFPIEGMDEATLLYLIG-ELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            356677777777766433  2    46777788 555568999999999999998443222 366676655543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.88  E-value=9.7  Score=33.30  Aligned_cols=109  Identities=9%  Similarity=0.018  Sum_probs=75.1

Q ss_pred             CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH-----HHHHHHHcCCH
Q 024243          133 HGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY-----GDLIWQSHKDA  205 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l-----A~ll~~~~g~~  205 (270)
                      +..++|+..|..+-+-.-.+  ..+....|.++. ..|+-..|+.+|..+-...| -|.+...+     +.++.. +|.|
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD-~gsy  148 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVD-NGSY  148 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhc-cccH
Confidence            56788888887765554443  244445564444 47999999999998876554 34443333     333444 8999


Q ss_pred             HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          206 SRAESYFDQAV-KAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       206 e~A~~~~ekAL-~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++-....+..- +-+|-...+...++..-|+.|++..+..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~  188 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKS  188 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHH
Confidence            98877777643 5566667788889999999999988874

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.67  E-value=5.8  Score=40.78  Aligned_cols=90  Identities=10%  Similarity=0.055  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN------VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~------al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      ...|+.-+ -+++ ..+|..+++.|...+..-|.|..      ...+++ ++|....+.++|+++++.|-+.+|.++...
T Consensus       355 ~iLWn~A~-~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  355 TLLWNTAK-KLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHhhH-HHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            34454444 5554 58999999999999998886543      445666 456569999999999999999999999988


Q ss_pred             HHHHHHHHHcCCcHHHHhc
Q 024243          227 ASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~  245 (270)
                      ...-.+....+.-++|-..
T Consensus       432 ~~~~~~~~~E~~Se~AL~~  450 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTC  450 (872)
T ss_pred             HHHHHHHHHhcchHHHHHH
Confidence            8888888888888877643

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=85.53  E-value=7.4  Score=41.78  Aligned_cols=96  Identities=10%  Similarity=-0.032  Sum_probs=72.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEAR---G---DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~---G---d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~  202 (270)
                      .+.|++|+..|++.-.-.|+-   -++.+..|..+.+..   +   .+++|+.-|++.-. -|.-+-=|...|.+ |+.+
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~  565 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV-YQRL  565 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH-HHHh
Confidence            478999999999999999886   467777886666532   3   46777777777543 46666667777844 4559


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                      +++++-+..|.-|++..|.+|.+-...
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (932)
T PRK13184        566 GEYNEEIKSLLLALKRYSQHPEISRLR  592 (932)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence            999999999999999999987654333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=85.46  E-value=19  Score=29.57  Aligned_cols=84  Identities=11%  Similarity=0.083  Sum_probs=55.9

Q ss_pred             CChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHH-------HhCCCCHHHHH-
Q 024243          133 HGNNSTDLYYQKMIQADPRN------------PLLLSNYARFLKEARGDLLKAEEYCARAI-------LMSPNDGNVLS-  192 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAI-------eldP~n~~al~-  192 (270)
                      +.|++|...++++.+...+-            +..+..|+..+.. +|+|++++...++||       +++.+....|+ 
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            57899999999999874332            3455567766664 799987665555554       56666665553 


Q ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          193 ---MYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       193 ---~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                         ..| +.+...|+.++|+..|+++.++
T Consensus       102 aVfsra-~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  102 AVFSRA-VALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHH-HHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHhcCChHHHHHHHHHHHHH
Confidence               344 3455589999999999998875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.36  E-value=4.8  Score=37.50  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA  215 (270)
                      +.-...+++.+..   .......-+.-+.. .+++.+|...|..+++.+|++.++...|+.++.. .|+.+.|..++...
T Consensus       120 sqlr~~ld~~~~~---~~e~~~~~~~~~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~l  194 (304)
T COG3118         120 SQLRQFLDKVLPA---EEEEALAEAKELIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAAL  194 (304)
T ss_pred             HHHHHHHHHhcCh---HHHHHHHHhhhhhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhC
Confidence            3455555665555   22233334435554 6999999999999999999999999999988888 99999999988775


Q ss_pred             HHh
Q 024243          216 VKA  218 (270)
Q Consensus       216 L~~  218 (270)
                      =..
T Consensus       195 P~~  197 (304)
T COG3118         195 PLQ  197 (304)
T ss_pred             ccc
Confidence            433

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.80  E-value=7.4  Score=40.01  Aligned_cols=84  Identities=7%  Similarity=-0.041  Sum_probs=66.3

Q ss_pred             CChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          133 HGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .+|..+++.|...+.--|.+      +....+++ +.|....+.++|.++++.|-+.||.++-....+-..... .++-+
T Consensus       368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se  445 (872)
T KOG4814|consen  368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE  445 (872)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence            68999999999998876665      45556677 444457899999999999999999998877666644444 78889


Q ss_pred             HHHHHHHHHHHh
Q 024243          207 RAESYFDQAVKA  218 (270)
Q Consensus       207 ~A~~~~ekAL~~  218 (270)
                      +|+.+..+....
T Consensus       446 ~AL~~~~~~~s~  457 (872)
T KOG4814|consen  446 EALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHHHhh
Confidence            999888876654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.44  E-value=1.4  Score=25.45  Aligned_cols=21  Identities=33%  Similarity=0.235  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHH
Q 024243          156 LSNYARFLKEARGDLLKAEEYC  177 (270)
Q Consensus       156 l~~lA~~l~~~~Gd~~eA~e~~  177 (270)
                      ...+|..+.. +|++++|...+
T Consensus         4 ~~~la~~~~~-~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLA-QGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHH
Confidence            3444444442 45555554444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.41  E-value=4.7  Score=37.76  Aligned_cols=47  Identities=15%  Similarity=0.072  Sum_probs=29.1

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      .|.+.+|++++++++.+||-+...+..+-.++.. +|+--.|...|++
T Consensus       292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyer  338 (361)
T COG3947         292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYER  338 (361)
T ss_pred             cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHH
Confidence            5677777777777777777666666555544444 6665555555544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.90  E-value=1.5  Score=25.21  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      .++..+|.+++. .|++++|+..+++
T Consensus         2 ~a~~~la~~~~~-~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLA-QGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHhC
Confidence            467889988888 9999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.38  E-value=12  Score=38.04  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC--C
Q 024243          133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARA-----ILMSPNDGNVLSMYGDLIWQSHK--D  204 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekA-----IeldP~n~~al~~lA~ll~~~~g--~  204 (270)
                      |-+..|.++.+-.++++|. ||.+...+-..+.....+|.==+++++.+     |..-|+.+..+ .+|..+...+.  .
T Consensus       356 GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~~  434 (665)
T KOG2422|consen  356 GCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEEDD  434 (665)
T ss_pred             CChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChhh
Confidence            6677777777777778877 77776666656665556666666665555     33346555443 45544554333  2


Q ss_pred             HHHHHHHHHHHHHhCC
Q 024243          205 ASRAESYFDQAVKAAP  220 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P  220 (270)
                      .+.|...+.+|++..|
T Consensus       435 rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  435 RQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            5567777777777776

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=83.32  E-value=1.3  Score=42.10  Aligned_cols=111  Identities=12%  Similarity=-0.008  Sum_probs=84.0

Q ss_pred             cCCChHHHHHHHHHHHHh-C----------CC--------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQA-D----------PR--------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALel-d----------P~--------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al  191 (270)
                      .+++++.|..-|.++++. +          ++        --....+++.+.. ..+++..|...+..+++.++....++
T Consensus       234 kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~  312 (372)
T KOG0546|consen  234 KKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAH  312 (372)
T ss_pred             hhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHH
Confidence            346788888888777653 1          11        0123334554444 46899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      +..+..+.. ..++++|++.+..+....|++..+...+..+-....++.+..
T Consensus       313 ~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~  363 (372)
T KOG0546|consen  313 YRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQ  363 (372)
T ss_pred             HHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHH
Confidence            999955555 999999999999999999999999888887776666655443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.94  E-value=5.7  Score=40.56  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 024243          141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA--  218 (270)
Q Consensus       141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~--  218 (270)
                      +.++||++.++...- +.++    ...|+++.|.++..     +.++..-|..||.+... .+++..|.++|.+|-..  
T Consensus       629 ~~e~AL~~s~D~d~r-Fela----l~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~~~  697 (794)
T KOG0276|consen  629 MKEQALELSTDPDQR-FELA----LKLGRLDIAFDLAV-----EANSEVKWRQLGDAALS-AGELPLASECFLRARDLGS  697 (794)
T ss_pred             chHhhhhcCCChhhh-hhhh----hhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhh-cccchhHHHHHHhhcchhh
Confidence            445555555443322 2332    23466666655432     35677888999987777 99999999999987554  


Q ss_pred             ------CCCCHHHHHHHH-------------HHHHHcCCcHHHHhccCCCCCCCCC-CCCCCCCChh
Q 024243          219 ------APDDCYVLASHA-------------HFLWDADEDEEDEQVGEEPAPPSYN-FQQRPPLPPH  265 (270)
Q Consensus       219 ------~P~~~~~~~~la-------------~il~~~Ge~eea~~~~e~~~~~~p~-f~~~~~~~~~  265 (270)
                            .-.+...+..++             .+|+..|+.++..+.+...+.+|-+ |.....+|++
T Consensus       698 LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~  764 (794)
T KOG0276|consen  698 LLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQ  764 (794)
T ss_pred             hhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHH
Confidence                  223444333333             2567788888888777777777765 6655666654

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.26  E-value=7.8  Score=33.03  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       170 ~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                      .+..++..++.++..| ++.++.+++.++.. +|+.++|..+.+++....|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence            4555667788888889 88888899966776 999999999999999999943

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=81.84  E-value=4.2  Score=37.35  Aligned_cols=63  Identities=11%  Similarity=0.069  Sum_probs=55.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~  196 (270)
                      ++++.|..+-++.+.++|.++.-+...|-++. ..|.+.-|++-++..++.-|+++.+-...+.
T Consensus       195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             hchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            78999999999999999999999999994554 5899999999999999999999888755553

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.01  E-value=30  Score=31.37  Aligned_cols=62  Identities=21%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      +..++++...+.-++.+|.+......|=..++ +.|+|++|...++-+-++.|++..-...|-
T Consensus        15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr   76 (273)
T COG4455          15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYR   76 (273)
T ss_pred             ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence            57899999999999999999887777765666 579999999999999999998765444444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.82  E-value=11  Score=28.42  Aligned_cols=56  Identities=13%  Similarity=0.088  Sum_probs=36.7

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 024243          162 FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI--WQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       162 ~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll--~~~~g~~e~A~~~~ekAL~~  218 (270)
                      -+|. ..+..+|+..+++|++..++..+.+..+|.++  +...|+|.+++.+..+=+++
T Consensus        15 kLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   15 KLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3453 57778888888888888887777777776442  22367777777665554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4907 Predicted membrane protein [Function unknown]

Probab=80.60  E-value=0.94  Score=44.42  Aligned_cols=10  Identities=30%  Similarity=0.597  Sum_probs=6.1

Q ss_pred             CCCCCccccc
Q 024243           19 KDSSPVPFTL   28 (270)
Q Consensus        19 ~~~~~~~~~~   28 (270)
                      ||-+||.|.+
T Consensus       502 ke~~pesI~~  511 (595)
T COG4907         502 KEAKPESIHL  511 (595)
T ss_pred             hhCCCcceeh
Confidence            4567777544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-07
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-04

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             +  ++  P++ +     A       GD    E    R + + P     ++  G  +  
Sbjct: 11  QLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGR-VRW 68

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
           + +  + A     QA  AAP+   +     H L DA + E 
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 19/127 (14%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             Q+   A P +P +       L++A G    A     RA  + P +  + +       +
Sbjct: 79  LLQQASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLL-NWRR 136

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDE---EDEQVGEEPAPPSYNFQ 257
              D    +    Q   A       +   A    DA   E         +  A       
Sbjct: 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLA 196

Query: 258 QRPPLPP 264
                  
Sbjct: 197 PTRVRSK 203

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +Q+M        LLL+  A     A+G    AE     A+         L     L   
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACH-MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 201 SHKDASRAESYFDQAVKAAPDDCYV 225
             K       Y  Q   A     ++
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHPFI 271

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 14/105 (13%), Positives = 22/105 (20%), Gaps = 2/105 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARF-LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
             +KM   D    L     A   L      L  A                +L+       
Sbjct: 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA-ACH 210

Query: 200 QSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ 244
            +      AE    +A+         L +         +  E   
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 54.7 bits (131), Expect = 6e-09
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 142 YQKMIQADPRNPLLL-SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y +++  +  +P L+   Y +F +     +        +A   +    +V      + + 
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
             KD S A   F+  +K   D    + ++  +L   +ED  
Sbjct: 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 221

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 1/82 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y+K++Q +  N         +         K  E   + +             G L   
Sbjct: 110 MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG-LSKL 168

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                 +A +   + +   P  
Sbjct: 169 FTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +Y++++Q  P N   L   A      RG    A     + + +  ++       G+  + 
Sbjct: 76  FYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVL 226
           + +   +      + + +     Y  
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYAR 160

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 13/107 (12%), Positives = 39/107 (36%), Gaps = 2/107 (1%)

Query: 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194
           + +   Y+  + +    +  L +  A   K+   +  KA  +    +  +PN+ + L   
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKELLQKAPNNVDCLEAC 94

Query: 195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
            + +         A   +++ ++   D+        ++ +   E E+
Sbjct: 95  AE-MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYA--RFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL- 197
            ++K ++  P+NP   S  A   +  +       A +   +AI ++P++  +  +     
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 198 --IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
             + +  ++    E   ++A++ AP    VL S A F    DE ++
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDL 197
           + +K  +A+     + S  A     A     +AE Y  +             +   YG+ 
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALA-DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380

Query: 198 IWQSHKDASRAESYFDQAVKAAPD 221
                K   +A  +F + VK    
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQK 404

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
             ++ ++  P    +L + A+F +  + +  KA E   +A+   PN+       G     
Sbjct: 235 LVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293

Query: 194 YGDLIWQSHKDASR-----------AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
               +    ++              A ++  +A +A  +   V +  A     AD+ EE
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 11/119 (9%)

Query: 141 YYQKMIQADPRNPLLLSNYAR---------FLKEARGDLLKAEEYCARAILMSPNDGNVL 191
           Y  K+     +        +           LK       +A+    +A+   P +    
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175

Query: 192 SMYGDLIWQSHK--DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248
           S      ++      +  A     QA++  PD+ Y+    A  L    E+ E+E  GE+
Sbjct: 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEK 234

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 19/110 (17%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKE------------------ARGDLLKAEEYCARAIL 182
             +K ++  P N  L        +                       +  A  +  +A  
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF 232
            + N   V S+    +         AE YF +              H  +
Sbjct: 329 ANDNLFRVCSILA-SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y++K ++ +   P +    A  L +   + + A +Y          +   L +    + +
Sbjct: 163 YFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGI-RLAK 220

Query: 201 SHKDASRAESYFDQAVKAAPD 221
             +D   A SY  Q  +  P 
Sbjct: 221 VFEDRDTAASYGLQLKRLYPG 241

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLI 198
            Y+K + +D RN  +L+NY  FL E +    +A +    A   +  P    V    G L+
Sbjct: 93  EYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLG-LV 150

Query: 199 WQSHKDASRAESYFDQAVKAAPD 221
               K  ++A+ YF+++++   +
Sbjct: 151 SLQMKKPAQAKEYFEKSLRLNRN 173

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            +K ++ DP +    +  A   +    +   A+E   +A+     +  VL+ YG      
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARVLNNYG-GFLYE 117

Query: 202 HKDASRAESYFDQAVK 217
            K    A     +A +
Sbjct: 118 QKRYEEAYQRLLEASQ 133

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 11/90 (12%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
            G++  D    K  +                 + RG+  +A+    +A+ + P+  +  +
Sbjct: 17  RGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQ-RGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
               +++Q+  +   A+  + +A+ +   +
Sbjct: 76  ALA-VVFQTEMEPKLADEEYRKALASDSRN 104

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 142 YQKMIQADPRNPLLLS-NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y +++  +  +P L+   Y +F +     +        +A   +    +V      + + 
Sbjct: 344 YNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
             KD S A   F+  +K   D    + ++  +L   +ED  
Sbjct: 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 8/96 (8%), Positives = 25/96 (26%), Gaps = 5/96 (5%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            ++K  +       +    A        D   A +     +    +    +  Y D +  
Sbjct: 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS- 436

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDA 236
              + +     F++ + +           +  +W  
Sbjct: 437 HLNEDNNTRVLFERVLTSGSLP----PEKSGEIWAR 468

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLI 198
            +++ +   P +  + +NY  FL        ++  Y  +A+     P         G + 
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG-IC 122

Query: 199 WQSHKDASRAESYFDQAVKAAPD 221
                    AE+Y  +++ A P 
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQ 145

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            +  +++DP+N L     A   +       KA+E   +A+ + P+   + + YG  +   
Sbjct: 31  IEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89

Query: 202 HKDASRAESYFDQAVK 217
               + + +YFD+A+ 
Sbjct: 90  LNRPAESMAYFDKALA 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y+K ++  P      SN A  L++ +G L +A  +   AI +SP   +  S  G    +
Sbjct: 31  LYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMG-NTLK 88

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
             +D   A   + +A++  P      ++ A    D+    E
Sbjct: 89  EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207
           + P +   L+N A   +E  G++ +A     +A+ + P      S     + Q       
Sbjct: 4   SCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQE 61

Query: 208 AESYFDQAVKAAPDDCYVLASHAHFLWD 235
           A  ++ +A++ +P      ++  + L +
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKE 89

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 4/127 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y + IQ +P      SN A   K++ G++ +A      A+ + P+  +          Q
Sbjct: 99  CYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLA-HCLQ 156

Query: 201 SHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ 258
              D +  +    + V    D  +   L S               +        +    +
Sbjct: 157 IVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 216

Query: 259 RPPLPPH 265
              L   
Sbjct: 217 INVLHKP 223

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +Q +   D  +            +A G    A    +   +M   +        +    
Sbjct: 43  VFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE-CLL 100

Query: 201 SHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQ 244
              + + AES    A +   +  +   L++    + +A + +++ +
Sbjct: 101 QXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMK 146

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 2/80 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            + M+     N LL     +   E       A  +   A+   P         G    Q 
Sbjct: 8   LEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGK-TLQG 65

Query: 202 HKDASRAESYFDQAVKAAPD 221
             D + A   ++  + AA  
Sbjct: 66  QGDRAGARQAWESGLAAAQS 85

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +++ +   D  N   +   A   +  +    +A +  A A  +  ND   +   G    +
Sbjct: 58  FFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             K   +A+  F+  ++ + D+
Sbjct: 117 L-KAPLKAKECFELVIQHSNDE 137

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 10/88 (11%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             Q  I+A+P+N    +    +    + D   +     +A+ +   +  + +    +++ 
Sbjct: 32  ALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYY 90

Query: 201 S--HKDASRAESYFDQAVKAAPDDCYVL 226
                  ++  +  D+A+    ++   L
Sbjct: 91  QASQHMTAQTRAMIDKALALDSNEITAL 118

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
           Y++ +Q    N  L +  A  L     +    +      +A+ +  N+   L +      
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA-SDA 125

Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
               + ++A   + + +      
Sbjct: 126 FMQANYAQAIELWQKVMDLNSPR 148

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
           +Q +     R    L  +A     ++ +     +     I  +P +    ++ G+  +  
Sbjct: 3   WQAVRAEYQRQRDPLHQFA-----SQQNPEAQLQALQDKIRANPQNSEQWALLGE-YYLW 56

Query: 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV 245
             D S +   + QA++   ++  + A+ A  L+         Q 
Sbjct: 57  QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  ++ + +P N  +L   +  +      L ++  +   AI  +P      S  G  +++
Sbjct: 21  HCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG-NVYK 78

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  A  ++  A++  PD 
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +    I+ +P      SN     KE RG L +A E+   A+ + P+  +           
Sbjct: 55  FSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHYRHALRLKPDFIDGYINLA-AALV 112

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
           +  D   A   +  A++  PD 
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +++K +  DP       N    LKE      +A     RA+ +SPN   V       ++ 
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKE-ARIFDRAVAAYLRALSLSPNHAVVHGNLA-CVYY 248

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  A   + +A++  P  
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +Y+  ++  P       N A  L  A GD+  A +    A+  +P+   V S  G  + +
Sbjct: 89  HYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLG-NLLK 146

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
           +      A++ + +A++  P+ 
Sbjct: 147 ALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y   +Q +P    + S+    LK   G L +A+    +AI   PN     S  G  ++ 
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKA-LGRLEEAKACYLKAIETQPNFAVAWSNLG-CVFN 180

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
           +  +   A  +F++AV   P+ 
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y++ I+  P  P    N A  LKE +G + +AE+    A+ + P   + L+     I +
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLA-NIKR 316

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              +   A   + +A++  P+ 
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y   ++  P +   L+N A   +E +G++ +A     +A+ + P      S     + Q
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQ 350

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  A  ++ +A++ +P  
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF 372

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194
           N  ++    + +     N  ++ + A        D     +  +  +   P   + L ++
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 195 GDLIWQSHKDASRAESYFDQAVKAAPDD 222
              + + +K  +       + V   P +
Sbjct: 63  IGTLVELNKA-NELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 15/108 (13%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
               +++ DP +   L  +   L E      +      + + + P++       G    M
Sbjct: 44  LTSVVMEKDPFHASCLPVHIGTLVE-LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
            G            A  Y  +A            ++ H      E ++
Sbjct: 103 VGHKNEH-------ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
           Y   I    ++  LL   A  L   R   +       + + + P + +V  ++   + +S
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFV-RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352

Query: 202 HKDASRAESYFDQAVKAAPDD 222
            +  ++     +  V   P+ 
Sbjct: 353 GEK-NKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            +K    +       +N     ++       A +   + +L+S ND NV +    L++  
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIA-LVYLH 562

Query: 202 HKDASRAESYFDQAVKAAPDD 222
            K    A ++  +++  +P++
Sbjct: 563 KKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 16/108 (14%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
              K+++ DP N  +   +   L E+ G+  K        +   P         G     
Sbjct: 327 ITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
              +        S A  YF ++    P         AH      E ++
Sbjct: 386 VNKI--------SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +Q +   D  +           + + G   +A +  +   LM  N+             
Sbjct: 40  IFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAA-ECHL 97

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D   AES F  A   A   
Sbjct: 98  QLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 9/81 (11%), Positives = 19/81 (23%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
              +          L        +A G    A++      ++   D       G    QS
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLG-ACRQS 64

Query: 202 HKDASRAESYFDQAVKAAPDD 222
                +A   +        ++
Sbjct: 65  LGLYEQALQSYSYGALMDINE 85

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             ++++ +       L    + L        +AE   ++A+ + P      +  G++ W+
Sbjct: 90  QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D + A + F  A+    + 
Sbjct: 150 K-GDVTSAHTCFSGALTHCKNK 170

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY 194
              K ++ +P      +       + +GD+  A    + A+    N         VL   
Sbjct: 125 LLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQL 183

Query: 195 G-DLIWQSHKDASRAESYFDQAVKAAPDD 222
             D   +  +    +      AV+    D
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 11/85 (12%), Positives = 28/85 (32%)

Query: 157 SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216
            +  R  ++ + ++ K  +     +  +  +   L + G  +  +   +  AE    +AV
Sbjct: 71  EDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV 130

Query: 217 KAAPDDCYVLASHAHFLWDADEDEE 241
           K  P+            W   +   
Sbjct: 131 KLEPELVEAWNQLGEVYWKKGDVTS 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 122 DGRW---------GSWDPNNHGNNS-TDL-YYQKMIQ-ADPRNPLLLSNYARFLKEARGD 169
           D R+          +W+ +    N+   L +Y+  I   DP+   L++    FL +   +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 170 LLKAEEYC-ARAILMSPNDGNVLSMYGDLIWQSHKDASR 207
           L+ ++     R  LM+ ++     ++ +    +HK   R
Sbjct: 559 LICSKYTDLLRIALMAEDEA----IFEE----AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 48/291 (16%), Positives = 81/291 (27%), Gaps = 83/291 (28%)

Query: 1   MLLRSSSTP----IL-NSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPL 55
            LL+S        +L N     A ++    F L+     C  L + TR    TD   L  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNA----FNLS-----CKILLT-TRFKQVTD--FLSA 283

Query: 56  PKKKATSNVFNGLALEEKEDESETASFDGGWLG-------KEACEIGVLVGGGIYGGGGN 108
                 S   + + L   E +S        +L        +E           I      
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSII----AE 335

Query: 109 MCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQA--DPRNPLLLSNY----ARF 162
                      DG   W +W    H N         +I++  +   P          + F
Sbjct: 336 SIR--------DGLATWDNWK---HVNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 163 LKEAR----------GDLLKAE------EYCARAILMSPNDGNVLSMYG---DLIWQS-- 201
              A            D++K++      +    +++      + +S+     +L  +   
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 202 ----HK---DASRAESYFDQAVKAAP-DDCYVLASH-AHFLWDADEDEEDE 243
               H+   D       FD      P  D Y   SH  H L + +  E   
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMT 491

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 30/111 (27%)

Query: 147 QADPRNPLLLSNYARFLKE--ARGDLLKAEEY--CARAILMS-----PNDGNVLSMYGDL 197
           +    NP  LS  A  +++  A  D  K          I  S     P +     M+  L
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRL 378

Query: 198 IWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248
                       S F  +         +L+     +W      +   V  +
Sbjct: 379 ------------SVFPPSAHIPTI---LLSL----IWFDVIKSDVMVVVNK 410

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +   +  DP N +     A       G    A     + I +  +        G  +  
Sbjct: 25  QFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFTAARLQRG-HLLL 82

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  AE  F + +K+ P +
Sbjct: 83  KQGKLDEAEDDFKKVLKSNPSE 104

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  K+++    +  L    A    +  G+  KA      A  +  ++          ++ 
Sbjct: 142 FLDKILEVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKSDNTEAFYKIS-TLYY 199

Query: 201 SHKDASRAESYFDQAVKAAPD--DCY 224
              D   + S   + +K   D   C+
Sbjct: 200 QLGDHELSLSEVRECLKLDQDHKRCF 225

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 13/136 (9%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            YQ  +  D     +      +     G+   A +Y  + I  +  D  V    G   + 
Sbjct: 96  QYQAAVDRDTTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYY 153

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN----- 255
            +K+  +A+S F + ++  P+        A      D D +        A P Y      
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGL-----AKPYYEKLIEV 208

Query: 256 -FQQRPPLPPHLAAAY 270
                      L  A 
Sbjct: 209 CAPGGAKYKDELIEAN 224

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 3/108 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +   +  DP N +     A       G    A     + I +  +        G  +  
Sbjct: 48  QFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIQLKMDFTAARLQRG-HLLL 105

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248
                  AE  F + +K+ P +     + +  L  +DE +        
Sbjct: 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ-LIKSDEMQRLRSQALN 152

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            + K  + DP N       A             E   + A    P    V + +   I  
Sbjct: 326 DFDKAKELDPENIFPYIQLACLAYR-ENKFDDCETLFSEAKRKFPEAPEVPNFFA-EILT 383

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D  +A   +D A++     
Sbjct: 384 DKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 17/108 (15%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEAR--------GDLLKAE 174
           N      TD          Y   I+ + +   +    A  + +A          + ++A 
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435

Query: 175 EYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
               +A  + P            +    +D   A + F+++   A   
Sbjct: 436 NLLEKASKLDPRSEQAKIGLA-QMKLQQEDIDEAITLFEESADLARTM 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 20/148 (13%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
            +H      L           +     P+  + ++++    K+A   + +      +A  
Sbjct: 76  ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG-GKQALETVQRLLPVLCQAHG 134

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEED 242
           ++P     ++ +     Q+ +          QA    P+    +AS+       +  +  
Sbjct: 135 LTPEQVVAIASHD-GGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR- 192

Query: 243 EQVGEEPAPPSYNFQQRPPLPPHLAAAY 270
                    P     Q   L P    A 
Sbjct: 193 -------LLPVLC--QAHGLTPQQVVAI 211

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
               +   P   + ++++    K+A   + +      +A  ++P     ++ +     Q+
Sbjct: 61  TGAPLNLTPEQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQA 118

Query: 202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
            +   R      QA    P+    +ASH       +  + 
Sbjct: 119 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQA 158

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +QK    +P N       A  L + +G   ++E +     L  P    V + +   I  
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYK-QGKFTESEAFFNETKLKFPTLPEVPTFFA-EILT 389

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D   A   +D A +     
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQ 411

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD---- 196
           +Y K I+ DP N    +N A    E      +  ++C +A+ +         +       
Sbjct: 30  HYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88

Query: 197 --LIWQSHKDASRAESYFDQAVKAAPD 221
               +Q   D S A  +F +++    D
Sbjct: 89  AGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 141 YYQKMIQADPRNP-------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSM 193
           Y  ++++ D RN         ++SN   +   A   L +  +Y    I + P++ +  + 
Sbjct: 222 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA--VLEREVQYTLEMIKLVPHNESAWNY 279

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDDC--YVLASHAHFLWDADEDEEDE 243
              ++    +  S+  +  +Q +   P     Y++A       D  E++ D 
Sbjct: 280 LKGIL--QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 141 YYQKMIQADPRNPLLLSN-YARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
            Y + I  +P   +  +N    +LK       +A   C RA+ +           G    
Sbjct: 31  CYGRAITRNPLVAVYYTNRALCYLK--MQQPEQALADCRRALELDGQSVKAHFFLG-QCQ 87

Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
              +    A +   +A   A + 
Sbjct: 88  LEMESYDEAIANLQRAYSLAKEQ 110

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208
           DP +P      A+   +   +  +A       +   P+        G L ++       A
Sbjct: 3   DPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKL-YERLDRTDDA 60

Query: 209 ESYFDQAVKAAPD 221
              + Q ++ A +
Sbjct: 61  IDTYAQGIEVARE 73

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 23/137 (16%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
            + + +   P  P + +    +L +A G+   A E     + + P         G  L  
Sbjct: 65  DFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPS 253
            G            A+       +  P+D +            DE +  E + +      
Sbjct: 124 GGRD--------KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ------ 169

Query: 254 YNFQQRPPLPPHLAAAY 270
            +F++            
Sbjct: 170 -HFEKSDKEQWGWNIVE 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.64
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.6
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.59
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.59
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.56
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.56
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.48
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.48
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.48
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.46
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.44
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.44
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.44
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.43
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.42
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.42
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.41
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.4
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.39
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.39
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.36
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.36
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.35
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.34
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.33
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.32
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.32
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.32
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.3
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.28
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.28
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.27
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.25
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.25
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.23
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.21
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.18
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.16
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.16
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.01
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.01
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.0
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.99
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.96
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.96
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.96
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.95
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.9
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.87
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.8
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.8
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.72
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.69
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.68
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.66
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.65
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.61
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.49
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.42
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.33
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.3
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.12
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.02
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.0
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.77
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.57
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.48
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.47
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.45
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.18
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.13
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.76
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.67
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.49
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.43
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.42
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.25
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.92
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.65
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.52
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.75
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.26
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.63
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.33
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.06
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.83
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.43
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.62
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	80.76

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.76  E-value=1.2e-17  Score=132.19  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=97.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|++.|++||+++|++..+|.++|.++.. +|+++
T Consensus        21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~   98 (126)
T 4gco_A           21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWS   98 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHH
Confidence            45667789999999999999999999999999997777 58999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      +|+.+|+++++++|++..++..++.++
T Consensus        99 ~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           99 KAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=4.4e-18  Score=138.03  Aligned_cols=116  Identities=14%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..|++++..+|+++.+++.+|.+++. .|++++|+++|++||+++|+++.+|..+|.++.. .|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchH
Confidence            456677899999999999999999999999999977774 7999999999999999999999999999977776 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|+.+|+++++++|+++.++..+|.++...|+++++..
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            99999999999999999999999999999998776553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=3.1e-17  Score=133.01  Aligned_cols=111  Identities=15%  Similarity=0.183  Sum_probs=101.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++++|+++.+|+.+|.++. ..|++++|+.+|++||+++|+++.++..+|.++.. +++++
T Consensus        39 ~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~  116 (150)
T 4ga2_A           39 KLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTD  116 (150)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSSS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChH
Confidence            45777899999999999999999999999999996666 58999999999999999999999999999988877 89988


Q ss_pred             HHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243          207 RAES-YFDQAVKAAPDDCYVLASHAHFLWDADED  239 (270)
Q Consensus       207 ~A~~-~~ekAL~~~P~~~~~~~~la~il~~~Ge~  239 (270)
                      +|.. ++++|++++|+++.++..++.++...|++
T Consensus       117 ~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d  150 (150)
T 4ga2_A          117 GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED  150 (150)
T ss_dssp             SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence            7665 56999999999999999999999988874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=9.9e-17  Score=162.34  Aligned_cols=120  Identities=19%  Similarity=0.171  Sum_probs=107.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|.++|++++|+.+|+++++++|+++.+++++|.++. .+|++++|+++|++||+++|+++.++.++|.++.. +|+++
T Consensus        17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~   94 (723)
T 4gyw_A           17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQ   94 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            45677889999999999999999999999999997666 47999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|++|++++|++..++.++|.+|..+|++++|....+.
T Consensus        95 ~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  136 (723)
T 4gyw_A           95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT  136 (723)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999865444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=3e-16  Score=134.01  Aligned_cols=113  Identities=13%  Similarity=0.050  Sum_probs=69.2

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH-------  202 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~-------  202 (270)
                      ...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +       
T Consensus        16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~~~~   93 (217)
T 2pl2_A           16 YALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQAEDR   93 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHTCSSH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhhhhhh
Confidence            34456666666666666666666666666664444 35666666666666666666666666666655444 5       


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          203 ----KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       203 ----g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                          |++++|+..|+++++++|+++.++..+|.++...|+++++..
T Consensus        94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence                666666666666666666666666666666666666665553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=3e-16  Score=134.04  Aligned_cols=119  Identities=14%  Similarity=-0.015  Sum_probs=105.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-----------GDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~-----------Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      ..|...|++++|+.+|+++++++|+++.++.++|.++. ..           |++++|++.|+++++++|++..++..+|
T Consensus        47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg  125 (217)
T 2pl2_A           47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG  125 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34556789999999999999999999999999996666 57           9999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .++.. .|++++|+.+|+++++++ +++.++..+|.++...|+++++....+.
T Consensus       126 ~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  176 (217)
T 2pl2_A          126 LVYAL-LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK  176 (217)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHH-cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            77777 999999999999999999 8999999999999999999998865443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.66  E-value=3.6e-17  Score=134.65  Aligned_cols=110  Identities=8%  Similarity=0.010  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA  215 (270)
                      -.+...|+++++++|+++.+++.+|..++. .|++++|+++|+++++++|+++.+|.++|.++.. +|++++|+.+|+++
T Consensus        19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMDDIYSYAYDFYN-KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVA   96 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHH
Confidence            333445666777888888888888866664 7888888888888888888888888888866666 88888888888888


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          216 VKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       216 L~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      ++++|+++.+++++|.+|..+|++++|....+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~  128 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFE  128 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888888888888888876533

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=4.6e-16  Score=132.03  Aligned_cols=111  Identities=13%  Similarity=0.141  Sum_probs=102.1

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSN----------------YARFLKEARGDLLKAEEYCARAILMSPNDGNVLS  192 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~----------------lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~  192 (270)
                      +...|++++|+.+|+++++++|+++.+++.                +|.++. ..|++++|+++|+++|+++|++..++.
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~   92 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLE   92 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            345689999999999999999999999999                997766 589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE  241 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee  241 (270)
                      .+|.++.. .|++++|+.+|+++++++|+++.+++.+|.+|+..++.+.
T Consensus        93 ~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           93 ACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence            99988887 9999999999999999999999999999999988775443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=1.4e-15  Score=123.39  Aligned_cols=108  Identities=19%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|+++|+++|++..+|+++|.+++. +|+++
T Consensus        19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~   96 (164)
T 3sz7_A           19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYK   96 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHH
Confidence            34556789999999999999999999999999997777 48999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      +|+.+|+++++++|++..+++..+......
T Consensus        97 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  126 (164)
T 3sz7_A           97 GAKEAYEKGIEAEGNGGSDAMKRGLETTKR  126 (164)
T ss_dssp             HHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            999999999999999988766666555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.65  E-value=1.1e-15  Score=124.96  Aligned_cols=117  Identities=13%  Similarity=0.089  Sum_probs=77.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------------------
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------------------  187 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------------------  187 (270)
                      ..|...|++++|+.+|+++++++|+++.++..+|.++. ..|++++|++.+++++..+|++                   
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (184)
T 3vtx_A           13 DKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQA   91 (184)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHH
Confidence            44566788899999999999999888888888886555 3566666555555555555544                   


Q ss_pred             ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          188 ---------------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       188 ---------------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                                     ..++..+|.++.. +|++++|+.+|+++++++|+++.++.++|.++..+|++++|...
T Consensus        92 a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           92 AIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence                           4445555544444 56666666666666666666666666666666666666666544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.7e-15  Score=116.04  Aligned_cols=107  Identities=17%  Similarity=0.004  Sum_probs=98.3

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++++|+++.++.++|.++. ..|++++|++.|+++++++|++..++..+|.++.. +|++++
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~   90 (126)
T 3upv_A           13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYAS   90 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHH
Confidence            4456789999999999999999999999999997777 58999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 024243          208 AESYFDQAVKAA------PDDCYVLASHAHFLWDA  236 (270)
Q Consensus       208 A~~~~ekAL~~~------P~~~~~~~~la~il~~~  236 (270)
                      |+.+|+++++++      |++..++..+..+...+
T Consensus        91 A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           91 ALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999      99999999998877543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.64  E-value=1.5e-15  Score=153.81  Aligned_cols=116  Identities=20%  Similarity=0.142  Sum_probs=109.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++++|+++.+++++|.++. .+|++++|+++|++||+++|++..++.++|.++.. +|+++
T Consensus        51 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~  128 (723)
T 4gyw_A           51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIP  128 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            45667899999999999999999999999999997777 48999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|+.+|++|++++|+++.++.+++.++..+++++++++
T Consensus       129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A          129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            99999999999999999999999999999999988874

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.64  E-value=6.9e-15  Score=111.24  Aligned_cols=110  Identities=19%  Similarity=0.237  Sum_probs=102.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus        21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   98 (131)
T 2vyi_A           21 EQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVE   98 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHH
Confidence            3455789999999999999999999999999997776 58999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADED  239 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~  239 (270)
                      |+.+|+++++.+|++..++..++.++...|++
T Consensus        99 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           99 AVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.63  E-value=3.5e-15  Score=126.30  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=110.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      ..|...|++++|+.+|+++++++| .+..+++.+|.++. ..|++++|+++|++|++++|++..++..+|.++.. +|++
T Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~   92 (228)
T 4i17_A           15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNN   92 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccH
Confidence            445667899999999999999999 99999999997766 58999999999999999999999999999988877 9999


Q ss_pred             HHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          206 SRAESYFDQAVKAAPDDC-------YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~-------~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++|+.+|+++++++|+++       .++..+|.++...|++++|....+.
T Consensus        93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  142 (228)
T 4i17_A           93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH  142 (228)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence            999999999999999999       6699999999999999999976554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.63  E-value=3.2e-15  Score=122.87  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=87.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...|++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+|+++|.++.. +|++++
T Consensus        45 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~e  122 (151)
T 3gyz_A           45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPLK  122 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHH
Confidence            3455789999999999999999999999999997776 58999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCH
Q 024243          208 AESYFDQAVKAAPDDC  223 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~  223 (270)
                      |+.+|++++++.|+.+
T Consensus       123 A~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          123 AKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHhCCCHH
Confidence            9999999999999765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.63  E-value=6.8e-16  Score=122.00  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=94.2

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243          144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       144 kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~  223 (270)
                      ++..+||+.+.++.++|..++. .|+|++|+++|++||+++|+++.+|.++|.+++. +|++++|+..|+++++++|++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence            4556899999999999988885 8999999999999999999999999999977777 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          224 YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       224 ~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+++.+|.++..+|++++|....+.
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYED  106 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999999999976554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=4e-15  Score=113.67  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=101.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~  101 (133)
T 2lni_A           24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYT  101 (133)
T ss_dssp             HHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHH
Confidence            34456789999999999999999999999999996666 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      +|+.+|+++++.+|++..++..++.++..+|+
T Consensus       102 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999988764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=1.3e-15  Score=123.47  Aligned_cols=103  Identities=12%  Similarity=-0.035  Sum_probs=62.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024243          141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (270)
Q Consensus       141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P  220 (270)
                      .|+++++++|++..+++.+|..++. .|++++|+++|+++++++|+++.+|..+|.++.. .|++++|+.+|+++++++|
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence            4555666666666666666644443 5666666666666666666666666666654444 6666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          221 DDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       221 ~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +++.+++++|.++..+|+.++|...
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~  111 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESG  111 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666666666666666666543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=1e-15  Score=143.83  Aligned_cols=120  Identities=11%  Similarity=0.062  Sum_probs=109.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd-~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      ..|...+++++|+..|+++|+++|++..+|+++|.++. ..|+ +++|+++|++||+++|++..+|+++|.++.. +|++
T Consensus       105 ~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~  182 (382)
T 2h6f_A          105 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDP  182 (382)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCH
Confidence            34456689999999999999999999999999997776 4786 9999999999999999999999999977777 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++|+.+|++|++++|++..+|+++|.++..+|+++++....+.
T Consensus       183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~  225 (382)
T 2h6f_A          183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  225 (382)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            9999999999999999999999999999999999988865444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.62  E-value=1.7e-14  Score=117.84  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=87.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..+...++++.|+..++++++++|++..++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++.. +|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHH
Confidence            34456789999999999999999999999999997766 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 024243          207 RAESYFDQAVKAAPDDCY  224 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~  224 (270)
                      +|+.+|++|++++|+++.
T Consensus       159 ~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHhCCccCHH
Confidence            999999999999997643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=3.7e-15  Score=118.65  Aligned_cols=103  Identities=17%  Similarity=-0.012  Sum_probs=68.7

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...|++++|+.+|+++++.+|+++.+|..+|.++. ..|++++|+++|++|++++|+++.+++.+|.++.. +|++++|+
T Consensus        29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~  106 (142)
T 2xcb_A           29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAE  106 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence            34567777777777777777777777777775555 36777777777777777777777777777755555 77777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      .+|+++++++|+++........+..
T Consensus       107 ~~~~~al~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A          107 SGFYSARALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHHH
Confidence            7777777777766555544444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.60  E-value=5.8e-15  Score=119.57  Aligned_cols=102  Identities=11%  Similarity=0.007  Sum_probs=91.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...|++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. +|++++
T Consensus        30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~~  107 (148)
T 2vgx_A           30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELAE  107 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHH
Confidence            4456789999999999999999999999999997776 58999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      |+.+|+++++++|+++........
T Consensus       108 A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A          108 AESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHHHHCcCCCcchHHHHH
Confidence            999999999999987765444333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.59  E-value=4.9e-14  Score=105.63  Aligned_cols=108  Identities=20%  Similarity=0.296  Sum_probs=100.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+.+|+++++++|++..++..++.++.. .+++++
T Consensus        18 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~   95 (125)
T 1na0_A           18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDE   95 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHH
Confidence            4556789999999999999999999999999997776 48999999999999999999999999999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      |+.+|+++++.+|++..++..++.++...|
T Consensus        96 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           96 AIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999987654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.59  E-value=4.5e-15  Score=121.07  Aligned_cols=118  Identities=9%  Similarity=0.127  Sum_probs=104.6

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SR  207 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~--e~  207 (270)
                      ...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.+++...+++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45679999999999999999999999999997776 5899999999999999999999999999998834448998  99


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+|+++++.+|++..+++.+|.+++..|+++++....+.
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  140 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK  140 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999976554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.59  E-value=2.8e-14  Score=113.24  Aligned_cols=115  Identities=13%  Similarity=-0.006  Sum_probs=102.9

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|++++
T Consensus        22 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~   99 (166)
T 1a17_A           22 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRA   99 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHH
Confidence            3456789999999999999999999999999997766 58999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHh
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHF--LWDADEDEEDEQ  244 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~i--l~~~Ge~eea~~  244 (270)
                      |+.+|+++++++|++..++..++.+  +...|+++++..
T Consensus       100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A          100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888555544  778888888764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.59  E-value=1.1e-14  Score=133.19  Aligned_cols=112  Identities=17%  Similarity=0.092  Sum_probs=104.7

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY  194 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n---------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~l  194 (270)
                      ...+++++|+.+|+++++++|++               ..+++++|.++. ..|++++|+++|++||+++|++..+++++
T Consensus       158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~l  236 (336)
T 1p5q_A          158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRR  236 (336)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34589999999999999999999               699999997776 58999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      |.++.. +|++++|+.+|+++++++|++..++..++.++..+++.++++
T Consensus       237 g~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          237 GEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            987777 999999999999999999999999999999999999988774

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=4.8e-14  Score=106.38  Aligned_cols=117  Identities=19%  Similarity=0.274  Sum_probs=107.9

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|++..++..+|..+. ..|++++|+++|+++++.+|++..++..++.++.. .|++++
T Consensus        10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~   87 (136)
T 2fo7_A           10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDE   87 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHH
Confidence            3445689999999999999999999999999997776 47999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |+.+++++++..|++..++..++.++...|+.+++....
T Consensus        88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence            999999999999999999999999999999999998654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=7.5e-15  Score=116.86  Aligned_cols=107  Identities=7%  Similarity=-0.124  Sum_probs=96.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243          140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (270)
Q Consensus       140 ~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~  219 (270)
                      ..|+++++++|++..+++.+|..++ ..|++++|+++|+++++++|+++.+|..+|.++.. .|++++|+.+|+++++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            5788899999999999999997777 48999999999999999999999999999977777 999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          220 PDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       220 P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+++.+++.+|.++..+|+++++....+.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYS  111 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999865443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=5.3e-15  Score=119.65  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             cccccCCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA------------------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG  188 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel------------------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~  188 (270)
                      ..|...|++++|+.+|++++++                  +|.+..+++++|.++. ..|++++|+.+|++||+++|+++
T Consensus        19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~   97 (162)
T 3rkv_A           19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNE   97 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcch
Confidence            3445678999999999999999                  7888899999997776 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 024243          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC-YVLASHAHFLWDADE  238 (270)
Q Consensus       189 ~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~-~~~~~la~il~~~Ge  238 (270)
                      .+++.+|.++.. +|++++|+.+|+++++++|++. .+...+..+.....+
T Consensus        98 ~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           98 KALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999987777 9999999999999999999998 777777777765543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.57  E-value=5.9e-14  Score=104.40  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=96.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus        13 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~   90 (118)
T 1elw_A           13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEE   90 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHH
Confidence            3456789999999999999999999999999997776 48999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      |+.+|+++++.+|+++.++..++.+.
T Consensus        91 A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           91 AKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999988775

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.57  E-value=9e-14  Score=110.96  Aligned_cols=118  Identities=13%  Similarity=-0.029  Sum_probs=107.9

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++.+|++..++..+|.++.. .|++++
T Consensus        51 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~  128 (186)
T 3as5_A           51 AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDE  128 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHH
Confidence            4456789999999999999999999999999997766 47999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      |+.+|+++++.+|++..++..++.++...|+.+++....+
T Consensus       129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A          129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999986543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.57  E-value=2.6e-14  Score=112.63  Aligned_cols=101  Identities=17%  Similarity=0.262  Sum_probs=86.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------NVLSMYGDLIW  199 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-------~al~~lA~ll~  199 (270)
                      ..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|++.|++||+++|++.       .++.++|.++.
T Consensus        16 ~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999999997776 48999999999999999998763       57888886666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          200 QSHKDASRAESYFDQAVKAAPDDCYVLASHA  230 (270)
Q Consensus       200 ~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la  230 (270)
                      . ++++++|+.+|+++++.+|+ +.+...+.
T Consensus        95 ~-~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           95 K-QNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             H-TTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             H-cCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            6 99999999999999999884 55554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=3.7e-15  Score=126.21  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=102.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------NVLSMYGDLIW  199 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-------~al~~lA~ll~  199 (270)
                      ..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++.       .++..+|.++.
T Consensus        50 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  128 (228)
T 4i17_A           50 VCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence            45566789999999999999999999999999997776 58999999999999999999999       66999997777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCc
Q 024243          200 QSHKDASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADED  239 (270)
Q Consensus       200 ~~~g~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~  239 (270)
                      . .|++++|+.+|+++++++|+  +..++..+|.+++..|+.
T Consensus       129 ~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          129 Q-AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             H-TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            7 99999999999999999999  999999999999999887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.56  E-value=1.2e-14  Score=113.74  Aligned_cols=94  Identities=12%  Similarity=-0.015  Sum_probs=76.9

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      +...|++++|+..|+++++.+|+++.+|+.+|.++. ..|++++|+++|++|++++|++..++..+|.++.. .|++++|
T Consensus        27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A  104 (121)
T 1hxi_A           27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAA  104 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            345689999999999999999999999999996666 47999999999999999999999999999976666 8999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 024243          209 ESYFDQAVKAAPDDCY  224 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~  224 (270)
                      +.+|+++++++|++..
T Consensus       105 ~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          105 LASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHC-------
T ss_pred             HHHHHHHHHhCcCCCC
Confidence            9999999999987653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=1.4e-14  Score=136.06  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=102.4

Q ss_pred             cccCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          129 DPNNHG-NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       129 Ye~~gd-~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      |...++ +++|+.+|+++++++|++..+|+++|.++. ..|++++|+++|++||+++|++..+|.++|.++.. +|++++
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~e  218 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDN  218 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTT
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHH
Confidence            344565 999999999999999999999999997666 58999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWD-ADEDEED  242 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~-~Ge~eea  242 (270)
                      |+.+|+++++++|++..+|.+++.++.. .+..+++
T Consensus       219 Al~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          219 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            9999999999999999999999999999 5554665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.56  E-value=2.9e-14  Score=118.98  Aligned_cols=114  Identities=13%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~----------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al  191 (270)
                      .|...+++++|+.+|++++++.|.++                .++.++|.++. ..|++++|+++|+++++++|++..++
T Consensus        47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~  125 (198)
T 2fbn_A           47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKAL  125 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHH
Confidence            34456899999999999999999998                89999997776 58999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      +.+|.+++. +|++++|+.+|+++++++|++..++..++.++..+++.++++
T Consensus       126 ~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          126 YKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999987777 999999999999999999999999999999999888766665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.55  E-value=3.1e-14  Score=136.79  Aligned_cols=120  Identities=13%  Similarity=-0.001  Sum_probs=106.2

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      +..|...+++++|+.+|+++++++|+++.++.++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. +|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            345667889999999999999999999999999997776 58999999999999999999999999999977777 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHhccC
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHF--LWDADEDEEDEQVGE  247 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~i--l~~~Ge~eea~~~~e  247 (270)
                      ++|+.+|+++++++|++..++..++.+  +..+|++++|....+
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999988  888888888776544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=8.5e-14  Score=125.15  Aligned_cols=119  Identities=11%  Similarity=0.073  Sum_probs=108.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ..|...|++++|+.+|+++++++|+  ++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|+
T Consensus       185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~  262 (365)
T 4eqf_A          185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDR  262 (365)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Confidence            4566788999999999999999999  9999999997776 58999999999999999999999999999987777 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +++|+.+|+++++++|++..++..+|.++..+|+++++....+
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  305 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL  305 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999986543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.55  E-value=8.8e-15  Score=112.70  Aligned_cols=106  Identities=16%  Similarity=0.177  Sum_probs=91.8

Q ss_pred             CCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          132 NHGNNSTDLYYQKMIQA---DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       132 ~gd~~eA~~~y~kALel---dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      .|++++|+.+|++++++   +|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            46899999999999999   6999999999997777 58999999999999999999999999999977777 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADED  239 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~  239 (270)
                      +.+|+++++.+|+++.+......+....+..
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877666666555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.55  E-value=3.2e-14  Score=110.37  Aligned_cols=107  Identities=12%  Similarity=0.030  Sum_probs=92.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus        18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~   95 (137)
T 3q49_B           18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDE   95 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHH
Confidence            3456789999999999999999999999999996666 48999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 024243          208 AESYFDQAVKAAPD-----DCYVLASHAHFLWDA  236 (270)
Q Consensus       208 A~~~~ekAL~~~P~-----~~~~~~~la~il~~~  236 (270)
                      |+.+|+++++++|+     +..+...+..+....
T Consensus        96 A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987     677777766665443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1.1e-14  Score=145.44  Aligned_cols=127  Identities=9%  Similarity=-0.074  Sum_probs=115.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+..|+++++++|+++.+++++|.++. ..|++++|++.|++|++++|++..++.++|.++.. +|+++
T Consensus       441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~  518 (681)
T 2pzi_A          441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTD  518 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCC
T ss_pred             HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChH
Confidence            34455689999999999999999999999999997777 58999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF  256 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f  256 (270)
                      + +.+|++|++++|++..+++++|.++..+|++++|....+.....+|.+
T Consensus       519 ~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          519 E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence            9 999999999999999999999999999999999998777755555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=2.5e-13  Score=114.02  Aligned_cols=117  Identities=13%  Similarity=0.135  Sum_probs=90.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~  143 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKL  143 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHH
Confidence            3445667888888888888888888888888885555 46888888888888888888888888888866666 788888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |+.+|+++++.+|++..++..++.++...|+++++....
T Consensus       144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888888888888888888888888877777543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=9.6e-14  Score=108.04  Aligned_cols=106  Identities=15%  Similarity=0.020  Sum_probs=96.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g  203 (270)
                      ..|...+++++|+.+|+++++.+|++   ..++.++|.++. ..|++++|+++|+++++++|++..+++.+|.+++. ++
T Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~  113 (148)
T 2dba_A           36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LG  113 (148)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cC
Confidence            34456789999999999999999998   899999997666 58999999999999999999999999999987777 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      ++++|+.+|+++++++|++..++..++.+..
T Consensus       114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          114 RLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999999999999999999999988887753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=5.1e-14  Score=127.88  Aligned_cols=113  Identities=18%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..|++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|+++++++|++..++..++.++.. .|++++|+.
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  326 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVR  326 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3445555555555555555555555555553333 24555555555555555555555555555544433 555555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+++++.+|++..++..++.++...|+++++...
T Consensus       327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  361 (388)
T 1w3b_A          327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555555555555555555555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=3.2e-13  Score=103.60  Aligned_cols=109  Identities=11%  Similarity=0.019  Sum_probs=96.3

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS  201 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~  201 (270)
                      .+...|++++|+..|+++++.+|+++   .+++.+|.+++ ..|++++|+++|+++++.+|++   +.+++.+|.+++. 
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-   88 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-   88 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-
T ss_pred             HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-
Confidence            34567899999999999999999998   89999997777 4899999999999999999999   8999999987777 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      +|++++|+.+|+++++.+|+++.+......+....++
T Consensus        89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           89 EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999999999888877766655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=2.1e-13  Score=114.42  Aligned_cols=120  Identities=14%  Similarity=0.073  Sum_probs=110.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.+++. .|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHH
Confidence            44566789999999999999999999999999997666 58999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++.+|++..++..++.++...|+.+++....+.
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999865444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.4e-13  Score=116.07  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=106.0

Q ss_pred             ccccCCChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQ--------------------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI  181 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALe--------------------------ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAI  181 (270)
                      .|...+++++|+.+|+++++                          .+|.++.++..+|.++. ..|++++|+++|++++
T Consensus        88 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~  166 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEMI  166 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence            44556788888888888888                          77888899999997776 5899999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          182 LMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       182 eldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +++|++..++..+|.++.. .|++++|+.+|+++++.+|++..++..++.++...|+.+++....+
T Consensus       167 ~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          167 KRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999987777 9999999999999999999999999999999999999999986543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=1e-13  Score=110.67  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=109.6

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|.+..++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus        17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~   94 (186)
T 3as5_A           17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDL   94 (186)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHH
Confidence            4455689999999999999999999999999997776 48999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus        95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999865433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.52  E-value=1.3e-13  Score=125.25  Aligned_cols=120  Identities=15%  Similarity=0.167  Sum_probs=98.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..++.++.. .|+++
T Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~  288 (388)
T 1w3b_A          211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVA  288 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34455678888888888888888888888888886666 47888888888888888888888888888876666 88888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++.+|++..++..++.++...|+.+++....+.
T Consensus       289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888888888888888888888888888888888765444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=4.7e-14  Score=134.42  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=102.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS  192 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n---------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~  192 (270)
                      .|...+++++|+.+|+++++++|++               ..+++++|.++. ..|++++|+++|++||+++|++..+++
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~  355 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLY  355 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHH
Confidence            3445689999999999999999999               699999997777 589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++|.+++. ++++++|+.+|++|++++|++..++..++.++..+++.++++.
T Consensus       356 ~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          356 RRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987777 9999999999999999999999999999999999999887764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=9.8e-14  Score=115.97  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=88.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd----------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~  200 (270)
                      +.+.+++|+..|+++++++|+++.+|+++|.++.. .++          +++|+..|++||+++|++.++|+++|.++..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            34689999999999999999999999999987775 565          4699999999999999999999999988776


Q ss_pred             Hc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          201 SH-----------KDASRAESYFDQAVKAAPDDCYVLASHAHF  232 (270)
Q Consensus       201 ~~-----------g~~e~A~~~~ekAL~~~P~~~~~~~~la~i  232 (270)
                       +           +++++|+.+|++|++++|++..++..+..+
T Consensus        93 -lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           93 -FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             -HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence             5           489999999999999999998776665543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=1.1e-13  Score=118.66  Aligned_cols=119  Identities=12%  Similarity=0.089  Sum_probs=106.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHc
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSH  202 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----~al~~lA~ll~~~~  202 (270)
                      ..|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++ .|.++    .++..+|.++.. .
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~   87 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-K   87 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-c
Confidence            34566789999999999999999999999999997666 58999999999999999 54443    458999977777 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |++++|+.+|+++++.+|++..++..+|.++...|+++++....+.
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  133 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK  133 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=2.1e-13  Score=121.76  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=94.6

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g  203 (270)
                      +.++ ..+++++|+.+|+++++.+|+  ++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|
T Consensus       189 ~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g  265 (368)
T 1fch_A          189 GSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN  265 (368)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC
Confidence            3444 667888888888888888888  7888888886665 47888888888888888888888888888876666 88


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      ++++|+.+|+++++++|++..++..+|.++...|+++++...
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  307 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  307 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            888888888888888888888888888888888888888754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.50  E-value=2.1e-13  Score=119.12  Aligned_cols=126  Identities=12%  Similarity=0.114  Sum_probs=100.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS---------PNDGNVLSMYGDLI  198 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---------P~n~~al~~lA~ll  198 (270)
                      .|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|++++++.         |.+..++..+|.++
T Consensus       168 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~  246 (330)
T 3hym_B          168 EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC  246 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence            4455678888888888888888888888888886666 4788888888888888876         66778888888776


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          199 WQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       199 ~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      .. .|++++|+.+|+++++++|++..++..++.++...|+.+++....+......|.
T Consensus       247 ~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          247 RK-LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HH-hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            66 888888888888888888888888888888888888888888766554334443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.50  E-value=1.2e-13  Score=114.88  Aligned_cols=116  Identities=15%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|++++  +| ++.+++++|.++. ..|++++|+++|+++++++|++..++.++|.++.. .|++++
T Consensus        15 ~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~   89 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDL   89 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHH
Confidence            3456789999999999996  44 7899999997766 58999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVKAAPDDC----------------YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~----------------~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+|+++++..|++.                .+++++|.++..+|+++++....+.
T Consensus        90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999888876                9999999999999999999865433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.49  E-value=1.6e-14  Score=118.77  Aligned_cols=127  Identities=15%  Similarity=-0.002  Sum_probs=104.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .+...|++++|+..|+++++.+|+++.+++.+|.++. ..|++++|+++|+++++++| ++.++..++.+.+....+..+
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~   92 (176)
T 2r5s_A           15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESP   92 (176)
T ss_dssp             HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccch
Confidence            3455789999999999999999999999999997766 58999999999999999999 888777766554432334456


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF  256 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f  256 (270)
                      |+..|+++++.+|+++.+++.+|.++...|+++++....+.....+|.+
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            8999999999999999999999999999999999987655533334443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=2.1e-13  Score=115.79  Aligned_cols=120  Identities=22%  Similarity=0.261  Sum_probs=107.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe--ldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++  .+|.+..++..+|.+++. .|+
T Consensus        79 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~  156 (252)
T 2ho1_A           79 VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MKK  156 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cCC
Confidence            34556789999999999999999999999999996666 48999999999999999  889999999999977777 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  200 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL  200 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999866544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=2e-13  Score=116.72  Aligned_cols=114  Identities=15%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             cCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          131 NNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALel----dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .++++++|+.+|+++++.    +|.++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence            345777777777777776    3455667777775555 36777777777777777777777777777766655 77777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|+.+|+++++++|++..++..+|.++...|+++++....
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  134 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL  134 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH
Confidence            7777777777777777777777777777777777776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.49  E-value=4.9e-13  Score=110.36  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH-KDASRA  208 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~-g~~e~A  208 (270)
                      ...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. . |++++|
T Consensus        19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~A   96 (225)
T 2vq2_A           19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAES   96 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHHHH
Confidence            33455556666666666655555555555554444 34555566655666555555555555555544444 5 555555


Q ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          209 ESYFDQAVK--AAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       209 ~~~~ekAL~--~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +.+|+++++  .+|.+..++..++.++...|+.+++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555  444445555555555555555555553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.49  E-value=2.8e-13  Score=130.90  Aligned_cols=117  Identities=12%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|++|++++|++..++.++|.++.. +|++++
T Consensus        32 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~  109 (568)
T 2vsy_A           32 AELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEA  109 (568)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHH
Confidence            4455689999999999999999999999999997776 58999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCcHHHHhcc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDA---DEDEEDEQVG  246 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~---Ge~eea~~~~  246 (270)
                      |+.+|+++++.+|++..++..++.++..+   |+.+++....
T Consensus       110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~  151 (568)
T 2vsy_A          110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV  151 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            99999999999999999999999999999   9988887643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=5.3e-13  Score=116.40  Aligned_cols=113  Identities=12%  Similarity=0.172  Sum_probs=63.8

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  226 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEAL  226 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHH
Confidence            33445555555555555555555555555554444 34555555555555555555555555555544444 55555555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      .+|+++++.+|++..++..++.++...|+++++..
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            55555555555555555555555555555555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.48  E-value=2.9e-13  Score=102.44  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=97.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMYGDLIWQ  200 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------~~al~~lA~ll~~  200 (270)
                      .|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++       ..++..+|.++..
T Consensus        13 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~   91 (131)
T 1elr_A           13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK   91 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence            4556789999999999999999999999999997776 4899999999999999999987       9999999977777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       201 ~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                       .|++++|+.+|+++++.+| ++.++..++.+....++
T Consensus        92 -~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           92 -EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             -TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             -hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence             9999999999999999999 68888888888766544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.48  E-value=7e-13  Score=115.62  Aligned_cols=110  Identities=10%  Similarity=-0.010  Sum_probs=92.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHH
Confidence            34566799999999999999999999999999997777 48999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHcCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLAS-----HAHFLWDADE  238 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~-----la~il~~~Ge  238 (270)
                      +|+.+|+++++.+|++......     ...++...+.
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~  294 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM  294 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence            9999999999999975333222     4555555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.48  E-value=5.5e-13  Score=110.10  Aligned_cols=118  Identities=15%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-GDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~-Gd~~eA~e~~ekAIe--ldP~n~~al~~lA~ll~~~~g~  204 (270)
                      .|...+++++|+.+|+++++.+|++..++..+|.++. .. |++++|+++|+++++  .+|.+..++..+|.++.. .|+
T Consensus        51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  128 (225)
T 2vq2_A           51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQ  128 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCC
Confidence            4456688999999999999999999999999996666 58 999999999999999  667778899999977776 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +++|+.+|+++++.+|++..++..++.++...|+++++....+
T Consensus       129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  171 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK  171 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999988886543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=3.3e-13  Score=114.58  Aligned_cols=119  Identities=14%  Similarity=0.178  Sum_probs=108.9

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus        46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~  123 (252)
T 2ho1_A           46 GYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEE  123 (252)
T ss_dssp             HHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHH
Confidence            3445689999999999999999999999999997776 48999999999999999999999999999988777 999999


Q ss_pred             HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          208 AESYFDQAVK--AAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       208 A~~~~ekAL~--~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |+.+|+++++  .+|.+..++..++.++...|+.+++....+.
T Consensus       124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  166 (252)
T 2ho1_A          124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK  166 (252)
T ss_dssp             HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999  8899999999999999999999999865443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.48  E-value=5.8e-13  Score=102.72  Aligned_cols=97  Identities=11%  Similarity=-0.001  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                      |..+..+..+|..++ ..|++++|+++|+++|+++|+++.++.++|.+++. +|++++|+.+|+++++++|++..+++.+
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            445778899997777 48999999999999999999999999999987777 9999999999999999999999999999


Q ss_pred             HHHHHHcCCcHHHHhccCC
Q 024243          230 AHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       230 a~il~~~Ge~eea~~~~e~  248 (270)
                      |.++..+|+++++....+.
T Consensus        79 g~~~~~~~~~~~A~~~~~~   97 (126)
T 3upv_A           79 ATAQIAVKEYASALETLDA   97 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHH
Confidence            9999999999999865443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.48  E-value=1.4e-13  Score=128.31  Aligned_cols=116  Identities=16%  Similarity=0.112  Sum_probs=106.7

Q ss_pred             ccccCCChHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQ----------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALe----------------ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al  191 (270)
                      .|...+++++|+.+|+++++                .+|.+..++.++|.+++ ..|++++|+++|++||+++|+++.++
T Consensus       232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~  310 (370)
T 1ihg_A          232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKAL  310 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHH
Confidence            34456899999999999999                88899999999997776 58999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +.+|.+++. ++++++|+.+|++|++++|++..++..++.++..+++.++++..
T Consensus       311 ~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          311 YRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987777 99999999999999999999999999999999999988887754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.48  E-value=2e-13  Score=122.77  Aligned_cols=120  Identities=15%  Similarity=-0.029  Sum_probs=108.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCHH
Confidence            45566789999999999999999999999999997776 58999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPD------------DCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~------------~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++++|+            +..++..++.++...|+.+.+....+.
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999999987            367899999999999999988866443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=1.5e-13  Score=131.26  Aligned_cols=119  Identities=10%  Similarity=0.010  Sum_probs=108.1

Q ss_pred             cccccCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 024243          127 SWDPNNHGN-NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH---  202 (270)
Q Consensus       127 ~~Ye~~gd~-~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~---  202 (270)
                      ..|...+++ ++|+.+|+++++++|+++.+|+.+|.++. ..|++++|+++|++|++++|+ ..++..+|.++.. .   
T Consensus       110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~  186 (474)
T 4abn_A          110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTD  186 (474)
T ss_dssp             HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCS
T ss_pred             HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccC
Confidence            344557899 99999999999999999999999997777 489999999999999999998 7999999977776 8   


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCcHHHHhccCC
Q 024243          203 ------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDA--------DEDEEDEQVGEE  248 (270)
Q Consensus       203 ------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~--------Ge~eea~~~~e~  248 (270)
                            |++++|+.+|+++++++|+++.++..+|.+|...        |++++|....+.
T Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence                  9999999999999999999999999999999999        889988865443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.46  E-value=2.5e-13  Score=129.73  Aligned_cols=110  Identities=11%  Similarity=-0.134  Sum_probs=104.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--------GDLLKAEEYCARAILMSP---NDGNVLSMYGDLIWQS  201 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~--------Gd~~eA~e~~ekAIeldP---~n~~al~~lA~ll~~~  201 (270)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..        |++++|+++|++|++++|   +++.++.++|.+++. 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence            89999999999999999999999999997776 47        999999999999999999   999999999987777 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|++++|+.+|+++++++|++..++..++.++..+|+.+++..
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.46  E-value=5.9e-13  Score=118.77  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=88.2

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      +..|...|++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|++
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~  301 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAH  301 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCH
Confidence            455677899999999999999999999999999997776 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 024243          206 SRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~  223 (270)
                      ++|+.+|+++++++|++.
T Consensus       302 ~~A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          302 REAVEHFLEALNMQRKSR  319 (368)
T ss_dssp             HHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhCCCCC
Confidence            999999999999999774

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.46  E-value=6.5e-13  Score=115.97  Aligned_cols=117  Identities=15%  Similarity=0.090  Sum_probs=103.3

Q ss_pred             ccccCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          128 WDPNNH-GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       128 ~Ye~~g-d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .|...+ ++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHH
Confidence            344556 8999999999999999999999999997666 47999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|+.+|+++++.+|+++.++..++.++...|+++++....
T Consensus       177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  216 (330)
T 3hym_B          177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWF  216 (330)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHH
Confidence            9999999999999999999999999999999999888543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=1e-12  Score=112.31  Aligned_cols=116  Identities=10%  Similarity=0.043  Sum_probs=103.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.+++. .|++++
T Consensus        52 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~  129 (275)
T 1xnf_A           52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKL  129 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHH
Confidence            4456789999999999999999999999999997776 58999999999999999999999999999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |+.+|+++++++|++......++.. ...|+.+++....
T Consensus       130 A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~  167 (275)
T 1xnf_A          130 AQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL  167 (275)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence            9999999999999998777666644 5668888887554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=5.3e-13  Score=128.98  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      +++++|+.+|+++++.+|++..++..+|..+. ..|++++|+++|++|++++|++..++.++|.++.. +|++++|+.+|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            58899999999999999999999999997777 47999999999999999999999999999987777 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++++++|++..++..+|.++...|++++|....+.
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999876544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=1.6e-13  Score=114.87  Aligned_cols=103  Identities=8%  Similarity=0.016  Sum_probs=90.2

Q ss_pred             ccCCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHh-------CCCCHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPR-------NPL-----LLSNYARFLKEARGDLLKAEEYCARAILM-------SPNDGNV  190 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~-------n~~-----al~~lA~~l~~~~Gd~~eA~e~~ekAIel-------dP~n~~a  190 (270)
                      ...|++++|+..|+++|+++|+       +..     +|.++|.++. .+|+|++|+..|++||++       +|++..+
T Consensus        22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A  100 (159)
T 2hr2_A           22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKL  100 (159)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence            4568999999999999999999       444     9999997777 589999999999999999       9999999


Q ss_pred             H----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          191 L----SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       191 l----~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      |    +++|.++.. +|++++|+..|++|++++|++..+.-.+..+..
T Consensus       101 ~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~  147 (159)
T 2hr2_A          101 WISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGKERMME  147 (159)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             HHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            9    999976666 999999999999999999988766665555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.45  E-value=3.5e-13  Score=99.45  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 024243          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYVL  226 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~~  226 (270)
                      +|+++.++..+|..+. ..|++++|+.+|+++++++|++..++..+|.++.. .|++++|+.+|+++++.+|+  +..++
T Consensus         2 ~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            4555666666664444 35666666666666666666666666666655444 66666666666666666666  66666


Q ss_pred             HHHHHHHHHc-CCcHHHHhcc
Q 024243          227 ASHAHFLWDA-DEDEEDEQVG  246 (270)
Q Consensus       227 ~~la~il~~~-Ge~eea~~~~  246 (270)
                      ..++.++... |+.+++....
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHH
Confidence            6666666666 6666665443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=5.8e-13  Score=112.23  Aligned_cols=120  Identities=14%  Similarity=0.148  Sum_probs=108.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-----------------
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAIL-----------------  182 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe-----------------  182 (270)
                      ..|...+++++|+.+|+++++++|++       +.++..+|.++. ..|++++|+++|+++++                 
T Consensus        46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a  124 (258)
T 3uq3_A           46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE  124 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence            34566789999999999999999987       799999997776 58999999999999999                 


Q ss_pred             ---------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          183 ---------MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       183 ---------ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                               .+|++..++..+|.+++. .|++++|+.+|+++++.+|+++.++..+|.++...|+++++....+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          125 LKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                     777888999999988877 99999999999999999999999999999999999999999865443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.44  E-value=1.2e-12  Score=105.86  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      ++.++.+++.+|..++ ..|++++|+++|+++|+++|++..++.++|.+++. +|++++|+.+|+++++++|++..+++.
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4566888999997777 48999999999999999999999999999988877 999999999999999999999999999


Q ss_pred             HHHHHHHcCCcHHHHhccC
Q 024243          229 HAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       229 la~il~~~Ge~eea~~~~e  247 (270)
                      +|.++..+|+++++....+
T Consensus        85 lg~~~~~~g~~~~A~~~~~  103 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYE  103 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHH
Confidence            9999999999999986433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.44  E-value=4.6e-13  Score=114.73  Aligned_cols=115  Identities=15%  Similarity=0.155  Sum_probs=102.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|..++. .++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHH
Confidence            45667789999999999999999999999999997776 48999999999999999999999999999955565 67999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADE---DEEDE  243 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge---~eea~  243 (270)
                      +|+.+|+++++.+|++..++..++.++...++   .+++.
T Consensus       160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~  199 (272)
T 3u4t_A          160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK  199 (272)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence            99999999999999999999999999999987   54444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=7.7e-13  Score=97.58  Aligned_cols=94  Identities=14%  Similarity=0.042  Sum_probs=86.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-C
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSH-K  203 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~-g  203 (270)
                      ..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|+  +..++..+|.++.. . |
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~   91 (112)
T 2kck_A           14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEG   91 (112)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSS
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhC
Confidence            44566789999999999999999999999999997776 589999999999999999999  99999999977776 9 9


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 024243          204 DASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~  222 (270)
                      ++++|+.+++++++.+|.+
T Consensus        92 ~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           92 KEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CSHHHHHHHHHHGGGCCCC
T ss_pred             CHHHHHHHHHHHhhcccCC
Confidence            9999999999999999975

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.44  E-value=3.1e-12  Score=99.02  Aligned_cols=99  Identities=10%  Similarity=-0.025  Sum_probs=89.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      ..+|.++..+..+|..++ ..|++++|+++|+++++++|+++.++..+|.+++. ++++++|+.+|+++++++|+++.++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence            467889999999997777 48999999999999999999999999999987777 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcHHHHhccC
Q 024243          227 ASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~~e  247 (270)
                      +.+|.++...|+++++....+
T Consensus        81 ~~l~~~~~~~~~~~~A~~~~~  101 (137)
T 3q49_B           81 FFLGQCQLEMESYDEAIANLQ  101 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999986543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.44  E-value=2e-13  Score=115.58  Aligned_cols=120  Identities=13%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK--  203 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g--  203 (270)
                      +..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++|+++|+++.+++++|.+++. .+  
T Consensus        61 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~  138 (208)
T 3urz_A           61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL-TAEQ  138 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HhHH
Confidence            345667899999999999999999999999999997777 58999999999999999999999999999987765 43  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +.+.+...|.+++...| ...+++.+|.++...|++++|....+.
T Consensus       139 ~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~  182 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQK  182 (208)
T ss_dssp             HHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44567778888764333 344678888888889999998877655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=1.1e-12  Score=113.54  Aligned_cols=119  Identities=14%  Similarity=0.033  Sum_probs=104.0

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS-  201 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~-  201 (270)
                      |...|++++|+..|+++++.+|++   +.+++.+|.+++. .|++++|++.|+++++++|++   ..+++.+|.+++.. 
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~  103 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS  103 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence            345689999999999999999999   9999999977774 899999999999999998854   67899999555431 


Q ss_pred             ------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhccCC
Q 024243          202 ------HKDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       202 ------~g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~~e~  248 (270)
                            +|++++|+.+|+++++.+|++..+.                 +.+|.+|...|++++|....+.
T Consensus       104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A          104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                  7999999999999999999987766                 8889999999999999876444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.43  E-value=1e-12  Score=100.16  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA  215 (270)
                      ++|+..|+++++.+|+++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            36889999999999999999999997776 58999999999999999999999999999987777 99999999999999


Q ss_pred             HHhCCC--CHHHHHHHHHHHHHcCCcHH
Q 024243          216 VKAAPD--DCYVLASHAHFLWDADEDEE  241 (270)
Q Consensus       216 L~~~P~--~~~~~~~la~il~~~Ge~ee  241 (270)
                      ++++|+  +......+...+..+++...
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~~~~~  107 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLAREDA  107 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhccccC
Confidence            999884  56677777777766655433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.43  E-value=5.9e-13  Score=113.70  Aligned_cols=121  Identities=10%  Similarity=0.005  Sum_probs=98.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-----------------hCCHHHHHHHHHHHHHhCCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-----------------RGDLLKAEEYCARAILMSPN  186 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~---al~~lA~~l~~~-----------------~Gd~~eA~e~~ekAIeldP~  186 (270)
                      ..|...|++++|+..|+++++.+|+++.   +++.+|.+++..                 .|++++|++.|+++|+.+|+
T Consensus        49 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           49 YAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence            3456678999999999999999998864   677888665531                 47889999999999999998


Q ss_pred             CHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHhcc
Q 024243          187 DGNVL-----------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDDC---YVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       187 n~~al-----------------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~---~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +..++                 ..+|.+++. .|++++|+..|+++++.+|+++   .+++.++.++..+|+.+++....
T Consensus       129 ~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          129 SQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            87654                 456766666 8999999999999999999886   67999999999999999998765


Q ss_pred             CC
Q 024243          247 EE  248 (270)
Q Consensus       247 e~  248 (270)
                      +.
T Consensus       208 ~~  209 (225)
T 2yhc_A          208 KI  209 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=1.4e-12  Score=114.56  Aligned_cols=120  Identities=14%  Similarity=0.090  Sum_probs=108.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|+++
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~   88 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLD   88 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChH
Confidence            34556789999999999999999999999999997777 48999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAP---DDCYVLASH------------AHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P---~~~~~~~~l------------a~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++.+|   ++..++..+            +.++...|+++++....+.
T Consensus        89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999   899988888            7899999999999865443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.43  E-value=9.8e-13  Score=107.09  Aligned_cols=104  Identities=11%  Similarity=0.106  Sum_probs=92.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~--~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ..|...+++++|+.+|+++++++|+++.++..+|.+++...|++  ++|+++|+++++++|++..++..+|.+++. .|+
T Consensus        52 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~  130 (177)
T 2e2e_A           52 EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QAN  130 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccc
Confidence            34566789999999999999999999999999997745457998  999999999999999999999999987777 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      +++|+.+|+++++.+|++......+..
T Consensus       131 ~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          131 YAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            999999999999999988665544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.42  E-value=1.2e-12  Score=116.72  Aligned_cols=113  Identities=14%  Similarity=0.015  Sum_probs=70.7

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|+++|+++++.+|++...+...+ +.+...++.++|+
T Consensus       128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~-~~l~~~~~~~~a~  205 (287)
T 3qou_A          128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ-IELLXQAADTPEI  205 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHH-HHHHhhcccCccH
Confidence            45689999999999999999999999999997776 479999887766666555443332222222 2221234444444


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..|+++++.+|++..+++.+|.++...|++++|..
T Consensus       206 ~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~  240 (287)
T 3qou_A          206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALE  240 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence            44444444444444444444444444444444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.42  E-value=3.2e-12  Score=114.49  Aligned_cols=116  Identities=11%  Similarity=-0.081  Sum_probs=99.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL-KEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l-~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      ..|...|++++|+..|+++++.+|++.......+.+. ....|++++|+.+|+++++.+|+++.++..+|.++.. +|++
T Consensus       138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~  216 (291)
T 3mkr_A          138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRW  216 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCH
Confidence            4566789999999999999999999875544333211 1224899999999999999999999999999976666 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ++|+.+|+++++.+|+++.++.+++.++...|+.+++.
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            99999999999999999999999999999999987653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.41  E-value=8e-13  Score=103.31  Aligned_cols=99  Identities=11%  Similarity=-0.074  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      .++.+|..+. ..|++++|+..|+++++++|+++.+|+.+|.++.. .|++++|+.+|+++++++|++..+++.+|.++.
T Consensus        19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3567886666 47999999999999999999999999999977777 999999999999999999999999999999999


Q ss_pred             HcCCcHHHHhccCCCCCCCCC
Q 024243          235 DADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       235 ~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      ..|+.+++....+.....+|.
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC----
T ss_pred             HcCCHHHHHHHHHHHHHhCcC
Confidence            999999998765553333443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.41  E-value=3.5e-12  Score=119.52  Aligned_cols=118  Identities=14%  Similarity=0.143  Sum_probs=107.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.+++. .|+++
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~  361 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFT  361 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34556789999999999999999999999999997666 48999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|+.+|+++++.+|+++.++..++.++...|+++++....
T Consensus       362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999999998653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.41  E-value=2.2e-12  Score=101.46  Aligned_cols=92  Identities=11%  Similarity=0.144  Sum_probs=83.1

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD-------CY  224 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~~  224 (270)
                      .+.++.++|..++. +|+|++|+++|++||+++|+++.+|.++|.+++. +|++++|+.+|+++++++|++       ..
T Consensus         7 ~A~a~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            7 AAIAEKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            45677899988885 8999999999999999999999999999987777 999999999999999998875       35


Q ss_pred             HHHHHHHHHHHcCCcHHHHhc
Q 024243          225 VLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       225 ~~~~la~il~~~Ge~eea~~~  245 (270)
                      ++.++|.++..++++++|...
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHH
Confidence            888999999999999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.40  E-value=4.7e-13  Score=133.63  Aligned_cols=113  Identities=13%  Similarity=-0.092  Sum_probs=104.7

Q ss_pred             cCCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024243          131 NNHGNNSTDLYYQKMI--------QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (270)
Q Consensus       131 ~~gd~~eA~~~y~kAL--------eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~  202 (270)
                      ..+++++|+..|++++        +.+|++..+++.+|..+.. .|++++|++.|+++++++|++..+|+++|.+++. +
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~  480 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-T  480 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-c
Confidence            4689999999999999        9999999999999977774 7999999999999999999999999999987777 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |++++|+.+|++|++++|++..+++++|.++..+|++++ ....
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~  523 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY  523 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH
Confidence            999999999999999999999999999999999999888 6443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.40  E-value=6.2e-13  Score=118.27  Aligned_cols=131  Identities=12%  Similarity=0.028  Sum_probs=104.6

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHhCCCC------HHHHH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSPND------GNVLS  192 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~-Gd~~eA~e~~ekAIeldP~n------~~al~  192 (270)
                      |..|...|++++|+.+|++++++.|..      ..++.++|.++. .. |++++|+++|++|+++.|.+      ..++.
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  162 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            355667789999999999999998754      568889995555 55 99999999999999998865      56788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCY-------VLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ  258 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~-------~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~  258 (270)
                      ++|.++.. +|++++|+.+|++++++.|++..       ++.+++.++..+|+.++|....+....+.|.|..
T Consensus       163 ~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          163 KCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            99987777 99999999999999999987653       6788999999999999999776665555666544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.40  E-value=5.5e-14  Score=128.56  Aligned_cols=117  Identities=6%  Similarity=-0.068  Sum_probs=108.3

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---------------GNVLSMY  194 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---------------~~al~~l  194 (270)
                      ...+++++|+..|+++++.+|+++.++.++|..++. .|++++|+++|++||+++|++               ..++.++
T Consensus       124 ~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          124 LHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999977774 899999999999999999999               6999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      |.+++. +|++++|+.+|+++++++|++..+++++|.+|..+|++++|....+.
T Consensus       203 a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  255 (336)
T 1p5q_A          203 AMCHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK  255 (336)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            977777 99999999999999999999999999999999999999999876544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.40  E-value=1.5e-12  Score=114.36  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=95.6

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC---CCHHHHHHH----------
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP---NDGNVLSMY----------  194 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP---~n~~al~~l----------  194 (270)
                      .|...|++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++++|   ++..++..+          
T Consensus        46 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (359)
T 3ieg_A           46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR  124 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence            3455678888888888888888888888888886666 47888888888888888888   888887777          


Q ss_pred             --HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          195 --GDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       195 --A~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                        |.++.. .|++++|+.+|+++++.+|+++.++..++.++...|+++++....+.
T Consensus       125 ~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  179 (359)
T 3ieg_A          125 SQALDAFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA  179 (359)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              455555 88888888888888888888888888888888888888888765444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.7e-12  Score=96.65  Aligned_cols=101  Identities=8%  Similarity=-0.085  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD------CYV  225 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~  225 (270)
                      ++.++..+|..++ ..|++++|+++|++|++++|+++.++.++|.+++. +|++++|+.+|+++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            4677889997776 58999999999999999999999999999987777 999999999999999999999      899


Q ss_pred             HHHHHHHHHHcCCcHHHHhccCCCCCCCCCCC
Q 024243          226 LASHAHFLWDADEDEEDEQVGEEPAPPSYNFQ  257 (270)
Q Consensus       226 ~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~  257 (270)
                      ++.++.++..+|+.+++...   ...+++.|.
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~  109 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVE---VDELPEGYD  109 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSS---SSSCSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhH---HHHhHHHhc
Confidence            99999999999877666543   444455553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.39  E-value=4.6e-13  Score=122.64  Aligned_cols=110  Identities=15%  Similarity=0.007  Sum_probs=81.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNP-----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN  189 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~-----------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~  189 (270)
                      ..|...+++++|+.+|+++++++|++.                 .+++++|.++. ..|++++|+++|++||+++|++..
T Consensus       187 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~  265 (338)
T 2if4_A          187 NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPK  265 (338)
T ss_dssp             HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH
Confidence            344567899999999999999999987                 48999996666 589999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       190 al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      +|+++|.++.. +|++++|+.+|+++++++|++..++..++.+......
T Consensus       266 a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          266 ALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHTTC---------------------
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            99999977777 9999999999999999999999999999988655444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=1.9e-12  Score=115.57  Aligned_cols=122  Identities=14%  Similarity=0.173  Sum_probs=104.2

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~-al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      +.++...|++++|+..|+++++++|+++. +|.+++.++. ..|++++|.+.|++|++.+|.+..++..++.+.+...|+
T Consensus       106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  184 (308)
T 2ond_A          106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence            34556678999999999999999999986 8999997776 479999999999999999998888888777555544699


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++|+.+|+++++.+|+++.++..++.++...|+.+++....+.
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  228 (308)
T 2ond_A          185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999988865433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.39  E-value=7.9e-13  Score=108.53  Aligned_cols=117  Identities=7%  Similarity=-0.089  Sum_probs=99.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++.+| ++.++..++.......++..+|++.|+++++++|+++.+++.+|.++.. .|+++
T Consensus        48 ~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~  125 (176)
T 2r5s_A           48 DCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VGRDE  125 (176)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHH
Confidence            445667899999999999999999 8887776664433223455568999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHhc
Q 024243          207 RAESYFDQAVKAAPDD--CYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~--~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+.+|+++++.+|+.  ..++..++.++..+|+.+++...
T Consensus       126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A          126 EALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            9999999999999975  66999999999999999887743

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=2.4e-12  Score=111.40  Aligned_cols=120  Identities=18%  Similarity=0.014  Sum_probs=103.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHhCCCCHHHH----
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVL----  191 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~--------~Gd~~eA~e~~ekAIeldP~n~~al----  191 (270)
                      ..|...|++++|+..|+++++.+|++   +.+++.+|.+++ .        .|++++|++.|+++++.+|++..+.    
T Consensus        60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  138 (261)
T 3qky_A           60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ  138 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence            34566789999999999999998865   678999996666 5        7999999999999999999987766    


Q ss_pred             -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCcHHHHhc
Q 024243          192 -------------SMYGDLIWQSHKDASRAESYFDQAVKAAPD---DCYVLASHAHFLWDA----------DEDEEDEQV  245 (270)
Q Consensus       192 -------------~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~---~~~~~~~la~il~~~----------Ge~eea~~~  245 (270)
                                   +.+|.+++. .|++++|+.+|+++++.+|+   .+.+++.++.++..+          |+++++...
T Consensus       139 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~  217 (261)
T 3qky_A          139 KIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL  217 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence                         788977777 99999999999999999998   567999999999987          777777755


Q ss_pred             cCC
Q 024243          246 GEE  248 (270)
Q Consensus       246 ~e~  248 (270)
                      .+.
T Consensus       218 ~~~  220 (261)
T 3qky_A          218 YER  220 (261)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.37  E-value=5.5e-12  Score=115.73  Aligned_cols=119  Identities=13%  Similarity=0.059  Sum_probs=100.6

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCCHHHHHHHHHHHHHhCCCCHH----HH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNY------------ARFLKEARGDLLKAEEYCARAILMSPNDGN----VL  191 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~l------------A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~----al  191 (270)
                      .|...|++++|+.+|+++++.+|++..++..+            |..+. ..|++++|+++|+++++++|+++.    ++
T Consensus       220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  298 (450)
T 2y4t_A          220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI-RDGRYTDATSKYESVMKTEPSIAEYTVRSK  298 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            44566889999999999999999998887766            75565 479999999999999999998854    77


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ..++.++.. .|++++|+.+++++++++|++..++..++.++...|++++|....+.
T Consensus       299 ~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          299 ERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             HHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            888877776 89999999999999999999999999999999999999999866544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.36  E-value=8.3e-12  Score=114.54  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=105.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...|++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+++|+++++++|++..++..+|.++.. +|++++
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~  112 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLDE  112 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHH
Confidence            3455689999999999999999999999999997777 48999999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCcHHHHhccC
Q 024243          208 AESYFDQAVKAAPDDC---YVLASH------------AHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~---~~~~~l------------a~il~~~Ge~eea~~~~e  247 (270)
                      |+.+|+++++.+|++.   .++..+            +.++...|+++++....+
T Consensus       113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  167 (450)
T 2y4t_A          113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD  167 (450)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999988   776655            666999999999986543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.36  E-value=9.2e-12  Score=118.62  Aligned_cols=118  Identities=12%  Similarity=0.034  Sum_probs=102.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++++|++..+|..++..+. ..|++++|+++|+++++++|++..++..++.++.. .|+++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  458 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNIL  458 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHH
Confidence            34566789999999999999999999999999996666 47999999999999999999999999999977776 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|+.+|+++++.+|+++.++..++.++...|+.+++....
T Consensus       459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  498 (597)
T 2xpi_A          459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF  498 (597)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999999999999998888653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.35  E-value=1.2e-11  Score=88.86  Aligned_cols=85  Identities=18%  Similarity=0.278  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA  230 (270)
Q Consensus       151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la  230 (270)
                      .++.+++.+|..+. ..|++++|+++|+++++++|++..++..+|.++.. .+++++|+.+|+++++++|++..++..++
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            46788999997766 48999999999999999999999999999987777 99999999999999999999999999999


Q ss_pred             HHHHHcC
Q 024243          231 HFLWDAD  237 (270)
Q Consensus       231 ~il~~~G  237 (270)
                      .++..+|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.35  E-value=3.4e-12  Score=121.61  Aligned_cols=118  Identities=15%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM------SPND-GNVLSMYGDLIWQS  201 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n-~~al~~lA~ll~~~  201 (270)
                      |...|++++|+.+|+++++.+|+++.++..++..+. ..|++++|+++|++++++      +|++ ..+|..++.++.. 
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-  528 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-  528 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-
Confidence            344577888888888888888888888888886665 468888888888888877      5654 6777888877766 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          202 HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .|++++|+.+|+++++.+|+++.++..++.+|...|+.+++....+.
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            88888888888888888888888888888888888888877765443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.35  E-value=8.5e-12  Score=103.61  Aligned_cols=103  Identities=10%  Similarity=-0.004  Sum_probs=90.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------NV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----------------~a  190 (270)
                      ..|...|++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|++++++.|++.                .+
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  123 (213)
T 1hh8_A           45 CMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV  123 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH
Confidence            34566789999999999999999999999999997776 48999999999999999998877                99


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      +.++|.+++. +|++++|+.+|+++++++|++.......+.
T Consensus       124 ~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  163 (213)
T 1hh8_A          124 LYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAM  163 (213)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHcCcccccchHHHHH
Confidence            9999987777 999999999999999999987554444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.35  E-value=9.9e-13  Score=117.00  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=86.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|++..+++.+|.++.. +|+++
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~   89 (281)
T 2c2l_A           12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYD   89 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34556789999999999999999999999999997766 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 024243          207 RAESYFDQAVKAAPDD  222 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~  222 (270)
                      +|+.+|+++++++|++
T Consensus        90 ~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           90 EAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCccc
Confidence            9999999999999866

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.34  E-value=2.5e-13  Score=129.41  Aligned_cols=127  Identities=7%  Similarity=-0.025  Sum_probs=112.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------------HHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---------------GNVL  191 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---------------~~al  191 (270)
                      .++...+++++|+..|+++++.+|+++.++.++|..++. .|+|++|+.+|++||+++|++               ..+|
T Consensus       242 ~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             EEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             EEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            444566788899999999999999999999999987775 899999999999999999998               7999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      .++|.+++. ++++++|+.+|++|++++|++..+++++|.+|..+|++++|....+....++|.
T Consensus       321 ~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~  383 (457)
T 1kt0_A          321 LNLAMCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  383 (457)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            999977777 999999999999999999999999999999999999999999766553334444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.33  E-value=1.4e-11  Score=93.65  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=89.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      .|.+..+++.+|..+. ..|++++|+++|+++++++|++..++..+|.++.. .+++++|+.+|+++++.+|++..+++.
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            4677889999997776 48999999999999999999999999999977776 999999999999999999999999999


Q ss_pred             HHHHHHHcCCcHHHHhccCC
Q 024243          229 HAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       229 la~il~~~Ge~eea~~~~e~  248 (270)
                      +|.++...|+++++....+.
T Consensus        90 la~~~~~~~~~~~A~~~~~~  109 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQK  109 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999865443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.32  E-value=7e-12  Score=106.98  Aligned_cols=119  Identities=18%  Similarity=0.105  Sum_probs=101.7

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQS-  201 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---al~~lA~ll~~~-  201 (270)
                      |...|++++|+..|+++++.+|+++   .+++.+|.+++ ..|++++|++.|+++++++|++..   +++.+|.+++.. 
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~   92 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD   92 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence            4456899999999999999999874   78999997777 489999999999999999999875   788888766541 


Q ss_pred             ----------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcHHHHhccCC
Q 024243          202 ----------------HKDASRAESYFDQAVKAAPDDCYVL-----------------ASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       202 ----------------~g~~e~A~~~~ekAL~~~P~~~~~~-----------------~~la~il~~~Ge~eea~~~~e~  248 (270)
                                      .|++++|+..|+++++.+|++..+.                 +.+|.+++..|+++++....+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  172 (225)
T 2yhc_A           93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG  172 (225)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence                            5789999999999999999987654                 5788899999999999865443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=1.2e-11  Score=110.49  Aligned_cols=112  Identities=15%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------hhCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE------ARGDL-------LKAEEYCARAIL-MSPNDGNVLSMYGDLIWQS  201 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~------~~Gd~-------~eA~e~~ekAIe-ldP~n~~al~~lA~ll~~~  201 (270)
                      ++|+..|+++++.+|+++.+|+++|.++..      ..|++       ++|...|++||+ ++|++..+|..++.++.. 
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~-  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            789999999999999999999999977653      24885       999999999999 799999999999977766 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHhccCC
Q 024243          202 HKDASRAESYFDQAVKAAPDDCY-VLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~~-~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .|++++|..+|+++++++|+++. ++..++.++...|+.+++....+.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999886 999999999999999998865444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.32  E-value=3.4e-12  Score=108.42  Aligned_cols=118  Identities=18%  Similarity=0.233  Sum_probs=104.5

Q ss_pred             cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--------dP~n~~a  190 (270)
                      ..|...+++++|+.+|++++++        +|....++..+|.++. ..|++++|+++|++++++        +|....+
T Consensus        51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  129 (283)
T 3edt_B           51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ  129 (283)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            3456678999999999999988        4677889999996666 589999999999999999        5778899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA--------APDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~--------~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +.++|.+++. .|++++|+.+|++++++        .|....++..+|.++...|++++|....
T Consensus       130 ~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          130 LNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999987777 99999999999999999        7778889999999999999999998543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=1.9e-11  Score=90.52  Aligned_cols=95  Identities=19%  Similarity=0.050  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      .+..++.+|..+. ..|++++|+++|+++++.+|++..++..+|.+++. .|++++|+.+++++++.+|+++.++..++.
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3567888996666 48999999999999999999999999999987777 999999999999999999999999999999


Q ss_pred             HHHHcCCcHHHHhccCC
Q 024243          232 FLWDADEDEEDEQVGEE  248 (270)
Q Consensus       232 il~~~Ge~eea~~~~e~  248 (270)
                      ++...|+++++....+.
T Consensus        81 ~~~~~~~~~~A~~~~~~   97 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEE   97 (118)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHH
Confidence            99999999999876544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.32  E-value=1.2e-11  Score=115.93  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=109.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .+|...+++++|+.+|+++++.+|+ ..++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|+++
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  327 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYK  327 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHH
Confidence            4556678999999999999999999 999999996666 58999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++.+|++..++..++.++...|+++++....+.
T Consensus       328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  369 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE  369 (537)
T ss_dssp             HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999865443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.30  E-value=2.5e-11  Score=91.36  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=90.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      +.+|.++.++..+|..+. ..|++++|+++|+++++.+|++..++..+|.++.. .+++++|+.+++++++.+|++..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHH
Confidence            445677888999997776 48999999999999999999999999999987777 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcHHHHhccCC
Q 024243          227 ASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ..+|.++...|+++++....+.
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999865443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.30  E-value=8.3e-11  Score=87.70  Aligned_cols=99  Identities=19%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             hCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          148 ADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       148 ldP~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      .+|.+ ..+++.+|..+. ..|++++|+++|+++++.+|++..++..+|.++.. .|++++|+.+|+++++.+|++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence            45666 788899996666 48999999999999999999999999999987777 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcHHHHhccCC
Q 024243          227 ASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ..++.++...|+++++....+.
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999865443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=4.5e-11  Score=92.68  Aligned_cols=100  Identities=13%  Similarity=0.010  Sum_probs=91.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~  223 (270)
                      ..+|.+...++.+|..++ ..|++++|+++|+++++++|++   ..++..+|.+++. .+++++|+.+|+++++.+|++.
T Consensus        22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCH
T ss_pred             ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCH
Confidence            457889999999997666 5899999999999999999988   8999999977777 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          224 YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       224 ~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+++.++.++...|+++++....+.
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999876544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.28  E-value=4.5e-12  Score=105.54  Aligned_cols=115  Identities=9%  Similarity=-0.075  Sum_probs=99.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------NVLSMYG  195 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----------------~al~~lA  195 (270)
                      .++++++...++...+..+.....+..+|..++ ..|++++|+++|++|+++.|+++                .++.++|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            457777788887777777888889999997777 48999999999999999999987                8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+++. +|++++|+.+|+++++++|++..+++.+|.++..+|++++|....+.
T Consensus        96 ~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A           96 TCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            77777 99999999999999999999999999999999999999999865443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.28  E-value=2.9e-11  Score=108.22  Aligned_cols=94  Identities=17%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR-AES  210 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~-A~~  210 (270)
                      .+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|++||+++|++++++.+++.++.. .|++.+ +..
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~  256 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNR  256 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            468999999999999999999999999996666 58999999999999999999999999999977777 888876 679


Q ss_pred             HHHHHHHhCCCCHHHHH
Q 024243          211 YFDQAVKAAPDDCYVLA  227 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~  227 (270)
                      +++++++++|+++.+.-
T Consensus       257 ~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhCCCChHHHH
Confidence            99999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.27  E-value=1.3e-11  Score=104.88  Aligned_cols=118  Identities=14%  Similarity=0.180  Sum_probs=103.7

Q ss_pred             cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--------dP~n~~a  190 (270)
                      ..|...+++++|+.+|++++++        +|....++.++|.++. ..|++++|+++|++++++        +|....+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4556678999999999999998        5778899999996666 589999999999999999        7888899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCC
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA-------------------------------------------------APD  221 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~-------------------------------------------------~P~  221 (270)
                      +..+|.++.. +|++++|+.+|++++++                                                 .|.
T Consensus       172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence            9999988887 99999999999999986                                                 245


Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          222 DCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       222 ~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ...++..+|.++...|++++|....
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~  275 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLE  275 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6778999999999999999998653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.26  E-value=4.3e-11  Score=89.92  Aligned_cols=92  Identities=23%  Similarity=0.369  Sum_probs=84.6

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |...+++++|+.+|+++++.+|.+..++..+|.++. ..|++++|+++++++++.+|++..++..++.++.. .|++++|
T Consensus        45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A  122 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEA  122 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHH
Confidence            445679999999999999999999999999996666 58999999999999999999999999999988877 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 024243          209 ESYFDQAVKAAPDD  222 (270)
Q Consensus       209 ~~~~ekAL~~~P~~  222 (270)
                      +.+|+++++.+|++
T Consensus       123 ~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          123 IEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHccCCCC
Confidence            99999999999863

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.26  E-value=1.5e-11  Score=109.20  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=102.0

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPR------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSM  193 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~  193 (270)
                      +..|...|++++|+.+|++++++.+.      .+.++.++|.++. ..|++++|+.+|++|+++.|..      ..++.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34567788999999999999998542      2678999996666 5899999999999999999854      568899


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          194 YGDLIWQSH-KDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       194 lA~ll~~~~-g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|.++.. . |++++|+.+|++|+++.|++      ..++.++|.++..+|++++|....+.
T Consensus       123 lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          123 LGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9976666 6 99999999999999998864      56789999999999999999865443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.26  E-value=3.7e-11  Score=111.43  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN------VLSMYGDLIWQS  201 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~------al~~lA~ll~~~  201 (270)
                      .|...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..      ++..+|.++...
T Consensus       347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  425 (514)
T 2gw1_A          347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN  425 (514)
T ss_dssp             HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence            3445567777777777777777777777777775555 367777777777777777776644      677777443321


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          202 --HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       202 --~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                        .|++++|+.+|+++++.+|++..++..++.++...|+.+++...
T Consensus       426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (514)
T 2gw1_A          426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL  471 (514)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence              57777777777777777777777777777777777777777654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.1e-11  Score=114.90  Aligned_cols=117  Identities=14%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++
T Consensus       279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~  356 (514)
T 2gw1_A          279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFDD  356 (514)
T ss_dssp             HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT-TTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH-cCCHHH
Confidence            4455677888888888888888888888888886665 47888888888888888888888888888866666 888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |+.+|+++++.+|+++.++..++.++...|+++++....
T Consensus       357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888888888888888888888888888888888887543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.25  E-value=6.5e-11  Score=98.92  Aligned_cols=92  Identities=18%  Similarity=0.077  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-------DGN-----VLSMYGDLIWQSHKDASRAESYFDQAVKA--  218 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-------n~~-----al~~lA~ll~~~~g~~e~A~~~~ekAL~~--  218 (270)
                      ...+.+.|..++. .|+|++|++.|++||+++|+       +..     +|.++|.++.. +|++++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            4567788977774 79999999999999999999       544     99999976666 99999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCcHHHHhcc
Q 024243          219 -----APDDCYVL----ASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       219 -----~P~~~~~~----~~la~il~~~Ge~eea~~~~  246 (270)
                           +|++..+|    +++|.++..+|++++|....
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y  125 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  125 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence                 99999999    99999999999999998643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.24  E-value=8e-11  Score=89.97  Aligned_cols=92  Identities=18%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD---CYVLAS  228 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~---~~~~~~  228 (270)
                      +++.+|..++. .|++++|+++|+++++.+|++.   .+++.+|.+++. .|++++|+.+|+++++.+|++   +.+++.
T Consensus         4 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            46778867764 7999999999999999999998   899999988887 999999999999999999999   899999


Q ss_pred             HHHHHHHcCCcHHHHhccCC
Q 024243          229 HAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       229 la~il~~~Ge~eea~~~~e~  248 (270)
                      +|.++..+|+++++....+.
T Consensus        82 la~~~~~~g~~~~A~~~~~~  101 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQ  101 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999876444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.24  E-value=5.8e-11  Score=95.63  Aligned_cols=94  Identities=15%  Similarity=-0.015  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILM------------------SPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------------------dP~n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      +..+...|..++. .|+|++|+++|++||++                  +|.+..++.++|.+++. +|++++|+.++++
T Consensus        11 a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~   88 (162)
T 3rkv_A           11 VEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            5667889977774 89999999999999999                  78888999999977777 9999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          215 AVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       215 AL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++++|+++.+++.+|.++..+|++++|....+.
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            9999999999999999999999999999876444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.23  E-value=6.5e-11  Score=89.24  Aligned_cols=96  Identities=8%  Similarity=0.140  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 024243          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD-------C  223 (270)
Q Consensus       151 ~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~-------~  223 (270)
                      ..+..+..+|..+. ..|++++|+.+|+++++.+|++..++..+|.++.. .|++++|+.+|+++++.+|++       .
T Consensus         2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            34677889997766 48999999999999999999999999999987777 999999999999999999887       9


Q ss_pred             HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          224 YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       224 ~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+++.+|.++...|+++++....+.
T Consensus        80 ~~~~~la~~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           80 KAYARIGNSYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHH
Confidence            9999999999999999999865443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.23  E-value=7.2e-11  Score=88.75  Aligned_cols=88  Identities=15%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 024243          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD--DCYV  225 (270)
Q Consensus       148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~--~~~~  225 (270)
                      .+|+++.+++.+|.+++ ..|++++|+++|+++++++|+++.+|..+|.++.. .|++++|+.+|++++++.|+  +...
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            58999999999997776 48999999999999999999999999999977777 99999999999999999774  5666


Q ss_pred             HHHHHHHHHHcC
Q 024243          226 LASHAHFLWDAD  237 (270)
Q Consensus       226 ~~~la~il~~~G  237 (270)
                      ...+..++...+
T Consensus        80 ~~~l~~~l~~~~   91 (100)
T 3ma5_A           80 LSELQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            666666665443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.22  E-value=2.8e-10  Score=89.81  Aligned_cols=94  Identities=12%  Similarity=-0.077  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF  232 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i  232 (270)
                      +..+..+|..++ ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+.+|+++++.+|+++.+++.+|.+
T Consensus        13 ~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            567788997776 48999999999999999999999999999977777 9999999999999999999999999999999


Q ss_pred             HHHcCCcHHHHhccCC
Q 024243          233 LWDADEDEEDEQVGEE  248 (270)
Q Consensus       233 l~~~Ge~eea~~~~e~  248 (270)
                      +...|+++++....+.
T Consensus        91 ~~~~~~~~~A~~~~~~  106 (166)
T 1a17_A           91 NMALGKFRAALRDYET  106 (166)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHH
Confidence            9999999999865443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.21  E-value=1.4e-10  Score=102.63  Aligned_cols=116  Identities=9%  Similarity=0.071  Sum_probs=97.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHH---HhCCCCH----HHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAI---LMSPNDG----NVLSM  193 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAI---eldP~n~----~al~~  193 (270)
                      .+|...+++++|+.+|+++++..+..      ..+++++|.++. ..|++++|+++|++|+   +..|++.    .++.+
T Consensus       123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            34556679999999999999876554      568899996666 5899999999999999   5567644    68899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHH-Hh
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEED-EQ  244 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea-~~  244 (270)
                      +|.++.. +|++++|+.+|++++++.++      ...+++++|.++..+|++++| ..
T Consensus       202 lg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~  258 (293)
T 2qfc_A          202 HAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            9987777 99999999999999988653      278999999999999999998 54

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.21  E-value=1.3e-10  Score=103.23  Aligned_cols=96  Identities=10%  Similarity=-0.029  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       150 P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                      |.++.++..+|..++ ..|++++|+++|++||+++|+++.++.++|.++.. +|++++|+.+|+++++++|++..+++.+
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            678899999997777 48999999999999999999999999999977777 9999999999999999999999999999


Q ss_pred             HHHHHHcCCcHHHHhccC
Q 024243          230 AHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       230 a~il~~~Ge~eea~~~~e  247 (270)
                      |.++..+|++++|....+
T Consensus        79 g~~~~~~g~~~~A~~~~~   96 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQ   96 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999999986543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.18  E-value=2.8e-11  Score=108.27  Aligned_cols=128  Identities=11%  Similarity=0.060  Sum_probs=104.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPR--N----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~--n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~l  194 (270)
                      ..|...+++++|+.+|++++++.+.  +    ..++.++|.++ .. |++++|+++|++|+++.|..      ..++.++
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            4566778999999999999998543  2    46788899555 45 99999999999999998754      5788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ  258 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~  258 (270)
                      |.++.. +|++++|+.+|++++++.|++      ..++..++.++..+|+++++....+... ..|.|..
T Consensus       162 g~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          162 SRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            987777 999999999999999987654      3478888999999999999998776633 6777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=4.6e-11  Score=103.23  Aligned_cols=118  Identities=14%  Similarity=0.195  Sum_probs=103.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQAD--------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeld--------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel--------dP~n~~a  190 (270)
                      ..|...+++++|+.+|++++++.        |....++..+|.++. ..|++++|+++|++++++        +|....+
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  197 (311)
T 3nf1_A          119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT  197 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44566789999999999999984        667788999996666 589999999999999999        7888889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCC
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA-------------------------------------------------APD  221 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~-------------------------------------------------~P~  221 (270)
                      +..+|.++.. +|++++|+.+|+++++.                                                 +|.
T Consensus       198 ~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  276 (311)
T 3nf1_A          198 KNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT  276 (311)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch
Confidence            9999988877 99999999999999984                                                 466


Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          222 DCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       222 ~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ...++..+|.++...|++++|....
T Consensus       277 ~~~~~~~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          277 VTTTLKNLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7889999999999999999998653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=1.8e-10  Score=106.67  Aligned_cols=117  Identities=19%  Similarity=0.267  Sum_probs=97.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE--ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDAS  206 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~--~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~~g~~e  206 (270)
                      .+++++|+.+|+++++++|+++.++..++.+++.  ..+++++|++.|++|++++|++..++..++..+..   ..++++
T Consensus       151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~  230 (472)
T 4g1t_A          151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG  230 (472)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence            3589999999999999999999999999966542  24778899999999999999999999998855443   246788


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|+.+|+++++.+|++..++..+|.++...|+.+++....+.
T Consensus       231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  272 (472)
T 4g1t_A          231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK  272 (472)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            999999999999999999999999999999999999865433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=4.9e-11  Score=103.09  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=102.9

Q ss_pred             cccccCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel--------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~a  190 (270)
                      ..|...|++++|+.+|++++++        +|....++..+|.++. ..|++++|+++|++++++.        |....+
T Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ  155 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            3455678999999999999988        4667889999996666 5899999999999999984        667788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA--------APDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~--------~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +..+|.++.. .|++++|+.+|++++++        +|....++..++.++...|+++++....
T Consensus       156 ~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  218 (311)
T 3nf1_A          156 LNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY  218 (311)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999977777 99999999999999998        7777889999999999999999998543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.16  E-value=7.7e-11  Score=91.33  Aligned_cols=116  Identities=11%  Similarity=0.042  Sum_probs=97.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYG  195 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA  195 (270)
                      .|...+++++|+.+|++++++.+...      .++..+|.++. ..|++++|+++|++++++.+..      ..++..+|
T Consensus        18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~   96 (164)
T 3ro3_A           18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG   96 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            45567899999999999999866432      57888996666 5899999999999999987653      66888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .+++. .|++++|+.++++++++.+.      ...++..++.++...|+.+++...
T Consensus        97 ~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           97 NTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence            77777 99999999999999987432      256889999999999999998864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.16  E-value=6.9e-10  Score=96.00  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--  201 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--  201 (270)
                      .|...+++++|+.+|+++++  |+++.+++.+|.++. .    .+++++|+++|++|++++  ++.++..+|.+ +..  
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~-~~~g~   88 (273)
T 1ouv_A           15 KSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL-YYSGQ   88 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH-HHHTS
T ss_pred             HHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH-HhCCC
Confidence            34455677777777777777  677777777774444 4    577777777777777764  67777777743 334  


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHhc
Q 024243          202 --HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQV  245 (270)
Q Consensus       202 --~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~~  245 (270)
                        .+++++|+.+|+++++.  +++.++..+|.+|..    .++.+++...
T Consensus        89 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~  136 (273)
T 1ouv_A           89 GVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEY  136 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence              67777777777777776  367777777777777    7777777643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.16  E-value=9.6e-11  Score=103.60  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=94.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-------CCCCHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM-------SPNDGNVLSMY  194 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-------dP~n~~al~~l  194 (270)
                      +|...+++++|+.+|++++++.+..      ..++.++|.++. ..|++++|+++|++|++.       .+....++.++
T Consensus       124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl  202 (293)
T 3u3w_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH  202 (293)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            3445679999999999999975543      337889996666 589999999999999952       23345688999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCc-HHHHh
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADED-EEDEQ  244 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~-eea~~  244 (270)
                      |.+++. +|++++|+.++++++++.++.      ..+++++|.++..+|+. ++|..
T Consensus       203 g~~y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          203 AKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            988887 999999999999999987644      88999999999999964 77764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.16  E-value=1.8e-10  Score=106.71  Aligned_cols=115  Identities=18%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--------  201 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--------  201 (270)
                      ...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|+++.++..+|.++...        
T Consensus       224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~  302 (472)
T 4g1t_A          224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR  302 (472)
T ss_dssp             ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence            34568889999999999999999999999996666 579999999999999999999999998888654321        


Q ss_pred             ----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          202 ----------HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       202 ----------~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                                ...+++|+.+|+++++.+|++..++..+|.++...|++++|...
T Consensus       303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~  356 (472)
T 4g1t_A          303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY  356 (472)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHH
Confidence                      23466788888888888888888888888888888888888754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=1.7e-10  Score=110.22  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~-~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      .+++..|++++|...|+++++++|.++ .+|..++.++. ..|++++|.++|++|++..|.+...+...+.+.+...|++
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~  407 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  407 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred             HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence            445667899999999999999999985 69999997776 4799999999999999999988888888886655558999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++|..+|+++++.+|+++.++..++.++...|+.+++....+.
T Consensus       408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~  450 (530)
T 2ooe_A          408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  450 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence            9999999999999999999999999999999999998865433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.14  E-value=3.5e-11  Score=92.26  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             hCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          167 RGDLLKAEEYCARAILM---SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIel---dP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      .|++++|+++|++||++   +|++..++..+|.+++. +|++++|+.+|+++++++|+++.+++.+|.++...|+++++.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            58999999999999999   69999999999988877 999999999999999999999999999999999999999998


Q ss_pred             hccC
Q 024243          244 QVGE  247 (270)
Q Consensus       244 ~~~e  247 (270)
                      ...+
T Consensus        82 ~~~~   85 (117)
T 3k9i_A           82 ELLL   85 (117)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.13  E-value=9e-11  Score=106.54  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=98.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGDL  197 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~----~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA~l  197 (270)
                      .|...|++++|+.+|+++++++|+++    .++..+|.++. ..|++++|+++|++++++      +|....++..+|.+
T Consensus        57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            34567899999999999999999997    58889997776 489999999999999999      68888999999987


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 024243          198 IWQSHKDASRAESYFDQAVKA------APDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       198 l~~~~g~~e~A~~~~ekAL~~------~P~~~~~~~~la~il~~~Ge  238 (270)
                      ++. .|++++|+.+|++++++      .|....++..++.++...|+
T Consensus       136 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          136 LKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            777 99999999999999999      56678899999999999999

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=1.1e-10  Score=106.44  Aligned_cols=118  Identities=11%  Similarity=-0.014  Sum_probs=100.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLSM  193 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~------~al~~  193 (270)
                      ..|...|++++|+.+|++++++.+..       ..++.++|.++. ..|++++|+++|++|+++.+...      .++.+
T Consensus       151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  229 (383)
T 3ulq_A          151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN  229 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45566789999999999999985443       468889996666 58999999999999999876443      58999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVK-----AA-PDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~-----~~-P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|.++.. +|++++|+.+|++|++     .+ |....++.++|.++..+|++++|....
T Consensus       230 lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  287 (383)
T 3ulq_A          230 IGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH  287 (383)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9987777 9999999999999999     46 888999999999999999999998643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.2e-11  Score=92.01  Aligned_cols=86  Identities=16%  Similarity=0.112  Sum_probs=74.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLIWQ  200 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~ll~~  200 (270)
                      ..|...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|++      ..++..++.++..
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~   90 (111)
T 2l6j_A           12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA   90 (111)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999999997777 4899999999999999999999      8899999976666


Q ss_pred             HcCCHHHHHHHHHH
Q 024243          201 SHKDASRAESYFDQ  214 (270)
Q Consensus       201 ~~g~~e~A~~~~ek  214 (270)
                       .|+++.|+..|++
T Consensus        91 -~~~~~~a~~~~~~  103 (111)
T 2l6j_A           91 -VGSVQIPVVEVDE  103 (111)
T ss_dssp             -HHCCCCCSSSSSS
T ss_pred             -HHhHhhhHhHHHH
Confidence             7777777665554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.11  E-value=5.4e-11  Score=87.70  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          158 NYARFLKEARGDLLKAEEYCARAILMSPNDGN-VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      ..|..+. ..|++++|+++|+++++++|++.. ++..+|.+++. +|++++|+.+|+++++++|++..++
T Consensus         5 ~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3443444 356666666666666666666666 66666655544 6666666666666666666665555

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.08  E-value=1.7e-10  Score=94.34  Aligned_cols=117  Identities=11%  Similarity=0.049  Sum_probs=95.7

Q ss_pred             cccccCCChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh---CCC----CHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQ------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM---SPN----DGNVLSM  193 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALe------ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel---dP~----n~~al~~  193 (270)
                      ..|...|++++|+.+|+++++      ..|....++.++|.++. ..|++++|+++|++++++   .++    ...++.+
T Consensus        34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  112 (203)
T 3gw4_A           34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYE  112 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence            345567899999999999999      45566788999996666 589999999999999999   443    3567889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCcHHHHhc
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAP--DD----CYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P--~~----~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|.+++. .|++++|+.++++++++.+  .+    ..++..++.++...|+.+++...
T Consensus       113 lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  169 (203)
T 3gw4_A          113 VATVALH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH  169 (203)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            9977777 9999999999999997643  22    33568999999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.08  E-value=1.3e-10  Score=105.80  Aligned_cols=118  Identities=11%  Similarity=0.023  Sum_probs=98.9

Q ss_pred             cccccCCChHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA---DP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM  193 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel---dP---~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------~~al~~  193 (270)
                      .+|...|++++|+.+|++++++   .+   ..+.+++.+|.+++ ..|++++|+++|++|+++.+..       ..++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            3445678999999999999997   23   35689999997776 5899999999999999995543       468899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHhcc
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAPDDC------YVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~------~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|.++.. +|++++|+.+|++|+++.+...      .++.++|.++..+|++++|....
T Consensus       190 lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          190 FATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF  247 (383)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9977777 9999999999999999866433      58999999999999999998653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.08  E-value=2.2e-10  Score=98.96  Aligned_cols=110  Identities=9%  Similarity=0.060  Sum_probs=95.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGD  196 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~----~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA~  196 (270)
                      ..+...|++++|+.+|+++++.+|+++    .++..+|.++. ..|++++|+++|++++++      .|....++..+|.
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            344567899999999999999999994    67889997766 589999999999999988      5666789999997


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 024243          197 LIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADE  238 (270)
Q Consensus       197 ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge  238 (270)
                      ++.. .|++++|+.+|++++++.+..      ..++..++.++...|+
T Consensus        92 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           92 TLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            7777 999999999999999987643      4489999999999999

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.07  E-value=2.9e-09  Score=92.08  Aligned_cols=105  Identities=12%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cC
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----HK  203 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~----~g  203 (270)
                      .+++++|+.+|+++++.+  ++.+++.+|.++. .    .+++++|+++|++|++.  +++.++..+|.+ +..    .+
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~-~~~~~~~~~  128 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGI-YHDGKVVTR  128 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH-HHHCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHH-HHcCCCccc
Confidence            346666666666666664  5666666664433 4    56666666666666665  366666666633 333    56


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ  244 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~  244 (270)
                      ++++|+.+|+++++.+  +..++..++.++..    .++.+++..
T Consensus       129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            6666666666666654  45666666666666    566665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=2.4e-09  Score=105.30  Aligned_cols=113  Identities=10%  Similarity=0.038  Sum_probs=101.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd----------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g  203 (270)
                      -.++|+..++++++.+|++..+|+..+.++.. .++          +++|+++++++|+++|++..+|...++++.. .+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence            34788999999999999999999999977764 677          9999999999999999999999999988877 89


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHhccCC
Q 024243          204 --DASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD-EDEEDEQVGEE  248 (270)
Q Consensus       204 --~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G-e~eea~~~~e~  248 (270)
                        ++++|+++++++++.+|++..+|...+.++...+ .++++.+.-+.
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~  169 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS  169 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence              7799999999999999999999999999999999 66666554333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.07  E-value=5.8e-10  Score=99.14  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=86.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL  226 (270)
Q Consensus       147 eldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~  226 (270)
                      +.-|++...+..+|..+. ..|++++|+++|+++++++|+++.++..+|.++.. .|++++|+.+|+++++.+|+.....
T Consensus       111 ~~lp~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~  188 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQG  188 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred             HHcCCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHH
Confidence            334999999999997777 48999999999999999999999999999988877 9999999999999999999878777


Q ss_pred             HHHHHHHHHcCCcHHHHhccC
Q 024243          227 ASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~~e  247 (270)
                      ...+..+...++.+++....+
T Consensus       189 ~~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          189 LVAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHH
Confidence            778877888888777665433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.06  E-value=4.6e-09  Score=92.70  Aligned_cols=116  Identities=11%  Similarity=-0.010  Sum_probs=95.7

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGD  196 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~  196 (270)
                      |...+++++|+.+|+++++..+....      .++.+|.++. ..|++++|+++|++|+++.+..      ..++.++|.
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  163 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN  163 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            34567999999999999999887653      3455664444 5789999999999999876544      668999997


Q ss_pred             HHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCcHHHHhcc
Q 024243          197 LIWQSHKDASRAESYFDQAV---KAAPDDC----YVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       197 ll~~~~g~~e~A~~~~ekAL---~~~P~~~----~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ++.. +|++++|+.+|++|+   +..|++.    .++.++|.+|..+|++++|....
T Consensus       164 ~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~  219 (293)
T 2qfc_A          164 IYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV  219 (293)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence            7777 999999999999999   5567643    68999999999999999998643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.05  E-value=2.3e-10  Score=102.52  Aligned_cols=117  Identities=11%  Similarity=0.006  Sum_probs=98.2

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~l  194 (270)
                      ..|...|++++|+.+|++++++.|....      ++.++|.++. ..|++++|+++|++++++.|..      ..++..+
T Consensus       195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  273 (406)
T 3sf4_A          195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  273 (406)
T ss_dssp             HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence            3455568999999999999998766543      8889996666 4899999999999999988866      7788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhc
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |.++.. .|++++|+.+|++++++.+..      ..++..++.++...|+++++...
T Consensus       274 a~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          274 GNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            977777 999999999999999886644      77889999999999999988753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.05  E-value=3.9e-10  Score=101.04  Aligned_cols=110  Identities=9%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGD  196 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~----~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA~  196 (270)
                      ..+...|++++|+.+|+++++++|+++    .++..+|.+++ ..|++++|+++|++|+++      .|....++..+|.
T Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~   95 (406)
T 3sf4_A           17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   95 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            345567899999999999999999994    67889997666 589999999999999988      4566789999998


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 024243          197 LIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADE  238 (270)
Q Consensus       197 ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge  238 (270)
                      +++. .|++++|+.+|++++++.|..      ..++..+|.++...|+
T Consensus        96 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           96 TLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            7777 999999999999999997753      5599999999999999

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.04  E-value=1.2e-09  Score=78.25  Aligned_cols=73  Identities=23%  Similarity=0.297  Sum_probs=66.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~  200 (270)
                      ..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|++..++..++.++..
T Consensus        17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            34566789999999999999999999999999997776 48999999999999999999999999999976654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=2.2e-10  Score=104.71  Aligned_cols=113  Identities=8%  Similarity=-0.102  Sum_probs=93.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcC
Q 024243          141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-----------------NVLSMYGDLIWQSHK  203 (270)
Q Consensus       141 ~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~-----------------~al~~lA~ll~~~~g  203 (270)
                      .+...++..+.....+..+|..++ ..|+|++|+.+|++||+++|++.                 .++.++|.+++. ++
T Consensus       167 ~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g  244 (338)
T 2if4_A          167 RSDMTVEERIGAADRRKMDGNSLF-KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LK  244 (338)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHTC-SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TT
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            334444455666788899997776 58999999999999999999887                 489999977766 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                      ++++|+.+|+++++++|++..+++++|.+|..+|++++|....+....+.|.
T Consensus       245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999776554444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.01  E-value=2e-09  Score=81.46  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243          149 DPRNPLLLSNYARFLKEARGD--LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY  224 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd--~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~  224 (270)
                      +|+++.++..+|.+++...+.  .++|..++++|+++||+++.+++.+|.++++ .|+|++|+.+|+++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcc
Confidence            799999999999999754332  7999999999999999999999999988888 99999999999999999998543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.01  E-value=1e-09  Score=104.77  Aligned_cols=112  Identities=15%  Similarity=0.197  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------hCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEA------RGDLL-------KAEEYCARAIL-MSPNDGNVLSMYGDLIWQS  201 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~------~Gd~~-------eA~e~~ekAIe-ldP~n~~al~~lA~ll~~~  201 (270)
                      +.++..|+++++.+|+++.+|..+|.++...      .|+++       +|.+.|++|++ ++|++..+|..++.++.. 
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            4788999999999999999999999776631      58987       99999999997 899999999999976666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          202 HKDASRAESYFDQAVKAAPDDC-YVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P~~~-~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .|++++|..+|+++++++|+++ .+|..++.++...|+.+++....+.
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999999985 6999999999999998888865444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.01  E-value=6e-09  Score=95.25  Aligned_cols=109  Identities=11%  Similarity=0.060  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc---CC
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLI----WQSH---KD  204 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll----~~~~---g~  204 (270)
                      ..++|+..+.++|++||++..+|+..+.++. ..+  ++++|++++.++|.++|++..+|...+.++    .. .   ++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCC
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCC
Confidence            3478999999999999999999999997776 467  999999999999999999999999999877    44 5   78


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--HHHh
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDE--EDEQ  244 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~e--ea~~  244 (270)
                      +++++.+++++++.+|++..+|...+.++...+..+  ++-+
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~  167 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS  167 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence            999999999999999999999999999999999876  5443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.00  E-value=2.4e-10  Score=103.68  Aligned_cols=116  Identities=11%  Similarity=-0.072  Sum_probs=98.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~------al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~l  194 (270)
                      ..|...|++++|+.+|++++++.|....      ++..+|.++. ..|++++|+++|++++++.+..      ..++..+
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  309 (411)
T 4a1s_A          231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL  309 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456678999999999999998876543      8889996666 5899999999999999998854      7788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHh
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~  244 (270)
                      |.++.. +|++++|+.+|++++++.++.      ..++..++.++...|+++++..
T Consensus       310 a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          310 GNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            977777 999999999999999986532      5589999999999999999874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.99  E-value=6e-10  Score=99.57  Aligned_cols=118  Identities=17%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--D----GNVLSM  193 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~--n----~~al~~  193 (270)
                      +..|...+++++|+.+|++++++.+..      ..++.++|.++. ..|++++|+++|++|+++.+.  +    ..++.+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  121 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR  121 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            355677899999999999999997643      567888996665 579999999999999999643  2    467888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|.++ .. |++++|+.+|++|+++.|..      ..++.++|.++..+|++++|....
T Consensus       122 lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  178 (307)
T 2ifu_A          122 AGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL  178 (307)
T ss_dssp             HHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99555 43 99999999999999998754      678999999999999999998643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.99  E-value=4.1e-10  Score=97.22  Aligned_cols=117  Identities=11%  Similarity=0.010  Sum_probs=93.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYG  195 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA  195 (270)
                      .|...|++++|+.+|+++++..+...      .++..+|.++. ..|++++|+++|++++++.+..      ..++..+|
T Consensus       192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  270 (338)
T 3ro2_A          192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG  270 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            44556789999999999988765433      37888886666 4799999999999999887765      77888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAAPDD------CYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~------~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .++.. .|++++|+.+|++++++.+..      ..++..++.++...|+.+++....
T Consensus       271 ~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          271 NTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            77776 899999999999998876532      558888999999999988888643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.99  E-value=5.9e-09  Score=76.55  Aligned_cols=86  Identities=13%  Similarity=0.098  Sum_probs=75.2

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~-al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      .|...+++++|+..|+++++.+|+++. +++.+|.++. ..|++++|+++|+++++++|++..++..         +.+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~   78 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMVM   78 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHH
Confidence            455678999999999999999999999 9999997776 4899999999999999999999988743         4467


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 024243          207 RAESYFDQAVKAAPDDC  223 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~  223 (270)
                      +|+.+|++++..+|++.
T Consensus        79 ~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           79 DILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHhccCcccc
Confidence            78899999998888753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.97  E-value=8.7e-10  Score=100.53  Aligned_cols=118  Identities=14%  Similarity=-0.101  Sum_probs=100.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPR-------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGNVLSM  193 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~-------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~al~~  193 (270)
                      ..|...++++.|+.++++++++.+.       ...++.++|.++. ..|++++|+++|++|+++.+      ....++.+
T Consensus       149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  227 (378)
T 3q15_A          149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLN  227 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556678999999999999998543       2457789996666 58999999999999999743      23467889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVK-----AAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~-----~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|.++.. +|++++|+.+|+++++     .+|....++..+|.++..+|+.++|....
T Consensus       228 lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  284 (378)
T 3q15_A          228 IANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI  284 (378)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9977777 9999999999999999     78888999999999999999999998653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=1.3e-09  Score=92.48  Aligned_cols=110  Identities=10%  Similarity=0.084  Sum_probs=69.4

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---H
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG----DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---S  201 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G----d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~  201 (270)
                      |...+++++|+.+|+++++.  +++.+++++|.++. . +    ++++|+++|++|++  ++++.+++++|.++..   .
T Consensus        28 ~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~  101 (212)
T 3rjv_A           28 WVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAG  101 (212)
T ss_dssp             HHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGS
T ss_pred             HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCC
Confidence            33446777777777777654  56677777774433 2 5    67777777777744  5667777777744332   1


Q ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243          202 HKDASRAESYFDQAVKAAP--DDCYVLASHAHFLWD----ADEDEEDEQ  244 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P--~~~~~~~~la~il~~----~Ge~eea~~  244 (270)
                      .+++++|+.+|+++++..|  +++.+++++|.+|..    .++.+++..
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  150 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE  150 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            4567777777777777666  346777777777766    556666654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=3.6e-09  Score=89.75  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=90.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH---cCC
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSP--NDGNVLSMYGDLIWQS---HKD  204 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP--~n~~al~~lA~ll~~~---~g~  204 (270)
                      .++++|+.+|++++  +++++.+++++|.++..   +.+++++|+++|++|++.+|  +++.+++++|.++...   .++
T Consensus        67 ~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           67 ADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             CCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred             CCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence            38999999999995  46899999999955542   15799999999999999988  4599999999555542   578


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CcHHHHh
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDA-D-----EDEEDEQ  244 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~-G-----e~eea~~  244 (270)
                      +++|+.+|+++++. |.++.++++++.+|..- |     +.+++..
T Consensus       145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~  189 (212)
T 3rjv_A          145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALH  189 (212)
T ss_dssp             HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            99999999999998 77888999999999864 2     5666654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.96  E-value=4.3e-09  Score=79.72  Aligned_cols=74  Identities=11%  Similarity=0.009  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          172 KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       172 eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      +|+++|+++++.+|+++.+++.+|.+++. .|++++|+.+|+++++++|++..+++.+|.++...|+++++....
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            58899999999999999999999987777 999999999999999999999999999999999999999998653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.96  E-value=3e-10  Score=94.81  Aligned_cols=81  Identities=11%  Similarity=0.061  Sum_probs=71.6

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD----------ASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~----------~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      +.++|++|++.|++|++++|+++++|.++|.++.. .++          +++|+..|++||+++|++..+++++|++|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            35789999999999999999999999999987766 665          4699999999999999999999999999998


Q ss_pred             cC-----------CcHHHHhccC
Q 024243          236 AD-----------EDEEDEQVGE  247 (270)
Q Consensus       236 ~G-----------e~eea~~~~e  247 (270)
                      +|           ++++|....+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHH
Confidence            85           7888876533

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.96  E-value=8.9e-10  Score=102.44  Aligned_cols=94  Identities=13%  Similarity=0.009  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAIL----------------MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV  216 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe----------------ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL  216 (270)
                      +..+..+|..++ ..|++++|+++|++||+                ++|.+..++.++|.+++. ++++++|+.++++|+
T Consensus       223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence            456788997777 48999999999999999                888999999999987777 999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          217 KAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       217 ~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++|++..+++.+|.+|..+|++++|....+.
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999999999999876554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.95  E-value=3.6e-09  Score=86.30  Aligned_cols=113  Identities=11%  Similarity=-0.027  Sum_probs=92.5

Q ss_pred             cCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcC
Q 024243          131 NNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAIL------MSPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe------ldP~n~~al~~lA~ll~~~~g  203 (270)
                      ..|++++|+..++.+.. +| ....++..+|.++. ..|++++|+++|+++++      ..+....++.++|.++.. .|
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g   80 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AG   80 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cC
Confidence            35799999996665544 55 67899999996666 58999999999999999      556677889999977777 99


Q ss_pred             CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          204 DASRAESYFDQAVKA---APDD----CYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~---~P~~----~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ++++|+.+|++++++   .+++    ..++.++|.++...|+++++....
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY  130 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999998   4433    567999999999999999998643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.95  E-value=9e-09  Score=94.05  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=97.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------H
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLL--KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD------A  205 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~--eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~------~  205 (270)
                      ++++++.++.++++.+|.|..+|+..+.++. ..++++  ++++++.++|++||.|..+|...+.++.. .++      +
T Consensus       125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhhH
Confidence            6799999999999999999999999996665 579988  99999999999999999999999977766 776      9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE  241 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~ee  241 (270)
                      +++++++++++..+|+|..+|..++.++...|+..+
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~  238 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT  238 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence            999999999999999999999999999999998444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.93  E-value=3.6e-09  Score=93.38  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=91.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLL------LSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLI  198 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~a------l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~ll  198 (270)
                      ..+++++|+.+|+++++..+.++..      +..+|.++. ..+++++|+++|++|+++.+..      ..++.++|.++
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            4579999999999999988887652      334664444 4689999999999999976543      33789999777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          199 WQSHKDASRAESYFDQAVKAA-------PDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       199 ~~~~g~~e~A~~~~ekAL~~~-------P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .. +|++++|+.+|++|++..       +....+++++|.+|+.+|++++|...
T Consensus       166 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~  218 (293)
T 3u3w_A          166 AE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            77 999999999999999531       22356889999999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=7.6e-09  Score=101.72  Aligned_cols=100  Identities=9%  Similarity=0.057  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024243          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESY  211 (270)
Q Consensus       135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-~~e~A~~~  211 (270)
                      +++++.+++++++.+|++..+|+..+.++. ..+  ++++|+++|+++|++||.|..+|...++++.. .+ .+++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence            899999999999999999999999996665 578  77999999999999999999999999988777 88 99999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      ++++++.+|.+..+|..++.++..+
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999999999999999999999886

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.90  E-value=6.3e-10  Score=106.69  Aligned_cols=94  Identities=12%  Similarity=-0.077  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHF  232 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~i  232 (270)
                      +.++..+|..++ ..|++++|+++|++|++++|++..++.++|.+++. +|++++|+.+|++|++++|++..+++++|.+
T Consensus         6 a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            6 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344556665555 47999999999999999999999999999987777 9999999999999999999999999999999


Q ss_pred             HHHcCCcHHHHhccCC
Q 024243          233 LWDADEDEEDEQVGEE  248 (270)
Q Consensus       233 l~~~Ge~eea~~~~e~  248 (270)
                      |..+|++++|....+.
T Consensus        84 ~~~~g~~~eA~~~~~~   99 (477)
T 1wao_1           84 NMALGKFRAALRDYET   99 (477)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            9999999999865443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.87  E-value=2.2e-09  Score=97.82  Aligned_cols=117  Identities=12%  Similarity=-0.032  Sum_probs=96.7

Q ss_pred             ccccCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC-------CHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-------DGNVLSMY  194 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~-------n~~al~~l  194 (270)
                      +|...|++++|+.+|++++++.      +..+.+++++|.+++ ..|++++|++++++|+++.+.       ...++.++
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            3455789999999999999873      234678999997666 589999999999999998653       24578899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      |.++.. +|++++|+.+|++|+++.+.      ...++.++|.++..+|++++|....
T Consensus       189 g~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          189 AGNYDD-FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHH-hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            977777 99999999999999987431      3568899999999999999998653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.86  E-value=2.6e-08  Score=82.48  Aligned_cols=101  Identities=11%  Similarity=0.014  Sum_probs=89.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMS-P-NDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G---d~~eA~e~~ekAIeld-P-~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      .....+...|.+.++.++.+..+.++||.++.. ..   ++.+++.+++..++.+ | ++.++++++|..+++ .++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence            467888999999999999999999999987774 45   7789999999999999 7 679999999977776 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      |+.+++++|+++|+|.++......+--.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998887766543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=2.8e-08  Score=92.63  Aligned_cols=106  Identities=8%  Similarity=-0.010  Sum_probs=97.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESY  211 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-~~e~A~~~  211 (270)
                      ..++|+.++.++|++||++..+|+..+.++.. .+ ++++++++++++|+++|++..+|...++++....+ ++++++.+
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            45789999999999999999999999977774 67 69999999999999999999999999988877337 89999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDE  240 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~e  240 (270)
                      ++++++.+|++..+|...+.++...+..+
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999998888765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.81  E-value=7.2e-08  Score=89.15  Aligned_cols=102  Identities=9%  Similarity=0.034  Sum_probs=93.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD-ASRAES  210 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~-~e~A~~  210 (270)
                      .+++++.++.++++.+|++..+|+..+.++. ..+  ++++++++|.+++++||.|..+|...+.++.. .+. ++++++
T Consensus        89 ~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~  166 (331)
T 3dss_A           89 LVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHH
Confidence            3789999999999999999999999996665 467  59999999999999999999999999987776 888 699999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      ++.++++.+|.|..+|..++.++....
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999998874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.81  E-value=9.2e-09  Score=92.71  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=92.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--------CCCHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSM  193 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--------P~n~~al~~  193 (270)
                      .|...|++++|+.+|++++++.|...      .++.++|.++. ..|++++|+++|++++++.        |....++.+
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  140 (373)
T 1hz4_A           62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI  140 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence            34456789999999999998765432      33667885655 4799999999999999876        334567778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAPD-----DCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~-----~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +|.+++. .|++++|+.++++++++.+.     ...++..++.++...|+.+++....+
T Consensus       141 la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  198 (373)
T 1hz4_A          141 RAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN  198 (373)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8877777 89999999999999998875     24678889999999999988886543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.80  E-value=1.6e-08  Score=91.13  Aligned_cols=117  Identities=14%  Similarity=0.182  Sum_probs=95.4

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPL-----LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLSMYGDL  197 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~-----al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~------~al~~lA~l  197 (270)
                      +...|++++|+.+++++++..|.+..     ++..+|.++. ..|++++|++++++++++.|...      .++.++|.+
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            34568999999999999999886632     5678886665 57999999999999999876432      336788877


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          198 IWQSHKDASRAESYFDQAVKAA--------PDDCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       198 l~~~~g~~e~A~~~~ekAL~~~--------P~~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      ++. .|++++|+.+|++++++.        |....++..++.+++..|+++++....+
T Consensus       103 ~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  159 (373)
T 1hz4_A          103 LFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR  159 (373)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            777 999999999999999875        3346678889999999999999986543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.80  E-value=8.2e-08  Score=88.79  Aligned_cols=107  Identities=10%  Similarity=0.036  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK--  203 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd----------~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g--  203 (270)
                      ++|+.++.++|.+||++..+|+..+.++.. .++          ++++++++.++|..+|.+..+|...++++.. .+  
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~~~  124 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEP  124 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CSSC
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cCcc
Confidence            589999999999999999999999977764 454          7899999999999999999999999988776 77  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHh
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADED-EEDEQ  244 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~-eea~~  244 (270)
                      .+++++.++.++++.+|+|..+|...+.++...+.. +++-+
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            499999999999999999999999999999999984 55443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.80  E-value=7.1e-09  Score=100.50  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=90.0

Q ss_pred             ccCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGN---VLSM  193 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALel-----dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~  193 (270)
                      ..+|++++|+..|+++|++     .|++   ...++++|.++. .+|+|++|+.+|+++|++.     |+++.   .+.+
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4679999999999999986     3444   567788996665 5899999999999999875     56654   5788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHcCCcHHHH
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKA-----APDDCYVL---ASHAHFLWDADEDEEDE  243 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~~~~~---~~la~il~~~Ge~eea~  243 (270)
                      +|.+++. +|++++|+.+|++|+++     .|+|+.+.   ..++.++..++.+++++
T Consensus       399 La~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          399 AGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877776 99999999999999986     57776655   56677777777777776

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.76  E-value=1.3e-07  Score=75.24  Aligned_cols=104  Identities=16%  Similarity=0.167  Sum_probs=86.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDASRAE  209 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~~g~~e~A~  209 (270)
                      +++++|+.+|+++.+.......    +|.++. ..+.+++|+++|++|.+.  +++.+++++|.++..   ..+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5899999999999998754444    884444 467899999999999986  789999999955543   168999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHhc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQV  245 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~~  245 (270)
                      .+|++|.+.  .++.++++++.+|..    .++.+++...
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~  119 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT  119 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence            999999987  689999999999999    7888887753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.73  E-value=1.8e-07  Score=74.43  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=79.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--  201 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--  201 (270)
                      ..|.....+++|+.+|+++.+.  +++.+++++|.++..   +.+|+++|+++|++|.+.  .++.+++++|.++..-  
T Consensus        33 ~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           33 LVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence            4555566788899999999997  899999999955553   158999999999999986  7899999999554431  


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          202 -HKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       202 -~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                       .+++++|+.+|++|.+..  ++.+..+++.
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~~  137 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLG--SEDACGILNN  137 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTT--CHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHCC--CHHHHHHHhh
Confidence             689999999999999974  5666665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.72  E-value=3.9e-09  Score=95.69  Aligned_cols=116  Identities=9%  Similarity=-0.113  Sum_probs=96.8

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n--~~al~~lA~ll~~~~g~~e  206 (270)
                      +...|++++|...|+.++..+|++. +++.+|..++ ..+++++|+.+|++++...++.  ..+++++|.++.. +|+++
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~  188 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFT  188 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHH
Confidence            4556899999999999999999999 9999996555 5899999999999888753221  3588999966665 99999


Q ss_pred             HHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          207 RAESYFDQAVKAA--PD-DCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       207 ~A~~~~ekAL~~~--P~-~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      +|+.+|++++...  |. ...+++.+|.++..+|+.++|....+
T Consensus       189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999998544  55 66799999999999999999986543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.72  E-value=5.6e-08  Score=90.55  Aligned_cols=104  Identities=7%  Similarity=0.012  Sum_probs=95.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH------
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS------  206 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G-d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e------  206 (270)
                      .+++++.+++++|+.+|++..+|+..+.++....+ +++++++++.++|+++|.|..+|...++++.. .+.++      
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~  182 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQ  182 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchhh
Confidence            68999999999999999999999999977764327 99999999999999999999999999987766 67776      


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          207 --RAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       207 --~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                        +++++++++++.+|.|..+|..++.++...+.
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              99999999999999999999999999999886

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.69  E-value=3.9e-08  Score=75.77  Aligned_cols=93  Identities=11%  Similarity=0.095  Sum_probs=76.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN------DGNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~------n~~al~~l  194 (270)
                      ..|...+++++|+.+|++++++.+..      ..++.++|.++. ..|++++|++++++++++.+.      ...++..+
T Consensus        57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  135 (164)
T 3ro3_A           57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL  135 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHH
Confidence            34556789999999999999986553      678889996666 589999999999999988532      25678889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPD  221 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~  221 (270)
                      |.+++. .|++++|+.++++++++...
T Consensus       136 a~~~~~-~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          136 GNAYTA-LGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence            977777 99999999999999988654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.69  E-value=8e-08  Score=90.90  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=72.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR----GDLLKAEEYCARAILMSPNDGNVLSMYGDLIW--QSHKDASR  207 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~----Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~--~~~g~~e~  207 (270)
                      ++++|+.+|+++++..|.++..++++|.++. ..    +++++|+++|++|.   |+++.+++++|.+++  ...+++++
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence            7777888888888887777777777774443 22    47777777777776   777777777776644  33677777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CcHHHHhc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDAD-----EDEEDEQV  245 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~G-----e~eea~~~  245 (270)
                      |+.+|+++++.  .++.+++++|.+|. .|     +.+++...
T Consensus       270 A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          270 MMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            77777777754  36777777777776 44     55555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.68  E-value=5.2e-08  Score=88.72  Aligned_cols=89  Identities=12%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 024243          133 HGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~--n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n-~~al~~lA~ll~~~~g~~  205 (270)
                      .....|...+++++++||+  +..+|..+|.+++.+    .|+.++|.++|+|||+++|+. ..+++.||..+...++++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            4789999999999999999  677999999554431    399999999999999999975 999999998887756999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 024243          206 SRAESYFDQAVKAAPD  221 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~  221 (270)
                      ++|..++++|+..+|.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999999886

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.66  E-value=1e-07  Score=91.02  Aligned_cols=98  Identities=12%  Similarity=0.044  Sum_probs=78.8

Q ss_pred             cCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQA-----DPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGN---VLSMY  194 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALel-----dP~n~---~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~l  194 (270)
                      ..|+|++|+..|+++|++     .|+++   ..+.++|.++. .+|+|++|+.+|+++|++.     |+++.   .+.++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            357899999999999986     45654   56778886665 5899999999999999874     55554   57888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKA-----APDDCYVLASHA  230 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~-----~P~~~~~~~~la  230 (270)
                      |.+++. +|++++|+.+|++|+++     .|+|+.+.....
T Consensus       389 a~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          389 GRLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            877777 99999999999999987     688887765443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.65  E-value=9.6e-08  Score=71.35  Aligned_cols=63  Identities=19%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       183 ldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .+|+++.+++.+|.+++. .|++++|+.+|+++++++|+++.+++.+|.++...|++++|....
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~   64 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY   64 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            589999999999987877 999999999999999999999999999999999999999998643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.65  E-value=1.2e-07  Score=89.59  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=86.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLK--EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-----DA  205 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~--~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-----~~  205 (270)
                      +++++|+.+|+++.   |+++.+++++|.+++  ...+++++|+++|++|++  ++++.+++++|.++.  .|     ++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~--~G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY--EGKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH--HCSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH--cCCCCCCCH
Confidence            68999999999998   999999999997645  457999999999999996  459999999996555  46     99


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ  244 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~  244 (270)
                      ++|+.+|++|.   +.++.+++++|.+|..    ..+.+++..
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~  343 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALD  343 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            99999999999   8899999999988876    236666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.63  E-value=4.4e-07  Score=85.66  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDAS  206 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G---d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~~e  206 (270)
                      +++++|+.+|+++++.  +++.+++++|.++.. .|   ++++|+++|++|++.  +++.+++++|.++...   .++++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  384 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ  384 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            5777777777777765  456677777754443 24   677777777777775  5677777777444431   46777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ  244 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~  244 (270)
                      +|+.+|++|++..  ++.+++++|.+|..    .++.++|..
T Consensus       385 ~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~  424 (490)
T 2xm6_A          385 QAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA  424 (490)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            7888888777753  57777777777777    667666654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.61  E-value=6e-07  Score=68.14  Aligned_cols=78  Identities=12%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMS-------PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY  224 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-------P~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~  224 (270)
                      ++.-.+.+|..++. .++|.+|+..|++|++..       +....++..+|.++++ +|++++|+.+++++++++|++..
T Consensus         4 sa~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            4 TAEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH
Confidence            34556789988885 799999999999999974       3567899999988887 99999999999999999999999


Q ss_pred             HHHHHHH
Q 024243          225 VLASHAH  231 (270)
Q Consensus       225 ~~~~la~  231 (270)
                      ++.++..
T Consensus        82 ~~~n~~~   88 (104)
T 2v5f_A           82 ANGNLKY   88 (104)
T ss_dssp             HHHHHHH
T ss_pred             HHhhHHH
Confidence            9888873

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=8.2e-07  Score=83.76  Aligned_cols=106  Identities=8%  Similarity=0.024  Sum_probs=71.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKD  204 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~----~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~  204 (270)
                      .+++++|+.+|+++++.  +++.+++.+|..+. .    .+++++|+++|++|++.  +++.+++.+|.++...   .++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~  130 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD  130 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence            45777777777777765  56777777774444 3    56777777777777763  4677777777544331   457


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHh
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWD----ADEDEEDEQ  244 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~----~Ge~eea~~  244 (270)
                      +++|+.+|+++++.  +++.+++.+|.+|..    .++.+++..
T Consensus       131 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A          131 KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            77777777777664  467777777777766    556666553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.49  E-value=3.1e-07  Score=87.33  Aligned_cols=97  Identities=13%  Similarity=-0.013  Sum_probs=78.5

Q ss_pred             cCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGN---VLSMY  194 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALel-----dP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~l  194 (270)
                      .++++++|+..|++++++     .|++   ...+.++|.++. .+|+|++|+++|+++|++.     |+++.   .++++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            457999999999999975     4555   466778886665 5899999999999999875     56655   57788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKA-----APDDCYVLASH  229 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~-----~P~~~~~~~~l  229 (270)
                      |.+++. +|++++|+.+|++|+++     .|+|+.+...+
T Consensus       378 a~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          378 GKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            877777 99999999999999987     68888766543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.43  E-value=1.2e-06  Score=82.19  Aligned_cols=114  Identities=8%  Similarity=-0.057  Sum_probs=87.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--hC--C--HHHHH-HHHH--HHHHhCCCCHHHHHHHHHHHHHHcC
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--RG--D--LLKAE-EYCA--RAILMSPNDGNVLSMYGDLIWQSHK  203 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~--~G--d--~~eA~-e~~e--kAIeldP~n~~al~~lA~ll~~~~g  203 (270)
                      .++.+|+.+|++|++++|+++.++..++.++...  .+  .  ...++ ..++  .++..+|.++.++..++.+++. .|
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~g  291 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-KG  291 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-HT
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-CC
Confidence            3568999999999999999999998877555321  11  1  11111 1222  2346679999999999966666 79


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          204 DASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       204 ~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++++|+.++++|+.++| +...+..+|.++...|+.+++.+..+.
T Consensus       292 d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~  335 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLT  335 (372)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999997 578889999999999999999976554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.42  E-value=5.3e-07  Score=81.62  Aligned_cols=103  Identities=8%  Similarity=-0.195  Sum_probs=82.9

Q ss_pred             ccccCCChHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHc
Q 024243          128 WDPNNHGNNSTDLYYQKMIQAD-PRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PN-DGNVLSMYGDLIWQSH  202 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeld-P~n-~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~-n~~al~~lA~ll~~~~  202 (270)
                      .|.+.+++++|+.+|+++++.. |.. ..+++++|.++. ..|++++|+.+|++++...  |. ..++++.+|.++.. +
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-l  221 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-Q  221 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-H
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-c
Confidence            3455689999999999887753 222 358899996666 5899999999999999655  65 66799999966666 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          203 KDASRAESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       203 g~~e~A~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      |+.++|..+|++++..+|+ +.+...+...-
T Consensus       222 Gr~deA~~~l~~a~a~~P~-~~~~~aL~~~~  251 (282)
T 4f3v_A          222 GNESAAVALLEWLQTTHPE-PKVAAALKDPS  251 (282)
T ss_dssp             TCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence            9999999999999999998 88777765433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.33  E-value=9.9e-07  Score=80.86  Aligned_cols=117  Identities=10%  Similarity=0.030  Sum_probs=91.7

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHH
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMY--GDL  197 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP--~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----n~~al~~l--A~l  197 (270)
                      +..|...|++++|+..+.+.+..+|  ++..++..++.++. ..|+.++|.+.+++..+.+|+    +-.++..+  +++
T Consensus       107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v  185 (310)
T 3mv2_B          107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI  185 (310)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence            3455667899999999999999997  88888888886666 589999999999999999993    23333344  544


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHhccC
Q 024243          198 IWQSHK--DASRAESYFDQAVKAAPD--DCYVLASHAHFLWDADEDEEDEQVGE  247 (270)
Q Consensus       198 l~~~~g--~~e~A~~~~ekAL~~~P~--~~~~~~~la~il~~~Ge~eea~~~~e  247 (270)
                      .+. .|  ++++|..+|+++.+..|+  ....+++   ++..+|++++|+..++
T Consensus       186 ~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          186 KFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred             HHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence            555 45  899999999999988886  3445555   8999999999997643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.30  E-value=2.4e-06  Score=64.76  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=58.7

Q ss_pred             ccccCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQAD-------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeld-------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .+..+++|..|+..|++|++..       +..+.++..+|.+++. .|++++|+.++++|++++|++..++.++.
T Consensus        14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            3455689999999999999973       3457899999988874 89999999999999999999999988887

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.30  E-value=1.6e-06  Score=78.88  Aligned_cols=85  Identities=12%  Similarity=0.060  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCc
Q 024243          169 DLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSH-----KDASRAESYFDQAVKAAPDD-CYVLASHAHFLWDA-DED  239 (270)
Q Consensus       169 d~~eA~e~~ekAIeldP~--n~~al~~lA~ll~~~~-----g~~e~A~~~~ekAL~~~P~~-~~~~~~la~il~~~-Ge~  239 (270)
                      ...+|...++|||++||+  +..+|..+|.++.. .     |+.++|..+|++|++++|+. ..+++.+|..+... ++.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            358899999999999999  77799999955554 5     99999999999999999975 99999999999885 888


Q ss_pred             HHHHhccCCCCCCCC
Q 024243          240 EEDEQVGEEPAPPSY  254 (270)
Q Consensus       240 eea~~~~e~~~~~~p  254 (270)
                      ++++..++.....||
T Consensus       257 ~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          257 AGFDEALDRALAIDP  271 (301)
T ss_dssp             HHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHHcCCC
Confidence            998887766333343

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.20  E-value=1.6e-05  Score=63.72  Aligned_cols=99  Identities=11%  Similarity=0.015  Sum_probs=84.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMS-P-NDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G---d~~eA~e~~ekAIeld-P-~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      ....+...|.+.+..++....+.++||..|.. ..   +..+++.+++..+..+ | ...+.++.+|..+++ .|+|++|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            46678889999999999999999999977763 34   4456999999999987 6 677899999977777 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      ..+++.+|++.|++.++......+--
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999998877766543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.18  E-value=3.6e-06  Score=63.30  Aligned_cols=64  Identities=11%  Similarity=0.017  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          184 SPNDGNVLSMYGDLIWQSHKD---ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       184 dP~n~~al~~lA~ll~~~~g~---~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|++++++..+|.+++. .++   .++|..+|++|++++|+++.+++.+|.+++..|++++|...-+.
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL   68 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            69999999999999876 444   79999999999999999999999999999999999999976555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.15  E-value=1.5e-05  Score=80.15  Aligned_cols=108  Identities=11%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024243          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE-EYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~-e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ek  214 (270)
                      +.....|+++|...|.++.+|..+|.++. ..|+.++|. +.|++|+...|.+...|..++.+... .+++++|..+|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            45678999999999999999999997776 479999997 99999999999999999999977666 9999999999999


Q ss_pred             HHHh-----------CCC-----------CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          215 AVKA-----------APD-----------DCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       215 AL~~-----------~P~-----------~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +++.           .|.           .+.+|..++.+..+.++.+.+...
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v  456 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI  456 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9975           253           456899999998888888877754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.13  E-value=2.3e-06  Score=78.37  Aligned_cols=110  Identities=13%  Similarity=0.011  Sum_probs=84.7

Q ss_pred             cccccccCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHH-HHHhhC--CHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARF-LKEARG--DLLKAEEYCARAILMSPN--DGNVLSMYG  195 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeldP~----n~~al~~lA~~-l~~~~G--d~~eA~e~~ekAIeldP~--n~~al~~lA  195 (270)
                      ....|-.+|+.+.|.+.++++.+.+|+    +-..+..++.. +....|  ++.+|..+|+++.+..|+  ....+++  
T Consensus       142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--  219 (310)
T 3mv2_B          142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--  219 (310)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--
Confidence            345566679999999999999999993    22333344422 222346  999999999999988886  3444444  


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCC
Q 024243          196 DLIWQSHKDASRAESYFDQAVKA----------APDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~----------~P~~~~~~~~la~il~~~Ge  238 (270)
                       ++.. +|++++|...++++++.          +|+++.++.++..+...+|+
T Consensus       220 -~~~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          220 -LHLQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             -HHHH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             -HHHH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence             4555 99999999999988876          59999999999999999997

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.12  E-value=7.8e-06  Score=74.45  Aligned_cols=115  Identities=8%  Similarity=0.010  Sum_probs=90.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADP------RNPLLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYG  195 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP------~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel------dP~n~~al~~lA  195 (270)
                      ++...+++++|+.++++++...+      .-..++.++|.++. ..|+|.+|..++++++..      .+...+++..++
T Consensus       104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
T 4b4t_Q          104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES  182 (434)
T ss_dssp             HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            34456789999999999988643      23678889996666 489999999999999876      344567888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCcHHHHh
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAAP---DD----CYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~P---~~----~~~~~~la~il~~~Ge~eea~~  244 (270)
                      .++.. .+++++|..+|++++.+.+   +.    ..++..++.++...++++++..
T Consensus       183 ~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          183 KVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88887 9999999999999998743   22    3456677888888888888864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=4.5e-06  Score=76.03  Aligned_cols=117  Identities=8%  Similarity=0.032  Sum_probs=94.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSP------NDGNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP------~n~~al~~l  194 (270)
                      ..|...|++++|+.+|+++++..+...      .+...++ .++...|++++|+++|++++...+      .-..++..+
T Consensus        63 ~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  141 (434)
T 4b4t_Q           63 QLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIE-KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL  141 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHH-HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            456778899999999999998866543      2344556 344457999999999999998754      236788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKA------APDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~------~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |.++.. .|++++|..++++++..      .+....++..++.++..+|+++++...
T Consensus       142 a~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  197 (434)
T 4b4t_Q          142 ATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKAS  197 (434)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            988887 99999999999999876      333467999999999999999998854

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.07  E-value=2.5e-05  Score=73.19  Aligned_cols=81  Identities=10%  Similarity=-0.033  Sum_probs=68.3

Q ss_pred             HHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024243          146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV  225 (270)
Q Consensus       146 LeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~  225 (270)
                      +..+|.++.++..++..+. ..|++++|+.++++|++++| +..+|..+|.++.. .|++++|++.|++|+.++|... .
T Consensus       270 ~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~-t  345 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGAN-T  345 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHH-H
T ss_pred             cccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcC-h
Confidence            3568999999999985555 47999999999999999997 57788888977776 9999999999999999999765 4


Q ss_pred             HHHHH
Q 024243          226 LASHA  230 (270)
Q Consensus       226 ~~~la  230 (270)
                      ++...
T Consensus       346 ~~~~~  350 (372)
T 3ly7_A          346 LYWIE  350 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.04  E-value=7.7e-06  Score=77.96  Aligned_cols=78  Identities=9%  Similarity=0.012  Sum_probs=65.2

Q ss_pred             hCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 024243          167 RGDLLKAEEYCARAILMS-----PNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA-----APDD---CYVLASHA  230 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeld-----P~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~---~~~~~~la  230 (270)
                      .|+|++|+++|++++++.     |+++.   ++.++|.++.. +|+|++|+.+++++|++     .|++   ...+.++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            478999999999999963     66664   56778866766 99999999999999987     3444   55788999


Q ss_pred             HHHHHcCCcHHHHhc
Q 024243          231 HFLWDADEDEEDEQV  245 (270)
Q Consensus       231 ~il~~~Ge~eea~~~  245 (270)
                      .+|+.+|++++|+..
T Consensus       390 ~~~~~qg~~~eA~~~  404 (433)
T 3qww_A          390 RLYMGLENKAAGEKA  404 (433)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHhccCHHHHHHH
Confidence            999999999999854

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.02  E-value=1.3e-05  Score=77.54  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=66.3

Q ss_pred             hhCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMS-----PNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKA-----APDD---CYVLASH  229 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeld-----P~n~---~al~~lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~---~~~~~~l  229 (270)
                      .+|+|++|+.+|++++++.     |+++   .++.++|.++.. +|+|++|+.+++++|++     .|+|   ...+.++
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5799999999999999875     5555   467788866666 99999999999999987     3555   5578899


Q ss_pred             HHHHHHcCCcHHHHhc
Q 024243          230 AHFLWDADEDEEDEQV  245 (270)
Q Consensus       230 a~il~~~Ge~eea~~~  245 (270)
                      |.+|+.+|++++|+..
T Consensus       400 a~~~~~~G~~~eA~~~  415 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGM  415 (490)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHH
Confidence            9999999999999853

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.00  E-value=2.5e-05  Score=78.44  Aligned_cols=121  Identities=13%  Similarity=0.094  Sum_probs=99.9

Q ss_pred             cccccCCChHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh-
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQA-----------DPR-----------NPLLLSNYARFLKEARGDLLKAEEYCARAILM-  183 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALel-----------dP~-----------n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIel-  183 (270)
                      .+++..+++++|...|+++++.           .|.           ...+|..++++... .++.+.|.+.|.+|++. 
T Consensus       386 ~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~  464 (679)
T 4e6h_A          386 EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLK  464 (679)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTG
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            3456789999999999999975           353           45689999977664 69999999999999998 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          184 SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       184 dP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      .+....+|...|.+-+...+++++|..+|+++++..|+++.++..++.+++..|+.+.+...-+.
T Consensus       465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer  529 (679)
T 4e6h_A          465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES  529 (679)
T ss_dssp             GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            44567788888866666335699999999999999999999999999999999999888865444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.90  E-value=3.3e-05  Score=82.91  Aligned_cols=105  Identities=15%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      +++..+++++|.+++++     .+.+.+|+++|.++. ..|++++|++.|.+|     +|+..+...+..+.+ .|++++
T Consensus      1085 Lie~i~nldrAiE~Aer-----vn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEE 1152 (1630)
T 1xi4_A         1085 LIEHIGNLDRAYEFAER-----CNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEE 1152 (1630)
T ss_pred             HHHHHhhHHHHHHHHHh-----cCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHH
Confidence            33344455555555553     477899999997666 479999999999886     888999999976666 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |+++|..|.+..++ +.+...++.+|.++++.++-+..
T Consensus      1153 AIeyL~mArk~~~e-~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A         1153 LVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred             HHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHHHHHH
Confidence            99999999888753 33344577777777766654444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.84  E-value=0.0001  Score=79.17  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=80.4

Q ss_pred             ccccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------------------
Q 024243          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------------------  187 (270)
Q Consensus       126 g~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------------------  187 (270)
                      |..|+..|++++|+.+|.++     +++..+..++.++. ..|+|++|+++|+.|++.+++.                  
T Consensus      1112 AKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A         1112 AKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence            34557789999999999886     88999999997776 5899999999999988777432                  


Q ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          188 ---------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       188 ---------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                               ...+...|..++. .|+|++|..+|.+|        ..|..++.+|.++|++++|.+.
T Consensus      1186 le~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A         1186 LEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence                     2234456655555 78888888888875        4777788888888887777754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.83  E-value=2.6e-05  Score=74.06  Aligned_cols=79  Identities=10%  Similarity=-0.059  Sum_probs=65.4

Q ss_pred             hhCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMS-----PNDGN---VLSMYGDLIWQSHKDASRAESYFDQAVKA-----APDD---CYVLASH  229 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeld-----P~n~~---al~~lA~ll~~~~g~~e~A~~~~ekAL~~-----~P~~---~~~~~~l  229 (270)
                      .+|+|++|+++|++++++.     |+++.   ++.++|.++.. +|++++|+.++++++++     .|++   ...+.++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            4799999999999999864     66654   56777766666 99999999999999977     3455   4568899


Q ss_pred             HHHHHHcCCcHHHHhc
Q 024243          230 AHFLWDADEDEEDEQV  245 (270)
Q Consensus       230 a~il~~~Ge~eea~~~  245 (270)
                      |.+|+.+|++++|...
T Consensus       378 a~~~~~~g~~~eA~~~  393 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKN  393 (429)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHH
Confidence            9999999999999854

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=2.3e-05  Score=64.65  Aligned_cols=87  Identities=13%  Similarity=0.003  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHH
Q 024243          168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK---DASRAESYFDQAVKAA-P-DDCYVLASHAHFLWDADEDEED  242 (270)
Q Consensus       168 Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g---~~e~A~~~~ekAL~~~-P-~~~~~~~~la~il~~~Ge~eea  242 (270)
                      .....+.+.|+++++.++.+.++.++||+++.+ .+   ++++++.+|+.+++.+ | ++.+.+|++|..+++.+++++|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            346778889999999999999999999988877 66   6779999999999999 7 6799999999999999999999


Q ss_pred             HhccCCCCCCCCC
Q 024243          243 EQVGEEPAPPSYN  255 (270)
Q Consensus       243 ~~~~e~~~~~~p~  255 (270)
                      ....+.+....|.
T Consensus        91 ~~y~~~lL~ieP~  103 (152)
T 1pc2_A           91 LKYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCC
Confidence            9765553333443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.70  E-value=0.00041  Score=66.65  Aligned_cols=51  Identities=16%  Similarity=0.121  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH
Q 024243          137 STDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN  189 (270)
Q Consensus       137 eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~  189 (270)
                      .....|++++...|..+.+|..|+.++. ..|+.++|.+.|++|+.. |.+..
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~  247 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMF  247 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHH
Confidence            3444555555555555555555554443 245555555555555555 54433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.64  E-value=0.00089  Score=54.59  Aligned_cols=96  Identities=13%  Similarity=-0.038  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          138 TDLYYQKMIQA---DPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSP-NDGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       138 A~~~y~kALel---dP~n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP-~n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      -+..+++-+..   +.-.+...++||.+|....  .+..+++.+++..+..+| ...+.++.+|.-+++ +|+|++|..+
T Consensus        21 eL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y   99 (144)
T 1y8m_A           21 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRY   99 (144)
T ss_dssp             HHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHH
Confidence            34444444433   3567899999998877532  356789999999999999 566899999966777 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      .+.+|++.|+|.++......+--
T Consensus       100 ~d~lL~~eP~n~QA~~Lk~~Ie~  122 (144)
T 1y8m_A          100 VDTLFEHERNNKQVGALKSMVED  122 (144)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHH
Confidence            99999999999998887766653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.57  E-value=0.00015  Score=69.42  Aligned_cols=97  Identities=14%  Similarity=0.016  Sum_probs=58.2

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      +...|.+++|+.+|.++        ..|..+|.++. ..|+|++|++.|++|     +++.+|......+.. .|+++.|
T Consensus       132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA  196 (449)
T 1b89_A          132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLA  196 (449)
T ss_dssp             -----CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHH
Confidence            34457899999999977        46678887777 479999999999988     467776665555554 5555555


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..+..+ +..   ++.....+..+|.+.|+++++..
T Consensus       197 ~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~  228 (449)
T 1b89_A          197 QMCGLH-IVV---HADELEELINYYQDRGYFEELIT  228 (449)
T ss_dssp             HHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHH
Confidence            444443 112   22223344455555555555543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.48  E-value=0.00058  Score=55.04  Aligned_cols=84  Identities=14%  Similarity=-0.029  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          152 NPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSP-NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       152 n~~al~~lA~~l~~~~--Gd~~eA~e~~ekAIeldP-~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      .+...++||.+|....  .+..+++.+++..++.+| ...+.++.+|.-+++ +|+|++|..+.+.+|++.|+|.++...
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            5788899998777543  356789999999999999 457899999976777 999999999999999999999999887


Q ss_pred             HHHHHHHc
Q 024243          229 HAHFLWDA  236 (270)
Q Consensus       229 la~il~~~  236 (270)
                      ...|--+.
T Consensus       118 k~~Ie~ki  125 (134)
T 3o48_A          118 KSMVEDKI  125 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.47  E-value=0.00088  Score=55.31  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          136 NSTDLYYQKMIQADPRN--------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       136 ~eA~~~y~kALeldP~n--------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      ++-+..|++|+..-|-.        ...|..|| .+. ..+|.++|.+.|+.++.+....+.+|..+|..-.+ +|+..+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~k  112 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELK-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVKK  112 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHH-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHH-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHHH
Confidence            78889999999987653        57788888 444 36999999999999999988999999999988888 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      |..++.+|+.+.|.....+.. +..-.+.|.
T Consensus       113 ARkILg~AiG~~~k~~~~le~-a~~nl~~~~  142 (161)
T 4h7y_A          113 SKQLLQKAVERGAVPLEMLEI-ALRNLNLQK  142 (161)
T ss_dssp             HHHHHHHHHHTTCBCHHHHHH-HHHHHHTTC
T ss_pred             HHHHHHHHhccCCCcHHHHHH-HHHhhhcCC
Confidence            999999999999987665543 434445554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.45  E-value=0.00062  Score=56.20  Aligned_cols=97  Identities=18%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             HHhCCCCHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHH
Q 024243          146 IQADPRNPLLLSNYARFLKEARGDL------LKAEEYCARAILMSPN--------DGNVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       146 LeldP~n~~al~~lA~~l~~~~Gd~------~eA~e~~ekAIeldP~--------n~~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      +-..|+|++.|..|...+- ..|+.      ++-.+.|++|+..-|-        ....|..|| ++.. .++.++|.+.
T Consensus         6 ~~~~p~~yd~W~~yl~llE-~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~e-i~D~d~aR~v   82 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLE-KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKA-IQEPDDARDY   82 (161)
T ss_dssp             ----CCSHHHHHHHHHHHH-HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHH-HHCGGGCHHH
T ss_pred             eeeCCCCHHHHHHHHHHHH-HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHH-hcCHHHHHHH
Confidence            3468999999999995554 56988      8889999999998874        556788888 4444 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |+.|+.++...+.+|..+|.+-.++|+...|..-
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI  116 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQL  116 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999999999999999999999999999998853

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.18  E-value=0.0016  Score=62.35  Aligned_cols=96  Identities=7%  Similarity=-0.058  Sum_probs=77.9

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      ...|++++|+..|+++     +++..|.....++.. .|+++.|..+..+ |..+|++   +..+..++ +..|++++|+
T Consensus       159 ~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Y-ek~G~~eEai  227 (449)
T 1b89_A          159 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHADE---LEELINYY-QDRGYFEELI  227 (449)
T ss_dssp             HTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCHHH---HHHHHHHH-HHTTCHHHHH
T ss_pred             HHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCHhh---HHHHHHHH-HHCCCHHHHH
Confidence            3458999999999999     589999988866664 7999999887775 4455544   44555444 5599999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      .++++++.+++.+..++..++.+|.+-
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999888654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.13  E-value=0.0013  Score=54.91  Aligned_cols=52  Identities=17%  Similarity=0.094  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC
Q 024243          132 NHGNNSTDLYYQKMIQADPRNP---------LLLSNYARFLKEARGDLLKAEEYCARAILMS  184 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~---------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld  184 (270)
                      .+.|+.|+.....++.+..+++         .++..+|..++. +++|.+|+.+|++||+..
T Consensus        33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHH
Confidence            4789999999998777654443         377788988885 799999999999987654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.07  E-value=0.0034  Score=60.18  Aligned_cols=108  Identities=11%  Similarity=0.097  Sum_probs=86.4

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      .+++.+.|...|++| +..+....+|...|..-+...++.+.|..+|+++++..|+++..+..++.+... .|+.++|..
T Consensus       298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~-~~~~~~aR~  375 (493)
T 2uy1_A          298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR-IGDEENARA  375 (493)
T ss_dssp             HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            356789999999999 433345677777775555433479999999999999999999999999976666 899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      +|+++    +....++..+..+-...|+.+....
T Consensus       376 l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~  405 (493)
T 2uy1_A          376 LFKRL----EKTSRMWDSMIEYEFMVGSMELFRE  405 (493)
T ss_dssp             HHHHS----CCBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            99998    4567888888888888888766653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.76  E-value=0.0049  Score=51.42  Aligned_cols=87  Identities=15%  Similarity=0.125  Sum_probs=69.6

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----
Q 024243          160 ARFLKEARGDLLKAEEYCARAILMSPNDGN---------VLSMYGDLIWQSHKDASRAESYFDQAVKAA---PDD-----  222 (270)
Q Consensus       160 A~~l~~~~Gd~~eA~e~~ekAIeldP~n~~---------al~~lA~ll~~~~g~~e~A~~~~ekAL~~~---P~~-----  222 (270)
                      ...++. .+.|+-|+-+...++.+..++++         ++..+|+.++. .++|.+|..+|++||+..   +++     
T Consensus        27 ik~L~d-~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           27 VRDMAA-AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHH-hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            335664 69999999999998777655444         88999999999 999999999999997552   211     


Q ss_pred             -----------------HHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          223 -----------------CYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       223 -----------------~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                                       .++.+.++.++..+++.++|...++-
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                             26889999999999999999977554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.011  Score=59.98  Aligned_cols=109  Identities=14%  Similarity=0.099  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHH
Q 024243          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEA-RGDLLKAEEYCARAILM--------SPNDG----------NVLSMYG  195 (270)
Q Consensus       135 ~~eA~~~y~kALeldP~n~~al~~lA~~l~~~-~Gd~~eA~e~~ekAIel--------dP~n~----------~al~~lA  195 (270)
                      ++.|+.++++..+.+|.....+......+... ..+--+|+++..++++-        .+.+.          ..+..-+
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            57899999999999998765443221112111 23456788888888742        23332          2444445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          196 DLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       196 ~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ..+.. .++++-|+.+.++|+...|.+...|+.|+.+|..+|+++.|--
T Consensus       345 ~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL  392 (754)
T 4gns_B          345 NFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF  392 (754)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence            55555 8999999999999999999999999999999999999999974

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.62  E-value=0.0033  Score=50.08  Aligned_cols=62  Identities=8%  Similarity=0.008  Sum_probs=53.6

Q ss_pred             CChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQAD-P-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       133 gd~~eA~~~y~kALeld-P-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .+..+++..++..++.+ | ..-..++.+|...+ ..|+|++|.++++..|+++|+|.++.....
T Consensus        52 ~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           52 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35677999999999987 6 57788999997777 589999999999999999999999986655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.49  E-value=0.079  Score=50.82  Aligned_cols=112  Identities=17%  Similarity=0.047  Sum_probs=89.3

Q ss_pred             CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      .++++.|...|+++.+..- -|...++.+...+. ..|++++|.++|++..+..  | |...|..+-..+.+ .|+.++|
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~-~g~~~~A  159 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCR-KGDADKA  159 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHH-CCCHHHH
Confidence            4578999999999988742 24566666665666 4799999999999988764  5 66677666656666 9999999


Q ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          209 ESYFDQAVKAAP-DDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       209 ~~~~ekAL~~~P-~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      ..+|++..+..- .+...+..+-..+.+.|+.+++...+
T Consensus       160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll  198 (501)
T 4g26_A          160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL  198 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            999999987642 27888999999999999999998643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.43  E-value=0.013  Score=47.67  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=54.2

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .+..+++..++..++.+|. .-+.++.+|...+ ..|+|++|.++++..|+++|+|.++.....
T Consensus        56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            4778999999999999995 5688888997777 589999999999999999999999886655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.42  E-value=0.0092  Score=47.98  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=54.6

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~-n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .+...++..++..++.+|. .-+.++.+|...+ ..|+|++|.++++++++++|+|..+.....
T Consensus        57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3778999999999999995 4788889997777 489999999999999999999999986665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.25  E-value=0.066  Score=47.91  Aligned_cols=63  Identities=21%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .++.++|++.+...++.+|.|+.....|-..|+ ..|++++|.+.++-+.+++|........|-
T Consensus        10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            468999999999999999999999999998888 479999999999999999998776654544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.92  E-value=0.042  Score=53.11  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW  234 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~  234 (270)
                      .+..+|. +.+....+..|..+|++|+.++|+++..+..+|.+... .++.-+|+-+|-+++......+.+..++..++-
T Consensus       154 ~l~~LGD-L~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGD-IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHccc-HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            4456773 33446889999999999999999999999999955544 899999999999999887779999999998876


Q ss_pred             Hc
Q 024243          235 DA  236 (270)
Q Consensus       235 ~~  236 (270)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.65  E-value=0.36  Score=46.21  Aligned_cols=113  Identities=8%  Similarity=-0.013  Sum_probs=85.4

Q ss_pred             cCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH--------hhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKE--------ARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIW  199 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP-~n~~al~~lA~~l~~--------~~Gd~~eA~e~~ekAIeld--P~n~~al~~lA~ll~  199 (270)
                      +.|++++|+.+|+++.+..- -+...++.+-..+..        ..+++++|.++|++..+..  | |..+|..+-..+.
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~  116 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAV  116 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Confidence            35799999999999998732 234444444423321        1234789999999988765  4 7777877776777


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          200 QSHKDASRAESYFDQAVKAA-PDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       200 ~~~g~~e~A~~~~ekAL~~~-P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      + .|++++|..+|++..+.. ..+...+..+-..|.+.|+.+++...
T Consensus       117 ~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A          117 A-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             H-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            7 999999999999988763 23788889999999999999999864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.52  E-value=0.12  Score=47.83  Aligned_cols=99  Identities=10%  Similarity=-0.034  Sum_probs=71.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNP----------------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~----------------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~a  190 (270)
                      ++.+.|...|++|+.+.....                      .++..++..+. ..|++.+|+..+++++..+|-+..+
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            467778888888888753321                      12223343334 4799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHH
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKA-------APDDCYVLASHAHFLW  234 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~-------~P~~~~~~~~la~il~  234 (270)
                      +..+-.+++. .|+..+|+..|+++-+.       .| .+.....+..++.
T Consensus       208 ~~~lm~al~~-~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~il~  256 (388)
T 2ff4_A          208 WTQLITAYYL-SDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERILR  256 (388)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHc
Confidence            9888877877 99999999999986543       45 4555555555553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.18  Score=51.14  Aligned_cols=59  Identities=15%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA  215 (270)
                      .+..-+.++. .+|+|+-|+++.++|+..-|.+-..|+.||.+|.. +|+|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            4444466676 47999999999999999999999999999988888 99999999776654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.50  E-value=0.35  Score=43.16  Aligned_cols=63  Identities=27%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                      ..|++++|++.+...|+.+|.|......|-.++.. .|++++|..-++-+.+++|+.......+
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            36999999999999999999999999999988887 9999999999999999999765544343

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.26  E-value=0.6  Score=45.50  Aligned_cols=94  Identities=15%  Similarity=0.019  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHH------------HHHHcCCHHHH
Q 024243          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARA--------ILMSPNDGNVLSMYGDL------------IWQSHKDASRA  208 (270)
Q Consensus       149 dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA--------IeldP~n~~al~~lA~l------------l~~~~g~~e~A  208 (270)
                      .-++...|..+|.... ..++++.|+++|.++        |....++.+.+..++.+            ++...|++++|
T Consensus       677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a  755 (814)
T 3mkq_A          677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGA  755 (814)
T ss_dssp             TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred             hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHH
Confidence            4456788888885555 478888888888875        21224444544444332            22225666666


Q ss_pred             HHHHHH------HHHh----CCCC---HHHHHHHHHHHHHcCCcHHHH
Q 024243          209 ESYFDQ------AVKA----APDD---CYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       209 ~~~~ek------AL~~----~P~~---~~~~~~la~il~~~Ge~eea~  243 (270)
                      +++|.+      |+.+    .|..   +.+...++.-+...|+++.++
T Consensus       756 ~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~  803 (814)
T 3mkq_A          756 KDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSE  803 (814)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred             HHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHH
Confidence            665543      2221    2322   255566666666666644443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.73  E-value=0.23  Score=47.90  Aligned_cols=65  Identities=20%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI  198 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll  198 (270)
                      ..++.|..+|.+|+.++|++...++.+| ++....|+.-+|+-+|-|++....-.+.+..++..++
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLa-vla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLA-ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHH-HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHH-HHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            3578999999999999999999999999 6665689999999999999987766888888887544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.63  E-value=0.61  Score=45.47  Aligned_cols=68  Identities=16%  Similarity=0.050  Sum_probs=45.7

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCC
Q 024243          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA--------VKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       167 ~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekA--------L~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      .|++++|.++++     .-++...|..+|..+.+ .++++.|+.+|.++        |.....+...+..++.+....|+
T Consensus       665 ~~~~~~A~~~~~-----~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~  738 (814)
T 3mkq_A          665 VGQLTLARDLLT-----DESAEMKWRALGDASLQ-RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK  738 (814)
T ss_dssp             HTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHH-----hhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            577777777653     34788999999988887 99999999999985        22224445544455444443333


Q ss_pred             cH
Q 024243          239 DE  240 (270)
Q Consensus       239 ~e  240 (270)
                      .+
T Consensus       739 ~~  740 (814)
T 3mkq_A          739 FN  740 (814)
T ss_dssp             HH
T ss_pred             hH
Confidence            33

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.33  E-value=1.2  Score=37.16  Aligned_cols=43  Identities=12%  Similarity=0.005  Sum_probs=27.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA  180 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekA  180 (270)
                      .|+++.|....++.     ++...|..+|.... .+|+++-|+++|+++
T Consensus        18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             TTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            35666666665543     56667777775554 367777777777665

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.06  E-value=1.1  Score=42.00  Aligned_cols=93  Identities=11%  Similarity=0.013  Sum_probs=63.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC--CCCHHH---HHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNV---LSMYGDLI  198 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n---~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld--P~n~~a---l~~lA~ll  198 (270)
                      .+|...|++++|.+.|.++.......   ..++....+.... .+|+..+..++.+|-.+-  ..+...   +..+..++
T Consensus       139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~  217 (429)
T 4b4t_R          139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIH  217 (429)
T ss_dssp             HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Confidence            56667789999999999988874333   3555555545553 699999999999986553  223332   22333344


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC
Q 024243          199 WQSHKDASRAESYFDQAVKAAP  220 (270)
Q Consensus       199 ~~~~g~~e~A~~~~ekAL~~~P  220 (270)
                      ....++|.+|-.+|..++....
T Consensus       218 ~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          218 CLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHhChHHHHHHHHHHHhccCC
Confidence            4448999999999998887654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.83  E-value=2  Score=40.19  Aligned_cols=93  Identities=13%  Similarity=0.037  Sum_probs=64.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhC---CCCH---HHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADP--RN----PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PNDG---NVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP--~n----~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeld---P~n~---~al~~l  194 (270)
                      .+|...|+|.+|...+.++++.-.  ++    .+++..-.++++ ..+|+.++..+|.+|....   +-++   ..+...
T Consensus       107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~  185 (394)
T 3txn_A          107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ  185 (394)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence            355667899999999999887521  22    233334444445 4799999999999997654   1233   334445


Q ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHhCC
Q 024243          195 GDLIWQ-SHKDASRAESYFDQAVKAAP  220 (270)
Q Consensus       195 A~ll~~-~~g~~e~A~~~~ekAL~~~P  220 (270)
                      +.++.. ..++|.+|..+|-.+++...
T Consensus       186 ~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          186 SGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            556666 59999999999999986544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.43  E-value=1.4  Score=40.58  Aligned_cols=51  Identities=8%  Similarity=-0.097  Sum_probs=45.8

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL  182 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe  182 (270)
                      ..|++++++..+++++..+|-+..++..+-.+++. .|+..+|++.|++.-+
T Consensus       183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            35899999999999999999999999999988884 7999999999988755

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.62  E-value=4.4  Score=42.57  Aligned_cols=100  Identities=11%  Similarity=-0.085  Sum_probs=71.2

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH---hC--------------------CCCHHHHHHHHHHHHHH
Q 024243          145 MIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL---MS--------------------PNDGNVLSMYGDLIWQS  201 (270)
Q Consensus       145 ALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIe---ld--------------------P~n~~al~~lA~ll~~~  201 (270)
                      .+..-|.++...+.+|+++. ..|++++|.++|++|-.   .+                    ..-+..|.... .++..
T Consensus       834 l~~~~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~-~LFe~  911 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS-KKLFE  911 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHH-HHHHH
T ss_pred             HhhhccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHH-HHHHH
Confidence            34456788888889997777 48999999999988721   11                    11223444555 35555


Q ss_pred             cCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCcHHHHhcc
Q 024243          202 HKDASRAESYFDQAVKAAP-DDCY----VLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       202 ~g~~e~A~~~~ekAL~~~P-~~~~----~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .+.++.++.....|++..+ ++..    .|.++=..+.+.+++++|...+
T Consensus       912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL  961 (1139)
T 4fhn_B          912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL  961 (1139)
T ss_dssp             TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred             cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence            9999999999999998865 4442    4566667788889999987543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=80.76  E-value=25  Score=29.71  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=34.1

Q ss_pred             hhCCHHHHHHHHHHHHH--h---------------CCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024243          166 ARGDLLKAEEYCARAIL--M---------------SPNDGNVL-SMYGDLIWQSHKDASRAESYFDQAVKAAPDDC  223 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIe--l---------------dP~n~~al-~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~  223 (270)
                      ...||.+|+..++..|+  .               ||.|.+.. ..+|.++-+ .|+.++|+.+|.......|-.+
T Consensus        74 klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A           74 KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCccccc
Confidence            35777777777777762  1               24555543 334433333 7777777777777777766433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
              + I+A P++  L S++   L    GD  +A+E   ++I + P      S    L+  
Sbjct: 18  LLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 76

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE 248
           +      A+      V    ++        +    + + E+  ++  +
Sbjct: 77  AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV 225
           + G L +A E    AI  SP D ++ S + +L      D  RA+    Q++K  P+    
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 226 LASHAHFLWDADEDEEDEQVGEEPAPPSYN 255
            +   H +  A   ++  Q          N
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGEN 96

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 34/115 (29%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKE---------------------------------AR 167
            Y++ I+  P  P    N A  LKE                                  +
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
           G++ +A     +A+ + P      S     + Q       A  ++ +A++ +P  
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  ++ + +P N  +L   +    +    L ++  +   AI  +P      S  G++  +
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79

Query: 201 SH 202
             
Sbjct: 80  RG 81

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVL 226
            GD   AE +C +     P++  VL +    I    +   R+  +   A+K  P      
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 227 ASHAHFLW 234
           ++  +   
Sbjct: 71  SNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y+K ++  P      SN A  L++ +G L +A  +   AI +SP   +  S  G+ + +
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y + +   P + ++  N A    E +G +  A +   RAI + P+  +      +   +
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLAN-ALK 282

Query: 201 SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEE 241
                + AE  ++ A++  P     L + A+   +    EE
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYG-DL 197
            +Q    A   +      YA  L       D+ K        +     +     ++   +
Sbjct: 21  KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80

Query: 198 IWQSHKDASRAESYFDQAVKAAPDD 222
                K+  +A  Y    ++  P +
Sbjct: 81  GNYRLKEYEKALKYVRGLLQTEPQN 105

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEA-----RGDLLKAEEYCARAILMSPNDGNVLSMYGD 196
           Y K  Q +  NPL   ++ +  +E       GDL  A      A+   P         G 
Sbjct: 4   YDKGYQFEEENPL--RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG- 60

Query: 197 LIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLW 234
                ++    A S   + ++  PD+   L + A    
Sbjct: 61  TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.51
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.46
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.45
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.17
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.05
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.03
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.03
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.99
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.98
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.98
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.95
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.93
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.76
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.73
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.69
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.55
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.49
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.49
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.34
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.94
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.82
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.7
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.67
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.5

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-16  Score=123.06  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=95.9

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      +...|++++|+.+|+++|+.+|+++.+|.++|.++. .+|++++|++.|+++|+++|+++.+|+++|.++.. +|++++|
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~~A   90 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEA   90 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCHHHH
Confidence            455689999999999999999999999999997666 58999999999999999999999999999976666 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFL  233 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il  233 (270)
                      +.+|+++++++|+++.++..++.+.
T Consensus        91 ~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          91 KRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999998775

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.2e-16  Score=125.69  Aligned_cols=108  Identities=13%  Similarity=-0.028  Sum_probs=98.4

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      -|...|+|++|+.+|+++++++|+++.+|+++|.++. ..|++++|++.|++||+++|++..+|..+|.++.. +|++++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~~e   96 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRA   96 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCHHH
Confidence            4556789999999999999999999999999997776 47999999999999999999999999999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      |+.+|+++++++|+++.++..++.+....+
T Consensus        97 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          97 ALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988887754433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.1e-15  Score=127.55  Aligned_cols=115  Identities=12%  Similarity=0.058  Sum_probs=104.0

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+..|+++++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.++.++|.+++. +|+++
T Consensus        45 ~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~  122 (259)
T d1xnfa_          45 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDK  122 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhHH
Confidence            46677899999999999999999999999999996666 58999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      +|+.+|+++++.+|++......++..+...+..+...
T Consensus       123 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_         123 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999999999999888888888877654444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.3e-16  Score=130.67  Aligned_cols=99  Identities=13%  Similarity=0.084  Sum_probs=89.1

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|+|++|+.+|+++|+++|+++.+|+++|.++. ..|++++|+++|++||+++|++..+|+++|.++.. +|+++
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~   89 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYD   89 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHH
Confidence            44566789999999999999999999999999997766 58999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 024243          207 RAESYFDQAVKAAPDDCYVLA  227 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~  227 (270)
                      +|+.+|++|++++|++...+.
T Consensus        90 ~A~~~~~~al~l~p~~~~~~~  110 (201)
T d2c2la1          90 EAIANLQRAYSLAKEQRLNFG  110 (201)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhCcccHHHHH
Confidence            999999999999886544333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.5e-15  Score=129.02  Aligned_cols=128  Identities=18%  Similarity=0.187  Sum_probs=113.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+.+|+++++++|+++.++..+|.++. ..|++++|++.|++++...|.+..++..++.++.. .|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  322 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIE  322 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CCCHH
Confidence            34556789999999999999999999999999997776 47999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF  256 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f  256 (270)
                      +|+.+|+++++++|+++.+++.+|.++...|++++|....+..-.++|.+
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999987655533345543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=3.1e-15  Score=120.13  Aligned_cols=116  Identities=17%  Similarity=0.138  Sum_probs=99.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---------ARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---------~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l  197 (270)
                      .-|++.+.|++|+..|+++++++|+++.+++++|.++..         ..+++++|++.|++||+++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            345666789999999999999999999999999987763         24567899999999999999999999999977


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          198 IWQSH-----------KDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       198 l~~~~-----------g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      +.. +           +++++|+.+|++|++++|++..++..++......+.+.+..
T Consensus        85 y~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          85 YTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHH-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            765 4           34789999999999999999999999999887666555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.3e-15  Score=131.39  Aligned_cols=119  Identities=12%  Similarity=0.083  Sum_probs=107.2

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |.+++.+++|+..|++||+++|++..+|+++|.++....+++++|+++|+++|+++|++..+|.++|.++.. +|++++|
T Consensus        53 ~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~eA  131 (315)
T d2h6fa1          53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQE  131 (315)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTH
T ss_pred             HHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHHHH
Confidence            455678999999999999999999999999997776533469999999999999999999999999977766 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +.+|.++++++|++..+|.++|.++...++++++.+..+.
T Consensus       132 l~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~  171 (315)
T d2h6fa1         132 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  171 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999998865433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=118.19  Aligned_cols=114  Identities=17%  Similarity=0.082  Sum_probs=100.0

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNP---------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS  192 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~---------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~  192 (270)
                      .|..++++++|+..|+++|+..|...               .++.++|.++. .+|++++|+.+|++||+++|+++.+++
T Consensus        22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~  100 (170)
T d1p5qa1          22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLS  100 (170)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhH
Confidence            34556799999999999999988653               55678896666 589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      .+|.+++. +|++++|+.+|+++++++|+++.+...++.+.....+..+.+
T Consensus       101 ~~g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         101 RRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887 999999999999999999999999999999988777655544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.1e-15  Score=116.66  Aligned_cols=104  Identities=11%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHH
Q 024243          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE--ARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       132 ~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~--~~Gd~~eA~e~~ekAIeldP~n--~~al~~lA~ll~~~~g~~e~  207 (270)
                      .+++++|++.|+++++++|+++.++++||.++..  ..+++.+|+++|+++++.+|++  .++|+++|.+++. +|++++
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~~~~   90 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-HhhhHH
Confidence            4689999999999999999999999999987763  1357788999999999999866  4589999977777 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      |+.+|+++|+++|++..++..+..+..+.
T Consensus        91 A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          91 ALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988877654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.6e-15  Score=126.90  Aligned_cols=110  Identities=14%  Similarity=0.171  Sum_probs=102.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..|++++...|.+..++..++.++. ..|++++|+++|+++|+++|+++.++..+|.++.. +|+++
T Consensus       279 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~  356 (388)
T d1w3ba_         279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQ  356 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34556689999999999999999999999999996666 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDADE  238 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge  238 (270)
                      +|+.+|++|++++|+++.++.++|.+|.++|+
T Consensus       357 ~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999885

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.2e-14  Score=117.04  Aligned_cols=114  Identities=14%  Similarity=0.091  Sum_probs=100.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..+...+++++|+..|++   +.|.++.+|+++|.+++ ..|++++|+++|++||++||+++.+|.++|.++++ +|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHH
Confidence            344567899999999986   46778999999997776 58999999999999999999999999999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCcHHHHhc
Q 024243          207 RAESYFDQAVKAAPDD----------------CYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~----------------~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+..|++|+...+.+                +.+++++|.++..+|+++++.+.
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~  142 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ  142 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999876643                57889999999999999998864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=3.4e-14  Score=115.48  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=99.9

Q ss_pred             cccCCChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQA----------------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS  192 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALel----------------dP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~  192 (270)
                      +...+++.+|+..|+++|+.                +|.+..++.++|.++. ..|++++|+..|++||+++|+++.+|+
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~  115 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALY  115 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHH
Confidence            34567999999999999864                5677788899996666 589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      .+|.++.. +|++++|+..|+++++++|++..+...+..+........+++
T Consensus       116 ~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         116 RRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99977777 999999999999999999999999999999988776666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.6e-13  Score=115.71  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=103.9

Q ss_pred             cccCCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 024243          129 DPNNHGNNSTDLYYQKMIQAD----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeld----P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~  204 (270)
                      ++.+.+.+.++..+++++...    |..+.+++.+|.++. ..|++++|++.|++||+++|+++.+|..+|.++.. +|+
T Consensus         9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~   86 (259)
T d1xnfa_           9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGN   86 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTC
T ss_pred             ccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHH
Confidence            445567788999999998764    345679999996666 58999999999999999999999999999977766 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          205 ASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       205 ~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +++|+.+|+++++++|++..++.++|.+++.+|+++++....+.
T Consensus        87 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999865443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=120.62  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n--~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      +.+.+|+..|+++++++|++  +.++..+|.++. ..|++++|+.+|++++..+|+++.+|..+|.++.. +|++++|+.
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~  227 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhcccc-cccchhHHH
Confidence            46677777777777777763  566677775555 46778888888888887788777777777766665 777888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          211 YFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       211 ~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +|+++++++|+++.+++.+|.++..+|++++|...
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            88888877777777777788888777777777643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=1.4e-13  Score=110.64  Aligned_cols=106  Identities=13%  Similarity=0.043  Sum_probs=93.4

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNP----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSM  193 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~----------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~  193 (270)
                      ...++|.+|+..|+++++..+...                .++.++|.+++ ..|++++|+++|++||+++|++..+|+.
T Consensus        28 f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~  106 (153)
T d2fbna1          28 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYK  106 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHH
Confidence            346799999999999998765432                36678996766 5899999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          194 YGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       194 lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      +|.+++. +|++++|+.+|+++++++|++..+...+..+..++.
T Consensus       107 ~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         107 LGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9988887 999999999999999999999999999988876553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.48  E-value=9e-14  Score=106.31  Aligned_cols=85  Identities=13%  Similarity=-0.000  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      .+|..+. ..|++++|+.+|+++|+++|+++.+|..+|.++.. .+++++|+.+|+++++++|++..++..+|.+|..+|
T Consensus        21 ~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          21 EEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            4443333 24555555555555555555555555555544443 555555555555555555555555555555555555


Q ss_pred             CcHHHHh
Q 024243          238 EDEEDEQ  244 (270)
Q Consensus       238 e~eea~~  244 (270)
                      +.++|.+
T Consensus        99 ~~~~A~~  105 (112)
T d1hxia_          99 NANAALA  105 (112)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            5555544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.5e-13  Score=115.46  Aligned_cols=108  Identities=11%  Similarity=-0.024  Sum_probs=92.6

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...|++++|+.+|+++++.+|+++.+|..+|.++. ..|++++|+++|+++++++|+++.++..+|.++.. +|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~  257 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHR  257 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHH
Confidence            45567799999999999999999999999999997766 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024243          207 RAESYFDQAVKAAPDDCYVLASHAHFLWDA  236 (270)
Q Consensus       207 ~A~~~~ekAL~~~P~~~~~~~~la~il~~~  236 (270)
                      +|+.+|++|++++|++..++...+.++...
T Consensus       258 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~  287 (323)
T d1fcha_         258 EAVEHFLEALNMQRKSRGPRGEGGAMSENI  287 (323)
T ss_dssp             HHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred             HHHHHHHHHHHhCCcChhhhhhhHHHHHHH
Confidence            999999999999999998887776655444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-13  Score=123.40  Aligned_cols=105  Identities=13%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~  212 (270)
                      +++++|+.+|+++++++|++..+|+.+|.++. ..|++++|+++|++||+++|++..+|.++|.++.. .+++++|+.+|
T Consensus        92 ~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~~Al~~~  169 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYV  169 (315)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            47999999999999999999999999996665 58999999999999999999999999999987777 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024243          213 DQAVKAAPDDCYVLASHAHFLWDADED  239 (270)
Q Consensus       213 ekAL~~~P~~~~~~~~la~il~~~Ge~  239 (270)
                      +++++++|++..+|.+++.++...+..
T Consensus       170 ~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         170 DQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            999999999999999999999988874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.45  E-value=3.3e-13  Score=109.84  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=98.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n---------------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al  191 (270)
                      ..+...|+|.+|+.+|++++...|..               ..++.++|.+++ ..+++++|+++|+++|+++|++..++
T Consensus        23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~  101 (168)
T d1kt1a1          23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGL  101 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHH
Confidence            34456789999999999999865443               245678896666 58999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       192 ~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      +.+|.++.. +|++++|+..|+++++++|++..+...++.+.....+..+.+
T Consensus       102 ~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1         102 YRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            999987777 999999999999999999999999999999988777655544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.6e-13  Score=109.04  Aligned_cols=94  Identities=11%  Similarity=-0.035  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      ++..+...|..++. .|+|++|+++|++||+++|+++.+|.++|.++.. .|++++|+.+|++|++++|++..+++++|.
T Consensus         3 ~a~~l~~~Gn~~~~-~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            35566788988885 8999999999999999999999999999977776 999999999999999999999999999999


Q ss_pred             HHHHcCCcHHHHhccC
Q 024243          232 FLWDADEDEEDEQVGE  247 (270)
Q Consensus       232 il~~~Ge~eea~~~~e  247 (270)
                      +|..+|++++|....+
T Consensus        81 ~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          81 CQLEMESYDEAIANLQ   96 (201)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHH
Confidence            9999999999986543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.1e-13  Score=104.78  Aligned_cols=102  Identities=18%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-------VLSMYGDLIW  199 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~-------al~~lA~ll~  199 (270)
                      ..|...++|++|+.+|+++|+++|+++.++.++|.++. ..|+|++|++.|++||+++|++..       ++..+|.++.
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            34556689999999999999999999999999997777 589999999999999999998765       4555665555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024243          200 QSHKDASRAESYFDQAVKAAPDDCYVLASHAH  231 (270)
Q Consensus       200 ~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~  231 (270)
                      . ++++++|+.+|++++..++ ++.++..+..
T Consensus        91 ~-~~~~~~A~~~~~kal~~~~-~~~~~~~l~~  120 (128)
T d1elra_          91 K-EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ  120 (128)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence            5 8999999999999999987 4666555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.9e-13  Score=102.27  Aligned_cols=91  Identities=20%  Similarity=0.075  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      +...|..++. .|++++|+.+|+++|+++|+++.+|.++|.++.. +|++++|+.+|+++++++|+++.+++++|.++..
T Consensus         6 l~~~g~~~~~-~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           6 LKEKGNKALS-VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            4567877774 7999999999999999999999999999977777 9999999999999999999999999999999999


Q ss_pred             cCCcHHHHhccCC
Q 024243          236 ADEDEEDEQVGEE  248 (270)
Q Consensus       236 ~Ge~eea~~~~e~  248 (270)
                      +|++++|....+.
T Consensus        84 ~~~~~~A~~~~~~   96 (117)
T d1elwa_          84 LNRFEEAKRTYEE   96 (117)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHH
Confidence            9999999976555

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.6e-13  Score=106.48  Aligned_cols=91  Identities=12%  Similarity=-0.054  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       156 l~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      +...|+.++. .|+|++|+++|++||+++|++..+|.++|.+++. +|++++|+..|+++++++|++..++..+|.++..
T Consensus        13 l~~~gn~~~~-~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            3456777774 8999999999999999999999999999977777 9999999999999999999999999999999999


Q ss_pred             cCCcHHHHhccCC
Q 024243          236 ADEDEEDEQVGEE  248 (270)
Q Consensus       236 ~Ge~eea~~~~e~  248 (270)
                      +|+++++....+.
T Consensus        91 ~g~~~eA~~~~~~  103 (159)
T d1a17a_          91 LGKFRAALRDYET  103 (159)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999876554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=9.1e-13  Score=100.54  Aligned_cols=88  Identities=11%  Similarity=-0.036  Sum_probs=80.8

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..+.+.|++++|+..|+++++++|+++.+|..+|.++. ..+++++|+.+|++||+++|++..+|..+|.++.. +|+++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHH
Confidence            34566799999999999999999999999999997665 58999999999999999999999999999966666 99999


Q ss_pred             HHHHHHHHHH
Q 024243          207 RAESYFDQAV  216 (270)
Q Consensus       207 ~A~~~~ekAL  216 (270)
                      +|+++|++.|
T Consensus       102 ~A~~~l~~~l  111 (112)
T d1hxia_         102 AALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999986

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.7e-11  Score=101.95  Aligned_cols=102  Identities=10%  Similarity=-0.003  Sum_probs=86.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC----------------HHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND----------------GNV  190 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n----------------~~a  190 (270)
                      ..|...|++++|+..|++++++||+++.+|+++|.++. .+|++++|++.|++||+..+.+                .++
T Consensus        44 ~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~  122 (192)
T d1hh8a_          44 CMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV  122 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred             HHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHH
Confidence            45667899999999999999999999999999997766 5899999999999999987654                478


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHA  230 (270)
Q Consensus       191 l~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la  230 (270)
                      ++++|.++.. ++++++|++.|++|+++.|+........+
T Consensus       123 ~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~~~~~~~~A  161 (192)
T d1hh8a_         123 LYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKA  161 (192)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            8999966666 99999999999999999997544444333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.9e-11  Score=88.90  Aligned_cols=82  Identities=12%  Similarity=0.092  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYV  225 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~  225 (270)
                      ++-.+.+|..++. .|+|.+|++.|++|+++.|.+       ..++.++|.++++ .|++++|+.+|+++|+++|+++.+
T Consensus         5 addc~~lG~~~~~-~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHH
Confidence            4556789988885 899999999999999997654       6789999988887 999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 024243          226 LASHAHFLWDA  236 (270)
Q Consensus       226 ~~~la~il~~~  236 (270)
                      +.+++.+...+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998766543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.6e-11  Score=92.81  Aligned_cols=90  Identities=9%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCY-------VL  226 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~-------~~  226 (270)
                      ..+-++|..++. .|+|++|+++|++||+++|++..++.++|.++.. +|++++|+.++++|++++|++..       ++
T Consensus         5 ~~~k~~G~~~~~-~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           5 LKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345688988885 7999999999999999999999999999988877 99999999999999999997754       56


Q ss_pred             HHHHHHHHHcCCcHHHHhc
Q 024243          227 ASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       227 ~~la~il~~~Ge~eea~~~  245 (270)
                      ..+|.++..+++++++...
T Consensus        83 ~~lg~~~~~~~~~~~A~~~  101 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHF  101 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHH
Confidence            6677777888888888754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=2.7e-11  Score=106.76  Aligned_cols=115  Identities=8%  Similarity=0.040  Sum_probs=101.3

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~G--d~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      ...+.+++|+.+|+++++.+|++..+|+.+|..+.. .+  ++++|+..++++++++|++..++..+...++...+++++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            345678999999999999999999999999966653 44  589999999999999999999987665566665899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          208 AESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       208 A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |+.+++++++++|++..++..++.++..+|+++++...
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999999999999999999999998876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.8e-10  Score=92.44  Aligned_cols=94  Identities=7%  Similarity=-0.059  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024243          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---------------GNVLSMYGDLIWQSHKDASRAESYFDQAVK  217 (270)
Q Consensus       153 ~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n---------------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~  217 (270)
                      +..+...|..++. .|+|++|+++|++||++.|..               ..++.++|.+++. +|++++|+.+++++++
T Consensus        13 a~~l~~~G~~~~~-~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          13 STIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-hhhcccccchhhhhhh
Confidence            4555678877885 799999999999999998854               2456778866666 9999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          218 AAPDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       218 ~~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      ++|++..+++.+|.+++.+|++++|....+.
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  121 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQK  121 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999976555

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.7e-11  Score=91.69  Aligned_cols=99  Identities=11%  Similarity=-0.033  Sum_probs=80.5

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 024243          158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ--SHKDASRAESYFDQAVKAAPDD--CYVLASHAHFL  233 (270)
Q Consensus       158 ~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~--~~g~~e~A~~~~ekAL~~~P~~--~~~~~~la~il  233 (270)
                      ++++.+.. .+++++|++.|++||+++|++++++++||+++..  ..+++++|+.+|+++++.+|++  ..+++++|.+|
T Consensus         4 ~l~n~~~~-~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVS-VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45555664 6999999999999999999999999999987764  1345668999999999998865  45899999999


Q ss_pred             HHcCCcHHHHhccCCCCCCCCCCC
Q 024243          234 WDADEDEEDEQVGEEPAPPSYNFQ  257 (270)
Q Consensus       234 ~~~Ge~eea~~~~e~~~~~~p~f~  257 (270)
                      +.+|++++|....+..-.++|.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            999999999977655333455543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.05  E-value=8.2e-11  Score=94.02  Aligned_cols=92  Identities=9%  Similarity=-0.011  Sum_probs=76.9

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC----------
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNP------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPN----------  186 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~----------  186 (270)
                      +...|+|++|+..|+++|+++|+.+            .++.++|.++. .+|++++|++.|+++|++.|.          
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccc
Confidence            3445899999999999999988753            67889997777 589999999999999987642          


Q ss_pred             -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          187 -DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       187 -n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                       ...+++++|.++.. +|++++|+.+|++|+++.|+.
T Consensus        98 ~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          98 LWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHHh
Confidence             23478899977666 999999999999999997643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=3.4e-09  Score=92.97  Aligned_cols=121  Identities=9%  Similarity=0.017  Sum_probs=99.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 024243          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-  203 (270)
Q Consensus       134 d~~eA~~~y~kALeldP~n~~al~~lA~~l~~~---------~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g-  203 (270)
                      ..++|+.+++++++++|++..+|+..+.++...         .+++.+|+.+|+++++.+|++..+|..++.++.. .+ 
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~  122 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE  122 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSS
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hcc
Confidence            458999999999999999999998877554421         2448999999999999999999999999977665 54 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCcHHHHhccCCCCCCCCC
Q 024243          204 -DASRAESYFDQAVKAAPDDCYVLA-SHAHFLWDADEDEEDEQVGEEPAPPSYN  255 (270)
Q Consensus       204 -~~e~A~~~~ekAL~~~P~~~~~~~-~la~il~~~Ge~eea~~~~e~~~~~~p~  255 (270)
                       ++++|+.+++++++.+|++..++. ..+.++...++.+++....+..-..+|.
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence             589999999999999999988864 6678888889999888765554444554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=4.2e-10  Score=97.93  Aligned_cols=131  Identities=11%  Similarity=0.018  Sum_probs=75.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN------DGNVLSMY  194 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~------n~~al~~l  194 (270)
                      .+|...+++++|+.+|++++++.+.+      ..++..+|..+....|++++|+++|++|+++.+.      ...++.++
T Consensus        85 ~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l  164 (290)
T d1qqea_          85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC  164 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence            45566667777777777776665444      4555566644443346777777777777666432      23446666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCCCC
Q 024243          195 GDLIWQSHKDASRAESYFDQAVKAAPDDC-------YVLASHAHFLWDADEDEEDEQVGEEPAPPSYNFQQ  258 (270)
Q Consensus       195 A~ll~~~~g~~e~A~~~~ekAL~~~P~~~-------~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f~~  258 (270)
                      |.++.. +|+|++|+.+|++++...+.+.       .++...+.++...++.+.+....+...-.+|.|..
T Consensus       165 a~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         165 ADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHH-cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence            655555 7777777777777777666543       34455666666667766666555554444555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=3.9e-10  Score=89.61  Aligned_cols=74  Identities=11%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             HhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          165 EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---------SHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       165 ~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---------~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      ++.+.|++|++.|++||+++|+++++++++|.++..         ..+++++|+.+|++|++++|++..+++++|.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            346789999999999999999999999999988764         24567899999999999999999999999999988


Q ss_pred             cCC
Q 024243          236 ADE  238 (270)
Q Consensus       236 ~Ge  238 (270)
                      +|+
T Consensus        88 ~g~   90 (145)
T d1zu2a1          88 FAF   90 (145)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=5e-10  Score=97.40  Aligned_cols=121  Identities=12%  Similarity=0.020  Sum_probs=100.4

Q ss_pred             cccccccCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 024243          125 WGSWDPNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLS  192 (270)
Q Consensus       125 gg~~Ye~~gd~~eA~~~y~kALeld------P~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~  192 (270)
                      .+..|...+++++|+.+|.+++++.      +....++.++|.++. ..|++++|+++|++++++.+++      ..++.
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            4567788899999999999999973      333577889997766 4899999999999999998765      66788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          193 MYGDLIWQSHKDASRAESYFDQAVKAAPD------DCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       193 ~lA~ll~~~~g~~e~A~~~~ekAL~~~P~------~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .+|.++....+++++|+.+|++|+++.+.      ...++.++|.++..+|++++|....
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~  181 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY  181 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence            88877766579999999999999987543      2556889999999999999998643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.9e-10  Score=82.32  Aligned_cols=69  Identities=13%  Similarity=0.115  Sum_probs=60.5

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n-------~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~l  197 (270)
                      .+.++|++++|+.+|++|+++.|.+       ..++.++|.+++ ..|++++|+++|++||+++|+++.++.+++.+
T Consensus        14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (95)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            3456789999999999999997654       678999997777 48999999999999999999999999999843

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.97  E-value=1.2e-09  Score=87.06  Aligned_cols=92  Identities=10%  Similarity=-0.077  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024243          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (270)
Q Consensus       155 al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----------------~al~~lA~ll~~~~g~~e~A~~~~ekAL~~  218 (270)
                      .+...|..++. .|+|.+|+..|++||.+.+...                .++.++|.+++. ++++++|+.++++||++
T Consensus        19 ~~~~~G~~~f~-~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          19 DIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-hcccchhhhhhhccccc
Confidence            34567777774 7999999999999999876432                367789977776 99999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHhccCC
Q 024243          219 APDDCYVLASHAHFLWDADEDEEDEQVGEE  248 (270)
Q Consensus       219 ~P~~~~~~~~la~il~~~Ge~eea~~~~e~  248 (270)
                      +|++..+++.+|.++..+|++++|....+.
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~  126 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYK  126 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999976555

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.9e-10  Score=104.91  Aligned_cols=105  Identities=12%  Similarity=0.026  Sum_probs=82.6

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024243          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (270)
Q Consensus       129 Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A  208 (270)
                      |...+++++|+..|+++++.+|.  .++.++|..+. .++++++|+.+|++|++++|+++.+++++|.++.. .|++.+|
T Consensus       130 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A  205 (497)
T d1ya0a1         130 SNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTT  205 (497)
T ss_dssp             -------------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            34567889999999999998875  57778996655 58999999999999999999999999999966666 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024243          209 ESYFDQAVKAAPDDCYVLASHAHFLWDAD  237 (270)
Q Consensus       209 ~~~~ekAL~~~P~~~~~~~~la~il~~~G  237 (270)
                      +.+|.||+.++|+++.++.+++.++....
T Consensus       206 ~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         206 IFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999886544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.8e-09  Score=93.18  Aligned_cols=118  Identities=14%  Similarity=0.196  Sum_probs=103.3

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~-~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~  205 (270)
                      .+++.++++++|...|+++++..|.+. .+|..++.++. ..+++++|.++|++|++..|.+...+..+|.+.+...++.
T Consensus       107 ~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~  185 (308)
T d2onda1         107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCH
Confidence            345667899999999999999999875 47889997766 4799999999999999999999999999997666657899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          206 SRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       206 e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      +.|..+|+++++.+|+++.++..++.++...|+.+.+...
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~  225 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999999999999999999999999999999999888754

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=1.2e-09  Score=87.83  Aligned_cols=79  Identities=13%  Similarity=0.022  Sum_probs=68.5

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e  206 (270)
                      ..|...+++++|+..|+++|+++|+++.+|+.+|.++. ..|++++|++.|++|++++|+|..+...++.+... .....
T Consensus        85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~-l~~~~  162 (169)
T d1ihga1          85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK-IKAQK  162 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHH
Confidence            45667789999999999999999999999999997777 48999999999999999999999999999966544 44443


Q ss_pred             H
Q 024243          207 R  207 (270)
Q Consensus       207 ~  207 (270)
                      +
T Consensus       163 ~  163 (169)
T d1ihga1         163 D  163 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.93  E-value=1.3e-10  Score=101.97  Aligned_cols=114  Identities=14%  Similarity=0.093  Sum_probs=95.1

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024243          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (270)
Q Consensus       131 ~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~  210 (270)
                      ..|++++|+..|+++++.+|+++.++..++.+++ ..|++++|++.|+++++++|++..++..++.++.. .+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-AQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccccHHHHH
Confidence            3579999999999999999999999999997777 48999999999999999999999999999977655 566666655


Q ss_pred             HHHHHH-HhCCCCHHHHHHHHHHHHHcCCcHHHHhcc
Q 024243          211 YFDQAV-KAAPDDCYVLASHAHFLWDADEDEEDEQVG  246 (270)
Q Consensus       211 ~~ekAL-~~~P~~~~~~~~la~il~~~Ge~eea~~~~  246 (270)
                      .+.+.. ..+|++...+...+.++...|+.+++....
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~  122 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA  122 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            544433 335666777888899999999999998643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.91  E-value=2.5e-09  Score=86.29  Aligned_cols=89  Identities=10%  Similarity=-0.024  Sum_probs=73.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA-  205 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~-  205 (270)
                      .+|...+++++|+.+++++++++|++..+++.+|.++. ..|++++|++.|+++++++|++..++..++.+... .+++ 
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-~~~~~  149 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK-AKEHN  149 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHhHH
Confidence            45667889999999999999999999999999997777 48999999999999999999999999999977555 3333 


Q ss_pred             HHHHHHHHHHHH
Q 024243          206 SRAESYFDQAVK  217 (270)
Q Consensus       206 e~A~~~~ekAL~  217 (270)
                      ++....|.+.++
T Consensus       150 e~~kk~~~~~f~  161 (168)
T d1kt1a1         150 ERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            334455444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.3e-10  Score=107.82  Aligned_cols=123  Identities=11%  Similarity=0.019  Sum_probs=75.9

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~  209 (270)
                      +..+.|+.++..|++++.++|++..++.++|..+. ..+++++|+..+++++.++|  ..++.++|.++.. .+++++|+
T Consensus        97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~-~~~~~~A~  172 (497)
T d1ya0a1          97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARY-RNQTSQAE  172 (497)
T ss_dssp             HHHHHHHHHHHHHTC--------------------------------CCHHHHHHH--HHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHH-cccHHHHH
Confidence            33456778888888888899999999999996665 58999999999999999887  4688899977766 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHhccCCCCCCCCCC
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQVGEEPAPPSYNF  256 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~~~e~~~~~~p~f  256 (270)
                      .+|++|++++|+++..+.++|.++...|+..+|...-...-..+|+|
T Consensus       173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999986544423334444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.8e-08  Score=87.90  Aligned_cols=116  Identities=9%  Similarity=0.029  Sum_probs=100.1

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024243          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (270)
Q Consensus       128 ~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~  207 (270)
                      +....++++.|+.+|+++++..|.+...+..+|...+...++.+.|..+|+++++.+|+++.+|..++.+... .|++++
T Consensus       143 ~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~  221 (308)
T d2onda1         143 FARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNN  221 (308)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHH
Confidence            3345678999999999999999999999999996655556899999999999999999999999999987777 999999


Q ss_pred             HHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHh
Q 024243          208 AESYFDQAVKAAPDD----CYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       208 A~~~~ekAL~~~P~~----~~~~~~la~il~~~Ge~eea~~  244 (270)
                      |..+|++|++..|.+    ..++..+..+-...|+.+....
T Consensus       222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~  262 (308)
T d2onda1         222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999987754    4577788888788888776664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=7.9e-08  Score=78.88  Aligned_cols=101  Identities=10%  Similarity=-0.037  Sum_probs=82.4

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNP----------------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~----------------------~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n  187 (270)
                      ...|++++|+..|++|+++.+++.                      .++.+++..+. ..|++++|+.+|+++|+++|.+
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P~~  100 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYR  100 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCcc
Confidence            346799999999999999987663                      46778886666 4899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHH
Q 024243          188 GNVLSMYGDLIWQSHKDASRAESYFDQAV-------KAAPDDCYVLASHAHFL  233 (270)
Q Consensus       188 ~~al~~lA~ll~~~~g~~e~A~~~~ekAL-------~~~P~~~~~~~~la~il  233 (270)
                      ..+|..++.+++. .|++.+|+..|+++.       .+.|. +.....+..++
T Consensus       101 e~~~~~l~~al~~-~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il  151 (179)
T d2ff4a2         101 EPLWTQLITAYYL-SDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL  151 (179)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            9999999988887 999999999999984       45663 44444444444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.72  E-value=2.5e-08  Score=79.11  Aligned_cols=90  Identities=16%  Similarity=-0.003  Sum_probs=73.2

Q ss_pred             HHHHHH--HHHHHHhhCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024243          154 LLLSNY--ARFLKEARGDLLKAEEYCARAILMSPND------------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (270)
Q Consensus       154 ~al~~l--A~~l~~~~Gd~~eA~e~~ekAIeldP~n------------~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~  219 (270)
                      .++..+  |...+ ..|+|++|++.|++||+++|+.            ..+|.++|.+++. +|++++|+..+++++++.
T Consensus         8 ~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           8 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcc
Confidence            344444  54555 3699999999999999999875            3578899977777 999999999999999875


Q ss_pred             CC-----------CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          220 PD-----------DCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       220 P~-----------~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      |+           ...+++++|.+|..+|+++++...
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHH
Confidence            42           244789999999999999999854

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=5.3e-08  Score=82.04  Aligned_cols=114  Identities=13%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 024243          130 PNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLI  198 (270)
Q Consensus       130 e~~gd~~eA~~~y~kALeldP~n~-----~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n------~~al~~lA~ll  198 (270)
                      -..|++++|+.+|+++++..|++.     .++..+|.++. ..|++++|+++|++++++.+..      ..++..++.++
T Consensus        23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            456899999999999999999874     57778896666 5899999999999999987533      34566777666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCcHHHHhc
Q 024243          199 WQSHKDASRAESYFDQAVKAAPD--------DCYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       199 ~~~~g~~e~A~~~~ekAL~~~P~--------~~~~~~~la~il~~~Ge~eea~~~  245 (270)
                      .. .+++.+|...+.+++.+.+.        ....+..++.+++..|+.+.+...
T Consensus       102 ~~-~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~  155 (366)
T d1hz4a_         102 FA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS  155 (366)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence            66 99999999999999976432        235677889999999999888754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=3.6e-07  Score=74.83  Aligned_cols=89  Identities=8%  Similarity=-0.069  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 024243          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------------NVLSMYGDLIWQSHKDASRAESY  211 (270)
Q Consensus       154 ~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~----------------------~al~~lA~ll~~~~g~~e~A~~~  211 (270)
                      ..+...|..+.. .|++++|++.|.+|+.+.+.+.                      .++..++.++.. +|++++|+.+
T Consensus        12 ~~~~~~g~~~~~-~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~   89 (179)
T d2ff4a2          12 VAEKTAGVHAAA-AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHH
Confidence            456677766664 7999999999999999987542                      567888877777 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024243          212 FDQAVKAAPDDCYVLASHAHFLWDADEDEEDEQ  244 (270)
Q Consensus       212 ~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~~  244 (270)
                      ++++++++|.+..++..++.+|...|+..++..
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999999999999999974

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.49  E-value=1.7e-07  Score=81.51  Aligned_cols=77  Identities=25%  Similarity=0.276  Sum_probs=70.8

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Q 024243          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASHAHFLWDADEDEEDE  243 (270)
Q Consensus       166 ~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~~Ge~eea~  243 (270)
                      ..|++++|++.|+++|+.+|+|..++..++.++.. .|++++|+..|+++++++|++..++..++.++...+..+++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            46999999999999999999999999999988887 999999999999999999999999999999988776665554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=4.4e-07  Score=70.69  Aligned_cols=82  Identities=15%  Similarity=-0.033  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024243          153 PLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDCYVLASH  229 (270)
Q Consensus       153 ~~al~~lA~~l~~~--~Gd~~eA~e~~ekAIeldP~n~-~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~~~~~~~l  229 (270)
                      ....++||.+|...  ..+..+|+.+++.+++.+|.+. ++++.+|..++. +|+|++|..+++++|+++|+|..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            67889999777642  2577899999999999999764 899999977777 9999999999999999999999998777


Q ss_pred             HHHHHH
Q 024243          230 AHFLWD  235 (270)
Q Consensus       230 a~il~~  235 (270)
                      ..|--+
T Consensus       114 ~~Ie~~  119 (124)
T d2pqrb1         114 SMVEDK  119 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=9.8e-07  Score=73.97  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=77.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024243          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-----GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (270)
Q Consensus       148 ldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n-----~~al~~lA~ll~~~~g~~e~A~~~~ekAL~~~P~~  222 (270)
                      .++-++.+....|.++. ..|++++|+++|++|++..|++     ..++..+|.+++. .|++++|+.+|++++++.+..
T Consensus         7 ~~~~~ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhh
Confidence            33445666777786666 5899999999999999999976     3578889977777 999999999999999876532


Q ss_pred             ------HHHHHHHHHHHHHcCCcHHHHhc
Q 024243          223 ------CYVLASHAHFLWDADEDEEDEQV  245 (270)
Q Consensus       223 ------~~~~~~la~il~~~Ge~eea~~~  245 (270)
                            ...+..++.++...++...+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  113 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWET  113 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  45678889999999998888753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=1.1e-05  Score=61.73  Aligned_cols=94  Identities=18%  Similarity=0.152  Sum_probs=77.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDASRAE  209 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~~e~A~  209 (270)
                      .|+++|+.+|+++.+..  ++.+.+.++. .  ...++++|+++|++|.+  .+++.+++.+|.++..-   ..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~-~--~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS-N--SQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT-C--TTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc-c--cccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHH
Confidence            49999999999999874  6666777772 2  35899999999999987  47899999999665531   35789999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          210 SYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       210 ~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                      .+|+++.+.  .++.+++.++.+|..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999999885  578999999999877

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=1.4e-05  Score=61.83  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=55.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~-~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA  195 (270)
                      .+.++++..|+++++.+|.+. +.++.+|..++ ..|+|++|.++++++|+++|+|..+....-
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            478999999999999999875 89999997777 589999999999999999999999986655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=0.00015  Score=55.11  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=68.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 024243          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDAS  206 (270)
Q Consensus       133 gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~---~g~~e  206 (270)
                      .+.++|+.+|+++.+.  +++.+.+.+|.++..   +..|+.+|+++|++|.+.  .++.+.+.+|.++..-   ..+++
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            5889999999999875  789999999955542   135799999999999974  6899999999665541   46899


Q ss_pred             HHHHHHHHHHHhCC
Q 024243          207 RAESYFDQAVKAAP  220 (270)
Q Consensus       207 ~A~~~~ekAL~~~P  220 (270)
                      +|+.+|++|.+...
T Consensus       113 ~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         113 QAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999998765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.70  E-value=0.00022  Score=59.14  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=80.4

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024243          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--  201 (270)
Q Consensus       127 ~~Ye~~gd~~eA~~~y~kALeldP~n~~al~~lA~~l~~---~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~~--  201 (270)
                      ..+...+|+++|+.+|+++.+.  ++..+++.||.++..   +..++.+|..+++++..  ..++.+...++.++...  
T Consensus        10 ~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~~~~~~~~~   85 (265)
T d1ouva_          10 AKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNLYYSGQG   85 (265)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhccccccccccc
Confidence            3455678999999999999765  688999999966553   24699999999999887  55888888888655431  


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024243          202 -HKDASRAESYFDQAVKAAPDDCYVLASHAHFLWD  235 (270)
Q Consensus       202 -~g~~e~A~~~~ekAL~~~P~~~~~~~~la~il~~  235 (270)
                       ..+.+.|..+++++.+..+  ......++..+..
T Consensus        86 ~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~  118 (265)
T d1ouva_          86 VSQNTNKALQYYSKACDLKY--AEGCASLGGIYHD  118 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhhhhhhh--hhHHHhhcccccC
Confidence             4688899999999988654  6667777777765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.67  E-value=0.0004  Score=57.41  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024243          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDASRAESYFDQAVKAAPDDCYVLAS  228 (270)
Q Consensus       152 n~~al~~lA~~l~~~~Gd~~eA~e~~ekAIeldP~n~~al~~lA~ll~~---~~g~~e~A~~~~ekAL~~~P~~~~~~~~  228 (270)
                      ||.+++++|..++ ..+|+++|+++|++|.+.  ++..+++.||.+++.   ...++.+|..+++++.+.  .++.++..
T Consensus         1 ~p~~~~~lG~~~~-~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~   75 (265)
T d1ouva_           1 DPKELVGLGAKSY-KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHL   75 (265)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhc
Confidence            6789999996666 479999999999999874  689999999977664   256899999999998874  47888888


Q ss_pred             HHHHHHH
Q 024243          229 HAHFLWD  235 (270)
Q Consensus       229 la~il~~  235 (270)
                      ++.++..
T Consensus        76 l~~~~~~   82 (265)
T d1ouva_          76 LGNLYYS   82 (265)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            8888765

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.50  E-value=1.1  Score=31.34  Aligned_cols=17  Identities=6%  Similarity=0.190  Sum_probs=14.2

Q ss_pred             CChHHHHHHHHHHHHhC
Q 024243          133 HGNNSTDLYYQKMIQAD  149 (270)
Q Consensus       133 gd~~eA~~~y~kALeld  149 (270)
                      .+...|+.++++|++.|
T Consensus        10 ~~~~~A~~l~~~Av~~D   26 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELD   26 (93)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            47889999999998874