Citrus Sinensis ID: 024250

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK
cHHcHHHccccEEEEcccEEEEEccccccccEEEEccccccccHHHHHHHHHHcccccEEEccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccHHccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHcccccEEEEEEccccHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
ccEEccHccccEEEEccccEEccccccccccEEEEccccccccHHHHHHHHHHHccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccEEcccHcHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHHHHHHccHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
mveyfgeqlsgfaftangwvqsygsrcvkppiiygdvsrpkaMTVFWSSLAQSmtarpmkgmltgpvtilnwsfvrndqprheTCYQIALAIKDEVEDLEKAGINVIQIDEAAlreglplrksehafYLDWAVHSfritncgvqdttQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVkygagigpgvydihspripstEEIADRINKMLAVLETNIlwvnpdcglktrkytevkPALSNMVAAAKLLRTQLASAK
MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYgagigpgvydihsPRIPSTEEIADRINKMLAVLETNIlwvnpdcglktRKYTEVKPALSNMVAAAKLLRTQLASAK
MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK
***YFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLL********
MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLL*TQL****
MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK
*VEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS**
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MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
O50008765 5-methyltetrahydropteroyl yes no 1.0 0.352 0.944 1e-157
Q42662764 5-methyltetrahydropteroyl N/A no 1.0 0.353 0.962 1e-156
Q42699765 5-methyltetrahydropteroyl N/A no 1.0 0.352 0.937 1e-153
P93263765 5-methyltetrahydropteroyl N/A no 1.0 0.352 0.933 1e-153
Q39AN3764 5-methyltetrahydropteroyl yes no 0.981 0.346 0.710 1e-110
B1K5S8764 5-methyltetrahydropteroyl yes no 0.981 0.346 0.706 1e-109
A0B2Z3764 5-methyltetrahydropteroyl yes no 0.981 0.346 0.706 1e-109
Q1BQX8764 5-methyltetrahydropteroyl yes no 0.981 0.346 0.706 1e-109
B4EJ37764 5-methyltetrahydropteroyl yes no 0.981 0.346 0.706 1e-109
B1Z0R8764 5-methyltetrahydropteroyl yes no 0.981 0.346 0.703 1e-109
>sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1 Back     alignment and function desciption
 Score =  553 bits (1426), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/270 (94%), Positives = 265/270 (98%)

Query: 1   MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
           MVEYFGEQLSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKAMTVFWS++AQSMT+RPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEHAFYLDWAVHSFRITNCGVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLASAK 270
           KTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct: 736 KTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2 Back     alignment and function description
>sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1 Back     alignment and function description
>sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1 Back     alignment and function description
>sp|Q39AN3|METE_BURS3 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia sp. (strain 383) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B1K5S8|METE_BURCC 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|A0B2Z3|METE_BURCH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|Q1BQX8|METE_BURCA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B4EJ37|METE_BURCJ 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B1Z0R8|METE_BURA4 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
255549601 815 5-methyltetrahydropteroyltriglutamate--h 1.0 0.331 0.966 1e-158
296085909 669 unnamed protein product [Vitis vinifera] 1.0 0.403 0.970 1e-157
225439223 765 PREDICTED: 5-methyltetrahydropteroyltrig 1.0 0.352 0.970 1e-157
147821107 734 hypothetical protein VITISV_018473 [Viti 1.0 0.367 0.966 1e-156
296084004 804 unnamed protein product [Vitis vinifera] 1.0 0.335 0.962 1e-156
224146039 765 vitamin-b12 independent methionine synth 1.0 0.352 0.962 1e-156
118483919 554 unknown [Populus trichocarpa] 1.0 0.487 0.955 1e-155
47600741 765 cobalamin-independent methionine synthas 1.0 0.352 0.944 1e-155
255569484 765 5-methyltetrahydropteroyltriglutamate--h 1.0 0.352 0.966 1e-155
225436073 765 PREDICTED: 5-methyltetrahydropteroyltrig 1.0 0.352 0.962 1e-155
>gi|255549601|ref|XP_002515852.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223545007|gb|EEF46521.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  561 bits (1446), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/270 (96%), Positives = 268/270 (99%)

Query: 1   MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
           MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSS+AQSMT+RPMK
Sbjct: 546 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTSRPMK 605

Query: 61  GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGI VIQIDEAALREGLPL
Sbjct: 606 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 665

Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEHAFYLDWAVHSFRITNCGV+DTTQIHTHMCYSNFNDIIHSII+MDADVITIENSRS
Sbjct: 666 RKSEHAFYLDWAVHSFRITNCGVEDTTQIHTHMCYSNFNDIIHSIINMDADVITIENSRS 725

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE+NILWVNPDCGL
Sbjct: 726 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 785

Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLASAK 270
           KTRKY+EVKPALSNMVAA K+LRTQLASAK
Sbjct: 786 KTRKYSEVKPALSNMVAATKILRTQLASAK 815

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085909|emb|CBI31233.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439223|ref|XP_002276438.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147821107|emb|CAN73135.1| hypothetical protein VITISV_018473 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084004|emb|CBI24392.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146039|ref|XP_002325856.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222862731|gb|EEF00238.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118483919|gb|ABK93849.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|47600741|emb|CAE55863.1| cobalamin-independent methionine synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255569484|ref|XP_002525709.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223535009|gb|EEF36692.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225436073|ref|XP_002276908.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
TAIR|locus:2170318765 ATMS1 "methionine synthesis 1" 1.0 0.352 0.944 9.2e-139
TAIR|locus:2079434765 MS2 "methionine synthase 2" [A 1.0 0.352 0.937 7.4e-137
TAIR|locus:2147147812 MS3 "methionine synthase 3" [A 0.985 0.327 0.902 3.1e-131
DICTYBASE|DDB_G0279211825 DDB_G0279211 "5-methyltetrahyd 0.970 0.317 0.661 5e-92
TIGR_CMR|CBU_2048775 CBU_2048 "5-methyltetrahydropt 0.996 0.347 0.629 5.3e-88
TIGR_CMR|SO_0818760 SO_0818 "5-methyltetrahydropte 0.981 0.348 0.646 8.6e-88
UNIPROTKB|P65340759 metE "5-methyltetrahydropteroy 0.970 0.345 0.612 3.8e-85
UNIPROTKB|G4ML75766 MGG_06712 "5-methyltetrahydrop 0.985 0.347 0.600 6.2e-85
ASPGD|ASPL0000077429774 metH [Emericella nidulans (tax 0.985 0.343 0.600 3.4e-84
TIGR_CMR|CJE_1335754 CJE_1335 "5-methyltetrahydropt 0.981 0.351 0.606 7.2e-84
TAIR|locus:2170318 ATMS1 "methionine synthesis 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
 Identities = 255/270 (94%), Positives = 265/270 (98%)

Query:     1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
             MVEYFGEQLSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKAMTVFWS++AQSMT+RPMK
Sbjct:   496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 555

Query:    61 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
             GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPL
Sbjct:   556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query:   121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
             RKSEHAFYLDWAVHSFRITNCGVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRS
Sbjct:   616 RKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRS 675

Query:   181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
             DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NKMLAVLE NILWVNPDCGL
Sbjct:   676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL 735

Query:   241 KTRKYTEVKPALSNMVAAAKLLRTQLASAK 270
             KTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct:   736 KTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
GO:0003871 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005829 "cytosol" evidence=ISS;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0009086 "methionine biosynthetic process" evidence=IEA;ISS
GO:0008705 "methionine synthase activity" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0005777 "peroxisome" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2079434 MS2 "methionine synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147147 MS3 "methionine synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279211 DDB_G0279211 "5-methyltetrahydropteroyltriglutamate-homocysteine-S-methyltransfe rase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_2048 CBU_2048 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0818 SO_0818 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P65340 metE "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|G4ML75 MGG_06712 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000077429 metH [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1335 CJE_1335 "5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B4EJ37METE_BURCJ2, ., 1, ., 1, ., 1, 40.70670.98140.3468yesno
Q1BQX8METE_BURCA2, ., 1, ., 1, ., 1, 40.70670.98140.3468yesno
O50008METE_ARATH2, ., 1, ., 1, ., 1, 40.94441.00.3529yesno
Q39AN3METE_BURS32, ., 1, ., 1, ., 1, 40.71050.98140.3468yesno
Q0B6M7METE_BURCM2, ., 1, ., 1, ., 1, 40.70300.98140.3468yesno
A0B2Z3METE_BURCH2, ., 1, ., 1, ., 1, 40.70670.98140.3468yesno
Q42699METE_CATRO2, ., 1, ., 1, ., 1, 40.93701.00.3529N/Ano
A5FJR8METE_FLAJ12, ., 1, ., 1, ., 1, 40.70340.97030.3385yesno
Q42662METE_SOLSC2, ., 1, ., 1, ., 1, 40.96291.00.3534N/Ano
P93263METE_MESCR2, ., 1, ., 1, ., 1, 40.93331.00.3529N/Ano
B1Z0R8METE_BURA42, ., 1, ., 1, ., 1, 40.70300.98140.3468yesno
B1K5S8METE_BURCC2, ., 1, ., 1, ., 1, 40.70670.98140.3468yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.1.1.140.824
3rd Layer2.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003836001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (765 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000669001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (403 aa)
•  • •• 0.978
GSVIVG00021002001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (500 aa)
•  • •• 0.959
METK2
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
•  • •• 0.950
METK5
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
•  • •• 0.950
METK3
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (389 aa)
•  • •• 0.950
METK4
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
•  • •• 0.950
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
•  • •• 0.950
GSVIVG00015916001
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (444 aa)
   • •• 0.941
GSVIVG00031656001
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (445 aa)
   • •• 0.941
GSVIVG00000520001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (438 aa)
•    •• 0.936

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
PLN02475766 PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl 0.0
PRK05222758 PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl 0.0
TIGR01371750 TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero 0.0
pfam01717324 pfam01717, Meth_synt_2, Cobalamin-independent synt 1e-156
COG0620330 COG0620, MetE, Methionine synthase II (cobalamin-i 1e-129
cd03311332 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i 1e-117
PRK04326330 PRK04326, PRK04326, methionine synthase; Provision 3e-58
cd03310321 cd03310, CIMS_like, CIMS - Cobalamine-independent 2e-26
cd00465306 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot 3e-26
PRK00957305 PRK00957, PRK00957, methionine synthase; Provision 1e-23
PRK01207343 PRK01207, PRK01207, methionine synthase; Provision 5e-22
PRK09121339 PRK09121, PRK09121, 5-methyltetrahydropteroyltrigl 1e-13
>gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information 
 Score =  635 bits (1640), Expect = 0.0
 Identities = 263/270 (97%), Positives = 265/270 (98%)

Query: 1   MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
           MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSS+AQSMT RPMK
Sbjct: 497 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSVAQSMTKRPMK 556

Query: 61  GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGI VIQIDEAALREGLPL
Sbjct: 557 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 616

Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS
Sbjct: 617 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 676

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE+NILWVNPDCGL
Sbjct: 677 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 736

Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLASAK 270
           KTRKY EVKPAL NMVAAAKLLR QLASAK
Sbjct: 737 KTRKYPEVKPALKNMVAAAKLLRAQLASAK 766

Length = 766
>gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic domain Back     alignment and domain information
>gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|100814 PRK01207, PRK01207, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|181659 PRK09121, PRK09121, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
PRK01207343 methionine synthase; Provisional 100.0
PRK05222758 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PLN02475766 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK09121339 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
COG0620330 MetE Methionine synthase II (cobalamin-independent 100.0
TIGR01371750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 100.0
PRK08575326 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK04326330 methionine synthase; Provisional 100.0
PF01717324 Meth_synt_2: Cobalamin-independent synthase, Catal 100.0
PRK06520368 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
KOG2263765 consensus Methionine synthase II (cobalamin-indepe 100.0
PRK06233372 hypothetical protein; Provisional 100.0
cd03312360 CIMS_N_terminal_like CIMS - Cobalamine-independent 100.0
cd03311332 CIMS_C_terminal_like CIMS - Cobalamine-independent 100.0
PRK00957305 methionine synthase; Provisional 100.0
TIGR01371 750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 100.0
PLN02475 766 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK05222 758 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK06052344 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PF08267310 Meth_synt_1: Cobalamin-independent synthase, N-ter 100.0
cd03310321 CIMS_like CIMS - Cobalamine-independent methonine 100.0
KOG2263 765 consensus Methionine synthase II (cobalamin-indepe 99.98
PRK06438292 hypothetical protein; Provisional 99.97
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 99.96
cd03465330 URO-D_like The URO-D _like protein superfamily inc 99.89
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 99.88
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 99.88
cd03307326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 99.84
PRK00115346 hemE uroporphyrinogen decarboxylase; Validated 99.83
PLN02433345 uroporphyrinogen decarboxylase 99.82
TIGR01464338 hemE uroporphyrinogen decarboxylase. This model re 99.8
cd00717335 URO-D Uroporphyrinogen decarboxylase (URO-D) is a 99.8
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 99.76
cd03308378 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro 99.68
COG0407352 HemE Uroporphyrinogen-III decarboxylase [Coenzyme 99.68
cd03309321 CmuC_like CmuC_like. Proteins similar to the putat 99.56
KOG2872359 consensus Uroporphyrinogen decarboxylase [Coenzyme 98.8
TIGR01496257 DHPS dihydropteroate synthase. This model represen 94.99
PRK08091228 ribulose-phosphate 3-epimerase; Validated 94.98
PLN02334229 ribulose-phosphate 3-epimerase 94.88
PF00834201 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam 94.84
PRK08005210 epimerase; Validated 94.67
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 94.02
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 93.89
cd00739257 DHPS DHPS subgroup of Pterin binding enzymes. DHPS 93.54
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 92.97
PF02581180 TMP-TENI: Thiamine monophosphate synthase/TENI; In 92.89
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 91.78
PRK13753279 dihydropteroate synthase; Provisional 91.68
cd00423258 Pterin_binding Pterin binding enzymes. This family 91.65
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 91.62
PRK14057254 epimerase; Provisional 90.82
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 89.6
PRK03512211 thiamine-phosphate pyrophosphorylase; Provisional 89.51
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 89.41
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 89.23
PF00809210 Pterin_bind: Pterin binding enzyme This Prosite en 88.94
PRK11613282 folP dihydropteroate synthase; Provisional 87.15
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 86.58
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 86.07
KOG3111224 consensus D-ribulose-5-phosphate 3-epimerase [Carb 85.1
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 84.99
TIGR00693196 thiE thiamine-phosphate pyrophosphorylase. This mo 84.74
PRK02615347 thiamine-phosphate pyrophosphorylase; Provisional 84.22
PRK08195 337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 82.72
PRK08999312 hypothetical protein; Provisional 82.58
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 82.52
cd04735353 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN 81.17
PRK05581220 ribulose-phosphate 3-epimerase; Validated 80.01
>PRK01207 methionine synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-57  Score=407.63  Aligned_cols=254  Identities=30%  Similarity=0.470  Sum_probs=234.5

Q ss_pred             ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250            1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP   80 (270)
Q Consensus         1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~   80 (270)
                      |++||+++|+||++  +||+|+||++||++|+|+|+++++.|+++++++++++.+++|+|++||||+|++.|+.+++|.+
T Consensus        65 mv~~f~~~l~G~~~--~g~vr~y~~~~~r~Pii~g~i~~~~~~~v~e~~~a~~~t~kpvK~~ltGP~Ti~~~S~~~~Y~~  142 (343)
T PRK01207         65 MYEHPAERIKGIIF--YGMVRSFDNRYYRKGSIIDRMERRSSFHLDEVEFVADNTKKPIKVPITGPYTMMDWSFNDFYRD  142 (343)
T ss_pred             HHHHHHHhcCCeEe--cCeEEEeccccccCCeEEeeccCCCCCcHHHHHHHHHccCCCcEEEecCHHHHHHHhcccccCC
Confidence            89999999999998  6999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHc------CCC-EEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEee
Q 024250           81 RHETCYQIALAIKDEVEDLEKA------GIN-VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHM  153 (270)
Q Consensus        81 ~~~l~~~l~~~~~~~~~~l~~~------G~~-~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~  153 (270)
                      +++++.++|.++++|+++|.++      |+. +||||||+|+.        +..+.+++++++|.++++++.  ++++|+
T Consensus       143 ~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~--------~~~~l~~av~a~n~~~~gv~~--~i~~H~  212 (343)
T PRK01207        143 RYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTT--------HPDEMDIVVDSINKSVYGIDN--EFSIHV  212 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCC--------ChHHHHHHHHHHHHHHhCCCC--cEEEEE
Confidence            9999999999999999999999      898 69999999973        234688999999999999974  589999


Q ss_pred             ccC-CchhHHHHHHhCCCCEEEEEccCC-------------CchhHHHhhhc---ccCCCeeeceEecCCCCCCCCHHHH
Q 024250          154 CYS-NFNDIIHSIIDMDADVITIENSRS-------------DEKLLSVFREG---VKYGAGIGPGVYDIHSPRIPSTEEI  216 (270)
Q Consensus       154 c~g-~~~~~~~~l~~~~vd~l~ld~~~~-------------~~~~l~~l~~~---~~~~~~l~~GvVd~~~~~~e~~e~v  216 (270)
                      ||| ++.++++.|.++++|.+++|++++             +.+.|+.|.+.   .+.++.|++||+|++++.+|++|+|
T Consensus       213 C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I  292 (343)
T PRK01207        213 CYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLI  292 (343)
T ss_pred             EcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeEEeCCCCCCCCHHHH
Confidence            999 899999999999999999999843             24677888642   2245679999999999999999999


Q ss_pred             HHHHHHHhccc-cCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 024250          217 ADRINKMLAVL-ETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL  266 (270)
Q Consensus       217 ~~~i~~~~~~~-~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~~~~  266 (270)
                      +++|+++++.+ +++++||+|||||.+++++.|++||++|+++|+.+|+||
T Consensus       293 ~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa~~~r~el  343 (343)
T PRK01207        293 EDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAKNNILKEL  343 (343)
T ss_pred             HHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999 799999999999999999999999999999999999874

>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK04326 methionine synthase; Provisional Back     alignment and domain information
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 Back     alignment and domain information
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06233 hypothetical protein; Provisional Back     alignment and domain information
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>PRK00957 methionine synthase; Provisional Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] Back     alignment and domain information
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06438 hypothetical protein; Provisional Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated Back     alignment and domain information
>PLN02433 uroporphyrinogen decarboxylase Back     alignment and domain information
>TIGR01464 hemE uroporphyrinogen decarboxylase Back     alignment and domain information
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC Back     alignment and domain information
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>cd03309 CmuC_like CmuC_like Back     alignment and domain information
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR01496 DHPS dihydropteroate synthase Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PLN02334 ribulose-phosphate 3-epimerase Back     alignment and domain information
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 Back     alignment and domain information
>PRK08005 epimerase; Validated Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK13753 dihydropteroate synthase; Provisional Back     alignment and domain information
>cd00423 Pterin_binding Pterin binding enzymes Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder Back     alignment and domain information
>PRK11613 folP dihydropteroate synthase; Provisional Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase Back     alignment and domain information
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>PRK08999 hypothetical protein; Provisional Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
1u1h_A765 A. Thaliana Cobalamine Independent Methionine Synth 1e-144
2nq5_A755 Crystal Structure Of Methyltransferase From Strepto 3e-87
3l7r_A779 Crystal Structure Of Mete From Streptococcus Mutans 4e-87
3pph_A789 Crystal Structure Of The Candida Albicans Methionin 4e-87
3ppf_A789 Crystal Structure Of The Candida Albicans Methionin 4e-87
3ppc_A789 Crystal Structure Of The Candida Albicans Methionin 6e-87
1t7l_A766 Crystal Structure Of Cobalamin-Independent Methioni 2e-82
1xr2_A766 Crystal Structure Of Oxidized T. Maritima Cobalamin 2e-82
1xpg_A765 Crystal Structure Of T. Maritima Cobalamin-Independ 9e-78
1xdj_A766 Crystal Structure Of T. Maritima Cobalamin-Independ 1e-77
3rpd_A357 The Structure Of A B12-Independent Methionine Synth 1e-17
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 Back     alignment and structure 
Iteration: 1

 Score =  508 bits (1307), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/269 (91%), Positives = 255/269 (94%)
Query: 2   VEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKG 61
           VEYFGEQLSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKA TVFWS+ AQS T+RP KG
Sbjct: 497 VEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAXTVFWSAXAQSXTSRPXKG 556
Query: 62  MLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLR 121
            LTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPLR
Sbjct: 557 XLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLR 616
Query: 122 KSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSD 181
           KSEHAFYLDWAVHSFRITNCGVQD+TQIHTH CYS+FNDIIHSIID DADVITIENSRSD
Sbjct: 617 KSEHAFYLDWAVHSFRITNCGVQDSTQIHTHXCYSHFNDIIHSIIDXDADVITIENSRSD 676
Query: 182 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLK 241
           EKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NK LAVLE NILWVNPDCGLK
Sbjct: 677 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKXLAVLEQNILWVNPDCGLK 736
Query: 242 TRKYTEVKPALSNMVAAAKLLRTQLASAK 270
           TRKYTEVKPAL N V AAKL+R+QLASAK
Sbjct: 737 TRKYTEVKPALKNXVDAAKLIRSQLASAK 765
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 Back     alignment and structure
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 Back     alignment and structure
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 Back     alignment and structure
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 Back     alignment and structure
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 Back     alignment and structure
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 Back     alignment and structure
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 Back     alignment and structure
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 Back     alignment and structure
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 Back     alignment and structure
>pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase From Shewanella Sp. W3-18-1 In Complex With Selenomethionine. Length = 357 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 1e-163
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 5e-08
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 1e-156
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 9e-21
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 1e-156
1t7l_A 766 5-methyltetrahydropteroyltriglutamate-- homocystei 4e-06
3rpd_A357 Methionine synthase (B12-independent); structural 1e-153
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 1e-149
3ppg_A 789 5-methyltetrahydropteroyltriglutamate--homocystei 4e-16
1ypx_A375 Putative vitamin-B12 independent methionine synth 7e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 Back     alignment and structure
 Score =  471 bits (1214), Expect = e-163
 Identities = 255/270 (94%), Positives = 265/270 (98%)

Query: 1   MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
           MVEYFGEQLSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKAMTVFWS++AQSMT+RPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEHAFYLDWAVHSFRITNCGVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQLASAK 270
           KTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct: 736 KTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
3rpd_A357 Methionine synthase (B12-independent); structural 100.0
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 100.0
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1ypx_A375 Putative vitamin-B12 independent methionine synth 100.0
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
3ppg_A 789 5-methyltetrahydropteroyltriglutamate--homocystei 100.0
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1t7l_A 766 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
2inf_A359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 99.87
1j93_A353 UROD, uroporphyrinogen decarboxylase; beta barrel, 99.84
1r3s_A367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 99.8
3cyv_A354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 99.8
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 99.78
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 99.77
4exq_A368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 99.74
1aj0_A282 DHPS, dihydropteroate synthase; antibiotic, resist 95.86
1tx2_A297 DHPS, dihydropteroate synthase; folate biosynthesi 95.55
1eye_A280 DHPS 1, dihydropteroate synthase I; alpha-beta bar 95.54
3cu2_A237 Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib 94.87
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 94.11
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 93.77
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 93.48
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 92.89
2vp8_A318 Dihydropteroate synthase 2; RV1207 transferase, fo 92.44
3nl6_A 540 Thiamine biosynthetic bifunctional enzyme; thiamin 92.34
2yci_X271 5-methyltetrahydrofolate corrinoid/iron sulfur PR 92.03
1tqx_A227 D-ribulose-5-phosphate 3-epimerase, putative; stru 91.2
3tr9_A314 Dihydropteroate synthase; biosynthesis of cofactor 90.8
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 89.63
2y5s_A294 DHPS, dihydropteroate synthase; transferase, folat 88.51
3k13_A300 5-methyltetrahydrofolate-homocysteine methyltrans; 87.14
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 86.97
3mcm_A442 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine 86.68
2vef_A314 Dihydropteroate synthase; antibiotic resistance, t 86.35
4hb7_A270 Dihydropteroate synthase; transferase; 1.95A {Stap 84.46
1rpx_A230 Protein (ribulose-phosphate 3-epimerase); chloropl 83.74
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 83.7
1yad_A221 Regulatory protein TENI; TIM barrel, transcription 83.56
1q7z_A566 5-methyltetrahydrofolate S-homocysteine methyltran 83.46
1xi3_A215 Thiamine phosphate pyrophosphorylase; structural g 82.25
2dqw_A294 Dihydropteroate synthase; dimer, structural genomi 81.65
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 81.48
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Back     alignment and structure
Probab=100.00  E-value=1.1e-52  Score=381.49  Aligned_cols=253  Identities=25%  Similarity=0.468  Sum_probs=230.4

Q ss_pred             ChHHHhhcCCCceeecccceeecCCcc-ccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCC
Q 024250            1 MVEYFGEQLSGFAFTANGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQ   79 (270)
Q Consensus         1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~-~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~   79 (270)
                      |+.||+++|+||++..++|+++| +++ +++|+|+|++++++|+++++++++++.+++|+|++||||+|++.++.+.+|.
T Consensus        82 ~~~~f~~~l~G~~~~~~~~v~~~-~~~~~~~p~i~G~v~~~~~~~v~~~~~~~~~t~~~vK~~lpgP~t~~~~~~~~~y~  160 (357)
T 3rpd_A           82 FVTTFIEHLNGVDFSKRKIVKIR-DRYDASVPTVVGPVSRQKSVFVEDAKFLRKQTTQPIKWALPGPMTMIDTLYDDHYK  160 (357)
T ss_dssp             TTHHHHHTSEEEEEEEEEEEEET-TTEEEEEEEEEEEEECCSCSSHHHHHHHHHHCSSCBEEEEECHHHHHTSSEESSSC
T ss_pred             HHHHHHHhCCCeeeccCcccccc-CCceeeCCEEEccCCCCCCCcHHHHHHHHhhccCCceEEeCCHHHHHHHhhhccCC
Confidence            88999999999999888999999 554 5789999999999999999999999999899999999999999999988899


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccC---
Q 024250           80 PRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS---  156 (270)
Q Consensus        80 ~~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g---  156 (270)
                      ++++++.+|+.+|++++++|.++||++||||||+|..       .++.+.+++++++|.++++++  ..+.+|+|||   
T Consensus       161 ~~~e~~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~-------~~~~~~~~~v~~~n~~~~~~~--~~~~iHiC~G~~~  231 (357)
T 3rpd_A          161 SREKLAWEFAKILNEEAKELEAAGVDIIQFDEPAFNV-------FFDEVNDWGIACLERAIEGLK--CETAVHICYGYGI  231 (357)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGT-------CHHHHHHTHHHHHHHHHTTCC--SEEEEEECSCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCccccc-------cHHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcc
Confidence            9999999999999999999999999999999999985       345678899999999999997  4568899986   


Q ss_pred             ---------------CchhHHHHHHhCCCCEEEEEccCC--CchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHH
Q 024250          157 ---------------NFNDIIHSIIDMDADVITIENSRS--DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADR  219 (270)
Q Consensus       157 ---------------~~~~~~~~l~~~~vd~l~ld~~~~--~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~  219 (270)
                                     ++.++++.|.++++|+|++|+.+.  +.+.++.+     .++.|++||||++++++|++|+++++
T Consensus       232 ~~n~d~~~t~~~~~g~y~~i~~~l~~~~~D~i~lE~~~~r~~~e~l~~~-----~~k~v~lGvvd~~s~~ve~~eev~~r  306 (357)
T 3rpd_A          232 KANTDWKKTLGSEWRQYEEVFPKLQKSNIDIISLECHNSHVPMELLELI-----RGKKVMVGAIDVATDTIETAEEVADT  306 (357)
T ss_dssp             HHHHHHHTTSCSCCCGGGGTHHHHHHSSCCEEEECCTTCCCCGGGGGGG-----TTSEEEEECSCTTCSSCCCHHHHHHH
T ss_pred             CCccccccccccccCcHHHHHHHHHhCCCCEEEEEecCCCCChHHHHhc-----CCCEEEeccccCcCCCCCCHHHHHHH
Confidence                           357899999999999999999764  24444433     36799999999999999999999999


Q ss_pred             HHHHhccccCCceEecCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHhh
Q 024250          220 INKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS  268 (270)
Q Consensus       220 i~~~~~~~~~~~l~vsp~Cgl~~~~~~~a~~kL~~l~~~a~~~~~~~~~  268 (270)
                      ++++++++|.+++||+|+|||++++++.|++||++|+++|+.+|+++..
T Consensus       307 i~~a~~~v~~~~l~lsPdCGl~~~~~~~a~~kL~~mv~aa~~~r~~l~~  355 (357)
T 3rpd_A          307 LRKALKFVDADKLYPCTNCGMTPLSHQVTRGKLNALSAGAEIVRKELLA  355 (357)
T ss_dssp             HHHHHTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999864
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Back     alignment and structure
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Back     alignment and structure
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A Back     alignment and structure
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... Back     alignment and structure
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 Back     alignment and structure
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* Back     alignment and structure
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Back     alignment and structure
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* Back     alignment and structure
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* Back     alignment and structure
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* Back     alignment and structure
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* Back     alignment and structure
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Back     alignment and structure
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 270
d1u1ha2365 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig 1e-96
d1u1ha1394 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu 9e-62
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  286 bits (732), Expect = 1e-96
 Identities = 250/265 (94%), Positives = 260/265 (98%)

Query: 1   MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMK 60
           MVEYFGEQLSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKAMTVFWS++AQSMT+RPMK
Sbjct: 101 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 160

Query: 61  GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEK GI VIQIDEAALREGLPL
Sbjct: 161 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 220

Query: 121 RKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEHAFYLDWAVHSFRITNCGVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRS
Sbjct: 221 RKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRS 280

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS+EEIADR+NKMLAVLE NILWVNPDCGL
Sbjct: 281 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL 340

Query: 241 KTRKYTEVKPALSNMVAAAKLLRTQ 265
           KTRKYTEVKPAL NMV AAKL+R+Q
Sbjct: 341 KTRKYTEVKPALKNMVDAAKLIRSQ 365
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d1u1ha2365 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1u1ha1394 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1j93a_343 Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic 99.66
d1r3sa_356 Uroporphyrinogen decarboxylase, UROD {Human (Homo 99.65
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 93.09
d1ad1a_264 Dihydropteroate synthetase {Staphylococcus aureus 90.04
d1ajza_282 Dihydropteroate synthetase {Escherichia coli [TaxI 89.9
d1xi3a_206 Thiamin phosphate synthase {Archaeon (Pyrococcus f 87.39
d1rpxa_230 D-ribulose-5-phosphate 3-epimerase {Potato (Solanu 85.31
d1tqxa_221 D-ribulose-5-phosphate 3-epimerase {Plasmodium fal 81.95
d1tqja_221 D-ribulose-5-phosphate 3-epimerase {Synechocystis 80.91
d1h1ya_220 D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa 80.75
d2tpsa_226 Thiamin phosphate synthase {Bacillus subtilis [Tax 80.75
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.4e-54  Score=391.39  Aligned_cols=265  Identities=94%  Similarity=1.477  Sum_probs=247.5

Q ss_pred             ChHHHhhcCCCceeecccceeecCCccccCCEEEeeccCCCCCcHHHHHHHHhccCCCcccccchHHHHHhhhccCCCCc
Q 024250            1 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQP   80 (270)
Q Consensus         1 ~~~~f~~~~~G~~~~~~~~~~~~~~~~~~~p~i~~~i~~~~~~~~~~~~~~~~~~~~~vK~~l~GP~Tla~~~~~~~~~~   80 (270)
                      |+.||+++++|+.++.++|+++++++++..|+++|+++++.+...++++++++.+.+++|++++||+|++.++.+.+|.+
T Consensus       101 ~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~~k~~i~gp~~l~~~~~~~~y~~  180 (365)
T d1u1ha2         101 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQP  180 (365)
T ss_dssp             TTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSHHHHHHHTTSCSSCBEEEEECHHHHHHTSEECSSSC
T ss_pred             HHHHHHHhccCcceeccceeEecCCccccceeecCcccccCcchHHHHHHHHhhccccccccccceeEEeeeccccCCCC
Confidence            68899999999999888999999888889999999999999999999999999988999999999999999998888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCccccCCCCCCccHHHHHHHHHHHHHHHhcCCCCCceEEEeeccCCchh
Q 024250           81 RHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFND  160 (270)
Q Consensus        81 ~~~l~~~l~~~~~~~~~~l~~~G~~~IQiDEP~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH~c~g~~~~  160 (270)
                      ..+++++|+++|++++++|.++||+|||||||+|+..++....+++.+.+.+.+++|.+..+++.+..+++|+|+||+.+
T Consensus       181 ~~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~v~~~~~~g~~~~  260 (365)
T d1u1ha2         181 RHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFND  260 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHHHHHHHHHHHHHHHTTSCTTSEEEEEESCSCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcEEEeCchHHhhhhccccccHHHHHHHHHHHHHHHHhcccccceEEEEecccccch
Confidence            99999999999999999999999999999999999887766667788899999999999999987788999999999999


Q ss_pred             HHHHHHhCCCCEEEEEccCCCchhHHHhhhcccCCCeeeceEecCCCCCCCCHHHHHHHHHHHhccccCCceEecCCCCC
Q 024250          161 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGL  240 (270)
Q Consensus       161 ~~~~l~~~~vd~l~ld~~~~~~~~l~~l~~~~~~~~~l~~GvVd~~~~~~e~~e~v~~~i~~~~~~~~~~~l~vsp~Cgl  240 (270)
                      .++.+.++++|++++|+.+.+.+.++.+....+.+|.|++||||++|+|+|++|+|++||+++++++|++|++|+|||||
T Consensus       261 ~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVVd~r~~~~E~~e~v~~ri~~a~~~v~~erl~lspdCGf  340 (365)
T d1u1ha2         261 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL  340 (365)
T ss_dssp             THHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCSCTTSSSCCCHHHHHHHHHHHHTTSCTTTBCBCCSSCC
T ss_pred             hHHHHhcCCcccchhhhccCchHHHHHHHhhCCCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCChhhEEEcCCCCC
Confidence            99999999999999999886666666666544678999999999999999999999999999999999999999999999


Q ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHH
Q 024250          241 KTRKYTEVKPALSNMVAAAKLLRTQ  265 (270)
Q Consensus       241 ~~~~~~~a~~kL~~l~~~a~~~~~~  265 (270)
                      ++++++.|++||++|+++|+.+|+|
T Consensus       341 ~~l~~~~a~~KL~~lv~~a~~vr~e  365 (365)
T d1u1ha2         341 KTRKYTEVKPALKNMVDAAKLIRSQ  365 (365)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999985
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Back     information, alignment and structure
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Back     information, alignment and structure
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure