Citrus Sinensis ID: 024314

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKVF
cccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHccccccHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHcc
cccEEccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHc
msfsffkpsrpktplevVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCmlsgdgevepnADQVLQLATEVCKEDVLILLVHklpilgweARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLrecikfpsLARYILESASFELFFKFvelptfdvasDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEflleppnshimKRYILEVRFLKVMMTLLKVF
msfsffkpsrpktplevvkatkvslmaldikTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLseflleppnshiMKRYILEVRFLKVMMTLLKVF
MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKVF
***************EVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLK**
*S************LEVVKATKVSLM*******************IEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKVF
*************PLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKVF
*SF*FFK*SRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKVF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVExxxxxxxxxxxxxxxxxxxxxLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query269 2.2.26 [Sep-21-2011]
Q9H9S4337 Calcium-binding protein 3 yes no 0.936 0.747 0.437 1e-53
Q9DB16337 Calcium-binding protein 3 yes no 0.936 0.747 0.433 4e-53
Q9FGK3343 Putative MO25-like protei no no 0.959 0.752 0.412 6e-53
Q9Y376341 Calcium-binding protein 3 no no 0.981 0.774 0.453 8e-53
Q29RI6341 Calcium-binding protein 3 yes no 0.981 0.774 0.453 8e-53
Q06138341 Calcium-binding protein 3 no no 0.981 0.774 0.453 8e-53
Q9M0M4343 Putative MO25-like protei no no 0.959 0.752 0.401 1e-51
Q9P7Q8329 Mo25-like protein OS=Schi yes no 0.966 0.790 0.415 2e-46
O18211338 MO25-like protein 2 OS=Ca yes no 0.951 0.757 0.416 7e-45
P91891339 Protein Mo25 OS=Drosophil yes no 0.936 0.743 0.426 9e-43
>sp|Q9H9S4|CB39L_HUMAN Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3 Back     alignment and function desciption
 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/256 (43%), Positives = 165/256 (64%), Gaps = 4/256 (1%)

Query: 12  KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
           K P E+VK  K +L  L+ +     K  +KA EE+ K+   M+ +L G  E EP  + V 
Sbjct: 12  KNPAEIVKILKDNLAILEKQD----KKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVA 67

Query: 72  QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
           QLA E+    +L+ L+  L ++ +E +KD+   ++ +L++++ +    V++I  H  +L 
Sbjct: 68  QLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILF 127

Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
            L+  Y+  ++AL CGIMLRECI+   LA+ IL S  F  FFK+VEL TFD+ASDAF+TF
Sbjct: 128 MLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATF 187

Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
           KDLLT+H  +V+++L  +YD  F+ YEKLL S NYVT+RQSLKLL E +L+  N  IM +
Sbjct: 188 KDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTK 247

Query: 252 YILEVRFLKVMMTLLK 267
           YI +   LK+MM LL+
Sbjct: 248 YISKPENLKLMMNLLR 263
Component of a complex that binds and activates STK11/LKB1. In the complex, required to stabilize the interaction between CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) and STK11/LKB1.
Homo sapiens (taxid: 9606)
>sp|Q9DB16|CB39L_MOUSE Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3 Back     alignment and function description
>sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y376|CAB39_HUMAN Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1 Back     alignment and function description
>sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1 Back     alignment and function description
>sp|Q06138|CAB39_MOUSE Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0M4|MO25M_ARATH Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1 Back     alignment and function description
>sp|Q9P7Q8|PMO25_SCHPO Mo25-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmo25 PE=3 SV=1 Back     alignment and function description
>sp|O18211|MO25M_CAEEL MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=3 SV=1 Back     alignment and function description
>sp|P91891|MO25_DROME Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
255551537 631 structural constituent of ribosome, puta 0.992 0.423 0.872 1e-134
224100291345 predicted protein [Populus trichocarpa] 0.992 0.773 0.868 1e-133
224110494345 predicted protein [Populus trichocarpa] 0.992 0.773 0.868 1e-133
449454434342 PREDICTED: calcium-binding protein 39-li 0.992 0.780 0.842 1e-128
297807935345 Mo25 family protein [Arabidopsis lyrata 0.992 0.773 0.835 1e-128
359806928339 uncharacterized protein LOC100815605 [Gl 0.992 0.787 0.842 1e-128
18419772345 Mo25-like protein [Arabidopsis thaliana] 0.992 0.773 0.823 1e-127
145362644343 Mo25-like protein [Arabidopsis thaliana] 0.992 0.778 0.823 1e-127
110735671345 hypothetical protein [Arabidopsis thalia 0.992 0.773 0.823 1e-126
359477465345 PREDICTED: calcium-binding protein 39-li 0.992 0.773 0.827 1e-126
>gi|255551537|ref|XP_002516814.1| structural constituent of ribosome, putative [Ricinus communis] gi|223543902|gb|EEF45428.1| structural constituent of ribosome, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/267 (87%), Positives = 248/267 (92%)

Query: 1   MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
           MSFSFFKPSRPKTPLEVVKA K SLMALD KTVVEVKALEKA+EE+EKN V MRC+L GD
Sbjct: 1   MSFSFFKPSRPKTPLEVVKAMKDSLMALDTKTVVEVKALEKALEEVEKNVVAMRCLLCGD 60

Query: 61  GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
           GEVEPN DQV QL  EVCKEDVL L++HKLP LGWEARKDLVHCWS+LLKQKVDS YC V
Sbjct: 61  GEVEPNTDQVSQLVLEVCKEDVLALMIHKLPNLGWEARKDLVHCWSVLLKQKVDSKYCSV 120

Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
           ++IENHFELLDFLVVCYDNKE+AL+CG+MLRECIKF SLA+YILESASFELFFKFVELP 
Sbjct: 121 EYIENHFELLDFLVVCYDNKEIALNCGLMLRECIKFSSLAKYILESASFELFFKFVELPN 180

Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
           FDVASDAFSTFKDLL KH TVV+EYLTAHYDEFFDLYEKLLTS NYVTRRQSLKLLS+FL
Sbjct: 181 FDVASDAFSTFKDLLIKHDTVVAEYLTAHYDEFFDLYEKLLTSPNYVTRRQSLKLLSDFL 240

Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLK 267
           LEPPNSHIMKRYILEVR+LKVMMTLLK
Sbjct: 241 LEPPNSHIMKRYILEVRYLKVMMTLLK 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100291|ref|XP_002311818.1| predicted protein [Populus trichocarpa] gi|222851638|gb|EEE89185.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110494|ref|XP_002315537.1| predicted protein [Populus trichocarpa] gi|222864577|gb|EEF01708.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454434|ref|XP_004144960.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] gi|449471842|ref|XP_004153424.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] gi|449523591|ref|XP_004168807.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297807935|ref|XP_002871851.1| Mo25 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317688|gb|EFH48110.1| Mo25 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359806928|ref|NP_001241580.1| uncharacterized protein LOC100815605 [Glycine max] gi|255645011|gb|ACU23005.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18419772|ref|NP_568368.1| Mo25-like protein [Arabidopsis thaliana] gi|21593944|gb|AAM65898.1| unknown [Arabidopsis thaliana] gi|124301170|gb|ABN04837.1| At5g18940 [Arabidopsis thaliana] gi|332005248|gb|AED92631.1| Mo25-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145362644|ref|NP_974807.2| Mo25-like protein [Arabidopsis thaliana] gi|332005247|gb|AED92630.1| Mo25-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110735671|dbj|BAE99816.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359477465|ref|XP_002279174.2| PREDICTED: calcium-binding protein 39-like isoform 1 [Vitis vinifera] gi|297736958|emb|CBI26159.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
TAIR|locus:2144990345 AT5G18940 [Arabidopsis thalian 0.992 0.773 0.823 1.8e-117
UNIPROTKB|E2R8W7341 CAB39 "Uncharacterized protein 0.981 0.774 0.453 4.3e-54
UNIPROTKB|Q29RI6341 CAB39 "Calcium-binding protein 0.981 0.774 0.453 5.5e-54
UNIPROTKB|Q9Y376341 CAB39 "Calcium-binding protein 0.981 0.774 0.453 5.5e-54
RGD|1306390341 Cab39 "calcium binding protein 0.981 0.774 0.453 5.5e-54
MGI|MGI:107438341 Cab39 "calcium binding protein 0.981 0.774 0.453 8.9e-54
ZFIN|ZDB-GENE-041114-204334 cab39l "calcium binding protei 0.936 0.754 0.457 3e-53
ZFIN|ZDB-GENE-040426-2897343 cab39l1 "calcium binding prote 0.985 0.772 0.423 3e-53
UNIPROTKB|E1C407341 CAB39 "Uncharacterized protein 0.970 0.765 0.455 1.2e-51
ZFIN|ZDB-GENE-040625-158341 cab39 "calcium binding protein 0.981 0.774 0.430 1.2e-51
TAIR|locus:2144990 AT5G18940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 220/267 (82%), Positives = 244/267 (91%)

Query:     1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
             MSFSFFKPSRPKTP EVVKA + SLMALD KTVVEVKALEKA+EE+EKNF ++R +LSGD
Sbjct:     1 MSFSFFKPSRPKTPQEVVKAIRDSLMALDTKTVVEVKALEKALEEVEKNFSSLRGILSGD 60

Query:    61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
             GE EPNADQ +QLA E CKEDV+ L++HKL ILGWE RKDL+HCWSILLKQKV  TYCCV
Sbjct:    61 GETEPNADQAVQLALEFCKEDVVSLVIHKLHILGWETRKDLLHCWSILLKQKVGDTYCCV 120

Query:   121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
             Q+ E HFELLD LVVCYDNKE+ALHCG MLRECIKFPSLA+YILESA FELFFKFVELP 
Sbjct:   121 QYFEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFFKFVELPN 180

Query:   181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
             FDVASDAFSTFKDLLTKH +VVSE+LT+HY EFFD+YE+LLTSSNYVTRRQSLKLLS+FL
Sbjct:   181 FDVASDAFSTFKDLLTKHDSVVSEFLTSHYTEFFDVYERLLTSSNYVTRRQSLKLLSDFL 240

Query:   241 LEPPNSHIMKRYILEVRFLKVMMTLLK 267
             LEPPNSHIMK++ILEVR+LKV+MTLLK
Sbjct:   241 LEPPNSHIMKKFILEVRYLKVIMTLLK 267
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|E2R8W7 CAB39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RI6 CAB39 "Calcium-binding protein 39" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y376 CAB39 "Calcium-binding protein 39" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306390 Cab39 "calcium binding protein 39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107438 Cab39 "calcium binding protein 39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-204 cab39l "calcium binding protein 39-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2897 cab39l1 "calcium binding protein 39, like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C407 CAB39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-158 cab39 "calcium binding protein 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
pfam08569334 pfam08569, Mo25, Mo25-like 1e-107
>gnl|CDD|219909 pfam08569, Mo25, Mo25-like Back     alignment and domain information 
 Score =  313 bits (804), Expect = e-107
 Identities = 124/268 (46%), Positives = 174/268 (64%), Gaps = 6/268 (2%)

Query: 1   MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
           M F F K   PKTP ++V++ K  L+ LD    +     EKA EE+ KN   ++ +L GD
Sbjct: 1   MPFLFKK--SPKTPSDLVRSLKDQLLKLD---SLSSDNAEKAQEEVSKNLSQLKEILVGD 55

Query: 61  GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CC 119
            + EP  +Q+ QLA E+  ED+L LL+  L  L +E RKD+   +S +L++ +D+     
Sbjct: 56  TDAEPTQEQIAQLAQEMYSEDLLYLLIDNLHKLDFETRKDVALIFSNILRRSIDNNSRPT 115

Query: 120 VQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELP 179
           V ++  H E+L  L+  Y+  E+AL CG MLRECIK  +LA+ IL S  F  FFK+V+L 
Sbjct: 116 VDYLVAHPEILSLLLKGYETSEIALTCGDMLRECIKHEALAKIILYSPQFWKFFKYVQLS 175

Query: 180 TFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEF 239
           TF++A+DAFSTFKDLLT H  +V+E+L  +YD FF ++ KLL S+NYVT+RQSLKLL E 
Sbjct: 176 TFEIATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFNKLLQSTNYVTKRQSLKLLGEL 235

Query: 240 LLEPPNSHIMKRYILEVRFLKVMMTLLK 267
           LL+  NS +M +YI     LK+MM LL+
Sbjct: 236 LLDRANSKVMTKYISSPENLKLMMNLLR 263

Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner. Length = 334

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 269
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 100.0
KOG1566342 consensus Conserved protein Mo25 [Function unknown 100.0
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 86.35
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 85.61
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 85.41
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information 
Probab=100.00  E-value=8.1e-100  Score=716.88  Aligned_cols=263  Identities=52%  Similarity=0.809  Sum_probs=233.7

Q ss_pred             CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 024314            1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE   80 (269)
Q Consensus         1 Msflf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~   80 (269)
                      |+||||++  ||||+|+||+++|+|.+|+.   ..+++++|++|||+|+|++||.||+|++|++|+||+|+||++|+|++
T Consensus         1 M~FlF~k~--~KtP~ElVr~l~e~L~~L~~---~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~   75 (335)
T PF08569_consen    1 MSFLFKKK--PKTPAELVRSLREALEKLDS---KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS   75 (335)
T ss_dssp             -------------HHHHHHHHHHHHHHHHS---S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred             CCCCcCCC--CCCHHHHHHHHHHHHHHhcc---ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence            99999997  99999999999999999971   13456799999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCcc-chhhhhhcc-HHHHHHHHHhccCcchhhhhhHHHHHHhhhHH
Q 024314           81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIENH-FELLDFLVVCYDNKEVALHCGIMLRECIKFPS  158 (269)
Q Consensus        81 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLREcik~e~  158 (269)
                      |++..||.+|+.||||+|||+++||++++|+++++++ |+|+||.+| |||+++|+.||++||+|++||.|||||+|||+
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~  155 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES  155 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999 999999999 99999999999999999999999999999999


Q ss_pred             HHHHHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHH
Q 024314          159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSE  238 (269)
Q Consensus       159 la~~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLge  238 (269)
                      +|++||++++||+||+|++.|+||||||||+||+|+||+||++||+||.+|||+||++|++||+|+||||||||||||||
T Consensus       156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e  235 (335)
T PF08569_consen  156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE  235 (335)
T ss_dssp             HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHhhCChhhHHHHHHhccc
Q 024314          239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKV  268 (269)
Q Consensus       239 lLldr~N~~vM~rYis~~~NLkl~M~LLr~  268 (269)
                      ||+||+|++||+|||+||+|||+||+|||+
T Consensus       236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d  265 (335)
T PF08569_consen  236 LLLDRSNFNVMTRYISSPENLKLMMNLLRD  265 (335)
T ss_dssp             HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred             HHHchhHHHHHHHHHCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999986

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
3zhp_A340 Human Mst3 (stk24) In Complex With Mo25beta Length 9e-55
3gni_A341 Structure Of Strad And Mo25 Length = 341 6e-54
1upk_A341 Crystal Structure Of Mo25 In Complex With A C-Termi 1e-47
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (533), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 112/256 (43%), Positives = 165/256 (64%), Gaps = 4/256 (1%)
Query: 12  KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
           K P E+VK  K +L  L+ +     K  +KA EE+ K+   M+ +L G  E EP  + V 
Sbjct: 15  KNPAEIVKILKDNLAILEKQD----KKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVA 70
Query: 72  QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
           QLA E+    +L+ L+  L ++ +E +KD+   ++ +L++++ +    V++I  H  +L 
Sbjct: 71  QLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILF 130
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
            L+  Y+  ++AL CGIMLRECI+   LA+ IL S  F  FFK+VEL TFD+ASDAF+TF
Sbjct: 131 MLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATF 190
Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
           KDLLT+H  +V+++L  +YD  F+ YEKLL S NYVT+RQSLKLL E +L+  N  IM +
Sbjct: 191 KDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTK 250
Query: 252 YILEVRFLKVMMTLLK 267
           YI +   LK+MM LL+
Sbjct: 251 YISKPENLKLMMNLLR 266
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25 Length = 341 Back     alignment and structure
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal Peptide Of Strad Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 1e-102
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Length = 341 Back     alignment and structure
 Score =  301 bits (772), Expect = e-102
 Identities = 121/267 (45%), Positives = 173/267 (64%), Gaps = 3/267 (1%)

Query: 1   MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
           M F F K    K+P ++VK  K S+  L+ + + + KA EKA EE+ KN V M+ +L G 
Sbjct: 1   MPFPFGK--SHKSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGT 57

Query: 61  GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
            E EP  + V QLA E+    +L  LV  L ++ +E +KD+   ++ +L++++ +    V
Sbjct: 58  NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 117

Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
           ++I     +L  L+  Y++ E+AL+CGIMLRECI+   LA+ IL S  F  FF++VE+ T
Sbjct: 118 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 177

Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
           FD+ASDAF+TFKDLLT+H  + +E+L  HYD FF  YEKLL S NYVT+RQSLKLL E L
Sbjct: 178 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237

Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLK 267
           L+  N  IM +YI +   LK+MM LL+
Sbjct: 238 LDRHNFTIMTKYISKPENLKLMMNLLR 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 100.0
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 95.9
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.87
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.83
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.56
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.5
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 94.77
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 94.12
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 93.06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 92.99
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 92.42
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 91.92
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 90.2
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 89.98
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 89.18
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 89.14
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 85.33
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 85.28
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 83.78
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 83.36
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 83.34
2x19_B963 Importin-13; nuclear transport, protein transport; 82.8
1qgr_A 876 Protein (importin beta subunit); transport recepto 81.96
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 81.47
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 80.69
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 80.63
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 80.11
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
Probab=100.00  E-value=3.7e-104  Score=743.36  Aligned_cols=264  Identities=45%  Similarity=0.722  Sum_probs=241.3

Q ss_pred             CccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhc
Q 024314            2 SFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKED   81 (269)
Q Consensus         2 sflf~~~~r~ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~d   81 (269)
                      ++-||++  ||||+|+||+++|+|.+|+.++. .+++.+|++|||+|+|++||.||||++|+||+||+|+||++|+|++|
T Consensus         2 ~m~F~~~--~ktP~elVr~l~d~l~~l~~~~~-~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d   78 (341)
T 1upk_A            2 PFPFGKS--HKSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG   78 (341)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence            3338877  99999999999999999986431 22344789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHhccCcchhhhhhHHHHHHhhhHHHHH
Q 024314           82 VLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLAR  161 (269)
Q Consensus        82 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLREcik~e~la~  161 (269)
                      ++++||.+||+||||+||||++||++++|+++|+++|+|+||++||||+++|++||++||+|++||+|||||||||++|+
T Consensus        79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~  158 (341)
T 1upk_A           79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK  158 (341)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcchhHHHHhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhc
Q 024314          162 YILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL  241 (269)
Q Consensus       162 ~iL~~~~f~~fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLl  241 (269)
                      +||+|++||+||+|++.|+||||||||+||||+||+||++||+||++|||+||++||+||+|+||||||||||||||||+
T Consensus       159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl  238 (341)
T 1upk_A          159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL  238 (341)
T ss_dssp             HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhhCChhhHHHHHHhccc
Q 024314          242 EPPNSHIMKRYILEVRFLKVMMTLLKV  268 (269)
Q Consensus       242 dr~N~~vM~rYis~~~NLkl~M~LLr~  268 (269)
                      ||+|++||+|||+|++|||+|||||||
T Consensus       239 dr~N~~vM~~Yis~~~nLkl~M~LL~d  265 (341)
T 1upk_A          239 DRHNFTIMTKYISKPENLKLMMNLLRD  265 (341)
T ss_dssp             SGGGHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHhCCHHHHHHHHHHhcC
Confidence            999999999999999999999999997
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 269
d1upka_330 a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) 1e-112
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 330 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  324 bits (832), Expect = e-112
 Identities = 117/256 (45%), Positives = 169/256 (66%), Gaps = 1/256 (0%)

Query: 12  KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
           K+P ++VK  K S+  L+ + + + KA EKA EE+ KN V M+ +L G  E EP  + V 
Sbjct: 1   KSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGTNEKEPQTEAVA 59

Query: 72  QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
           QLA E+    +L  LV  L ++ +E +KD+   ++ +L++++ +    V++I     +L 
Sbjct: 60  QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 119

Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
            L+  Y++ E+AL+CGIMLRECI+   LA+ IL S  F  FF++VE+ TFD+ASDAF+TF
Sbjct: 120 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF 179

Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
           KDLLT+H  + +E+L  HYD FF  YEKLL S NYVT+RQSLKLL E LL+  N  IM +
Sbjct: 180 KDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTK 239

Query: 252 YILEVRFLKVMMTLLK 267
           YI +   LK+MM LL+
Sbjct: 240 YISKPENLKLMMNLLR 255

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.89
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 95.29
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.28
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 92.65
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 92.56
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 92.53
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 84.28
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-103  Score=730.71  Aligned_cols=256  Identities=45%  Similarity=0.729  Sum_probs=242.8

Q ss_pred             CChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhCC
Q 024314           12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLP   91 (269)
Q Consensus        12 ktP~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~L~~mK~il~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~   91 (269)
                      |||+|+||+++|+|.+|+.++. .+++++|++|||+|+|++||.||||++|+||+||+|+||++|+|++|++++||.+||
T Consensus         1 ktP~elVr~~~d~l~~l~~~~~-~~~k~ek~~ee~~K~l~~mK~iL~G~~e~ep~~e~~~qL~~e~~~~d~l~~Li~~L~   79 (330)
T d1upka_           1 KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ   79 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhChHHHHHHhCC
Confidence            7999999999999999997653 456789999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhhHHHHHHHHhhcccCCccchhhhhhccHHHHHHHHHhccCcchhhhhhHHHHHHhhhHHHHHHHhcchhHHH
Q 024314           92 ILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFEL  171 (269)
Q Consensus        92 ~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLREcik~e~la~~iL~~~~f~~  171 (269)
                      +||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||.|||||||||++|++||+|++||+
T Consensus        80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~  159 (330)
T d1upka_          80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYD  159 (330)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred             CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCchhhhchHHHHHHHHhcchhhHHHHHHhhHHHHHHHHHhhhcCCCccchhchhhhhHHhhcCCCCHHHHHH
Q 024314          172 FFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR  251 (269)
Q Consensus       172 fF~yv~~~~FeiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~r  251 (269)
                      ||+|++.|+||||||||+||||+||+||++|||||++|||+||.+||+||+|+||||||||||||||+|+||+|++||+|
T Consensus       160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~  239 (330)
T d1upka_         160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTK  239 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCChhhHHHHHHhccc
Q 024314          252 YILEVRFLKVMMTLLKV  268 (269)
Q Consensus       252 Yis~~~NLkl~M~LLr~  268 (269)
                      ||+|++|||+|||||||
T Consensus       240 Yvs~~~nLkl~M~LLrd  256 (330)
T d1upka_         240 YISKPENLKLMMNLLRD  256 (330)
T ss_dssp             HTTCHHHHHHHHHHTTC
T ss_pred             HhCCHHHHHHHHHHhcC
Confidence            99999999999999997
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure