Citrus Sinensis ID: 024284

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHSKISGPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFSLFFFFWNDLFPVSLFAWIPKDPRN
cccEEEEccccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccc
ccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcccEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEHHHHccccccHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccc
matnigmmdsayfVGRNELLTWINNRLQLHLSRIEEAASgavqcqmldmtypgvvpmhkvnfdaKTEYDMIQNYKVLQDVFNKLKIEKHIEVnklvkgrpldnlEFLQWLKRYCDsvnggimnenynpverrckggkerssrgsqkISKSLqtnnmhnagsgdighskisgprqakiygansAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEIlcqtpelenlpvrISGLLILIILHFSLFfffwndlfpvslfawipkdprn
matnigmmdsAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIevnklvkgrpldnLEFLQWLKRYCDSVnggimnenynpverrckggkerssrgsqKISKSLQTNNMHNAGSGDIGHSKISGPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFSLFFFFWNDLFPVSLfawipkdprn
MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHSKISGPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGlliliilhfslffffwndlfPVSLFAWIPKDPRN
******MMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENY**************************************************************LSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFSLFFFFWNDLFPVSLFAWI******
*ATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIM*********************************************************************EITDLKLSVDLLEKERDFYFAKLRDIEILCQ**********ISGLLILIILHFSLFFFFWNDLFPVSLFA********
MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR****************KSLQTNNMHNAGSGDIGHSKISGPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFSLFFFFWNDLFPVSLFAWIPKDPRN
**T**GMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYN*VERRC**************************************************QEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFSLFFFFWNDLFPVSLFAWIPKD***
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MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHSKISGPRQAKIYGANSAQExxxxxxxxxxxxxxxxxxxxxRDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFSLFFFFWNDLFPVSLFAWIPKDPRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query269 2.2.26 [Sep-21-2011]
Q7XJ60276 Microtubule-associated pr yes no 0.866 0.844 0.770 1e-106
Q9FJJ5293 Microtubule-associated pr no no 0.881 0.808 0.753 1e-105
Q9FGQ6329 Microtubule-associated pr no no 0.821 0.671 0.570 1e-78
Q9UPY8281 Microtubule-associated pr yes no 0.828 0.793 0.391 6e-41
Q5XIT1281 Microtubule-associated pr yes no 0.828 0.793 0.391 1e-40
Q6PER3281 Microtubule-associated pr yes no 0.828 0.793 0.391 1e-40
Q5R7Z5268 Microtubule-associated pr no no 0.810 0.813 0.399 7e-39
Q15691268 Microtubule-associated pr no no 0.810 0.813 0.399 9e-39
Q3ZBD9268 Microtubule-associated pr no no 0.788 0.791 0.385 2e-38
Q66T82263 Microtubule-associated pr N/A no 0.765 0.783 0.398 2e-38
>sp|Q7XJ60|EB1A_ARATH Microtubule-associated protein RP/EB family member 1A OS=Arabidopsis thaliana GN=EB1A PE=1 SV=1 Back     alignment and function desciption
 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/240 (77%), Positives = 208/240 (86%), Gaps = 7/240 (2%)

Query: 1   MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKV 60
           MATNIGMMDSAYFVGRNE+LTWIN+RL L+LSR+EEAASGAVQCQMLDMT+PGVVPMHKV
Sbjct: 1   MATNIGMMDSAYFVGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 120
           NFDAK EYDMIQNYKVLQDVFNKLKI K +E+N+LVKGRPLDNLEFLQWLKR+CDS+NGG
Sbjct: 61  NFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDNLEFLQWLKRFCDSINGG 120

Query: 121 IMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMH-NAGSGDIGHSKISGPRQAKIYG 179
           IMNENYNPVERR + GKERS +GS KI KSLQTNN H    S  +G SK SGP+ AK   
Sbjct: 121 IMNENYNPVERRSRNGKERSVKGSNKIPKSLQTNNNHPPPNSSSVGLSKASGPKSAK--- 177

Query: 180 ANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLIL 239
              A EVQALSKE+ DLK+S DLLEKERDFYF+KLRD+EILCQTPEL++LP+ ++   IL
Sbjct: 178 ---AAEVQALSKELVDLKISTDLLEKERDFYFSKLRDVEILCQTPELDDLPIVVAVKKIL 234
Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. May be involved in anchoring microtubules to their nucleation sites and/or functioning as a reservoir for distribution to the growing end. In plants, microtubule minus ends are not necessarily severed from the nucleation site and transported to the plus end of a microtubule as part of the recycling process. May play a role in endomembrane organization during polarized growth of plant cells. Interacts with the tobamovirus movement protein (MP) and may play a role in the association of MP with the microtubule system during infection.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FJJ5|EB1B_ARATH Microtubule-associated protein RP/EB family member 1B OS=Arabidopsis thaliana GN=EB1B PE=1 SV=1 Back     alignment and function description
>sp|Q9FGQ6|EB1C_ARATH Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana GN=EB1C PE=1 SV=1 Back     alignment and function description
>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1 Back     alignment and function description
>sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1 Back     alignment and function description
>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7Z5|MARE1_PONAB Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3 Back     alignment and function description
>sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3 Back     alignment and function description
>sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB family member 1 OS=Bos taurus GN=MAPRE1 PE=2 SV=3 Back     alignment and function description
>sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix japonica GN=MAPRE1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
224124070274 predicted protein [Populus trichocarpa] 0.866 0.850 0.824 1e-113
118482183276 unknown [Populus trichocarpa] 0.869 0.847 0.807 1e-112
224121516272 predicted protein [Populus trichocarpa] 0.869 0.860 0.817 1e-112
449439257272 PREDICTED: microtubule-associated protei 0.888 0.878 0.787 1e-107
297815952275 ATEB1A [Arabidopsis lyrata subsp. lyrata 0.866 0.847 0.770 1e-104
42565696276 microtubule end binding protein EB1A [Ar 0.866 0.844 0.770 1e-104
15241860293 microtubule-associated protein, RP/EB fa 0.881 0.808 0.753 1e-104
297793827288 ATEB1B [Arabidopsis lyrata subsp. lyrata 0.862 0.805 0.756 1e-104
356508572287 PREDICTED: microtubule-associated protei 0.858 0.804 0.763 1e-103
356516784286 PREDICTED: microtubule-associated protei 0.858 0.807 0.762 1e-103
>gi|224124070|ref|XP_002330097.1| predicted protein [Populus trichocarpa] gi|222871231|gb|EEF08362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/234 (82%), Positives = 218/234 (93%), Gaps = 1/234 (0%)

Query: 1   MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKV 60
           MA+NIGMMDSAYFVGRNE+LTWINNRLQL+LSRIEEAASGAVQCQM+DMTYPGVVPMHKV
Sbjct: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 120
           NFDAKTEYDMIQNYK+LQD+FNKLKIEKH+EVN+LVKGRPLDNLEFLQWLKRYCDSVNGG
Sbjct: 61  NFDAKTEYDMIQNYKILQDIFNKLKIEKHLEVNRLVKGRPLDNLEFLQWLKRYCDSVNGG 120

Query: 121 IMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNAGSG-DIGHSKISGPRQAKIYG 179
           IMNENYNP+ERR KGG++R+SRGSQK +KS Q +NMHN+ SG  +  +K+SG   A +  
Sbjct: 121 IMNENYNPLERRSKGGRDRNSRGSQKTTKSQQASNMHNSSSGYTVDLNKMSGRGSAVVGE 180

Query: 180 ANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRI 233
           ANS++E+QALSKEI D+KLSVDLLEKERDFYFAKLRDIEILCQTPELE+LPVR+
Sbjct: 181 ANSSEEIQALSKEIADMKLSVDLLEKERDFYFAKLRDIEILCQTPELEDLPVRV 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118482183|gb|ABK93021.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121516|ref|XP_002318604.1| predicted protein [Populus trichocarpa] gi|222859277|gb|EEE96824.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449439257|ref|XP_004137403.1| PREDICTED: microtubule-associated protein RP/EB family member 1B-like [Cucumis sativus] gi|449531603|ref|XP_004172775.1| PREDICTED: microtubule-associated protein RP/EB family member 1B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297815952|ref|XP_002875859.1| ATEB1A [Arabidopsis lyrata subsp. lyrata] gi|297321697|gb|EFH52118.1| ATEB1A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42565696|ref|NP_190353.3| microtubule end binding protein EB1A [Arabidopsis thaliana] gi|75232671|sp|Q7XJ60.1|EB1A_ARATH RecName: Full=Microtubule-associated protein RP/EB family member 1A; AltName: Full=APC-binding protein EB1A; AltName: Full=End-binding protein 1A; Short=AtEB1A; AltName: Full=Protein ATEB1 homolog 2; Short=AtEB1H2 gi|32815913|gb|AAP88341.1| At3g47690 [Arabidopsis thaliana] gi|110735727|dbj|BAE99843.1| hypothetical protein [Arabidopsis thaliana] gi|332644798|gb|AEE78319.1| microtubule end binding protein EB1A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15241860|ref|NP_201056.1| microtubule-associated protein, RP/EB family [Arabidopsis thaliana] gi|75262556|sp|Q9FJJ5.1|EB1B_ARATH RecName: Full=Microtubule-associated protein RP/EB family member 1B; AltName: Full=APC-binding protein EB1B; AltName: Full=End-binding protein 1; Short=AtEB1; AltName: Full=End-binding protein 1B; Short=AtEB1B; AltName: Full=Protein ATEB1 homolog 2; Short=ATEB1H2 gi|10178081|dbj|BAB11500.1| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] gi|21536831|gb|AAM61163.1| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] gi|332010232|gb|AED97615.1| microtubule-associated protein, RP/EB family [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793827|ref|XP_002864798.1| ATEB1B [Arabidopsis lyrata subsp. lyrata] gi|297310633|gb|EFH41057.1| ATEB1B [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356508572|ref|XP_003523029.1| PREDICTED: microtubule-associated protein RP/EB family member 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356516784|ref|XP_003527073.1| PREDICTED: microtubule-associated protein RP/EB family member 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
TAIR|locus:2100417276 EB1a "microtubule end binding 0.847 0.826 0.778 5.9e-96
TAIR|locus:2154149293 EB1B "end binding protein 1B" 0.862 0.791 0.760 2.6e-95
TAIR|locus:2157177329 EB1C "end binding protein 1C" 0.851 0.696 0.592 6.7e-72
UNIPROTKB|Q0VC55266 MAPRE3 "Uncharacterized protei 0.851 0.860 0.402 2e-40
UNIPROTKB|Q9UPY8281 MAPRE3 "Microtubule-associated 0.858 0.822 0.389 4.8e-39
UNIPROTKB|E2RDE0281 MAPRE3 "Uncharacterized protei 0.858 0.822 0.389 6.1e-39
MGI|MGI:2140967281 Mapre3 "microtubule-associated 0.858 0.822 0.389 6.1e-39
RGD|1359297281 Mapre3 "microtubule-associated 0.858 0.822 0.389 6.1e-39
UNIPROTKB|I3LQA8281 MAPRE3 "Uncharacterized protei 0.855 0.818 0.384 3.4e-38
ZFIN|ZDB-GENE-050913-88259 mapre3a "microtubule-associate 0.780 0.810 0.392 5.5e-38
TAIR|locus:2100417 EB1a "microtubule end binding protein EB1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 183/235 (77%), Positives = 206/235 (87%)

Query:     1 MATNIGMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKV 60
             MATNIGMMDSAYFVGRNE+LTWIN+RL L+LSR+EEAASGAVQCQMLDMT+PGVVPMHKV
Sbjct:     1 MATNIGMMDSAYFVGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKV 60

Query:    61 NFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 120
             NFDAK EYDMIQNYKVLQDVFNKLKI K +E+N+LVKGRPLDNLEFLQWLKR+CDS+NGG
Sbjct:    61 NFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDNLEFLQWLKRFCDSINGG 120

Query:   121 IMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNA-GSGDIGHSKISGPRQAKIYG 179
             IMNENYNPVERR + GKERS +GS KI KSLQTNN H    S  +G SK SGP+ AK   
Sbjct:   121 IMNENYNPVERRSRNGKERSVKGSNKIPKSLQTNNNHPPPNSSSVGLSKASGPKSAK--- 177

Query:   180 ANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRIS 234
                A EVQALSKE+ DLK+S DLLEKERDFYF+KLRD+EILCQTPEL++LP+ ++
Sbjct:   178 ---AAEVQALSKELVDLKISTDLLEKERDFYFSKLRDVEILCQTPELDDLPIVVA 229
GO:0005737 "cytoplasm" evidence=ISM
GO:0008017 "microtubule binding" evidence=IEA;ISS;IDA
GO:0005815 "microtubule organizing center" evidence=IDA
GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA
GO:0005876 "spindle microtubule" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0009574 "preprophase band" evidence=IDA
GO:0009652 "thigmotropism" evidence=IMP
TAIR|locus:2154149 EB1B "end binding protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157177 EB1C "end binding protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VC55 MAPRE3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UPY8 MAPRE3 "Microtubule-associated protein RP/EB family member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDE0 MAPRE3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2140967 Mapre3 "microtubule-associated protein, RP/EB family, member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359297 Mapre3 "microtubule-associated protein, RP/EB family, member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQA8 MAPRE3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-88 mapre3a "microtubule-associated protein, RP/EB family, member 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XJ60EB1A_ARATHNo assigned EC number0.77080.86610.8442yesno
Q9FJJ5EB1B_ARATHNo assigned EC number0.75300.88100.8088nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
COG5217342 COG5217, BIM1, Microtubule-binding protein involve 6e-33
pfam0327143 pfam03271, EB1, EB1-like C-terminal motif 5e-10
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 8e-10
>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  122 bits (308), Expect = 6e-33
 Identities = 72/237 (30%), Positives = 106/237 (44%), Gaps = 22/237 (9%)

Query: 8   MDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTE 67
            D A    R ELL W N  ++L L RIE+   G    Q+ D  Y   +P   V F    E
Sbjct: 1   CDKALVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHDSIY-VDLPDSLVRFPWIAE 59

Query: 68  YDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYN 127
           Y    N K+LQ +F+   I+K + V  LV+ +  DNLEFLQWLK +     G I   +Y+
Sbjct: 60  YKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVRNLGHI---SYD 116

Query: 128 PVERRCKGGKERSSRGSQKISKSLQ--TNNMHNAGSG------------DIGHSKISGP- 172
              RR  G   +S+R   +  +SL    + +     G                + +    
Sbjct: 117 RNARR-LGRTPKSTRELIEWIRSLGIPISAIRELSKGVASCKSLSTIHSSFPQNFVKNTA 175

Query: 173 -RQAKIYGANSAQE-VQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELE 227
                +    + QE + +L+ ++     ++  LE ER FYF KLR IEIL +T + E
Sbjct: 176 GTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEILVETLKRE 232

Length = 342
>gnl|CDD|202587 pfam03271, EB1, EB1-like C-terminal motif Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 269
KOG3000295 consensus Microtubule-binding protein involved in 100.0
COG5217342 BIM1 Microtubule-binding protein involved in cell 100.0
PF0327143 EB1: EB1-like C-terminal motif; InterPro: IPR00495 99.79
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.42
cd00014107 CH Calponin homology domain; actin-binding domain 99.34
smart00033103 CH Calponin homology domain. Actin binding domains 99.03
COG5217342 BIM1 Microtubule-binding protein involved in cell 97.99
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 97.44
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 97.37
KOG2046193 consensus Calponin [Cytoskeleton] 94.42
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 89.07
KOG0046627 consensus Ca2+-binding actin-bundling protein (fim 88.62
PF1141484 Suppressor_APC: Adenomatous polyposis coli tumour 85.69
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 82.78
KOG0046 627 consensus Ca2+-binding actin-bundling protein (fim 82.76
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-74  Score=531.47  Aligned_cols=242  Identities=43%  Similarity=0.651  Sum_probs=195.4

Q ss_pred             CCccccccc-CCCccCHHHHHHHhHhhhcCCcchhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHH
Q 024284            1 MATNIGMMD-SAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQD   79 (269)
Q Consensus         1 m~~~~gmm~-~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~   79 (269)
                      ||.+|++|+ +..++||+|+|+|+|++|++|++||||||+|||||||||++|||+|||+||||+|+.||||++|||+||.
T Consensus         1 ~a~nv~~~~~s~~~~sR~E~laW~N~~l~~n~~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~   80 (295)
T KOG3000|consen    1 MAVNVYATVVSTENESRLEILAWINDLLQLNLTKIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQT   80 (295)
T ss_pred             CceeeeeecccccccchHHHHHHHHhhhhcchhhhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHH
Confidence            889999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCCC--CCCC---CCCCc--ccc
Q 024284           80 VFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERS--SRGS---QKISK--SLQ  152 (269)
Q Consensus        80 af~k~~I~k~ipV~kLiKgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~~~~~~--~~~~---~~~~~--s~~  152 (269)
                      +|+++||+|+|||++|+||+|||||||+||||+|||+||+|   .+|||++||.+.|.+..  ..++   +.|..  +.+
T Consensus        81 ~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g---~~yd~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~  157 (295)
T KOG3000|consen   81 CFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGG---KGYDALARREGIGIGRSAISEGSKGVSAPKILSPVS  157 (295)
T ss_pred             HHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCc---cccCHHHHhhcccccccCcccccccccccccccccc
Confidence            99999999999999999999999999999999999999997   69999999965432221  1111   11111  000


Q ss_pred             cCCCCC-CCCCCCCCCCCCCCccc---c-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcC
Q 024284          153 TNNMHN-AGSGDIGHSKISGPRQA---K-----IYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQT  223 (269)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~s~p~~~---~-----~~~~~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~  223 (269)
                      ++.+.. ++.+.+...+.+.|+..   +     .+.....+++.+|.+|+.+++.++++||+||||||+|||+||||||+
T Consensus       158 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~~l~~~~~~~~~le~ERdfyf~kLr~iEil~q~  237 (295)
T KOG3000|consen  158 SAAPQNFVPARTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQQLTELKTTIASLEKERDFYFSKLRDIEILCQT  237 (295)
T ss_pred             ccCcccCCCccCcccccCCCCCcccccccccccccchhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccchhhhccC
Confidence            000000 01111111111122211   1     01123478999999999999999999999999999999999999998


Q ss_pred             -CCCCChh--HHHHHhhhhhccccc
Q 024284          224 -PELENLP--VRISGLLILIILHFS  245 (269)
Q Consensus       224 -~e~e~~~--~~~~I~~ILYaT~~~  245 (269)
                       ++.+..|  .+++|+.|||+|++.
T Consensus       238 ~~~~e~~~~~~v~rI~~ilyat~~g  262 (295)
T KOG3000|consen  238 SPDPESIPNVMVKRILSILYATEEG  262 (295)
T ss_pred             CCccccccHHHHHHHHHHHhhhhcc
Confidence             5666777  899999999999863

>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG2046 consensus Calponin [Cytoskeleton] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
2r8u_A268 Structure Of Fragment Of Human End-Binding Protein 4e-40
1vka_A153 Southeast Collaboratory For Structural Genomics: Hy 2e-28
1pa7_A130 Crystal Structure Of Amino-Terminal Microtubule Bin 4e-28
1v5k_A115 Solution Structure Of The Ch Domain From Mouse Eb-1 4e-27
1wyo_A159 Solution Structure Of The Ch Domain Of Human Microt 5e-27
3co1_A132 Crystal Structure Of Microtubule Binding Domain Of 5e-27
2qjz_A123 Structural Basis Of Microtubule Plus End Tracking B 4e-26
2qjx_A127 Structural Basis Of Microtubule Plus End Tracking B 1e-21
4abo_I145 Mal3 Ch Domain Homology Model And Mammalian Tubulin 5e-19
3tq7_B82 Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do 5e-11
1yig_A76 Crystal Structure Of The Human Eb1 C-Terminal Dimer 5e-09
1yib_A76 Crystal Structure Of The Human Eb1 C-terminal Dimer 5e-09
1txq_B86 Crystal Structure Of The Eb1 C-Terminal Domain Comp 7e-09
1wu9_A80 Crystal Structure Of The C-Terminal Domain Of The E 1e-08
3gjo_A72 Crystal Structure Of Human Eb1 In Complex With Micr 1e-08
3tq7_A78 Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do 2e-08
4e61_A106 Crystal Structure Of The Eb1-Like Motif Of Bim1p Le 2e-05
3mtu_A75 Structure Of The Tropomyosin Overlap Complex From C 7e-04
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1) Containing The N-Terminal Domain At 1.35 A Resolution Length = 268 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 134/230 (58%), Gaps = 18/230 (7%)
Query: 14  VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQN 73
           + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN
Sbjct: 15  LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQN 74
Query: 74  YKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRC 133
           +K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R 
Sbjct: 75  FKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR- 130
Query: 134 KGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHSKISGPRQAKIYGA------------N 181
             G+E +   S  ++ +L         S       IS  R A    A            N
Sbjct: 131 -QGQETAVAPSL-VAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGVGN 188
Query: 182 SAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPV 231
              E   L +++  LKL+V+ LEKERDFYF KLR+IE++CQ  E EN PV
Sbjct: 189 GDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPV 238
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment Length = 153 Back     alignment and structure
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding Domain Of Eb1 Length = 130 Back     alignment and structure
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1 Length = 115 Back     alignment and structure
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule- Associated Protein RpEB FAMILY MEMBER 3 Length = 159 Back     alignment and structure
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human Eb3 Length = 132 Back     alignment and structure
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 123 Back     alignment and structure
>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 127 Back     alignment and structure
>pdb|4ABO|I Chain I, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of Mal3-Gtpgammas-Microtubules Length = 145 Back     alignment and structure
>pdb|3TQ7|B Chain B, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 82 Back     alignment and structure
>pdb|1YIG|A Chain A, Crystal Structure Of The Human Eb1 C-Terminal Dimerization Domain Length = 76 Back     alignment and structure
>pdb|1YIB|A Chain A, Crystal Structure Of The Human Eb1 C-terminal Dimerization Domain Length = 76 Back     alignment and structure
>pdb|1TXQ|B Chain B, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 86 Back     alignment and structure
>pdb|1WU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of The End- Binding Protein 1 (Eb1) Length = 80 Back     alignment and structure
>pdb|3GJO|A Chain A, Crystal Structure Of Human Eb1 In Complex With Microtubule Tip Localization Signal Peptide Of Macf Length = 72 Back     alignment and structure
>pdb|3TQ7|A Chain A, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 78 Back     alignment and structure
>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p Length = 106 Back     alignment and structure
>pdb|3MTU|A Chain A, Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle Length = 75 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
2r8u_A268 Microtubule-associated protein RP/EB family member 2e-73
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 4e-57
2qjz_A123 Microtubule-associated protein RP/EB family member 9e-55
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 2e-54
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 8e-51
3tq7_B82 Microtubule-associated protein RP/EB family membe; 4e-18
3mtu_A75 Tropomyosin alpha-1 chain, microtubule-associated 3e-17
4e61_A106 Protein BIM1; EB1-like motif, coiled-coil, spindle 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Length = 268 Back     alignment and structure
 Score =  225 bits (573), Expect = 2e-73
 Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 19/251 (7%)

Query: 1   MATNI---GMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPM 57
           MA N+    +      + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + +
Sbjct: 1   MAVNVYSTSVTSDN--LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIAL 58

Query: 58  HKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSV 117
            KV F AK E++ IQN+K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+ 
Sbjct: 59  KKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDAN 118

Query: 118 NGGIMNENYNPVERRC---------KGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHSK 168
             G   ++Y+PV  R                +       S S       +          
Sbjct: 119 YDG---KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKA 175

Query: 169 ISGPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELEN 228
             G  +      N   E   L +++  LKL+V+ LEKERDFYF KLR+IE++CQ  E EN
Sbjct: 176 GPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGEN 235

Query: 229 LPV--RISGLL 237
            PV  RI  +L
Sbjct: 236 DPVLQRIVDIL 246
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 159 Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Length = 123 Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Length = 127 Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Length = 145 Back     alignment and structure
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} Length = 82 Back     alignment and structure
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C* Length = 75 Back     alignment and structure
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae} Length = 106 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
2r8u_A268 Microtubule-associated protein RP/EB family member 100.0
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 100.0
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 100.0
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 100.0
2qjz_A123 Microtubule-associated protein RP/EB family member 100.0
3tq7_B82 Microtubule-associated protein RP/EB family membe; 99.92
4e61_A106 Protein BIM1; EB1-like motif, coiled-coil, spindle 99.88
3mtu_A75 Tropomyosin alpha-1 chain, microtubule-associated 99.86
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 98.75
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 98.63
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 98.6
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 98.49
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 98.47
1wyl_A116 NEDD9 interacting protein with calponin homology a 98.39
1bhd_A118 Utrophin; calponin homology, actin binding, struct 98.37
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 98.3
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 98.26
2d88_A121 Protein mical-3; all alpha, calponin homology doma 98.19
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 98.18
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 98.16
1ujo_A144 Transgelin; CH domain, actin binding, structural g 98.14
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 98.13
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 98.12
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 98.1
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 98.06
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 98.05
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 98.05
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 98.04
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 98.02
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 98.02
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 97.99
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 97.96
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 97.93
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 97.89
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 97.87
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 97.83
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 97.83
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 97.74
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 97.63
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 97.62
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 97.6
3hoc_A272 Filamin-A; calponin homology domain, actin binding 97.59
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 97.52
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 97.35
3hoc_A272 Filamin-A; calponin homology domain, actin binding 97.2
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 97.02
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 97.0
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 96.95
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 96.85
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 96.78
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 96.26
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 96.22
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 95.89
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 95.15
3qh9_A81 Liprin-beta-2; coiled-coil, dimerization, structur 80.4
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
Probab=100.00  E-value=7.4e-89  Score=623.62  Aligned_cols=242  Identities=38%  Similarity=0.583  Sum_probs=128.3

Q ss_pred             CCccc-ccccCCCccCHHHHHHHhHhhhcCCcchhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHH
Q 024284            1 MATNI-GMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQD   79 (269)
Q Consensus         1 m~~~~-gmm~~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~   79 (269)
                      ||.|| |||+.++++||+|||+|||++|+++|+||||||||||||||||+||||+|||+||||+|++||||++||||||+
T Consensus         1 ma~nv~~t~~~~~~~sR~elL~WiN~~L~~~~~kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~   80 (268)
T 2r8u_A            1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA   80 (268)
T ss_dssp             CCCCCCTTSCCCCCCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHH
T ss_pred             CceeEecccCcccccCHHHHHHHHHHHhcCCcchHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHH
Confidence            89999 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCCC--CCCC--CCCCcccccCC
Q 024284           80 VFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERS--SRGS--QKISKSLQTNN  155 (269)
Q Consensus        80 af~k~~I~k~ipV~kLiKgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~~~~~~--~~~~--~~~~~s~~~~~  155 (269)
                      +|+|+||+|+|||++|||||||||||||||||+|||+|++|   ++|||++||.+.+.+++  ...+  .+++++..++.
T Consensus        81 ~F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~~---~~Yd~~~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~  157 (268)
T 2r8u_A           81 GFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSS  157 (268)
T ss_dssp             HHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHTC--------------------------
T ss_pred             HHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHcCCC---CCCCHHHHhcCCCCCCCCCCCcccccCCCCcccccc
Confidence            99999999999999999999999999999999999999986   68999999964322111  1000  11111110000


Q ss_pred             CCCCCCCC----CCCCCCCCCccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcCCCCCChh
Q 024284          156 MHNAGSGD----IGHSKISGPRQA-KIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLP  230 (269)
Q Consensus       156 ~~~~~~~~----~~~~~~s~p~~~-~~~~~~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e~e~~~  230 (269)
                      .++.++.+    ++.++.+.+.++ +...+.+..+++++.+|+++||+++++|||||||||+||||||||||+++.++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~lk~~v~~lEkERDFYF~KLRdIEilcQe~~~~~~~  237 (268)
T 2r8u_A          158 AAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDP  237 (268)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCcccccCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccH
Confidence            00000000    000000011100 0111233456889999999999999999999999999999999999999888888


Q ss_pred             HHHHHhhhhhccccc
Q 024284          231 VRISGLLILIILHFS  245 (269)
Q Consensus       231 ~~~~I~~ILYaT~~~  245 (269)
                      ++++|++||||||+.
T Consensus       238 ~~~~I~~ILYaTeeg  252 (268)
T 2r8u_A          238 VLQRIVDILYATDEG  252 (268)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHhhccccC
Confidence            999999999999985
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1 Back     alignment and structure
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae} Back     alignment and structure
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C* Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 269
d2qjza1120 a.40.1.1 (A:13-132) Microtubule-associated protein 1e-55
d1wu9a159 a.245.1.1 (A:191-249) Microtubule-associated prote 8e-19
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-04
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (439), Expect = 1e-55
 Identities = 54/119 (45%), Positives = 83/119 (69%), Gaps = 3/119 (2%)

Query: 14  VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQN 73
           + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN
Sbjct: 3   LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQN 62

Query: 74  YKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 132
           +K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct: 63  FKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 118
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 100.0
d1wu9a159 Microtubule-associated protein EB1, C-terminal dim 99.95
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.2
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.68
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.39
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 98.35
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 98.28
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 98.2
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 98.15
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 98.12
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 98.1
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 97.96
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 97.85
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 97.79
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 97.64
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 97.6
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 97.33
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 94.91
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-58  Score=376.39  Aligned_cols=118  Identities=46%  Similarity=0.872  Sum_probs=115.3

Q ss_pred             ccCHHHHHHHhHhhhcCCcchhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccccccc
Q 024284           13 FVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEV   92 (269)
Q Consensus        13 ~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~ipV   92 (269)
                      .+||+|||+|||++|+++|+||||||||||||||||+||||+|||+||||+|++|+||++||||||++|+|+||+|+|||
T Consensus         2 ~~SR~eLL~WiN~~L~~~~~kiEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k~i~v   81 (120)
T d2qjza1           2 NLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPV   81 (120)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCH
T ss_pred             CcCHHHHHHHHHHHhCCChhhHHHhcccHHHHHHHHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhc
Q 024284           93 NKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRC  133 (269)
Q Consensus        93 ~kLiKgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~  133 (269)
                      ++||||||||||||+||||+|||+|+++   ++|||.+||.
T Consensus        82 ~kLikgk~qdnleflqWfk~f~d~n~~~---~~Yda~~~R~  119 (120)
T d2qjza1          82 DKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAARQ  119 (120)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHTS
T ss_pred             HHHhcccchhHHHHHHHHHHHHHhcCCC---CCCCHHhhhC
Confidence            9999999999999999999999999986   5899999995
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure