Citrus Sinensis ID: 024293

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MKNQEHEEERKRRENHINEQVEAETMAASAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKKN
cccHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHccccEEEEcccccccccccccc
cccccHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHcHHHHcHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHccccccEEEEccHHHHHHHHHHHHccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHcccEEEEEHHHHccccccccc
MKNQEHEEERKRRENHINEQVEAETMAASAATDGVAATALRSVIQRVHQAaerssrppdriRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAaqlpddlewhfignlqsnkvkpllagvpnlamvesvdnEKIAGRLNRMVETMGRKPLKVLVQVNTsgeesksgvepsgCLELVKHVsqncpnlefcglmtigmpdytstpenFKTLAKCRSEVCKalgipeeqcdlsmgmsGDFELAIEMGSTNVRIGStifgareypkkn
mknqeheeerkrrenhineqvEAETMAASAATDGVAATALRSVIQRVHqaaerssrppdririvavsktkpvsvIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMvetmgrkpLKVLVQVNTsgeesksgvepSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIgstifgareypkkn
MknqeheeerkrrenhineQVEAEtmaasaatdgvaataLRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKKN
************************************************************IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQ***************GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG********
**************************************ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF**RE*****
**************NHINEQVEAETMAASAATDGVAATALRSVIQ************PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQV*************SGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKKN
***************************ASAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGARE*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKxxxxxxxxxxxxxxxxxxxxxETMAASAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query269 2.2.26 [Sep-21-2011]
O94903275 Proline synthase co-trans yes no 0.895 0.876 0.505 1e-60
Q9Z2Y8274 Proline synthase co-trans yes no 0.847 0.832 0.520 3e-60
Q5R4Z1275 Proline synthase co-trans yes no 0.895 0.876 0.501 2e-59
Q3T0G5273 Proline synthase co-trans yes no 0.851 0.838 0.514 3e-59
Q1ZXI6255 Proline synthase co-trans yes no 0.847 0.894 0.479 3e-54
Q9CPD5233 UPF0001 protein PM0112 OS yes no 0.821 0.948 0.461 1e-45
Q9P6Q1237 UPF0001 protein C644.09 O yes no 0.732 0.831 0.480 1e-44
P52055233 UPF0001 protein in pilT-p N/A no 0.765 0.884 0.479 2e-42
Q9KUQ4236 UPF0001 protein VC_0461 O yes no 0.802 0.915 0.442 2e-42
P52057244 Proline synthase co-trans yes no 0.862 0.950 0.425 3e-42
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1 Back     alignment and function desciption
 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/253 (50%), Positives = 171/253 (67%), Gaps = 12/253 (4%)

Query: 27  AASAATDGVAATALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHR 84
           A S + +     ALR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R
Sbjct: 4   AGSMSAELGVGCALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQR 63

Query: 85  CFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKI 139
            FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL M+E+VD+ K+
Sbjct: 64  TFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKL 122

Query: 140 AGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMT 198
           A ++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMT
Sbjct: 123 ADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMT 182

Query: 199 IGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRI 255
           IG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ A+E+GSTNVRI
Sbjct: 183 IGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRI 242

Query: 256 GSTIFGAREYPKK 268
           GSTIFG R+Y KK
Sbjct: 243 GSTIFGERDYSKK 255

Homo sapiens (taxid: 9606)
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1 Back     alignment and function description
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2 Back     alignment and function description
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1 Back     alignment and function description
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.09 PE=3 SV=1 Back     alignment and function description
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1 Back     alignment and function description
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1 Back     alignment and function description
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
359483335264 PREDICTED: proline synthase co-transcrib 0.947 0.965 0.796 1e-117
302144100311 unnamed protein product [Vitis vinifera] 0.947 0.819 0.796 1e-116
449479493246 PREDICTED: proline synthase co-transcrib 0.907 0.991 0.796 1e-112
297844046242 alanine racemase family protein [Arabido 0.888 0.987 0.806 1e-110
30682530255 putative pyridoxal phosphate-dependent e 0.918 0.968 0.788 1e-110
224117946238 predicted protein [Populus trichocarpa] 0.877 0.991 0.809 1e-110
255554799270 proline synthetase associated protein, p 0.851 0.848 0.825 1e-110
18391333257 putative pyridoxal phosphate-dependent e 0.918 0.961 0.781 1e-108
147861921245 hypothetical protein VITISV_024616 [Viti 0.895 0.983 0.788 1e-108
225460901245 PREDICTED: proline synthase co-transcrib 0.895 0.983 0.788 1e-108
>gi|359483335|ref|XP_002263767.2| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/256 (79%), Positives = 229/256 (89%), Gaps = 1/256 (0%)

Query: 13  RENHINEQVEAETMAASAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPV 72
           R+    E+ E  +MAASA  DGVAA ALRSV+ RV QAAERS R P +IR+VAVSKTK V
Sbjct: 7   RDGERAEEAEQSSMAASA-MDGVAAAALRSVLHRVQQAAERSGRGPHQIRVVAVSKTKSV 65

Query: 73  SVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVE 132
           S+IR+VY++GHRCFGENYVQEI+EKA QLP+D+EWHFIGNLQSNKVKPLL GVPNLA+VE
Sbjct: 66  SLIREVYDSGHRCFGENYVQEIIEKAPQLPEDIEWHFIGNLQSNKVKPLLTGVPNLAVVE 125

Query: 133 SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLE 192
           +VD+EKIA RL+RMV T+GRKPLKV+VQVNTSGEESKSGV+P+ C+ELVKHV+  CPNLE
Sbjct: 126 TVDDEKIADRLDRMVATIGRKPLKVMVQVNTSGEESKSGVDPAACVELVKHVALGCPNLE 185

Query: 193 FCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTN 252
           F GLMTIGM DYTSTPENFKTLA CRSEVCK+LGI EEQC+LSMGMSGDFELAIEMGSTN
Sbjct: 186 FGGLMTIGMLDYTSTPENFKTLANCRSEVCKSLGITEEQCELSMGMSGDFELAIEMGSTN 245

Query: 253 VRIGSTIFGAREYPKK 268
           VRIGSTIFGAREYPKK
Sbjct: 246 VRIGSTIFGAREYPKK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302144100|emb|CBI23205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449479493|ref|XP_004155614.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297844046|ref|XP_002889904.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335746|gb|EFH66163.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30682530|ref|NP_849649.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] gi|3157934|gb|AAC17617.1| Similar to hypothetical protein F09E5.8 gb|U37429 from C. elegans. ESTs gb|T42019 and gb|N97000 come from this gene [Arabidopsis thaliana] gi|332190697|gb|AEE28818.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224117946|ref|XP_002331519.1| predicted protein [Populus trichocarpa] gi|222873743|gb|EEF10874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255554799|ref|XP_002518437.1| proline synthetase associated protein, putative [Ricinus communis] gi|223542282|gb|EEF43824.1| proline synthetase associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18391333|ref|NP_563897.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] gi|16226282|gb|AAL16123.1|AF428291_1 At1g11930/F12F1_20 [Arabidopsis thaliana] gi|21436037|gb|AAM51596.1| At1g11930/F12F1_20 [Arabidopsis thaliana] gi|332190696|gb|AEE28817.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460901|ref|XP_002278892.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein [Vitis vinifera] gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
TAIR|locus:2008910257 AT1G11930 [Arabidopsis thalian 0.851 0.891 0.800 9.7e-96
UNIPROTKB|Q0DKP7214 Os05g0150000 "Os05g0150000 pro 0.765 0.962 0.757 8.2e-83
UNIPROTKB|A8HP79251 CHLREDRAFT_116897 "Predicted p 0.851 0.912 0.617 1.2e-72
UNIPROTKB|O94903275 PROSC "Proline synthase co-tra 0.847 0.829 0.520 9.6e-57
MGI|MGI:1891207274 Prosc "proline synthetase co-t 0.847 0.832 0.520 4.2e-56
UNIPROTKB|Q3T0G5273 PROSC "Proline synthase co-tra 0.847 0.835 0.516 2.3e-55
RGD|1308962275 Prosc "proline synthetase co-t 0.847 0.829 0.504 2.9e-55
UNIPROTKB|F1RX84275 PROSC "Uncharacterized protein 0.847 0.829 0.525 4.8e-55
UNIPROTKB|E1C516276 PROSC "Uncharacterized protein 0.847 0.826 0.516 7e-54
DICTYBASE|DDB_G0278713255 prosc "alanine racemase N-term 0.847 0.894 0.483 2.1e-52
TAIR|locus:2008910 AT1G11930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 185/231 (80%), Positives = 205/231 (88%)

Query:    40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
             LRSV QRV+QAAE++ R  D+IR+VAVSKTKPVS+IRQVY+AG R FGENYVQEI+EKA 
Sbjct:    27 LRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKAP 86

Query:   100 QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLV 159
             QLP+D+EWHFIGNLQSNKVKPLL+GVPNL  VESVD+EKIA  L+R+V  +GRKPLKV V
Sbjct:    87 QLPEDIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKVFV 146

Query:   160 QVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRS 219
             QVNTSGE+SK GVEPSGC+ L KHV + C NLEF GLMTIGM DYTSTPENFK LAKCRS
Sbjct:   147 QVNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRS 206

Query:   220 EVCKALGIPEEQCDLSMGMSGDFELA--IEMGSTNVRIGSTIFGAREYPKK 268
             EVCK LGIPEEQC+LSMGMSGDFELA  IE+GSTNVRIGSTIFGAREYPKK
Sbjct:   207 EVCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAREYPKK 257
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IBA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
UNIPROTKB|Q0DKP7 Os05g0150000 "Os05g0150000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8HP79 CHLREDRAFT_116897 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|O94903 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1891207 Prosc "proline synthetase co-transcribed" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0G5 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308962 Prosc "proline synthetase co-transcribed homolog (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX84 PROSC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C516 PROSC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278713 prosc "alanine racemase N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9Z2Y8PROSC_MOUSENo assigned EC number0.52060.84750.8321yesno
Q3T0G5PROSC_BOVINNo assigned EC number0.51440.85130.8388yesno
Q5R4Z1PROSC_PONABNo assigned EC number0.50190.89590.8763yesno
Q9KUQ4Y461_VIBCHNo assigned EC number0.44200.80290.9152yesno
Q9CPD5Y112_PASMUNo assigned EC number0.46150.82150.9484yesno
P44506Y090_HAEINNo assigned EC number0.44820.81410.9240yesno
O94903PROSC_HUMANNo assigned EC number0.50590.89590.8763yesno
P52057PROSC_CAEELNo assigned EC number0.42560.86240.9508yesno
P67081YGGS_ECOL6No assigned EC number0.42850.81040.9316yesno
Q1ZXI6PROSC_DICDINo assigned EC number0.47960.84750.8941yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
cd06822227 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosph 1e-128
cd00635222 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxa 9e-92
COG0325228 COG0325, COG0325, Predicted enzyme with a TIM-barr 3e-90
cd06824224 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphat 1e-83
TIGR00044229 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, 3e-67
pfam01168217 pfam01168, Ala_racemase_N, Alanine racemase, N-ter 7e-39
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 9e-20
COG3457 353 COG3457, COG3457, Predicted amino acid racemase [A 4e-05
>gnl|CDD|143496 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information 
 Score =  362 bits (932), Expect = e-128
 Identities = 135/228 (59%), Positives = 173/228 (75%), Gaps = 7/228 (3%)

Query: 40  LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK 97
           L + ++R+ QA +R+S+  P  + R+VAVSKTKP  +I++ Y+AG R FGENYVQE++EK
Sbjct: 1   LIANLKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEK 60

Query: 98  AAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLK 156
           A  LP D++WHFIG+LQSNKVK  L  VPNL MVE+VD+EK+A +LN+  E +G R+PLK
Sbjct: 61  APDLPIDIKWHFIGHLQSNKVK-KLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLK 119

Query: 157 VLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT---STPENFKT 213
           V+VQVNTSGEESKSG+EPS  +ELVKH+ + CPNL+F GLMTIG   Y+       +F  
Sbjct: 120 VMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLC 179

Query: 214 LAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 261
           L  CR +VC+ LGI  +  +LSMGMS DFE AIEMGSTNVR+GS IFG
Sbjct: 180 LVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227

This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog). Length = 227
>gnl|CDD|143483 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>gnl|CDD|223402 COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|143497 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|225988 COG3457, COG3457, Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 269
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 100.0
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 100.0
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 100.0
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 100.0
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 100.0
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 100.0
KOG3157244 consensus Proline synthetase co-transcribed protei 100.0
cd06815 353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 100.0
COG0787 360 Alr Alanine racemase [Cell envelope biogenesis, ou 100.0
cd06825 368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 100.0
cd06826 365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 100.0
TIGR00492 367 alr alanine racemase. This enzyme interconverts L- 100.0
PRK03646 355 dadX alanine racemase; Reviewed 100.0
PRK00053 363 alr alanine racemase; Reviewed 100.0
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 100.0
cd00430 367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 100.0
PRK13340 406 alanine racemase; Reviewed 100.0
cd06827 354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 100.0
cd07376 345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 100.0
cd06821 361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 100.0
cd06817 389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06820 353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 100.0
cd06814 379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 100.0
cd06811 382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.98
cd06819 358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.97
cd06813 388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.96
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.96
cd06812 374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.96
cd06818 382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.95
COG3457 353 Predicted amino acid racemase [Amino acid transpor 99.92
COG3616 368 Predicted amino acid aldolase or racemase [Amino a 99.87
cd06810 368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 99.86
cd06839 382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 99.86
cd06828 373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 99.84
cd00622 362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 99.82
cd06842 423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 99.82
cd06843 377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 99.82
TIGR03099 398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 99.81
TIGR01048 417 lysA diaminopimelate decarboxylase. This family co 99.81
PLN02537 410 diaminopimelate decarboxylase 99.8
cd06841 379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 99.79
PRK11165 420 diaminopimelate decarboxylase; Provisional 99.46
COG0019 394 LysA Diaminopimelate decarboxylase [Amino acid tra 99.28
cd06830 409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 99.25
cd06836 379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 99.22
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 99.19
cd06831 394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 99.05
TIGR01047 380 nspC carboxynorspermidine decarboxylase. This prot 98.97
TIGR01273 624 speA arginine decarboxylase, biosynthetic. A disti 98.94
cd06840 368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 98.93
PRK05354 634 arginine decarboxylase; Provisional 98.91
PRK08961 861 bifunctional aspartate kinase/diaminopimelate deca 98.81
cd06829 346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 98.69
PLN02439 559 arginine decarboxylase 98.68
KOG0622 448 consensus Ornithine decarboxylase [Amino acid tran 98.17
PF00834201 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam 86.79
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-49  Score=343.53  Aligned_cols=223  Identities=49%  Similarity=0.684  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCC--CceeeeecC
Q 024293           35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGN  112 (269)
Q Consensus        35 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~--~I~~~~lG~  112 (269)
                      .+.+|+..++++|.++|..+||++..++|+||+|++.++.|+.++++|++.||+|++||+..+.+.+..  +|.|||||+
T Consensus         2 ~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~   81 (228)
T COG0325           2 DIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGP   81 (228)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEech
Confidence            378999999999999999999999999999999999999999999999999999999999999999765  499999999


Q ss_pred             CChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeE
Q 024293          113 LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLE  192 (269)
Q Consensus       113 ~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~L~  192 (269)
                      +|+||++.++   +++++++|||++..|++|+++|...++ +++|+|+||+++|.+|.|+.|+++..++..+. .+|+|+
T Consensus        82 LQsNK~k~v~---~~~~~ihSlDr~klA~~l~kra~~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~  156 (228)
T COG0325          82 LQSNKVKLVA---ENFDWIHSLDRLKLAKELNKRALELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLE  156 (228)
T ss_pred             hhhhHHHHHH---hhcceeeecCHHHHHHHHHHHHHhCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCe
Confidence            9999999999   579999999999999999999998887 89999999999999999999999999999999 999999


Q ss_pred             EEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCCCCC
Q 024293          193 FCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY  265 (269)
Q Consensus       193 i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~~p~  265 (269)
                      ++||||+++.+++  ....+|..+.++++++..+ +.  ++..+|||||+||+.|+.+|+|+||+|++|||.++|
T Consensus       157 l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~-~~--~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~  228 (228)
T COG0325         157 LRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAK-YP--PIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY  228 (228)
T ss_pred             EeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHh-cC--CCCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence            9999999997554  4567899999999999875 33  458899999999999999999999999999999876

>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
1b54_A257 Crystal Structure Of A Yeast Hypothetical Protein-A 4e-39
1ct5_A256 Crystal Structure Of Yeast Hypothetical Protein Ybl 9e-37
1w8g_A234 Crystal Structure Of E. Coli K-12 Yggs Length = 234 1e-36
3sy1_A245 Crystal Structure Of Engineered Protein. Northeast 6e-31
3r79_A244 Crystal Structure Of An Uncharactertized Protein Fr 4e-29
3cpg_A282 Crystal Structure Of An Unknown Protein From Bifido 2e-28
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A Structure From Bnl's Human Proteome Project Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (398), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 134/221 (60%), Gaps = 20/221 (9%)
Query: 60  RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVK 119
           +I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K
Sbjct: 41  KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 120 PLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-----KPLKVLVQVNTSGEESKSGVEP 174
             LA VPNL  VE++D+ K A +LN   E+  +      P+   VQ+NTS E+ KSG+  
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLN---ESRAKFQPDCNPILCNVQINTSHEDQKSGLNN 156
Query: 175 SG-CLELVK-HVSQNCPNLEFCGLMTIGMPD--YTSTPEN--FKTLAKCRSEVCKALGIP 228
                E++   +S+ C  ++  GLMTIG  +  +  + EN  F TL + + ++    G  
Sbjct: 157 EAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS 216
Query: 229 EEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKKN 269
                LSMGMS DF  AI  G+  VRIG+ IFGAR  P KN
Sbjct: 217 ---LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR--PPKN 252
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-Selenomet Crystal Length = 256 Back     alignment and structure
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs Length = 234 Back     alignment and structure
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or70 Length = 245 Back     alignment and structure
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From Agrobacterium Tumefaciens Length = 244 Back     alignment and structure
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From Bifidobacterium Adolescentis Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 1e-117
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 1e-111
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 1e-106
3r79_A244 Uncharacterized protein; PSI-biology, structural g 2e-95
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Length = 256 Back     alignment and structure
 Score =  334 bits (859), Expect = e-117
 Identities = 96/256 (37%), Positives = 138/256 (53%), Gaps = 14/256 (5%)

Query: 23  AETMAASAATDGVAATALRSVIQRVHQAAE--RSSRPPDRIRIVAVSKTKPVSVIRQVYE 80
           +  +               SV + V+  A+    +    +I ++ VSK KP S I+ +Y+
Sbjct: 1   STGITYDEDRKTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYD 60

Query: 81  AGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIA 140
            G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K  LA VPNL  VE++D+ K A
Sbjct: 61  HGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK-DLAKVPNLYSVETIDSLKKA 119

Query: 141 GRLNRMVETMGR--KPLKVLVQVNTSGEESKSGVEP-SGCLELVKHV-SQNCPNLEFCGL 196
            +LN           P+   VQ+NTS E+ KSG+   +   E++    S+ C  ++  GL
Sbjct: 120 KKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGL 179

Query: 197 MTIGMPDYTSTP----ENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTN 252
           MTIG  + +        +F TL + + ++    G   +   LSMGMS DF  AI  G+  
Sbjct: 180 MTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLK---LSMGMSADFREAIRQGTAE 236

Query: 253 VRIGSTIFGAREYPKK 268
           VRIG+ IFGAR    +
Sbjct: 237 VRIGTDIFGARPPKNE 252
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Length = 245 Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Length = 282 Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 100.0
3r79_A244 Uncharacterized protein; PSI-biology, structural g 100.0
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 100.0
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 100.0
4ecl_A 374 Serine racemase, vantg; antibiotic resistance, van 100.0
4a3q_A 382 Alanine racemase 1; isomerase, PLP-dependent enzym 100.0
3e5p_A 371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 100.0
3mub_A 367 Alanine racemase; alpha/beta barrel, extended beta 100.0
3kw3_A 376 Alanine racemase; niaid, ssgcid, seattle structura 100.0
3hur_A 395 Alanine racemase; structural genomics, isomerase, 100.0
2vd8_A 391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 100.0
1xfc_A 384 Alanine racemase; alpha-beta barrel, beta-structur 100.0
1vfs_A 386 Alanine racemase; TIM-barrel, greek-KEY motief, is 100.0
1bd0_A 388 Alanine racemase; isomerase, pyridoxal phosphate, 100.0
3llx_A 376 Predicted amino acid aldolase or racemase; structu 100.0
2dy3_A 361 Alanine racemase; alpha/beta barrel, isomerase; HE 100.0
3gwq_A 426 D-serine deaminase; structural genomics, joint cen 100.0
3co8_A 380 Alanine racemase; protein structure initiative II, 100.0
2rjg_A 379 Alanine racemase; alpha/beta barrel, cell shape, c 100.0
1rcq_A 357 Catabolic alanine racemase DADX; alpha-beta barrel 100.0
3anu_A 376 D-serine dehydratase; PLP-dependent fold-type III 100.0
2p3e_A 420 Diaminopimelate decarboxylase; southeast collabora 99.97
1twi_A 434 Diaminopimelate decarboxylase; antibiotic resistan 99.94
2qgh_A 425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 99.93
2j66_A 428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 99.93
2o0t_A 467 Diaminopimelate decarboxylase; PLP binding enzyme, 99.91
2nva_A 372 Arginine decarboxylase, A207R protein; PLP, TIM ba 99.91
2plj_A 419 Lysine/ornithine decarboxylase; type IV decarboxyl 99.91
2yxx_A 386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 99.88
1f3t_A 425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 99.88
3vab_A 443 Diaminopimelate decarboxylase 1; structural genomi 99.88
3n2b_A 441 Diaminopimelate decarboxylase; LYSA, lyase, struct 99.88
3btn_A 448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 99.85
2oo0_A 471 ODC, ornithine decarboxylase; beta-alpha barrel, s 99.84
1knw_A 425 Diaminopimelate decarboxylase; pyridoxal-phosphate 99.82
7odc_A 424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 99.8
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 99.68
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 99.67
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 99.63
3mt1_A 365 Putative carboxynorspermidine decarboxylase prote; 99.51
3n29_A 418 Carboxynorspermidine decarboxylase; lyase; HET: PL 99.44
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 90.13
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
Probab=100.00  E-value=5.4e-53  Score=374.94  Aligned_cols=226  Identities=40%  Similarity=0.543  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCC----CCceeeee
Q 024293           35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP----DDLEWHFI  110 (269)
Q Consensus        35 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~----~~I~~~~l  110 (269)
                      .|++|++.+++++.++|+.+||.|++++|+||||+||++.++.++++|+++||||++|||.+||+.+.    ++|.||+|
T Consensus         4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~i   83 (245)
T 3sy1_A            4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFA   83 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeec
Confidence            58999999999999999999999999999999999999888889999999999999999999998854    37899999


Q ss_pred             cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCCCceeEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC
Q 024293          111 GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN  190 (269)
Q Consensus       111 G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~~~i~V~lkIDtG~em~R~G~~~ee~~~~~~~i~~~~~~  190 (269)
                      |++|+++++.++   +.++++++|||+++++.|++.+.+.++ +++|||+||||+||+|+||.|+++.++++.+. .+|+
T Consensus        84 G~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~  158 (245)
T 3sy1_A           84 GPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRPAELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPR  158 (245)
T ss_dssp             SCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSCTTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTT
T ss_pred             CCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCC
Confidence            999999999988   358999999999999999999998888 99999999999999999999999999999998 9999


Q ss_pred             eEEEEeEeeCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhCCCCCCCC
Q 024293          191 LEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK  268 (269)
Q Consensus       191 L~i~GlmTH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG~~p~~~~  268 (269)
                      |++.|||||++..++  .....|.++.++++.|++. +.+  +..+|||||+||+.++++|+|+||||++|||+++|..+
T Consensus       159 l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~-~~~--~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~~  235 (245)
T 3sy1_A          159 LRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTR-YPH--IDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK  235 (245)
T ss_dssp             EEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-STT--CCEEECCCSTTHHHHHHHTCCEEEESHHHHCC------
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC--CCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCCC
Confidence            999999999998665  4567899999999999875 443  48899999999999999999999999999999999653
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 269
d1ct5a_244 c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker 2e-46
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (387), Expect = 2e-46
 Identities = 93/235 (39%), Positives = 131/235 (55%), Gaps = 14/235 (5%)

Query: 37  ATALRSVIQRVHQAAE--RSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEI 94
                SV + V+  A+    +    +I ++ VSK KP S I+ +Y+ G R FGENYVQE+
Sbjct: 14  IAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQEL 73

Query: 95  VEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR--MVETMGR 152
           +EKA  LPDD++WHFIG LQ+NK    LA VPNL  VE++D+ K A +LN          
Sbjct: 74  IEKAKLLPDDIKWHFIGGLQTNKC-KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDC 132

Query: 153 KPLKVLVQVNTSGEESKSGVEPSGCLELVK--HVSQNCPNLEFCGLMTIGMPDYTSTPE- 209
            P+   VQ+NTS E+ KSG+     +  V    +S+ C  ++  GLMTIG  + +     
Sbjct: 133 NPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSK 192

Query: 210 ---NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 261
              +F TL + + ++    G   +   LSMGMS DF  AI  G+  VRIG+ IFG
Sbjct: 193 ENRDFATLVEWKKKIDAKFGTSLK---LSMGMSADFREAIRQGTAEVRIGTDIFG 244

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 100.0
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 100.0
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 100.0
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 100.0
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 99.24
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.12
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 99.1
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 98.94
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 98.81
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 80.53
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-43  Score=306.34  Aligned_cols=225  Identities=40%  Similarity=0.632  Sum_probs=188.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--cCCCCCCcEEEEEeccCChHHHHHHHHhCCCeeeeccHHHHHHHHHcCCCCceeeee
Q 024293           33 DGVAATALRSVIQRVHQAAER--SSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI  110 (269)
Q Consensus        33 l~~l~~Nl~~i~~~i~~~~~~--~~~~~~~~~l~aVvKahg~~~i~~l~~~G~~~fgva~i~EA~~lr~~i~~~I~~~~l  110 (269)
                      .+.|..||+.++++|+.+++.  +||+|..++|+||+|+|+.+.|+.++++|++.||+|++|||..+...++.+|.||||
T Consensus        10 ~~ei~~~~~~i~~~I~~~~~~~~~~r~~~~V~LiaVsK~~~~~~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~i~wHfI   89 (244)
T d1ct5a_          10 KTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFI   89 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEEECCCCHHHHHHHHHcCCchhhcchhhhhhhhccccccceeeeee
Confidence            345899999999999988876  789999999999999999999999999999999999999999988778889999999


Q ss_pred             cCCChhcHHhHhhcCCCccEEEeeCcHHHHHHHHHHHHhcCC--CceeEEEEEeCCCCCCccCCChh-hHHHHHHHHH-h
Q 024293          111 GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR--KPLKVLVQVNTSGEESKSGVEPS-GCLELVKHVS-Q  186 (269)
Q Consensus       111 G~~~~~~~~~lv~~~~~~~l~~~v~s~~~a~~L~~~a~~~~~--~~i~V~lkIDtG~em~R~G~~~e-e~~~~~~~i~-~  186 (269)
                      |++|+||++.+++. ..++++++|||++.++.|++.+.+.++  .++.|+|+||+++|.+|.||.|+ ++.++++.+. .
T Consensus        90 G~LQsNKvk~i~~~-~~~~~I~svds~kla~~l~~~~~~~~~~~~~~~~~iQVNi~~e~~KsG~~~~~~l~~~~~~~~~~  168 (244)
T d1ct5a_          90 GGLQTNKCKDLAKV-PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSE  168 (244)
T ss_dssp             SCCCGGGHHHHHHC-TTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHST
T ss_pred             cccccchHHHHHHh-cccccccccccccchhHHHHHHhhhhcccCcceeEEeeecccccccCCCCcHHHHHHHHHHHHHH
Confidence            99999999999842 123679999999999999988876432  16889999999999999999885 7888888773 1


Q ss_pred             cCCCeEEEEeEeeCCCCC----CCcHHHHHHHHHHHHHHHHHcCCCCCcceeecCCccCHHHHHHcCCCeeeeChhhhC
Q 024293          187 NCPNLEFCGLMTIGMPDY----TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG  261 (269)
Q Consensus       187 ~~~~L~i~GlmTH~a~~~----~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~~~~~~~~~VR~G~alyG  261 (269)
                      .+++|++.||||+++.+.    ......|..+..+++.+...++.   ...+|||||+||+.|+++|+||||+|++|||
T Consensus       169 ~~~~l~l~GLM~i~p~~~~~~~~~~~~~F~~l~~l~~~l~~~~~~---~~~LSMGMS~Dye~AI~~GsT~VRIGs~iFG  244 (244)
T d1ct5a_         169 ECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT---SLKLSMGMSADFREAIRQGTAEVRIGTDIFG  244 (244)
T ss_dssp             TCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCC---CCEEECCCTTTHHHHHHTTCSEEEESHHHHC
T ss_pred             hcccchhccccccccCCCCchhhHHHHHHHHHHHHHHHHhccCCC---CCEEeChhhhhHHHHHHCCCCEEEcCchhcC
Confidence            689999999999998532    23446799999999999876543   2579999999999999999999999999998
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure