Citrus Sinensis ID: 024270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNQLSQLNSKIHL
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccEEEEEEEEEcccccEEEEcccccccccccEEEEEEccccccccccEEEEccccccccccccEEcEEcccEEEcEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccEEEcccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEcEEEccccccccEEEEEEEEccccccEEEEccccccccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTIKSIIHDMMwrrshrvvgdaadhdmaggssptccwanlPQELLREILAKIEAadsawpsrRSVVACAGVCRSWRQITKEIVkvpelsgyltfpisvkqpgprdyLLQCFIkrnrstqtYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLhsddmskgsstylgklrsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNVlgsrykfdfcpllllrcnqESINYYRIFVNQLSqlnskihl
Flexible Loop (DISEMBL)
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEaadsawpsrrSVVACAGVCRSWRQITKEivkvpelsgyltfpisvkqpgpRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIislhsddmskgSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLkqvspripfgnySVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNqlsqlnskihl
Low Complexity Region (SEG)
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNQLSQLNSKIHL
Disordered region (IsUnstruct)
*****IIHDMMWRRSHRVVGDAAD**MAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDM***SSTYLGKLRSNFLGTKFIVYDG*********************QVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNQLS********
Disordered Region (DISOPRED)
***KS******************************************************************************************ISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPP**********************RIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCN***********************
Disordered Region (DISEMBL)
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNQLSQLNSKIHL
Disordered Region (DISPRO)
**********************************CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA************ANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNQLSQLNS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQESINYYRIFVNQLSQLNSKIHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q10LG8	403	Tubby-like F-box protein	yes	no	0.862	0.578	0.633	3e-86
Q8VY21	406	Tubby-like F-box protein	yes	no	0.851	0.566	0.611	9e-83
Q9SQU1	380	Tubby-like F-box protein	no	no	0.833	0.592	0.645	9e-79
Q8H485	406	Tubby-like F-box protein	yes	no	0.733	0.487	0.661	3e-78
Q6NPQ1	389	Tubby-like F-box protein	no	no	0.848	0.588	0.627	5e-76
Q75HX5	445	Tubby-like F-box protein	no	no	0.729	0.442	0.592	5e-69
Q944S3	429	Tubby-like F-box protein	no	no	0.718	0.452	0.569	5e-66
Q9ZP59	455	Tubby-like F-box protein	no	no	0.725	0.430	0.584	5e-66
Q2QXB2	445	Tubby-like F-box protein	no	no	0.733	0.444	0.565	1e-65
Q8LJA9	448	Tubby-like F-box protein	no	no	0.744	0.448	0.566	1e-64

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  318 bits (814), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/248 (63%), Positives = 186/248 (75%), Gaps = 15/248 (6%)

Query: 1   MTIKSIIHDM-----------MWRRSHRVVGDA----ADHDMAGGSSPTCCWANLPQELL 45
           M+ +S+I +M           +  RSHR  G A    A       +    CWA LP ELL
Sbjct: 1   MSFRSLIQEMRDEFGSISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELL 60

Query: 46  REILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRD 105
           RE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD
Sbjct: 61  REVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRD 120

Query: 106 YLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGS 165
             L+CFI+RNR+TQTY+LY+ LT ALADDGKFLLAARKCR+ TCTDY+ISL   DMSKGS
Sbjct: 121 GTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGS 180

Query: 166 STYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISY 225
           +TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V+HISY
Sbjct: 181 NTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISY 240

Query: 226 ELNVLGSR 233
           ELNVLG+R
Sbjct: 241 ELNVLGAR 248

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  306 bits (785), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 154/252 (61%), Positives = 188/252 (74%), Gaps = 22/252 (8%)

Query: 1   MTIKSIIHDMMWR------------------RSHRVVGDAADHDMAGGSSPTCCWANLPQ 42
           M+ KS+I DM                     RS RVV D +    A   S   CWA++P 
Sbjct: 1   MSFKSLIQDMRGELGSISRKGFDVRFGYGRSRSQRVVQDTSVPVDAFKQS---CWASMPP 57

Query: 43  ELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPG 102
           ELLR++L +IE ++  WPSR++VV+CAGVCR+WR+I KEIV+VPELS  LTFPIS+KQPG
Sbjct: 58  ELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPG 117

Query: 103 PRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDM 161
           PR  L+QC+I RNRS QTY+LYL L  A + DDGKFLLAA++ RR TCTDYIISL+ DD+
Sbjct: 118 PRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDV 177

Query: 162 SKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVA 221
           S+GS+TY+GKLRSNFLGTKF VYD QP + G ++TR+RS+RL +LKQVSPRIP GNY VA
Sbjct: 178 SRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVA 237

Query: 222 HISYELNVLGSR 233
           HISYELNVLGSR
Sbjct: 238 HISYELNVLGSR 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1

 Score =  293 bits (750), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 179/234 (76%), Gaps = 9/234 (3%)

Query: 1   MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-W 59
           MT +S++ +M   R HRVV  AA       SS    W+ LP+ELLREIL ++E  D   W
Sbjct: 1   MTFRSLLQEMR-SRPHRVVHAAAS---TANSSDPFSWSELPEELLREILIRVETVDGGDW 56

Query: 60  PSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ 119
           PSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ
Sbjct: 57  PSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQ 116

Query: 120 TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 179
           +YHLYL LT +L D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNFLGT
Sbjct: 117 SYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGT 176

Query: 180 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           KF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGSR
Sbjct: 177 KFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGSR 226

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 161/198 (81%)

Query: 36  CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFP 95
           CW  LP ELLRE+LA++E ++  WP RR VVACAGVCRSWR I +EIV+ PE SG LTFP
Sbjct: 54  CWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFP 113

Query: 96  ISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIIS 155
           IS+KQPGPRD  ++CFI RNR+TQTY+LY+ LT+AL DDGKFLLAARKCRR TCT+Y+IS
Sbjct: 114 ISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLIS 173

Query: 156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
           L  +D+SK + +Y+GKLRSNFLGTKF +YD  PP+AG  +++ +S R+     +SPRIP 
Sbjct: 174 LDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPA 233

Query: 216 GNYSVAHISYELNVLGSR 233
           GNY V+HISYELNVLGSR
Sbjct: 234 GNYPVSHISYELNVLGSR 251

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1

 Score =  284 bits (726), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/239 (62%), Positives = 177/239 (74%), Gaps = 10/239 (4%)

Query: 1   MTIKSIIHDMMWRRSHRVVGD---AADHDMAGGSSPTCCWANLPQELLREILAKIEAADS 57
           MT++S+I +M   R HRVV D   AA  D    SS    W+ +P+ELLREIL ++EAAD 
Sbjct: 1   MTLRSLILEMR-SRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADG 59

Query: 58  A-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNR 116
             WPSRRSVVACAGVCR WR +  E V VPE+S  LTFPIS+KQPGPRD L+QCFIKRNR
Sbjct: 60  GGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNR 119

Query: 117 STQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 176
            TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIISL SDDMS+ S  Y+GK+RSNF
Sbjct: 120 ITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNF 179

Query: 177 LGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           LGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+Y VAHI+YELNVLGSR
Sbjct: 180 LGTKFTVFDGNLLPSTGAAKLRKSRS---YNPAKVSAKVPLGSYPVAHITYELNVLGSR 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1

 Score =  261 bits (666), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 164/199 (82%), Gaps = 2/199 (1%)

Query: 37  WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPI 96
           WA+LP ELLR+++ ++EA++S WPSR+ VV+CA VC++WR++ KEIV  PE  G LTFP+
Sbjct: 59  WASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPL 118

Query: 97  SVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIIS 155
           S+KQPGPRD ++QCFIKR++S  TYHLYL L+ A LAD GKFLL+A++ R+ TCT+Y+IS
Sbjct: 119 SLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVIS 178

Query: 156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTR-SRSTRLANLKQVSPRIP 214
           + +D++S+ SSTY+GKLRSNFLGTKFI+YD QP + GA +    RS+R  N K+VSP++P
Sbjct: 179 MDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMP 238

Query: 215 FGNYSVAHISYELNVLGSR 233
            G+Y++A ++YELNVLG+R
Sbjct: 239 SGSYNIAQVTYELNVLGTR 257

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q944S3|TLP5_ARATH Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1

 Score =  251 bits (640), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 163/202 (80%), Gaps = 8/202 (3%)

Query: 37  WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPI 96
           WANLP  LLR+++ K++ ++S WP+R+ VVACAGVC++WR + K+IVK PE SG LTFP+
Sbjct: 55  WANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPV 114

Query: 97  SVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIIS 155
           S+KQPGPRD ++QC+IKR++S  TYHLYLSL+ A L + GKFLL+A++ RRAT T+Y+IS
Sbjct: 115 SLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVIS 174

Query: 156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKM----TRSRSTRLANLKQVSP 211
           + +D++S+ SSTY+GKL+SNFLGTKFIVYD  P +  +++     RSRS    N K+VSP
Sbjct: 175 MDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRS---FNSKKVSP 231

Query: 212 RIPFGNYSVAHISYELNVLGSR 233
           ++P G+Y++A ++YELN+LG+R
Sbjct: 232 KVPSGSYNIAQVTYELNLLGTR 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1

 Score =  251 bits (640), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 159/202 (78%), Gaps = 6/202 (2%)

Query: 37  WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPI 96
           WANLP ELLR+++ ++E ++S WP+RR VVACA VCRSWR + KEIV+ PELSG +TFP+
Sbjct: 57  WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPV 116

Query: 97  SVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIIS 155
           S+KQPGPRD  +QCFIKR++S  TYHLYL L+ A L ++GKFLL+A++ RR T T+Y+IS
Sbjct: 117 SLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVIS 176

Query: 156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH----AGAKMTRSRSTRLANLKQVSP 211
           +H+D +S+ S+TY+GK+RSNFLGTKFI+YD QP +    A A      S R  + K+VSP
Sbjct: 177 MHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYS-KRVSP 235

Query: 212 RIPFGNYSVAHISYELNVLGSR 233
           ++P G+Y +A +SYELNVLG+R
Sbjct: 236 KVPSGSYKIAQVSYELNVLGTR 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 113/200 (56%), Positives = 161/200 (80%), Gaps = 2/200 (1%)

Query: 36  CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFP 95
           CWANLP ELLR+++ ++EA+++AWPSR++VVACA VCR+WR + +EIVK PE  G +TFP
Sbjct: 58  CWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFP 117

Query: 96  ISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYII 154
           +S+KQPGPR+  +QCFIKR++STQTY+LYL L++A L + GKFLL+A++  RATCT+Y I
Sbjct: 118 VSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTI 177

Query: 155 SLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRS-RSTRLANLKQVSPRI 213
            + +D+ S+ S+ Y+GKLRSN LGTKF++YD QPP   A +++S +++R    ++VSP+ 
Sbjct: 178 FMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKN 237

Query: 214 PFGNYSVAHISYELNVLGSR 233
           P   YS+A +SYELNVLG+R
Sbjct: 238 PSSTYSIAQVSYELNVLGTR 257

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1

 Score =  246 bits (628), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 156/203 (76%), Gaps = 2/203 (0%)

Query: 33  PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYL 92
           P   WA+LP ELLRE++ ++EA +S WPSRR+VV  A VCR+WR++ KE V  PE  G L
Sbjct: 55  PESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKL 114

Query: 93  TFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTD 151
           TFP+S+KQPGPRD ++QC+IKRNRS  TYHLYL L+N + A+ GKF+LAA++ R+ TCT+
Sbjct: 115 TFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTE 174

Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTR-SRSTRLANLKQVS 210
           Y IS+ S ++S+ S T +GKLRSNFLGTKFI+YD QPP+ GA +    R+++  N  +VS
Sbjct: 175 YTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVS 234

Query: 211 PRIPFGNYSVAHISYELNVLGSR 233
           P++P   Y++A +SYELNVLG+R
Sbjct: 235 PKVPSVTYNIAQVSYELNVLGTR 257

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255551637	390	phosphoric diester hydrolase, putative [	0.848	0.587	0.759	4e-98
118486104	392	unknown [Populus trichocarpa]	0.844	0.581	0.754	3e-97
449432795	387	PREDICTED: tubby-like F-box protein 3-li	0.855	0.596	0.733	1e-96
357447461	393	Tubby-like F-box protein [Medicago trunc	0.855	0.587	0.728	2e-96
356555565	385	PREDICTED: tubby-like F-box protein 6-li	0.825	0.579	0.748	2e-96
302399101	392	TLP domain class transcription factor [M	0.862	0.594	0.711	2e-95
224107205	395	f-box family protein [Populus trichocarp	0.844	0.577	0.737	3e-95
449518857	386	PREDICTED: LOW QUALITY PROTEIN: tubby-li	0.837	0.585	0.718	5e-95
449454462	386	PREDICTED: tubby-like F-box protein 6-li	0.855	0.598	0.725	7e-95
225436797	405	PREDICTED: tubby-like F-box protein 3-li	0.851	0.567	0.662	2e-91

>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 177/233 (75%), Positives = 198/233 (84%), Gaps = 4/233 (1%)

Query: 5   SIIHDMMWR-RSHRVVGDAADHDMAGGS---SPTCCWANLPQELLREILAKIEAADSAWP 60
           S I  M+ R RSHRVV D      A  S       CWAN+PQELLRE+L +IEA++S+WP
Sbjct: 2   SSIRSMIIRSRSHRVVQDGLAPPHAVESRLGEDISCWANMPQELLREVLMRIEASESSWP 61

Query: 61  SRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQT 120
            R+SVVACAGVCR+WR +TKE+VKVPE+SG LTFPISVKQPGPRD+LLQCFIKR RSTQT
Sbjct: 62  PRKSVVACAGVCRTWRHMTKELVKVPEISGKLTFPISVKQPGPRDFLLQCFIKRCRSTQT 121

Query: 121 YHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTK 180
           Y+LYLSLTNAL DDGK LLAARKCRR TCTDYIISL +DDMSKGSSTY+GKLRSNFLGTK
Sbjct: 122 YYLYLSLTNALTDDGKLLLAARKCRRTTCTDYIISLDADDMSKGSSTYVGKLRSNFLGTK 181

Query: 181 FIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           F V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P GNY +AH+SYELNVLGSR
Sbjct: 182 FTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPAGNYPIAHMSYELNVLGSR 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 198/236 (83%), Gaps = 8/236 (3%)

Query: 3   IKSIIHDMMWRRSHRVV--GDAADHDMAGG---SSPTCCWANLPQELLREILAKIEAADS 57
           IKSII+     RSHRVV    A D  + GG   +  T CWANLPQELLRE+L +IE ++S
Sbjct: 4   IKSIINR---SRSHRVVQYSSAPDLSLFGGGCGAETTSCWANLPQELLREVLIRIEESES 60

Query: 58  AWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRS 117
           +WP R++VVACAGVCRSWR ITKE+VKVPELSG LTFPISVKQPGPRD+LLQCFIKR RS
Sbjct: 61  SWPPRKNVVACAGVCRSWRDITKELVKVPELSGKLTFPISVKQPGPRDFLLQCFIKRCRS 120

Query: 118 TQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFL 177
            QTY LYL L NAL +DGKFLLAARKCRR TCTDYIISL +DDMSKGS+ Y+GKLRSNFL
Sbjct: 121 AQTYRLYLGLNNALTEDGKFLLAARKCRRPTCTDYIISLDTDDMSKGSNAYVGKLRSNFL 180

Query: 178 GTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           GTKF V+DGQPPHAGAKMT+SRS+RL NLKQVSPR+P GNY VA ISYELNVLGSR
Sbjct: 181 GTKFTVFDGQPPHAGAKMTKSRSSRLVNLKQVSPRVPTGNYPVASISYELNVLGSR 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432795|ref|XP_004134184.1| PREDICTED: tubby-like F-box protein 3-like [Cucumis sativus] gi|449495398|ref|XP_004159828.1| PREDICTED: tubby-like F-box protein 3-like [Cucumis sativus]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/233 (73%), Positives = 201/233 (86%), Gaps = 2/233 (0%)

Query: 1   MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWP 60
           M++KSII +M   RS RVV D +  ++ G +    CWA +PQELLRE+L +IE++++AWP
Sbjct: 1   MSLKSIIQEMR-SRSRRVVQDGSTPEV-GDALAQSCWAYMPQELLREVLVRIESSENAWP 58

Query: 61  SRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQT 120
            R++VVACAGVCRSWR+ITKEIVK PE+S  LTFPISVKQPGPRD LL CFIKRNRS QT
Sbjct: 59  PRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQT 118

Query: 121 YHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTK 180
           Y LYLSLT+ALADDGKFLLAARKCRRATCTDYIISLH+DDMSK S T++GKLRSNFLGTK
Sbjct: 119 YCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTK 178

Query: 181 FIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           F ++DGQPPHAGAK+++SRS+RL  LKQVSP++P GNY VAHISYELNVLGSR
Sbjct: 179 FTIFDGQPPHAGAKISKSRSSRLVGLKQVSPKVPAGNYPVAHISYELNVLGSR 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 195/232 (84%), Gaps = 1/232 (0%)

Query: 3   IKSIIHDMMWRRSHRVVGDAADHDMAGGSS-PTCCWANLPQELLREILAKIEAADSAWPS 61
           I++II DM  R    VV    +  +A G S    CWAN+PQELLRE+L +IEA++  WP 
Sbjct: 4   IRNIIEDMRSRSQRVVVAAEKEEKVAVGDSLRQSCWANMPQELLREVLLRIEASEDTWPP 63

Query: 62  RRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTY 121
           R++VVACAGVCRSWR ITKEIVK PE+S  +TFPISVKQPGPR+ LLQCFIKRNRSTQTY
Sbjct: 64  RKNVVACAGVCRSWRVITKEIVKKPEISAMITFPISVKQPGPRENLLQCFIKRNRSTQTY 123

Query: 122 HLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKF 181
           +L+LSLT++L DDGKFLLAARKCRR TCTDYIISL +DDMS+GS+ Y+GKLRSNFLGTKF
Sbjct: 124 YLFLSLTSSLGDDGKFLLAARKCRRPTCTDYIISLDADDMSRGSNNYVGKLRSNFLGTKF 183

Query: 182 IVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
            +YDGQPPHAGAK T+SRSTRL NLKQVSP++P GNY VAHISYELNVLGSR
Sbjct: 184 TIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSR 235

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 193/223 (86%)

Query: 11  MWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAG 70
           M  +S RVV +  + +  G S    CWAN+PQELLRE+L +IEA++ AWP R+SVVACAG
Sbjct: 7   MRSQSQRVVQEQEEAECVGDSMRQSCWANMPQELLREVLFRIEASEDAWPPRKSVVACAG 66

Query: 71  VCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA 130
           VCRSWRQIT +IVK PELS  +TFPISVKQPGPR+ LL+CFIKRNRS+QTY+LYLSLTN 
Sbjct: 67  VCRSWRQITIDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSSQTYYLYLSLTNT 126

Query: 131 LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH 190
           LA+DGKFLLAARKCRR TCTDYIISL +DDMSKGS++Y+GKLRSNFLGTKF +YDGQPPH
Sbjct: 127 LAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPH 186

Query: 191 AGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           AGAK+ +SRSTRL NLKQVSP++P GNY VAHISYELNVLGSR
Sbjct: 187 AGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSR 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 196/236 (83%), Gaps = 3/236 (1%)

Query: 1   MTIKSIIHDMMWRRSHRVVGDAADH---DMAGGSSPTCCWANLPQELLREILAKIEAADS 57
           M+I+SII DM + RS RVV D+A        G S    CWA +PQELLRE+L +IEA+++
Sbjct: 1   MSIRSIIQDMKFSRSQRVVQDSAARPGGQAVGESLKQSCWAQMPQELLREVLVRIEASEA 60

Query: 58  AWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRS 117
           AWP R+SVVACAGVCRSWR +TKEIVK PELSG LTFPISVKQPGPRD L+QCFIKRNRS
Sbjct: 61  AWPPRKSVVACAGVCRSWRHLTKEIVKAPELSGKLTFPISVKQPGPRDDLVQCFIKRNRS 120

Query: 118 TQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFL 177
            QTY+L+L LT AL D+GKFLLAARK +R TCTDY+ISL++DDMSKGSS Y+GKLRSNFL
Sbjct: 121 DQTYYLFLGLTPALIDEGKFLLAARKFKRPTCTDYVISLYADDMSKGSSYYVGKLRSNFL 180

Query: 178 GTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           GTKF ++DGQP H+GAK+ +SRSTRL NLKQVSPR+P GNY VA I YELN+LGSR
Sbjct: 181 GTKFTIFDGQPSHSGAKIAKSRSTRLVNLKQVSPRVPAGNYPVAQIQYELNMLGSR 236

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/236 (73%), Positives = 201/236 (85%), Gaps = 8/236 (3%)

Query: 3   IKSIIHDMMWRRSHRVVGDAADHDM----AGGSSPTC-CWANLPQELLREILAKIEAADS 57
           +KSII+      SHRVV  ++  ++    AGG++ T  CWANLPQELLRE+L +IE ++S
Sbjct: 4   LKSIINRST---SHRVVQYSSAPELNLFAAGGAAETASCWANLPQELLREVLVRIEESES 60

Query: 58  AWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRS 117
           +WP R++VVACAGVCRSWR ITK++VKVPELSG +TFPISVKQPGPR+ LLQCFIKR RS
Sbjct: 61  SWPPRKNVVACAGVCRSWRHITKDLVKVPELSGKITFPISVKQPGPREQLLQCFIKRCRS 120

Query: 118 TQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFL 177
           TQTY LYLSL NAL +DGKFLLAARKCRR TCTDYIISL +DDMSKGS+TY GKLRSNFL
Sbjct: 121 TQTYRLYLSLNNALTEDGKFLLAARKCRRPTCTDYIISLDTDDMSKGSNTYAGKLRSNFL 180

Query: 178 GTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           GTKF V+DGQPPHAGAKMT+S S+RL NLKQVSPR+P GNY VA+ISYELNVLGSR
Sbjct: 181 GTKFTVFDGQPPHAGAKMTKSYSSRLVNLKQVSPRVPTGNYPVANISYELNVLGSR 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518857|ref|XP_004166452.1| PREDICTED: LOW QUALITY PROTEIN: tubby-like F-box protein 6-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 171/238 (71%), Positives = 200/238 (84%), Gaps = 12/238 (5%)

Query: 1   MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPT-----CCWANLPQELLREILAKIEAA 55
           M++K+I  DM   RS  VV DA+        +PT      CWAN+PQELLRE+L +IEA+
Sbjct: 1   MSLKTIFQDMR-SRSRCVVQDAS------AXAPTDALDQSCWANMPQELLREVLMRIEAS 53

Query: 56  DSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRN 115
           +++WP R+SVVACAGVCRSWR ITKEIVK PELSG LTFPIS+KQPG RD LLQCFIKRN
Sbjct: 54  ETSWPFRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRN 113

Query: 116 RSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSN 175
           RS QTY+L+LSLT+AL DDGKFLLAARKC+R T TDYIISLH++D+SKGSSTY+GKLRSN
Sbjct: 114 RSNQTYYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSN 173

Query: 176 FLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           FLGTKF ++DGQPPH+GAK+ +SRSTRL NLKQVSP++P GNY VAHISYELNVLGSR
Sbjct: 174 FLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSR 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454462|ref|XP_004144973.1| PREDICTED: tubby-like F-box protein 6-like [Cucumis sativus] gi|449470884|ref|XP_004153139.1| PREDICTED: tubby-like F-box protein 6-like [Cucumis sativus]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 169/233 (72%), Positives = 198/233 (84%), Gaps = 2/233 (0%)

Query: 1   MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWP 60
           M++K+I  DM   RS  VV DA+          +C WAN+PQELLRE+L +IEA++++WP
Sbjct: 1   MSLKTIFQDMR-SRSRCVVQDASAPPPTDALDQSC-WANMPQELLREVLMRIEASETSWP 58

Query: 61  SRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQT 120
            R+SVVACAGVCRSWR ITKEIVK PELSG LTFPIS+KQPG RD LLQCFIKRNRS QT
Sbjct: 59  FRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRNRSNQT 118

Query: 121 YHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTK 180
           Y+L+LSLT+AL DDGKFLLAARKC+R T TDYIISLH++D+SKGSSTY+GKLRSNFLGTK
Sbjct: 119 YYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTK 178

Query: 181 FIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
           F ++DGQPPH+GAK+ +SRSTRL NLKQVSP++P GNY VAHISYELNVLGSR
Sbjct: 179 FTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSR 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/252 (66%), Positives = 195/252 (77%), Gaps = 22/252 (8%)

Query: 1   MTIKSIIHDM-------------------MWRRSHRVVGDAADHDMAGGSSPTCCWANLP 41
           M+ KSII DM                   +  RSHRVV D++   M   +    CWAN+P
Sbjct: 1   MSFKSIIQDMRGEFGSISRKGFEVKFNYGLRSRSHRVVQDSS---MVVDALRQSCWANMP 57

Query: 42  QELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQP 101
            ELLR++L +IEA++S WP R++VVACAGVCRSWR+ITKEIVK PELSG LTFPIS+KQP
Sbjct: 58  PELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQP 117

Query: 102 GPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDM 161
           GPR  LLQC+IKRNRS QTYHLYL L  A  DDGKFLLAARKCRR TCTDYIISL++DD+
Sbjct: 118 GPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDV 177

Query: 162 SKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVA 221
           SKGS+TY+GKLRSNFLGTKF VYD QPP+AGA++++SRSTR    +QVSPR+P GNY VA
Sbjct: 178 SKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVA 237

Query: 222 HISYELNVLGSR 233
           HISYELNVLGSR
Sbjct: 238 HISYELNVLGSR 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.833	0.592	0.649	1.4e-73
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.848	0.588	0.627	6.7e-72
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.725	0.430	0.584	4.8e-62
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.729	0.459	0.562	7.9e-62
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.740	0.449	0.553	9.3e-59
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.803	0.550	0.513	8.6e-56
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.755	0.538	0.514	9.9e-55
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.7	0.457	0.55	3e-53
MGI|MGI:1861600	562	Tulp2 "tubby-like protein 2" [	0.303	0.145	0.439	1.2e-12
MGI|MGI:2651573	505	Tub "tubby candidate gene" [Mu	0.437	0.233	0.360	4.8e-12

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 152/234 (64%), Positives = 180/234 (76%)

Query:     1 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-W 59
             MT +S++ +M   R HRVV  AA    A  S P   W+ LP+ELLREIL ++E  D   W
Sbjct:     1 MTFRSLLQEMR-SRPHRVVHAAAS--TANSSDPFS-WSELPEELLREILIRVETVDGGDW 56

Query:    60 PSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ 119
             PSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ
Sbjct:    57 PSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQ 116

Query:   120 TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 179
             +YHLYL LT +L D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNFLGT
Sbjct:   117 SYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGT 176

Query:   180 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
             KF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGSR
Sbjct:   177 KFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGSR 226

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 150/239 (62%), Positives = 177/239 (74%)

Query:     1 MTIKSIIHDMMWRRSHRVVGD---AADHDMAGGSSPTCCWANLPQELLREILAKIEAADS 57
             MT++S+I +M   R HRVV D   AA  D    SS    W+ +P+ELLREIL ++EAAD 
Sbjct:     1 MTLRSLILEMR-SRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADG 59

Query:    58 A-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNR 116
               WPSRRSVVACAGVCR WR +  E V VPE+S  LTFPIS+KQPGPRD L+QCFIKRNR
Sbjct:    60 GGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNR 119

Query:   117 STQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 176
              TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIISL SDDMS+ S  Y+GK+RSNF
Sbjct:   120 ITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNF 179

Query:   177 LGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
             LGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+Y VAHI+YELNVLGSR
Sbjct:   180 LGTKFTVFDGNLLPSTGAAKLRKSRSY---NPAKVSAKVPLGSYPVAHITYELNVLGSR 235

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 118/202 (58%), Positives = 159/202 (78%)

Query:    37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPI 96
             WANLP ELLR+++ ++E ++S WP+RR VVACA VCRSWR + KEIV+ PELSG +TFP+
Sbjct:    57 WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPV 116

Query:    97 SVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIIS 155
             S+KQPGPRD  +QCFIKR++S  TYHLYL L+ AL  ++GKFLL+A++ RR T T+Y+IS
Sbjct:   117 SLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVIS 176

Query:   156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH----AGAKMTRSRSTRLANLKQVSP 211
             +H+D +S+ S+TY+GK+RSNFLGTKFI+YD QP +    A A      S R  + K+VSP
Sbjct:   177 MHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYS-KRVSP 235

Query:   212 RIPFGNYSVAHISYELNVLGSR 233
             ++P G+Y +A +SYELNVLG+R
Sbjct:   236 KVPSGSYKIAQVSYELNVLGTR 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 112/199 (56%), Positives = 162/199 (81%)

Query:    37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPI 96
             WANLP  LLR+++ K++ ++S WP+R+ VVACAGVC++WR + K+IVK PE SG LTFP+
Sbjct:    55 WANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPV 114

Query:    97 SVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIIS 155
             S+KQPGPRD ++QC+IKR++S  TYHLYLSL+ A L + GKFLL+A++ RRAT T+Y+IS
Sbjct:   115 SLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVIS 174

Query:   156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAK-MTRSRSTRLANLKQVSPRIP 214
             + +D++S+ SSTY+GKL+SNFLGTKFIVYD  P +  ++ ++    +R  N K+VSP++P
Sbjct:   175 MDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVP 234

Query:   215 FGNYSVAHISYELNVLGSR 233
              G+Y++A ++YELN+LG+R
Sbjct:   235 SGSYNIAQVTYELNLLGTR 253

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 113/204 (55%), Positives = 160/204 (78%)

Query:    34 TCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLT 93
             T  WANLP ELL +++ ++E ++S WP+R+ VVACA VCRSWR + +EIV  PE+ G LT
Sbjct:    56 TSRWANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLT 115

Query:    94 FPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDY 152
             FP+S+KQPGPRD ++QCFIKR++S  T+HL+L L+ AL  ++GKFLL+A++ RR T T+Y
Sbjct:   116 FPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEY 175

Query:   153 IISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPP---HAGAKMTRSRSTRLANLKQV 209
             IIS+ +D++S+ S++YLGKLRSNFLGTKF+VYD QPP    + A +T   S    + ++V
Sbjct:   176 IISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRV 235

Query:   210 SPRIPFGNYSVAHISYELNVLGSR 233
             SP++P G+Y++A I+YELNVLG+R
Sbjct:   236 SPKVPSGSYNIAQITYELNVLGTR 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 114/222 (51%), Positives = 157/222 (70%)

Query:    12 WRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGV 71
             W +S  +  D     +   + P   WA+LP ELL +I+ ++E +++AWP+R +VV+CA V
Sbjct:    25 WSKSSHIAPDQTTPPL--DNIPQSPWASLPPELLHDIIWRVEESETAWPARAAVVSCASV 82

Query:    72 CRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL 131
             C+SWR IT EIV++PE  G LTFPIS+KQPGPRD  +QCFIKRNR+T TY LY  L  + 
Sbjct:    83 CKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSE 142

Query:   132 ADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA 191
              ++ K LLAAR+ RRATCTD+IISL + + S+ SSTY+GKLRS FLGTKF +YD Q   +
Sbjct:   143 TENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQTASS 202

Query:   192 GAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
              A+   +R  RL + KQ +P++P  + +V +I+YELNVL +R
Sbjct:   203 TAQAQPNR--RL-HPKQAAPKLPTNSSTVGNITYELNVLRTR 241

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 107/208 (51%), Positives = 144/208 (69%)

Query:    26 DMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKV 85
             +MAG SS    W+ +  ELL EI+ ++E  +  WP RR VV CA V + WR+IT +  + 
Sbjct:    37 NMAGSSS----WSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARS 92

Query:    86 PELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCR 145
                SG +TFP  +K PGPRD+  QC IKRN+ T T++LYL+LT +  D GKFLLAAR+ R
Sbjct:    93 SLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFR 152

Query:   146 RATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLAN 205
                 T+YIISL +DD S+GS+ Y+GKLRS+FLGT F VYD QPPH GAK +  +++R   
Sbjct:   153 TGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFA 212

Query:   206 LKQVSPRIPFGNYSVAHISYELNVLGSR 233
              KQ+SP++P GN+ V H+SY+ N+L SR
Sbjct:   213 SKQISPQVPAGNFEVGHVSYKFNLLKSR 240

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 110/200 (55%), Positives = 143/200 (71%)

Query:    37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPI 96
             W +LP ELL +I+ +IE+  S WP RR VVACA VC+SWR++TKE+VKVPELSG +TFPI
Sbjct:    69 WVDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPI 128

Query:    97 SVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADD-GKFLLAARKCRRATCTDYIIS 155
             S++QPGPRD  +QCFIKR R+T  Y LYL L+ AL+ D  K LL+A++ RRAT  ++++S
Sbjct:   129 SLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVS 188

Query:   156 LHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
             L  +D S+ SS Y+GKLRSNFLGTKF VY+ QPP    K+  S         QVSP +  
Sbjct:   189 LSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPPSM--------QVSPWVSS 240

Query:   216 GN--YSVAHISYELNVLGSR 233
              +  Y++A I YELNVL +R
Sbjct:   241 SSSSYNIASILYELNVLRTR 260

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

MGI|MGI:1861600 Tulp2 "tubby-like protein 2" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 40/91 (43%), Positives = 59/91 (64%)

Query:   101 PGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYII 154
             P PRD+++QC I RN+         +Y+LYL   + +A    FLLA RK +R+  ++Y+I
Sbjct:   315 PAPRDHMVQCRIVRNKHGMDKGMFPSYYLYLEAEDGVAH---FLLAGRKRKRSKTSNYLI 371

Query:   155 SLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD 185
             SL   DMS+  S ++GK+RSN LGTKF ++D
Sbjct:   372 SLDPKDMSRNGSNFVGKVRSNVLGTKFTIFD 402

GO:0005576 "extracellular region" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 49/136 (36%), Positives = 74/136 (54%)

Query:   100 QPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGK--FLLAARKCRRATCTDYIISL 156
             +P P+   ++C I R++      +Y +    L  +DGK  FLLA RK +++  ++Y+IS+
Sbjct:   256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 315

Query:   157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
                D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q       
Sbjct:   316 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ------- 364

Query:   216 GNYSVAHISYELNVLG 231
                 +A + YE NVLG
Sbjct:   365 ---ELAAVCYETNVLG 377

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IMP

GO:0050766 "positive regulation of phagocytosis" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam01167	243	pfam01167, Tub, Tub family	2e-51
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-04
pfam00646	48	pfam00646, F-box, F-box domain	0.003

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  168 bits (427), Expect = 2e-51
 Identities = 54/136 (39%), Positives = 77/136 (56%), Gaps = 16/136 (11%)

Query: 101 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDG--KFLLAARKCRRATCTDYIISLH 157
           P PR   +QC I R++S   Y L+ +    L  ++G  KFLLAARK +R+  ++Y+ISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 158 SDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN 217
             D+S+    Y+GKLRSNFLGTKF V+D       A++             V+P++  G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 218 YSVAHISYELNVLGSR 233
             +A + YE NVLG R
Sbjct: 108 QELAAVCYETNVLGFR 123

Length = 243

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQIT 79
           ++LP E+L +I + ++  D        ++  A VCR WR++ 
Sbjct: 1  LSDLPDEILLQIFSYLDPRD--------LLRLALVCRRWRELA 35

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 8/44 (18%)

Query: 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80
            +LP +LL EIL+++          + ++  + V + WR +  
Sbjct: 3  LLDLPDDLLLEILSRL--------DPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.09
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	97.79
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.75
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.54
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	87.9

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=1e-74  Score=544.58  Aligned_cols=210  Identities=49%  Similarity=0.780  Sum_probs=192.2

Q ss_pred             CCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhhhcCcccccccccccccccCCCCCceEEEEEEe
Q 024270           35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR  114 (270)
Q Consensus        35 ~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~eiv~~pe~~gk~tFp~sLkqPgPr~~~iQCfI~R  114 (270)
                      +.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.++++|||++|+||||+|.++||+|+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeeeecccccccC--CCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeeeeeccccccEEEEecCCCCCCC
Q 024270          115 NRSTQTYHLYLSLTNALA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG  192 (270)
Q Consensus       115 dksg~tY~LYL~l~~~~~--d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGKLRSNflGTkFtIYD~g~p~~~  192 (270)
                      ||+|++|+||++|.+++.  |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.++  
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~--  200 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNP--  200 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCc--
Confidence            999999999999998753  7899999999999999999999999999999999999999999999999999997432  


Q ss_pred             CccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccccC---CCcchhhhhhhh
Q 024270          193 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQ---ESINYYRIFVNQ  260 (270)
Q Consensus       193 a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~~~---~~~~~~~~~~~~  260 (270)
                              +|+++      ++|.+++|||+|+||+||||+||||||+|+||.....   +.++..+.+.++
T Consensus       201 --------~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~~~~~v~~q~~~~~~  257 (355)
T KOG2502|consen  201 --------SRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSAPGGRVPVQPENDHP  257 (355)
T ss_pred             --------ccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCCCCCccccccccccc
Confidence                    22333      4789999999999999999999999999999964433   344665655555

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=1.4e-47  Score=347.87  Aligned_cols=137  Identities=46%  Similarity=0.710  Sum_probs=107.9

Q ss_pred             CCCCCceEEEEEEeecCCceeeeeccccccc-CCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeeeeecccccc
Q 024270          101 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT  179 (270)
Q Consensus       101 PgPr~~~iQCfI~Rdksg~tY~LYL~l~~~~-~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGKLRSNflGT  179 (270)
                      |||+|++|||+|+|||+|++|+||+.+...+ .++++|||||||+++++||||+|||+++|+||++++|||||||||+||
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT   80 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT   80 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence            8999999999999999998777777666644 489999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccccCCC
Q 024270          180 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQES  250 (270)
Q Consensus       180 kFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~~~~~  250 (270)
                      +|||||+|++++.+.             ..+|..+..|+|||+|+|++||||+||||||+|+||.......
T Consensus        81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~  138 (246)
T PF01167_consen   81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQ  138 (246)
T ss_dssp             EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-
T ss_pred             EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCcccc
Confidence            999999998776543             2256678899999999999999999999999999998666443

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.09  E-value=1.1e-06  Score=60.29  Aligned_cols=36  Identities=36%  Similarity=0.777  Sum_probs=30.6

Q ss_pred             CCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        37 Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      |..||+|+|.+|+..++.        +|+..|+.|||.|+.++.
T Consensus         1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence            789999999999999943        379999999999999884

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=97.79  E-value=1e-05  Score=78.69  Aligned_cols=40  Identities=33%  Similarity=0.658  Sum_probs=37.4

Q ss_pred             CCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270           35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE   81 (270)
Q Consensus        35 ~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e   81 (270)
                      ..|+.||+|||+.|..||       |++-|++-.++||++||..+..
T Consensus         2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence            469999999999999999       9999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.75  E-value=4.2e-06  Score=56.88  Aligned_cols=39  Identities=26%  Similarity=0.579  Sum_probs=31.6

Q ss_pred             CCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhh
Q 024270           36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI   82 (270)
Q Consensus        36 ~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ei   82 (270)
                      .|.+||+|++.+|+.+++.        +++++|+.||+.|+.+++..
T Consensus         2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence            5889999999999999955        45999999999999988654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.54  E-value=1.8e-05  Score=51.30  Aligned_cols=33  Identities=39%  Similarity=0.836  Sum_probs=29.9

Q ss_pred             CCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           40 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        40 lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      ||+|++.+|+.+|       +. +|+.+|+.||++|+.++.
T Consensus         1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhc
Confidence            7999999999999       54 789999999999999874

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.60  E-value=0.11  Score=50.63  Aligned_cols=97  Identities=23%  Similarity=0.317  Sum_probs=60.5

Q ss_pred             CCCCCC---CCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhh-------hcCccccccccc---------
Q 024270           34 TCCWAN---LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI-------VKVPELSGYLTF---------   94 (270)
Q Consensus        34 ~~~Wa~---lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ei-------v~~pe~~gk~tF---------   94 (270)
                      |+.|-+   ||+|+|-.||+++-.+.   =.-++...||+||+.|+-.+.+=       ++-++.++..-=         
T Consensus       101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~  177 (366)
T KOG2997|consen  101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY  177 (366)
T ss_pred             chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence            677765   99999999999995322   13357789999999877655210       122222222111         


Q ss_pred             ----ccccccCCCC-CceEEEEEEeec---CCc-------------eeeeecccccccCCCCeEEEE
Q 024270           95 ----PISVKQPGPR-DYLLQCFIKRNR---STQ-------------TYHLYLSLTNALADDGKFLLA  140 (270)
Q Consensus        95 ----p~sLkqPgPr-~~~iQCfI~Rdk---sg~-------------tY~LYL~l~~~~~d~gkFLLA  140 (270)
                          -++|.+|--+ ||   |+|-++.   -|.             +||=|+-+    -.+|++|+-
T Consensus       178 ~SWR~Mfl~RpRvrFdG---~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRF----yP~G~~l~~  237 (366)
T KOG2997|consen  178 TSWREMFLERPRVRFDG---VYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRF----YPDGHVLML  237 (366)
T ss_pred             hHHHHHHhhCcceeecc---eEEEEEeEeecCchhhhhhcCcceeeEEEEEEEe----cCCCcEEEE
Confidence                1247777654 45   7777662   221             79988863    478888763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=87.90  E-value=0.15  Score=49.77  Aligned_cols=68  Identities=19%  Similarity=0.454  Sum_probs=52.6

Q ss_pred             CCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhh--hcCcccccccccccccccCCCCCc-eEEEE
Q 024270           36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI--VKVPELSGYLTFPISVKQPGPRDY-LLQCF  111 (270)
Q Consensus        36 ~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ei--v~~pe~~gk~tFp~sLkqPgPr~~-~iQCf  111 (270)
                      .|.+||.|+|.+||.-|        ..++....++||++|..++.+-  -...+..|+--.|.+|-+=.-|+. .++|-
T Consensus        97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla  167 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA  167 (419)
T ss_pred             CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence            39999999999999877        5678999999999999988542  224566777778887777777773 34553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		6e-15
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		7e-15
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		7e-15
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		7e-15
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		7e-15

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
           +P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  ++
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 78
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
           Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q  
Sbjct: 79  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 132
Query: 211 PRIPFGNYSVAHISYELNVLG 231
                    +A + YE NVLG
Sbjct: 133 --------ELAAVCYETNVLG 145

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
           V +P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64
Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
              ++S+G   ++GKLRSN LG +F V+D GQ P  G       ST +A+L+Q       
Sbjct: 65  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ------- 111
Query: 216 GNYSVAHISYELNVLGSR 233
               +A + YE NVLG R
Sbjct: 112 ---ELAAVIYETNVLGFR 126

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
           V +P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88
Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
              ++S+G   ++GKLRSN LG +F V+D GQ P       R  ST +A+L+Q       
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ------RGYSTNVASLRQ------- 135
Query: 216 GNYSVAHISYELNVLGSR 233
               +A + YE NVLG R
Sbjct: 136 ---ELAAVIYETNVLGFR 150

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
           +P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  ++
Sbjct: 16  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
           Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q  
Sbjct: 71  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 124
Query: 211 PRIPFGNYSVAHISYELNVLG 231
                    +A + YE NVLG
Sbjct: 125 --------ELAAVCYETNVLG 137

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
           +P P+   ++C I R++         TY L+L       +DGK  FLLA RK +++  ++
Sbjct: 16  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
           Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q  
Sbjct: 71  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 124
Query: 211 PRIPFGNYSVAHISYELNVLG 231
                    +A + YE NVLG
Sbjct: 125 --------ELAAVCYETNVLG 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	5e-39
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	1e-37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	7e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	7e-04

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  135 bits (341), Expect = 5e-39
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 16/137 (11%)

Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
           V +P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64

Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 216
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 65  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 109

Query: 217 NYSVAHISYELNVLGSR 233
              +A + YE NVLG R
Sbjct: 110 RQELAAVIYETNVLGFR 126

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  132 bits (333), Expect = 1e-37
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 16/137 (11%)

Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
           V +P P+   ++C + R++      +Y S    L  + K FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 216
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 217 NYSVAHISYELNVLGSR 233
              +A + YE NVLG R
Sbjct: 134 RQELAAVIYETNVLGFR 150

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 31  SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQI--TKEIVKVPEL 88
           + P   W +LP ELL  I + +            ++  +GVC+ W ++   + + +  +L
Sbjct: 3   NFPGVSWDSLPDELLLGIFSCL--------CLPELLKVSGVCKRWYRLASDESLWQTLDL 54

Query: 89  SGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYH-------LYLSLTNALADDGKFLLAA 141
           +G    P    +   +  +     +                 ++ L+N++ +        
Sbjct: 55  TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114

Query: 142 RKCRRATCTDYIISLHSDDMSKGSSTYLGKLRS 174
            +C +       +SL    +S      L K  +
Sbjct: 115 SQCSKLQN----LSLEGLRLSDPIVNTLAKNSN 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 49/260 (18%), Positives = 80/260 (30%), Gaps = 71/260 (27%)

Query: 42  QELLREILAKIEAAD---SAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGY--LTFPI 96
           Q++ + IL+K E      S      ++     +     ++ ++ V+      Y  L  PI
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 97  SV--KQPGP--------RDYLL---QCFIKRNRSTQTYHLYLSLTNALADD--------- 134
               +QP          RD L    Q F K N S      YL L  AL +          
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAKNVLID 156

Query: 135 -----GKFLLAARKCRRATCTDYIISLHSDD----MSKGSSTYLGKLRSNFLGTKFIVYD 185
                GK  +A   C       Y +    D     ++      L    S           
Sbjct: 157 GVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLN------LKNCNS----------- 194

Query: 186 GQPPHAGAKMTRSRSTRLA-NLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLL 244
              P    +M +    ++  N    S         +  I  EL  L     ++ C LL+L
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVL 250

Query: 245 R--CNQESINYY----RIFV 258
               N ++ N +    +I +
Sbjct: 251 LNVQNAKAWNAFNLSCKILL 270

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 31 SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80
          + P   W +LP ELL  I +              ++  +GVC+ W ++  
Sbjct: 3  NFPGVSWDSLPDELLLGIFS--------CLCLPELLKVSGVCKRWYRLAS 44

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81
               A LP+ LL  +LA++       P+   V AC  VC  W+++   
Sbjct: 47 AVEYLAELPEPLLLRVLAEL-------PATELVQACRLVCLRWKELVDG 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.47
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.2
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.29
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.08
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.72

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=2e-47  Score=346.19  Aligned_cols=129  Identities=31%  Similarity=0.548  Sum_probs=107.0

Q ss_pred             cccCCCCCceEEEEEEeecCCc------eeeeecccccccCCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeee
Q 024270           98 VKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK  171 (270)
Q Consensus        98 LkqPgPr~~~iQCfI~Rdksg~------tY~LYL~l~~~~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGK  171 (270)
                      |+||+|+|++|||+|+|||+|+      +||||++     .++++|||||||+++++||||+||+|++||||++++||||
T Consensus         5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK   79 (246)
T 3c5n_A            5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK   79 (246)
T ss_dssp             GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred             cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence            9999999999999999999984      8999996     4667899999999999999999999999999999999999


Q ss_pred             eeccccccEEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccc
Q 024270          172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRC  246 (270)
Q Consensus       172 LRSNflGTkFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~  246 (270)
                      |||||+||+|+|||+|++++.+               .+|+++++|+|||+|.||+|+||++|||+|+|+||...
T Consensus        80 LrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~  139 (246)
T 3c5n_A           80 LRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS  139 (246)
T ss_dssp             EEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC
T ss_pred             EEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc
Confidence            9999999999999999765322               34566788999999999999999999999999999764

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=1.1e-46  Score=346.49  Aligned_cols=129  Identities=31%  Similarity=0.548  Sum_probs=101.5

Q ss_pred             cccCCCCCceEEEEEEeecCCc------eeeeecccccccCCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeee
Q 024270           98 VKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK  171 (270)
Q Consensus        98 LkqPgPr~~~iQCfI~Rdksg~------tY~LYL~l~~~~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGK  171 (270)
                      |+||+|+|+++||+|+|||+|+      +||||++     .++++|||||||+++++|+||+||+|++||||++++||||
T Consensus        29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK  103 (276)
T 2fim_A           29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK  103 (276)
T ss_dssp             GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred             hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence            9999999999999999999984      8999995     5788999999999999999999999999999999999999


Q ss_pred             eeccccccEEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccc
Q 024270          172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRC  246 (270)
Q Consensus       172 LRSNflGTkFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~  246 (270)
                      |||||+||+|+|||+|.+++.+               .+|+++.+|+|||+|.||+|+||++|||+|+|+||...
T Consensus       104 LrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~  163 (276)
T 2fim_A          104 LRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS  163 (276)
T ss_dssp             EEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEECBC
T ss_pred             EEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc
Confidence            9999999999999999755322               34566788999999999999999999999999999764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.37  E-value=9.5e-08  Score=65.69  Aligned_cols=40  Identities=30%  Similarity=0.744  Sum_probs=33.0

Q ss_pred             CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      +...|+.||+|+|..||.+|       | .++++.|+.|||+|+.++.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence            34679999999999999999       4 4689999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.47  E-value=3e-05  Score=67.85  Aligned_cols=40  Identities=30%  Similarity=0.745  Sum_probs=34.1

Q ss_pred             CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      ++..|++||+|+|..||.+|       +.+ ++++|+.||++|++++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred             ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence            46789999999999999999       443 78999999999999873

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.24  E-value=9.3e-05  Score=68.53  Aligned_cols=39  Identities=36%  Similarity=0.759  Sum_probs=34.3

Q ss_pred             CCCCCCCCHHHHHHHHHhhhhccCCCCCcccee-eecccchhHHHHHH
Q 024270           34 TCCWANLPQELLREILAKIEAADSAWPSRRSVV-ACAGVCRSWRQITK   80 (270)
Q Consensus        34 ~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vv-aca~VCr~WR~i~~   80 (270)
                      ......||+|||.+||.||       |. ++++ .|+.|||+||.++.
T Consensus        48 ~~~~~~LP~ell~~Il~~L-------p~-~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAEL-------PA-TELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTS-------CH-HHHHHTGGGTCHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHhHHHHHHhc
Confidence            4568899999999999999       76 4688 99999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.20  E-value=7.5e-05  Score=70.09  Aligned_cols=41  Identities=22%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      +...|+.||+|+|..||.+|       |..+++++|+.||++|+.+..
T Consensus         2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~   42 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIER   42 (594)
T ss_dssp             --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhh
Confidence            34689999999999999999       877899999999999999843

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.29  E-value=0.0015  Score=58.69  Aligned_cols=41  Identities=27%  Similarity=0.476  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           32 SPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        32 ~~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      ....-++.||+||+..||..|+        .+++..||.||+.|+.++.
T Consensus        14 ~~~d~~~~lp~e~~~~i~~~l~--------~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           14 FQRDFISLLPKELALYVLSFLE--------PKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSC--------HHHHHHHTTSCHHHHHHHT
T ss_pred             ccCChhHHCCHHHHHHHHHhCC--------HHHHHHHHHHhHHHHhhcC
Confidence            4456689999999999999993        3679999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.08  E-value=0.00082  Score=60.21  Aligned_cols=42  Identities=19%  Similarity=0.392  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270           32 SPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE   81 (270)
Q Consensus        32 ~~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e   81 (270)
                      .+..-++.||+|+|..||..|       |. ++++.|+.||+.|+.++.+
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred             cccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence            455668899999999999999       43 4789999999999998754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.38  E-value=0.0021  Score=60.16  Aligned_cols=38  Identities=13%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             CCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270           36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE   81 (270)
Q Consensus        36 ~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e   81 (270)
                      .|.+||.|++..|+..|+.        +|+..||.|||.||.++.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred             hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence            4778999999999999943        5699999999999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.00  E-value=0.0051  Score=57.77  Aligned_cols=37  Identities=16%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             CCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        37 Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      .+.||+|+|..|+.+|       +..++.++|+-|||+|+.+..
T Consensus        13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence            4589999999999999       567889999999999999854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.72  E-value=0.0038  Score=56.14  Aligned_cols=42  Identities=26%  Similarity=0.532  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCHH----HHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270           32 SPTCCWANLPQE----LLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE   81 (270)
Q Consensus        32 ~~~~~Wa~lppe----ll~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e   81 (270)
                      .+..-.+.||+|    ||..||..|+.        +++..|+.|||.|+.++.+
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence            445567789999    99999999943        5788999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	3e-42
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-04

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  143 bits (362), Expect = 3e-42
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 83  VKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA---DDGKFLL 139
           ++V +L  +        +P P+   ++C I R++      ++ +    L        FLL
Sbjct: 5   IEVQDLEEFAL------RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLL 58

Query: 140 AARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSR 199
           A RK +++  ++Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD       A      
Sbjct: 59  AGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKA------ 112

Query: 200 STRLANLKQVSPRIPFGNYSVAHISYELNVLGSR 233
                     +         +A + YE NVLG +
Sbjct: 113 -------SSSTLESGTLRQELAAVCYETNVLGFK 139

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 8/44 (18%)

Query: 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80
          W +LP ELL  I + +            ++  +GVC+ W ++  
Sbjct: 1  WDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLAS 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.59
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.41
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.37

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-46  Score=338.31  Aligned_cols=137  Identities=32%  Similarity=0.506  Sum_probs=117.5

Q ss_pred             ccccccccccCCCCCceEEEEEEeecCCc------eeeeecccccccCCCCeEEEEEEecCCCCCceEEEEcCCCCCCCC
Q 024270           91 YLTFPISVKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKG  164 (270)
Q Consensus        91 k~tFp~sLkqPgPr~~~iQCfI~Rdksg~------tY~LYL~l~~~~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~  164 (270)
                      ...|   |.||+|+|++|||+|+|||+|+      +|+|||+.   ..++++|||||||+++++++||+||+|++|+||+
T Consensus        10 ~~~F---l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~---~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~   83 (265)
T d1c8za_          10 LEEF---ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDR---EDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRG   83 (265)
T ss_dssp             HHHH---HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEEC---TTSCEEEEEEEEEEESSSSEEEEEESCHHHHTTT
T ss_pred             HHHH---hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEcc---CCCceeEEEEEeeecCCCcceEEEEccHHHhccc
Confidence            3456   9999999999999999999986      57777752   2334569999999999999999999999999999


Q ss_pred             CCceeeeeeccccccEEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeec
Q 024270          165 SSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLL  244 (270)
Q Consensus       165 S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~  244 (270)
                      |++|||||||||+||+|+|||+|.+++.++..             ++...+.|+|||+|.||+|+||+||||+|+|+||.
T Consensus        84 s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~  150 (265)
T d1c8za_          84 GDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPG  150 (265)
T ss_dssp             CCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEEC
T ss_pred             ccceeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecC
Confidence            99999999999999999999999877654321             12234568999999999999999999999999996


Q ss_pred             cc
Q 024270          245 RC  246 (270)
Q Consensus       245 ~~  246 (270)
                      ..
T Consensus       151 ~~  152 (265)
T d1c8za_         151 MN  152 (265)
T ss_dssp             BC
T ss_pred             CC
Confidence            53

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.8e-08  Score=62.71  Aligned_cols=36  Identities=31%  Similarity=0.766  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        37 Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      |..||.|++..|+.+|       | .+|++.|+.|||+|++++.
T Consensus         1 f~~LP~eil~~If~~L-------~-~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence            8899999999999999       4 3579999999999999874

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.1e-05  Score=59.56  Aligned_cols=42  Identities=26%  Similarity=0.476  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           31 SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        31 ~~~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      ..+.+--+.||+|++..|+..|+.        +|+++||.||+.|++++.
T Consensus        13 ~~~~D~i~~LP~Eil~~Ils~Ld~--------~dL~~~~~vcr~w~~l~~   54 (102)
T d2ovrb1          13 QFQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE   54 (102)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred             hhccCChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHC
Confidence            345556788999999999999944        589999999999999884

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=9.8e-06  Score=60.43  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=32.5

Q ss_pred             CCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270           35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK   80 (270)
Q Consensus        35 ~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~   80 (270)
                      +-.+.||+||+..|+..|       +. +++++|+.||++|+.++.
T Consensus         4 D~~~~LP~Ell~~I~s~L-------d~-~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTS-------CH-HHHHHHTTTCHHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCC-------CH-HHHHHHHHHHHHHHHHHH
Confidence            346789999999999999       33 589999999999999763

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00033  Score=53.06  Aligned_cols=42  Identities=26%  Similarity=0.540  Sum_probs=33.5

Q ss_pred             CCCCCCCCCC----HHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270           32 SPTCCWANLP----QELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE   81 (270)
Q Consensus        32 ~~~~~Wa~lp----pell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e   81 (270)
                      .+.+-=++||    +|++..||..|+.        +|+..||.||+.|++++.+
T Consensus         6 l~~D~i~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1           6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             HcccHHHHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence            3444455677    5999999999954        5799999999999999853