Citrus Sinensis ID: 024323

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEHHHHccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEccccccEEcccccEEHHHHHHHHHHcEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEccccEEEHEHHHEEEEccEEEEcc
Coil and Loop (DISEMBL)
mkpsslhnvylrFKPLLLMVLAQLSYTFLYFITEasfnhgmnphvYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTvykgpaarnpghppihiqrnniIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVArkpadwriglnIDLWSTIYGVSWRIRQDLYCD
Flexible Loop (DISEMBL)
MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Low Complexity Region (SEG)
MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPtfvasvvntvaavtfviavvLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Disordered region (IsUnstruct)
******HNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYC*
Disordered Region (DISOPRED)
************FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNP***************QWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Disordered Region (DISEMBL)
MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Disordered Region (DISPRO)
*****LHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG*************EQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLWSTIYGVSWRIRQDLYCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q501F8	373	WAT1-related protein At4g	yes	no	0.910	0.656	0.378	7e-52
O80638	374	WAT1-related protein At2g	no	no	0.907	0.652	0.407	6e-51
Q9LPF1	370	WAT1-related protein At1g	no	no	0.936	0.681	0.382	2e-50
Q9FL41	402	WAT1-related protein At5g	no	no	0.940	0.629	0.378	2e-49
F4HZQ7	389	WAT1-related protein At1g	no	no	0.903	0.624	0.349	3e-47
Q9SUF1	384	WAT1-related protein At4g	no	no	0.910	0.638	0.36	3e-45
Q9LXX8	377	WAT1-related protein At3g	no	no	0.873	0.623	0.368	5e-45
F4IJ08	394	WAT1-related protein At2g	no	no	0.873	0.596	0.345	2e-42
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.918	0.65	0.344	4e-42
Q9FGG3	359	WAT1-related protein At5g	no	no	0.903	0.676	0.383	1e-40

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 154/251 (61%), Gaps = 6/251 (2%)

Query: 12  RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
           + KP++ ++  Q  Y  +Y IT  SF HGMN  +  TYRH+VA I + PFA  LERKIRP
Sbjct: 8   KLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRP 67

Query: 72  KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETL 131
           K+T  LFL I  L  +   L  N+Y+  ++ TS T+ ++ VN + A+TF++AV+ R+ET+
Sbjct: 68  KMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETV 127

Query: 132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAAR--NPGHPPIHIQRNNIIQE----QWLK 185
           +L+  R +AKV+GT +++ G  +MT+YKGPA       H  +H   +    E     W+ 
Sbjct: 128 NLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVT 187

Query: 186 GSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRI 245
           G+   + S  TW+  +I+Q+ TLK+YPA+LSL  W+C +G   + + ++I+ R  + W++
Sbjct: 188 GTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRDVSAWKV 247

Query: 246 GLNIDLWSTIY 256
           G++    + +Y
Sbjct: 248 GMDSGTLAAVY 258

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  201 bits (510), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 4/248 (1%)

Query: 14  KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
           KP + +V  Q  Y  L  I + + N GM+PHV  +YRHIVA I + PFAYFL+RKIRPK+
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 74  TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDL 133
           TL++F +I +L L+  T+  N+Y+  ++YTS TF A++ N + A  F++A + RLE +++
Sbjct: 67  TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQR---NNIIQEQWLKGSFLT 190
           +     AK+LGT+V++ G  +MTV KGP    P   P  I +   N  +++   KG+ L 
Sbjct: 127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query: 191 IASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR-KPADWRIGLNI 249
               I W+    +QAITLK YP +LSLT ++CFLG+ +S +  + + R  P+ W I L+ 
Sbjct: 187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDS 246

Query: 250 DLWSTIYG 257
            L + +YG
Sbjct: 247 KLLAAVYG 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 159/259 (61%), Gaps = 7/259 (2%)

Query: 1   MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFP 60
           MK  S+     + KP+L ++  Q  Y  +Y IT  SF HGM+  V  TYRH+VA + M P
Sbjct: 1   MKGGSME----KIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAP 56

Query: 61  FAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTF 120
           FA   ERKIRPK+TLA+F  +  L ++   +  N+Y+  L+ TS ++ ++  N + AVTF
Sbjct: 57  FALMFERKIRPKMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTF 116

Query: 121 VIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAAR--NPGHPPIHIQRNNI 178
           ++A++ RLET++ R    +AKV+GT++++ G  IMT+YKGPA       H   H   ++ 
Sbjct: 117 ILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSST 176

Query: 179 -IQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVA 237
              + W+ G+   + S  TW+A +I+Q+ TLK YPA+LSL T +C +G   +A+ ++I+ 
Sbjct: 177 PTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMV 236

Query: 238 RKPADWRIGLNIDLWSTIY 256
           R P+ W+IG++    + +Y
Sbjct: 237 RDPSAWKIGMDSGTLAAVY 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 161/264 (60%), Gaps = 11/264 (4%)

Query: 4   SSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAY 63
           SS  +     KP   M+  Q  Y  +  IT+ S N GM+ +V V YRH +A   + PFA+
Sbjct: 7   SSCESFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAF 66

Query: 64  FLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIA 123
           F ERK +PK+T ++F+++F+L L+G  +  N Y+  L+YTSPTF  ++ N + A+TF++A
Sbjct: 67  FFERKAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILA 126

Query: 124 VVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNN------ 177
           V+ R+E LDL+     AK+ GT+V++AG  +MT+YKGP         +HIQ ++      
Sbjct: 127 VLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTS 186

Query: 178 ----IIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPA-QLSLTTWMCFLGAAQSAVF 232
                  +++LKGS L I +++ W++++++QA  LK Y   QLSLTT +CF+G  Q+   
Sbjct: 187 SKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAV 246

Query: 233 TVIVARKPADWRIGLNIDLWSTIY 256
           T ++   P+ WRIG +++L +  Y
Sbjct: 247 TFVMEHNPSAWRIGWDMNLLAAAY 270

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 148/255 (58%), Gaps = 12/255 (4%)

Query: 14  KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
           KP L M+  Q  Y  +Y IT  S  HGMN +V   YRH +A   + PFA F ERKIRPK+
Sbjct: 10  KPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPKM 69

Query: 74  TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDL 133
           T  +FL+I +L  +   L  N+Y+  + YTS TF ++  N + A+TFV+A++ RLE+++ 
Sbjct: 70  TFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNF 129

Query: 134 RNARGMAKVLGTLVSLAGVTIMTVYKGP------------AARNPGHPPIHIQRNNIIQE 181
           +  R +AKV+GT+++++G  +MT+YKGP               +             + +
Sbjct: 130 KKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDK 189

Query: 182 QWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPA 241
            W+ G+ + +  +  W+  +I+Q+ TLK+YPA+LSLTT +C +G  +    +++  R  +
Sbjct: 190 HWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLS 249

Query: 242 DWRIGLNIDLWSTIY 256
            W+IG + +L++  Y
Sbjct: 250 AWKIGFDSNLFAAAY 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 146/250 (58%), Gaps = 5/250 (2%)

Query: 12  RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
           + +P LLM+  Q      Y +  A+ N G N +V + YR++VA + + PFA   ERK+RP
Sbjct: 10  KLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRP 69

Query: 72  KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETL 131
           K+TL++  +I  L  +   L     +  +  TS T+ ++++N + +VTF+IA +LR+E +
Sbjct: 70  KMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKV 129

Query: 132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRN---NIIQEQ--WLKG 186
           ++   R  AK++GTLV L G  +MT+YKGP    P   P   Q+N   N  Q+   W+ G
Sbjct: 130 NIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVG 189

Query: 187 SFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIG 246
           + L +   + WS  Y++Q+IT+K YPA LSL+  +C  GA QS    ++V R P+ W +G
Sbjct: 190 TLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVG 249

Query: 247 LNIDLWSTIY 256
            +  L++ +Y
Sbjct: 250 WDARLFAPLY 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 151/250 (60%), Gaps = 15/250 (6%)

Query: 14  KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
           KP   MV  Q  Y  +  +T+   + GM+ +V V YR+  A  A+ PFA   ERK+RPK+
Sbjct: 10  KPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRPKM 69

Query: 74  TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDL 133
           T  +F++IFVL+L+G  +  N+Y+A L+ TSPTF  +V N V A+TF+I+++ R+E +++
Sbjct: 70  TFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEKVEM 129

Query: 134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNII-------QEQWLKG 186
           R  R  AKV+GTLV + G  +M ++K         P I   R+++         E +LK 
Sbjct: 130 RKVRFQAKVVGTLVIVVGAMLMILFK--------IPLITFLRSHLTGHALSPAGEDYLKA 181

Query: 187 SFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIG 246
           +   + +S +W++ +++QA TLKRY + LSL+T +CF+G  QS   T ++    + W IG
Sbjct: 182 TVFLLIASFSWASFFVLQAATLKRYSSHLSLSTMVCFMGTLQSTALTFVMEPNLSAWNIG 241

Query: 247 LNIDLWSTIY 256
            +++L ++ Y
Sbjct: 242 FDMNLLASAY 251

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 148/249 (59%), Gaps = 14/249 (5%)

Query: 14  KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
           KP   MV  Q  Y  +  +T+   + GM+ +V V YR+  A  A+ PFA   ERK+R K+
Sbjct: 10  KPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRSKM 69

Query: 74  TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDL 133
           T  +F+ IF+L+L+G  +  N+Y+  L+ TSPTF ++V N V A+T ++A + R+E +++
Sbjct: 70  TFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVEM 129

Query: 134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQ------EQWLKGS 187
           R  R + KV+GTLV++ G  +M  YKGP         I+  R+++          +LK +
Sbjct: 130 RKVRCLVKVMGTLVTVVGSILMIFYKGPF--------INFFRSHLTAASSPPTADYLKAA 181

Query: 188 FLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGL 247
              + +S++W++ +++QA TLK+Y A LS++T +CF+G  QS     ++   P+   IG 
Sbjct: 182 VFLLLASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSALNIGF 241

Query: 248 NIDLWSTIY 256
           +++L ++ Y
Sbjct: 242 DMNLLASAY 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 149/267 (55%), Gaps = 20/267 (7%)

Query: 1   MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFP 60
           M+     +   + +P + MV+ Q+    +  +++A  N GM+ +V V YRH VA I M P
Sbjct: 1   MEEVKKRDCMEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAP 60

Query: 61  FAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTF 120
           FA++ ++K+RPK+TL +F +I +L L+   +  N+Y+  ++YT+ TF  ++ N + A+TF
Sbjct: 61  FAFYFDKKVRPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITF 120

Query: 121 VIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGP----------AARNPGHPP 170
           V+A +  LE + LR  R   KV+GTL ++ G  IMT+ KGP          +A N     
Sbjct: 121 VLAYIFGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTD 180

Query: 171 IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQ-S 229
           IH           +KG+ L      +++   I+QAITL+ YPA+LSLT W+C +G  + +
Sbjct: 181 IH---------SAIKGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGT 231

Query: 230 AVFTVIVARKPADWRIGLNIDLWSTIY 256
           AV  V+    P+ W IG +  L +  Y
Sbjct: 232 AVALVMEKGNPSAWAIGWDTKLLTATY 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGG3|WTR45_ARATH WAT1-related protein At5g64700 OS=Arabidopsis thaliana GN=At5g64700 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 147/253 (58%), Gaps = 10/253 (3%)

Query: 14  KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
           KP L++ + Q+ YT ++ I++A FN GMN  V+V YR   A I + P A+F ERK  P L
Sbjct: 7   KPYLMVTIIQVIYTIMFLISKAVFNGGMNTFVFVFYRQAFATIFLAPLAFFFERKSAPPL 66

Query: 74  TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDL 133
           +   F++IF+LSL GVTL+L++   +L YTS T  A+   ++ A+TF +A++  +E L +
Sbjct: 67  SFVTFIKIFMLSLFGVTLSLDLNGIALSYTSATLAAATTASLPAITFFLALLFGMERLKV 126

Query: 134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPI-----HIQRNNIIQ-----EQW 183
           ++ +G AK++G  V + GV I+ +YKGP  + P  P       H  RNN          W
Sbjct: 127 KSIQGTAKLVGITVCMGGVIILAIYKGPLLKLPLCPHFYHGQEHPHRNNPGHVSGGSTSW 186

Query: 184 LKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADW 243
           LKG  L I S+I W    ++Q   LK YP++L  TT  C L + QS V  + + R  + W
Sbjct: 187 LKGCVLMITSNILWGLWLVLQGRVLKVYPSKLYFTTLHCLLSSIQSFVIAIALERDISAW 246

Query: 244 RIGLNIDLWSTIY 256
           ++G N+ L + IY
Sbjct: 247 KLGWNLRLVAVIY 259

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
225433049	368	PREDICTED: auxin-induced protein 5NG4 [V	0.947	0.692	0.741	1e-102
356535430	354	PREDICTED: auxin-induced protein 5NG4 [G	0.914	0.694	0.724	1e-100
255576820	370	Auxin-induced protein 5NG4, putative [Ri	0.955	0.694	0.682	1e-97
388500472	357	unknown [Medicago truncatula]	0.940	0.708	0.678	8e-95
297744123	364	unnamed protein product [Vitis vinifera]	0.910	0.673	0.682	2e-92
356533791	346	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.910	0.708	0.678	5e-91
449449012	360	PREDICTED: auxin-induced protein 5NG4-li	0.955	0.713	0.602	7e-87
449518053	273	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.959	0.945	0.6	2e-86
218192100	390	hypothetical protein OsI_10035 [Oryza sa	0.940	0.648	0.597	2e-86
108706201	374	Integral membrane protein DUF6 containin	0.940	0.676	0.601	2e-86

>gi|225433049|ref|XP_002280977.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296083618|emb|CBI23607.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/255 (74%), Positives = 214/255 (83%)

Query: 2   KPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPF 61
           + S L ++Y RFKP LLM LAQ  YTFLYFITEASFNHGMNPHVY+TYRHIV G+  FPF
Sbjct: 4   EGSKLSSIYRRFKPHLLMALAQFGYTFLYFITEASFNHGMNPHVYITYRHIVGGLVTFPF 63

Query: 62  AYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFV 121
           AYFLERK+RPKLTLALF+E+F+LSL+GV L+LNMYFASLRYTSPTF+ASVVNT+A++TF+
Sbjct: 64  AYFLERKVRPKLTLALFVELFILSLLGVGLSLNMYFASLRYTSPTFIASVVNTIASLTFI 123

Query: 122 IAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQE 181
           IAVVLR+E LD RN RG+AKVLGTLVSLAGV  MT+YKGP  ++   P IHIQ N  I E
Sbjct: 124 IAVVLRMEVLDFRNPRGIAKVLGTLVSLAGVMTMTLYKGPIMKSLWDPLIHIQGNTTIHE 183

Query: 182 QWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPA 241
            WLKGS LT+AS +TWS  YIMQAITLKRYPAQLSLTTWM F+GAAQSAVFTV V    A
Sbjct: 184 NWLKGSILTVASCVTWSIWYIMQAITLKRYPAQLSLTTWMSFIGAAQSAVFTVCVEHSRA 243

Query: 242 DWRIGLNIDLWSTIY 256
            W IG NIDLWST+Y
Sbjct: 244 AWTIGFNIDLWSTVY 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535430|ref|XP_003536248.1| PREDICTED: auxin-induced protein 5NG4 [Glycine max]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/247 (72%), Positives = 208/247 (84%), Gaps = 1/247 (0%)

Query: 12  RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
             KP LLMVL Q+ YTFLYFITEASFNHGM+P+VYVTYRHIVA + MFPFAYFLER  RP
Sbjct: 14  ELKPHLLMVLVQVGYTFLYFITEASFNHGMSPYVYVTYRHIVAAVVMFPFAYFLERNARP 73

Query: 72  KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETL 131
           KLT ALF+EIFVLSL+GV++TLNMYFASL+YT+PTFVAS++NT+A++TF+IAV LR E L
Sbjct: 74  KLTFALFMEIFVLSLLGVSVTLNMYFASLKYTNPTFVASMINTIASLTFIIAVALRFEVL 133

Query: 132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI-QRNNIIQEQWLKGSFLT 190
           DLRN RG+AKV+GT++SLAGV IMT+YKGP  RN  HP IHI  ++  I E WLKGS LT
Sbjct: 134 DLRNPRGIAKVIGTIISLAGVLIMTLYKGPVMRNLWHPLIHIPGKSAAINEDWLKGSILT 193

Query: 191 IASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNID 250
           ++S +TWS  YIMQA TLKRYPAQLSLTTWM F+GAAQSA FTVIV    + W IGLN+D
Sbjct: 194 VSSCVTWSLWYIMQASTLKRYPAQLSLTTWMSFVGAAQSAAFTVIVEHNSSAWTIGLNVD 253

Query: 251 LWSTIYG 257
           LWSTIYG
Sbjct: 254 LWSTIYG 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576820|ref|XP_002529296.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223531220|gb|EEF33065.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/258 (68%), Positives = 206/258 (79%), Gaps = 1/258 (0%)

Query: 1   MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFP 60
           +K  +  ++  RF+P LLM  AQ+ YTFLY ITEASFN GMNPHVY+TYRH+VA + M P
Sbjct: 3   LKAYTCGHLCKRFRPHLLMFFAQVGYTFLYLITEASFNRGMNPHVYITYRHVVASVVMLP 62

Query: 61  FAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTF 120
            AYF ERK RPK+TLALF+EIF+LSL+GV+LTLNMY+ASLRYTSPTFVASVVNT+AA+ F
Sbjct: 63  IAYFAERKQRPKMTLALFVEIFILSLLGVSLTLNMYYASLRYTSPTFVASVVNTIAALAF 122

Query: 121 VIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNII- 179
           VIA+ LRLE+LDLRN RG+AK+LGTLVSLAGV  MT+YKGP  +N    PIHI+ N    
Sbjct: 123 VIAIALRLESLDLRNPRGLAKLLGTLVSLAGVMTMTLYKGPKMKNLSVTPIHIEGNTASN 182

Query: 180 QEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK 239
            E WLKGS LT+AS ITWS  YIMQA+TLKRYPAQLSLT WM  +GAAQSA FTVIV  +
Sbjct: 183 HENWLKGSILTVASCITWSVWYIMQAVTLKRYPAQLSLTAWMSIVGAAQSAFFTVIVEHR 242

Query: 240 PADWRIGLNIDLWSTIYG 257
            A W IG N+D WS +YG
Sbjct: 243 KAAWTIGFNVDFWSILYG 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500472|gb|AFK38302.1| unknown [Medicago truncatula]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 173/255 (67%), Positives = 206/255 (80%), Gaps = 2/255 (0%)

Query: 5   SLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYF 64
           SL  VY  FKP LLMVL Q+ YT ++FIT+ASFNHGM+P+VYVTYRH+VAGIAMFPFAYF
Sbjct: 7   SLLLVYREFKPHLLMVLTQVGYTLIFFITQASFNHGMSPYVYVTYRHVVAGIAMFPFAYF 66

Query: 65  LERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAV 124
           LER  RPKLT AL +EIFVLS +G++L++N+YFASL+YTSPTF+AS+ NT+A++TF+IAV
Sbjct: 67  LERSARPKLTFALLVEIFVLSALGISLSINLYFASLKYTSPTFLASMYNTIASLTFIIAV 126

Query: 125 VLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNI-IQEQW 183
            LR E +DLRN RG AKVLGTL+SLAGV  MT+YKGP  RN   P IHIQ+ +    E W
Sbjct: 127 ALRFEVIDLRNPRGTAKVLGTLISLAGVMTMTLYKGPIMRNLWGPLIHIQQKSASTHESW 186

Query: 184 LKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK-PAD 242
           LKGS +TI+  +T S  YIMQA TLKRYPAQLSLTTWMCF+GA QSAVFT+IV    P+ 
Sbjct: 187 LKGSLVTISCCVTTSIGYIMQASTLKRYPAQLSLTTWMCFMGAVQSAVFTIIVEHDNPSA 246

Query: 243 WRIGLNIDLWSTIYG 257
           W IG NIDLWS +YG
Sbjct: 247 WIIGFNIDLWSILYG 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744123|emb|CBI37093.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/246 (68%), Positives = 192/246 (78%), Gaps = 1/246 (0%)

Query: 12  RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
           RFKP LLMVL    YT LYF  EA+FNHG+NPHV VTYRH + G+ MFPFAY LERK+RP
Sbjct: 20  RFKPHLLMVLVHTCYTILYFTAEAAFNHGLNPHVMVTYRHFIGGLVMFPFAYVLERKVRP 79

Query: 72  KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETL 131
           KLTLALF EIFVLSL G+ LTLNMYFASL YTSPTF+AS+VNT+A++TFV+A++LRLE L
Sbjct: 80  KLTLALFAEIFVLSLFGIGLTLNMYFASLTYTSPTFLASMVNTIASLTFVMAIILRLEHL 139

Query: 132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTI 191
           D+RN RG+AK+LGTL SL GV IMT  KGP  RN   P IHI RNN + E W KGS LT+
Sbjct: 140 DIRNPRGLAKILGTLFSLVGVMIMTSCKGPVIRNLSSPLIHIGRNN-MHENWTKGSILTV 198

Query: 192 ASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDL 251
           AS ITWS  YIMQA T+KRYPA LS+TTWM F+G AQSAV  VI+  KP  W   +NI L
Sbjct: 199 ASCITWSIWYIMQAFTMKRYPAPLSITTWMNFIGGAQSAVIAVIMQHKPEAWSFSVNIQL 258

Query: 252 WSTIYG 257
           WSTIY 
Sbjct: 259 WSTIYA 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533791|ref|XP_003535442.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 167/246 (67%), Positives = 196/246 (79%), Gaps = 1/246 (0%)

Query: 13  FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPK 72
           FKP LLMVL Q  Y+FLY IT ASF+HGMNP VYVTYRHI+A + MFPFAYFLER  RPK
Sbjct: 15  FKPHLLMVLVQFGYSFLYLITNASFDHGMNPFVYVTYRHILAAVLMFPFAYFLERNARPK 74

Query: 73  LTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLD 132
           LT +LF+EIFVLSL+GV+LT+NM+FASL+YT+PTF+ +++NT+  +TFVIAV  R E LD
Sbjct: 75  LTFSLFMEIFVLSLLGVSLTINMHFASLKYTNPTFIVAMLNTIPTLTFVIAVAFRFELLD 134

Query: 133 LRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI-QRNNIIQEQWLKGSFLTI 191
           L N+RG+AKVLGTL+SLAG  I+ +YKG   RN   P IHI  ++  I E WLKGS LT+
Sbjct: 135 LXNSRGIAKVLGTLISLAGALIIALYKGNLMRNLWRPLIHIPGKSAAINESWLKGSLLTV 194

Query: 192 ASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDL 251
            S +TWS  YIMQA TLKRYPAQLSL TWM F+GAAQSAVFTVIV    + W IGLNIDL
Sbjct: 195 LSCVTWSIWYIMQAATLKRYPAQLSLVTWMSFVGAAQSAVFTVIVEHNRSAWTIGLNIDL 254

Query: 252 WSTIYG 257
           WSTIYG
Sbjct: 255 WSTIYG 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449012|ref|XP_004142259.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/259 (60%), Positives = 193/259 (74%), Gaps = 2/259 (0%)

Query: 1   MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFP 60
           M    L   ++RFKP +L++  Q  YTFLYF  +ASF HGMNPHV++TYR  +A I + P
Sbjct: 2   MNVCFLQVFFIRFKPHILIIFTQFGYTFLYFFVDASFKHGMNPHVHITYRQTLATITLLP 61

Query: 61  FAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTF 120
           FAYFLERK+RP++TLALFLEIFVLSL+GVTL+ N YFASLRYTSPTF+ S++NT+A +TF
Sbjct: 62  FAYFLERKLRPRITLALFLEIFVLSLLGVTLSTNTYFASLRYTSPTFITSMLNTIAGLTF 121

Query: 121 VIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNI-- 178
           +IAVV+RLE ++  N +G+AKV+GTLVSL GV IMT YKGP  RN   P IHIQ      
Sbjct: 122 IIAVVVRLEVVEFDNPKGIAKVMGTLVSLGGVLIMTFYKGPIIRNVCQPLIHIQHKATYH 181

Query: 179 IQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR 238
           + E WLKGS LT++S ++W+  YI+QA TLKRYPA LSLTTWM   GA Q+AV+TV    
Sbjct: 182 LHEDWLKGSLLTVSSCLSWAISYILQAFTLKRYPAPLSLTTWMNLFGAVQTAVYTVSTQH 241

Query: 239 KPADWRIGLNIDLWSTIYG 257
           K   W IG NIDLW+ IY 
Sbjct: 242 KAGVWNIGFNIDLWAIIYA 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518053|ref|XP_004166058.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like, partial [Cucumis sativus]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/260 (60%), Positives = 193/260 (74%), Gaps = 2/260 (0%)

Query: 1   MKPSSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFP 60
           M    L   ++RFKP +L++  Q  YTFLY   +ASF HGMNPHV++TYR  +A I + P
Sbjct: 2   MNVCFLQVFFIRFKPHILIIFTQFGYTFLYXFVDASFKHGMNPHVHITYRQTLATITLLP 61

Query: 61  FAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTF 120
           FAYFLERK+RP++TLALFLEIFVLSL+GVTL+ N YFASLRYTSPTF+ S++NT+A +TF
Sbjct: 62  FAYFLERKLRPRITLALFLEIFVLSLLGVTLSTNTYFASLRYTSPTFITSMLNTIAGLTF 121

Query: 121 VIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNI-- 178
           +IAVV+RLE ++  N +G+AKV+GTLVSL GV IMT YKGP  RN   P IHIQ      
Sbjct: 122 IIAVVVRLEVVEFDNPKGIAKVMGTLVSLGGVLIMTFYKGPIIRNVCQPLIHIQHKATYH 181

Query: 179 IQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR 238
           + E WLKGS LT++S ++W+  YI+QA TLKRYPA LSLTTWM   GA Q+AV+TV    
Sbjct: 182 LHEDWLKGSLLTVSSCLSWAISYILQAFTLKRYPAPLSLTTWMNLFGAVQTAVYTVSTQH 241

Query: 239 KPADWRIGLNIDLWSTIYGV 258
           K   W IG NIDLW+ IY V
Sbjct: 242 KAGVWNIGFNIDLWAIIYAV 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192100|gb|EEC74527.1| hypothetical protein OsI_10035 [Oryza sativa Indica Group]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/256 (59%), Positives = 196/256 (76%), Gaps = 3/256 (1%)

Query: 4   SSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAY 63
           +S+ +++ R+ P  LM+L+QL YT +YFITEA+FN G+NP +YVTYRH+V  + + PFAY
Sbjct: 7   ASMGDLWRRYAPHNLMILSQLCYTLMYFITEAAFNKGLNPFIYVTYRHLVVAVFLAPFAY 66

Query: 64  FLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIA 123
           + E+K+RP++TL LFLEIFVLSL+GV+LTLNMYFASL YTSPTFV SVVNTVA++TFVIA
Sbjct: 67  YQEKKLRPRMTLMLFLEIFVLSLLGVSLTLNMYFASLMYTSPTFVTSVVNTVASITFVIA 126

Query: 124 VVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ---RNNIIQ 180
           +V+R+E +D+R+ RG+AK+ GT+VS AGVT MT+YKG A  +P   PI I        + 
Sbjct: 127 IVVRMEIVDVRSIRGLAKIAGTVVSFAGVTTMTLYKGTAISSPWKAPISIHGGGGGGGVH 186

Query: 181 EQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKP 240
           E WLKGSFL +AS I WS  YI+QA +LKRYPAQLSLT WMC +G  QSAVFT  +  KP
Sbjct: 187 ESWLKGSFLAVASCICWSIWYILQASSLKRYPAQLSLTAWMCTVGGIQSAVFTAFMQHKP 246

Query: 241 ADWRIGLNIDLWSTIY 256
            DWRIG  +  W  +Y
Sbjct: 247 EDWRIGFGLKFWCIVY 262

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108706201|gb|ABF93996.1| Integral membrane protein DUF6 containing protein, expressed [Oryza sativa Japonica Group] gi|215769112|dbj|BAH01341.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624195|gb|EEE58327.1| hypothetical protein OsJ_09421 [Oryza sativa Japonica Group]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/256 (60%), Positives = 196/256 (76%), Gaps = 3/256 (1%)

Query: 4   SSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAY 63
           +S+ +++ R+ P  LM+L+QL YT +YFITEA+FN G+NP +YVTYRH+V  + + PFAY
Sbjct: 7   ASMGDLWRRYAPHNLMILSQLCYTLMYFITEAAFNKGLNPFIYVTYRHLVVAVFLAPFAY 66

Query: 64  FLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIA 123
           + E+K+RP++TL LFLEIFVLSL+GV+LTLNMYFASL YTSPTFV SVVNTVA++TFVIA
Sbjct: 67  YQEKKLRPRMTLMLFLEIFVLSLLGVSLTLNMYFASLMYTSPTFVTSVVNTVASITFVIA 126

Query: 124 VVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ---RNNIIQ 180
           +V+R+E +D+R+ RG+AKV GT+VS AGVT MT+YKG A  +P   PI I        + 
Sbjct: 127 IVVRMEIVDVRSIRGLAKVAGTVVSFAGVTTMTLYKGTAISSPWKAPISIHGGGGGGGVH 186

Query: 181 EQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKP 240
           E WLKGSFL +AS I WS  YI+QA +LKRYPAQLSLT WMC +G  QSAVFT  +  KP
Sbjct: 187 ESWLKGSFLAVASCICWSIWYILQASSLKRYPAQLSLTAWMCTVGGIQSAVFTAFMQHKP 246

Query: 241 ADWRIGLNIDLWSTIY 256
            DWRIG  +  W  +Y
Sbjct: 247 EDWRIGFGLKFWCIVY 262

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.910	0.655	0.381	1.9e-44
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.918	0.662	0.350	5e-44
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.918	0.667	0.370	8.1e-44
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.940	0.629	0.352	7.3e-43
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.910	0.629	0.329	1.8e-39
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.910	0.638	0.332	1.6e-38
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.903	0.676	0.359	2.6e-38
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.895	0.639	0.340	3e-37
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.892	0.609	0.315	2.4e-35
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.895	0.634	0.331	5.8e-34

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 95/249 (38%), Positives = 143/249 (57%)

Query:    13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPK 72
             +KP + +V  Q  Y  L  I + + N GM+PHV  +YRHIVA I + PFAYFL+RKIRPK
Sbjct:     6 WKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPK 65

Query:    73 LTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETLD 132
             +TL++F +I +L L+  T+  N+Y+  ++YTS                      RLE ++
Sbjct:    66 MTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVN 125

Query:   133 LRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPP--IHIQRNNI-IQEQWLKGSFL 189
             ++     AK+LGT+V++ G  +MTV KGP    P   P  IH   +N  +++   KG+ L
Sbjct:   126 VKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASL 185

Query:   190 TIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR-KPADWRIGLN 248
                  I W+    +QAITLK YP +LSLT ++CFLG+ +S +  + + R  P+ W I L+
Sbjct:   186 IAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLD 245

Query:   249 IDLWSTIYG 257
               L + +YG
Sbjct:   246 SKLLAAVYG 254

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 89/254 (35%), Positives = 140/254 (55%)

Query:    12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
             + KP++ ++  Q  Y  +Y IT  SF HGMN  +  TYRH+VA I + PFA  LERKIRP
Sbjct:     8 KLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRP 67

Query:    72 KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETL 131
             K+T  LFL I  L  +   L  N+Y+  ++ TS                      R+ET+
Sbjct:    68 KMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETV 127

Query:   132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAAR--NPGHPPIHIQRNNIIQE----QWLK 185
             +L+  R +AKV+GT +++ G  +MT+YKGPA       H  +H   +    E     W+ 
Sbjct:   128 NLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVT 187

Query:   186 GSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRI 245
             G+   + S  TW+  +I+Q+ TLK+YPA+LSL  W+C +G   + + ++I+ R  + W++
Sbjct:   188 GTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRDVSAWKV 247

Query:   246 GLNIDLWSTIY-GV 258
             G++    + +Y GV
Sbjct:   248 GMDSGTLAAVYSGV 261

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 93/251 (37%), Positives = 142/251 (56%)

Query:    12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
             + KP+L ++  Q  Y  +Y IT  SF HGM+  V  TYRH+VA + M PFA   ERKIRP
Sbjct:     8 KIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRP 67

Query:    72 KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETL 131
             K+TLA+F  +  L ++   +  N+Y+  L+ TS                      RLET+
Sbjct:    68 KMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETV 127

Query:   132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAAR--NPGHPPIHIQRNNIIQEQ-WLKGSF 188
             + R    +AKV+GT++++ G  IMT+YKGPA       H   H   ++    Q W+ G+ 
Sbjct:   128 NFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTI 187

Query:   189 LTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLN 248
               + S  TW+A +I+Q+ TLK YPA+LSL T +C +G   +A+ ++I+ R P+ W+IG++
Sbjct:   188 AIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDPSAWKIGMD 247

Query:   249 IDLWSTIY-GV 258
                 + +Y GV
Sbjct:   248 SGTLAAVYSGV 258

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/264 (35%), Positives = 147/264 (55%)

Query:     4 SSLHNVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAY 63
             SS  +     KP   M+  Q  Y  +  IT+ S N GM+ +V V YRH +A   + PFA+
Sbjct:     7 SSCESFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAF 66

Query:    64 FLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXX 123
             F ERK +PK+T ++F+++F+L L+G  +  N Y+  L+YTSP                  
Sbjct:    67 FFERKAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILA 126

Query:   124 XXLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ--------- 174
                R+E LDL+     AK+ GT+V++AG  +MT+YKGP         +HIQ         
Sbjct:   127 VLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTS 186

Query:   175 -RNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPA-QLSLTTWMCFLGAAQSAVF 232
              +N+   +++LKGS L I +++ W++++++QA  LK Y   QLSLTT +CF+G  Q+   
Sbjct:   187 SKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAV 246

Query:   233 TVIVARKPADWRIGLNIDLWSTIY 256
             T ++   P+ WRIG +++L +  Y
Sbjct:   247 TFVMEHNPSAWRIGWDMNLLAAAY 270

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 85/258 (32%), Positives = 137/258 (53%)

Query:    14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
             KP L M+  Q  Y  +Y IT  S  HGMN +V   YRH +A   + PFA F ERKIRPK+
Sbjct:    10 KPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPKM 69

Query:    74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETLDL 133
             T  +FL+I +L  +   L  N+Y+  + YTS                      RLE+++ 
Sbjct:    70 TFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNF 129

Query:   134 RNARGMAKVLGTLVSLAGVTIMTVYKGP-----------AARNPGHPPIHIQRNNIIQEQ 182
             +  R +AKV+GT+++++G  +MT+YKGP              + G    H        ++
Sbjct:   130 KKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDK 189

Query:   183 -WLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPA 241
              W+ G+ + +  +  W+  +I+Q+ TLK+YPA+LSLTT +C +G  +    +++  R  +
Sbjct:   190 HWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLS 249

Query:   242 DWRIGLNIDLWSTIY-GV 258
              W+IG + +L++  Y GV
Sbjct:   250 AWKIGFDSNLFAAAYSGV 267

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 83/250 (33%), Positives = 130/250 (52%)

Query:    12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP 71
             + +P LLM+  Q      Y +  A+ N G N +V + YR++VA + + PFA   ERK+RP
Sbjct:    10 KLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRP 69

Query:    72 KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETL 131
             K+TL++  +I  L  +   L     +  +  TS                     LR+E +
Sbjct:    70 KMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKV 129

Query:   132 DLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRN---NIIQEQ--WLKG 186
             ++   R  AK++GTLV L G  +MT+YKGP    P   P   Q+N   N  Q+   W+ G
Sbjct:   130 NIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVG 189

Query:   187 SFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIG 246
             + L +   + WS  Y++Q+IT+K YPA LSL+  +C  GA QS    ++V R P+ W +G
Sbjct:   190 TLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVG 249

Query:   247 LNIDLWSTIY 256
              +  L++ +Y
Sbjct:   250 WDARLFAPLY 259

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 91/253 (35%), Positives = 135/253 (53%)

Query:    14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
             KP L++ + Q+ YT ++ I++A FN GMN  V+V YR   A I + P A+F ERK  P L
Sbjct:     7 KPYLMVTIIQVIYTIMFLISKAVFNGGMNTFVFVFYRQAFATIFLAPLAFFFERKSAPPL 66

Query:    74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETLDL 133
             +   F++IF+LSL GVTL+L++   +L YTS                       +E L +
Sbjct:    67 SFVTFIKIFMLSLFGVTLSLDLNGIALSYTSATLAAATTASLPAITFFLALLFGMERLKV 126

Query:   134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARNP-----GHPPIHIQRNN---II--QEQW 183
             ++ +G AK++G  V + GV I+ +YKGP  + P      H   H  RNN   +      W
Sbjct:   127 KSIQGTAKLVGITVCMGGVIILAIYKGPLLKLPLCPHFYHGQEHPHRNNPGHVSGGSTSW 186

Query:   184 LKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADW 243
             LKG  L I S+I W    ++Q   LK YP++L  TT  C L + QS V  + + R  + W
Sbjct:   187 LKGCVLMITSNILWGLWLVLQGRVLKVYPSKLYFTTLHCLLSSIQSFVIAIALERDISAW 246

Query:   244 RIGLNIDLWSTIY 256
             ++G N+ L + IY
Sbjct:   247 KLGWNLRLVAVIY 259

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 83/244 (34%), Positives = 134/244 (54%)

Query:    14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
             KP   MV  Q  Y  +  +T+   + GM+ +V V YR+  A  A+ PFA   ERK+RPK+
Sbjct:    10 KPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRPKM 69

Query:    74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETLDL 133
             T  +F++IFVL+L+G  +  N+Y+A L+ TSP                     R+E +++
Sbjct:    70 TFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEKVEM 129

Query:   134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARN-PGHPPIHIQRNNIIQEQWLKGSFLTIA 192
             R  R  AKV+GTLV + G  +M ++K P       H   H    +   E +LK +   + 
Sbjct:   130 RKVRFQAKVVGTLVIVVGAMLMILFKIPLITFLRSHLTGHAL--SPAGEDYLKATVFLLI 187

Query:   193 SSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLW 252
             +S +W++ +++QA TLKRY + LSL+T +CF+G  QS   T ++    + W IG +++L 
Sbjct:   188 ASFSWASFFVLQAATLKRYSSHLSLSTMVCFMGTLQSTALTFVMEPNLSAWNIGFDMNLL 247

Query:   253 STIY 256
             ++ Y
Sbjct:   248 ASAY 251

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 77/244 (31%), Positives = 132/244 (54%)

Query:    14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
             KP   MV  Q  Y  +  +T+   + GM+ +V V YR+  A  A+ PFA   ERK+R K+
Sbjct:    10 KPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRSKM 69

Query:    74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETLDL 133
             T  +F+ IF+L+L+G  +  N+Y+  L+ TSP                     R+E +++
Sbjct:    70 TFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVEM 129

Query:   134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQR-NNIIQEQWLKGSFLTIA 192
             R  R + KV+GTLV++ G  +M  YKGP          H+   ++     +LK +   + 
Sbjct:   130 RKVRCLVKVMGTLVTVVGSILMIFYKGPFIN---FFRSHLTAASSPPTADYLKAAVFLLL 186

Query:   193 SSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGLNIDLW 252
             +S++W++ +++QA TLK+Y A LS++T +CF+G  QS     ++   P+   IG +++L 
Sbjct:   187 ASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSALNIGFDMNLL 246

Query:   253 STIY 256
             ++ Y
Sbjct:   247 ASAY 250

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 82/247 (33%), Positives = 129/247 (52%)

Query:    14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL 73
             +P + MV+ Q+    +  +++A  N GM+ +V V YRH VA I M PFA++ ++K+RPK+
Sbjct:    14 RPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRPKM 73

Query:    74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPXXXXXXXXXXXXXXXXXXXXLRLETLDL 133
             TL +F +I +L L+   +  N+Y+  ++YT+                       LE + L
Sbjct:    74 TLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKL 133

Query:   134 RNARGMAKVLGTLVSLAGVTIMTVYKGPAAR---NPGHPPIHIQRNNIIQEQWLKGSFLT 190
             R  R   KV+GTL ++ G  IMT+ KGP        G    H      I    +KG+ L 
Sbjct:   134 RCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKG-VSAHNTAGTDIHSA-IKGAVLV 191

Query:   191 IASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQ-SAVFTVIVARKPADWRIGLNI 249
                  +++   I+QAITL+ YPA+LSLT W+C +G  + +AV  V+    P+ W IG + 
Sbjct:   192 TIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDT 251

Query:   250 DLWSTIY 256
              L +  Y
Sbjct:   252 KLLTATY 258

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-19
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-06

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 86.5 bits (214), Expect = 1e-19
 Identities = 59/247 (23%), Positives = 120/247 (48%), Gaps = 8/247 (3%)

Query: 16  LLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLER-KIRPKLT 74
           L  M+  + S   +  + + + + G+N + ++ Y +++A + + P  +F  R +  P L+
Sbjct: 15  LTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLS 74

Query: 75  LALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLR 134
           +++  +I +L  +G    +  Y   + Y++PT  +++ N   A+TF++A++ R+E +  +
Sbjct: 75  VSILSKIGLLGFLGSMYVITGYIG-IEYSNPTLASAISNITPALTFILAIIFRMEKVSFK 133

Query: 135 NARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRN-----NIIQEQWLKGSFL 189
               +AKV+GT++SL G  ++  Y GP       PP    R      +     WL G  L
Sbjct: 134 ERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGAL 193

Query: 190 TIASSITWSAMYIMQAITLKRYPAQLSLT-TWMCFLGAAQSAVFTVIVARKPADWRIGLN 248
                I  S  +I+QA  +  YPA  +++  +   +    S +  V+    P+ W I  +
Sbjct: 194 LTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFD 253

Query: 249 IDLWSTI 255
           I L + +
Sbjct: 254 ITLITIV 260

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 29  LYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVG 88
           LYF+        ++P  +  YR ++AGI +     FL RK    L+L   L +  L L G
Sbjct: 5   LYFVFSKKLLERISPLTFTAYRFLIAGI-LLILLLFLLRKPFALLSLKAILALLYLGLFG 63

Query: 89  VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVS 148
             L   +YF +L+Y S +  + + +     T +++V+L  E L L+      ++LG ++ 
Sbjct: 64  TALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLK------QLLGIVLI 117

Query: 149 LAGVTIMTV 157
           L GV ++ +
Sbjct: 118 LLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.89
PRK11689	295	aromatic amino acid exporter; Provisional	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.88
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.87
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.82
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.79
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.76
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.73
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.71
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.64
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.64
COG2510	140	Predicted membrane protein [Function unknown]	99.59
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.49
COG2962	293	RarD Predicted permeases [General function predict	99.48
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.45
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.45
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.38
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.34
PRK11272	292	putative DMT superfamily transporter inner membran	99.32
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.29
PLN00411	358	nodulin MtN21 family protein; Provisional	99.24
PRK11689	295	aromatic amino acid exporter; Provisional	99.21
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.17
KOG2765	416	consensus Predicted membrane protein [Function unk	99.14
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.09
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.07
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.02
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.97
PRK15430	296	putative chloramphenical resistance permease RarD;	98.86
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.85
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.81
KOG2766	336	consensus Predicted membrane protein [Function unk	98.8
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.79
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.71
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.64
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.64
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.6
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.38
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.36
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.33
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.31
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.3
PRK13499	345	rhamnose-proton symporter; Provisional	98.06
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.85
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.82
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.81
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.75
COG2962	293	RarD Predicted permeases [General function predict	97.7
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.62
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.44
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.32
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.29
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.25
COG2076	106	EmrE Membrane transporters of cations and cationic	97.22
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.22
KOG2765	416	consensus Predicted membrane protein [Function unk	97.19
PRK11431	105	multidrug efflux system protein; Provisional	97.08
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.01
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.95
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.81
KOG1580	337	consensus UDP-galactose transporter related protei	96.73
KOG1581	327	consensus UDP-galactose transporter related protei	96.67
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.63
PRK13499	345	rhamnose-proton symporter; Provisional	96.59
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	96.31
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.23
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.19
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	96.17
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.94
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.81
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	95.23
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.13
KOG1580	337	consensus UDP-galactose transporter related protei	94.44
KOG1581	327	consensus UDP-galactose transporter related protei	94.25
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	93.39
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	91.98
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.96
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	89.61
KOG4831	125	consensus Unnamed protein [Function unknown]	89.59
KOG1582	367	consensus UDP-galactose transporter related protei	89.06
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	88.08
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	87.97
KOG1582	367	consensus UDP-galactose transporter related protei	86.66
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	86.19
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	80.62

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=2.5e-26  Score=208.64  Aligned_cols=251  Identities=23%  Similarity=0.417  Sum_probs=192.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcc-cCCcCCHHHHHHHHHHHHHH
Q 024323           10 YLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERK-IRPKLTLALFLEIFVLSLVG   88 (269)
Q Consensus        10 ~~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~   88 (269)
                      .++.++++.+++.++.++...++.|.+.+.+++|..+.++|+.+|+++++++++.++++ ..++.+++++..+.+.|+++
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999899999999999999999999988765542 23344678888899999998


Q ss_pred             HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHH------hccccccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 024323           89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVL------RLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPA  162 (269)
Q Consensus        89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~  162 (269)
                       ++++.+++.|++++++++++++.++.|+++.++++++      +|||++++      +++|++++++|+.+++..+++.
T Consensus        89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~  161 (358)
T PLN00411         89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPR  161 (358)
T ss_pred             -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcc
Confidence             6788899999999999999999999999999999999      58888886      9999999999999987543321


Q ss_pred             CCCCCCCC-----ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 024323          163 ARNPGHPP-----IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVA  237 (269)
Q Consensus       163 ~~~~~~~~-----~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  237 (269)
                      .....+++     .....++.+..+...|+.+.+.|+++||+|++++|+..+++++....+++++.++.+.+.++....+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~  241 (358)
T PLN00411        162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE  241 (358)
T ss_pred             cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc
Confidence            10000000     0000011122344679999999999999999999999998876567778888888887777777665


Q ss_pred             C-CCCCeeeecCchhhHHHH----------HHHHhhhcccc
Q 024323          238 R-KPADWRIGLNIDLWSTIY----------GVSWRIRQDLY  267 (269)
Q Consensus       238 ~-~~~~~~~~~~~~~~~~~y----------~~~w~~~~~~~  267 (269)
                      + +..+|.......+++++|          +++|+++|.|-
T Consensus       242 ~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga  282 (358)
T PLN00411        242 KNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGP  282 (358)
T ss_pred             cCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            4 233343323323334444          78889999874

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=3.3e-21  Score=171.15  Aligned_cols=191  Identities=15%  Similarity=0.181  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      -.+..+...++||.+++++|...+ ++||..++++|+..++++++++...++++   ..+++++......|.++...++.
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999988 79999999999999999988876543322   23567778888888887777888


Q ss_pred             HHHHHh-hccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 024323           95 MYFASL-RYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI  173 (269)
Q Consensus        95 ~~~~al-~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~  173 (269)
                      +++.+. +++++++++++.++.|+++.+++++ +|||++++      +++|++++++|+.++.. ++.            
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~~------------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GGN------------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Ccc------------
Confidence            999999 9999999999999999999999985 69999997      99999999999998852 111            


Q ss_pred             cCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 024323          174 QRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVA  237 (269)
Q Consensus       174 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  237 (269)
                           . ++...|++++++++++||.|++..||..++  ++...+.+++.++++.+.+.....+
T Consensus       145 -----~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  200 (292)
T PRK11272        145 -----L-SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSG  200 (292)
T ss_pred             -----c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcC
Confidence                 1 122479999999999999999999997653  3456778888888888887776543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.89  E-value=7.3e-21  Score=169.45  Aligned_cols=219  Identities=15%  Similarity=0.220  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      ..+..++++++||.++++.|...+ ++||..++++|+.++++.++++.  +++    +.+++   .....|+......+.
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--ARP----KVPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--cCC----CCchH---HHHHHHHHHHHHHHH
Confidence            345688999999999999999998 79999999999999887665543  111    12222   234445555556667


Q ss_pred             HHHHHhhc-cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 024323           95 MYFASLRY-TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI  173 (269)
Q Consensus        95 ~~~~al~~-~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~  173 (269)
                      +++.++++ .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.  +++..          
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~--~~~~~----------  136 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI--EDSLN----------  136 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc--cccCC----------
Confidence            88889998 58899999999999999999999999999997      9999999999999986  22110          


Q ss_pred             cCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC--chhHHHHHHHHHHHHHHHHHHHhcCCCC---CeeeecC
Q 024323          174 QRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPA--QLSLTTWMCFLGAAQSAVFTVIVARKPA---DWRIGLN  248 (269)
Q Consensus       174 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~  248 (269)
                           +......|+.++++++++|++|++++|+..++.++  ......+++..+.+...+.....+++..   .+.....
T Consensus       137 -----~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (299)
T PRK11453        137 -----GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM  211 (299)
T ss_pred             -----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence                 11112469999999999999999999998765532  2233444555554444444443443211   1111112


Q ss_pred             chhhHHHH-----------HHHHhhhccc
Q 024323          249 IDLWSTIY-----------GVSWRIRQDL  266 (269)
Q Consensus       249 ~~~~~~~y-----------~~~w~~~~~~  266 (269)
                      ..|..++|           ++.++++|.+
T Consensus       212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~  240 (299)
T PRK11453        212 TTILSLMYLAFVATIVGYGIWGTLLGRYE  240 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34555555           6677777654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.88  E-value=3.9e-21  Score=170.90  Aligned_cols=226  Identities=13%  Similarity=0.050  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL   91 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   91 (269)
                      +.++.+.++++.++||.+++..|...+ +++|..+.++|+.+++++++++.  . ++   +.++++ ++....+.++...
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~--~-~~---~~~~~~-~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV--G-FP---RLRQFP-KRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc--c-cc---cccccc-HHHHHHHhHHHHH
Confidence            457788899999999999999999998 79999999999999999887652  1 11   112222 2233445555667


Q ss_pred             HHHHHHHHhhc----cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323           92 TLNMYFASLRY----TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG  167 (269)
Q Consensus        92 ~~~~~~~al~~----~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  167 (269)
                      ++.+++.++++    +++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. .+...+..+
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~~~  146 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSLAE  146 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchhhh
Confidence            78888888765    57788999999999999999999999999997      99999999999999862 111000000


Q ss_pred             CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCeeeec
Q 024323          168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIGL  247 (269)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  247 (269)
                           .  ++ +..+...|+.+++.|+++||.|+++.||..++. ++....   ...+.+.+.+.....+.+..+++.  
T Consensus       147 -----~--~~-~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~--  212 (295)
T PRK11689        147 -----L--IN-NIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMVFSL--  212 (295)
T ss_pred             -----h--hh-ccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccccCCH--
Confidence                 0  00 111224699999999999999999999987665 454432   233334444433333222111111  


Q ss_pred             CchhhHHHH----------HHHHhhhcccc
Q 024323          248 NIDLWSTIY----------GVSWRIRQDLY  267 (269)
Q Consensus       248 ~~~~~~~~y----------~~~w~~~~~~~  267 (269)
                       ..+..++|          ++++++||.+-
T Consensus       213 -~~~~~l~~~~~~t~~~~~l~~~al~~~~a  241 (295)
T PRK11689        213 -PAIIKLLLAAAAMGFGYAAWNVGILHGNM  241 (295)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence             12323332          78888888763

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.88  E-value=8.1e-21  Score=165.23  Aligned_cols=181  Identities=16%  Similarity=0.196  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 024323           26 YTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSP  105 (269)
Q Consensus        26 w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~  105 (269)
                      ||.+++..|...+++.|+....+.|+..+.+++.++...+       .+++++.+....|.++..+++.+++.|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            8999999999887568999999999999988877754321       244566778888888888999999999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhh
Q 024323          106 TFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLK  185 (269)
Q Consensus       106 ~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (269)
                      ++++++.++.|+++++++++++|||++++      +++|++++++|+.++. .++                  +.++...
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~------------------~~~~~~~  128 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG------------------NLSINPA  128 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC------------------cccccHH
Confidence            99999999999999999999999999997      9999999999999985 221                  1123358


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          186 GSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       186 G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                      |+.++++++++|+.+.+..|+..++.+ ++...+.+++.++.+.+.+.....++
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP  182 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999887663 23345556788888888888775543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=5.2e-20  Score=163.74  Aligned_cols=169  Identities=9%  Similarity=0.008  Sum_probs=135.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccC--C-cCCHHHHHHHHHH
Q 024323            8 NVYLRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIR--P-KLTLALFLEIFVL   84 (269)
Q Consensus         8 ~~~~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~   84 (269)
                      +|.++.|+.++++++.++||.+++..|.. + +++|.++.++|+.++.+++.++...+++...  + ..+++++. ....
T Consensus         2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (296)
T PRK15430          2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAV   78 (296)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHH
Confidence            35677889999999999999999999985 5 6999999999999999887776544322111  0 11344432 3346


Q ss_pred             HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 024323           85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAAR  164 (269)
Q Consensus        85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~  164 (269)
                      +.++.+.++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. ..    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~-~~----  147 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLW-TF----  147 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHH-Hc----
Confidence            66667889999999999999999999999999999999999999999997      99999999999999862 10    


Q ss_pred             CCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024323          165 NPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLK  209 (269)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~  209 (269)
                                    ++ .    ..++++++++||.|++..|+..+
T Consensus       148 --------------~~-~----~~~~l~aa~~~a~~~i~~r~~~~  173 (296)
T PRK15430        148 --------------GS-L----PIIALGLAFSFAFYGLVRKKIAV  173 (296)
T ss_pred             --------------CC-c----cHHHHHHHHHHHHHHHHHHhcCC
Confidence                          11 1    14688899999999999888654

>TIGR00688 rarD rarD protein

Probab=99.87  E-value=7.7e-20  Score=159.23  Aligned_cols=163  Identities=12%  Similarity=0.169  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccc-----CCcCCHH-HHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKI-----RPKLTLA-LFLEIFVLSLV   87 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~   87 (269)
                      |+++++++++++||.++++.|. .+ ++||.+++++|..++++++.++...+++++     .++.+++ ++......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5788999999999999999998 45 699999999999999988777654433211     1112222 33445666666


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323           88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG  167 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  167 (269)
                       ...++.+++.+++++++++++++.++.|+++++++++++|||++++      +++|++++++|+.++... +       
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~-~-------  144 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL-K-------  144 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH-c-------
Confidence             5689999999999999999999999999999999999999999997      999999999999988621 0       


Q ss_pred             CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024323          168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLK  209 (269)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~  209 (269)
                                 ++ .    ..++++++++|+.|.+..|+..+
T Consensus       145 -----------~~-~----~~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       145 -----------GS-L----PWEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             -----------CC-c----hHHHHHHHHHHHHHHHHHhhcCC
Confidence                       01 1    14678999999999999998654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.82  E-value=5.4e-18  Score=150.60  Aligned_cols=219  Identities=11%  Similarity=0.102  Sum_probs=159.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHH
Q 024323           11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVT   90 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   90 (269)
                      ++.+++.+++++.++|+.+..+.|...+ +.||..+.++|+.+++++++++... ++   ++.+++++......|++. .
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~-~~---~~~~~~~~~~~~~~g~~~-~   82 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP-WR---LRFAKEQRLPLLFYGVSL-G   82 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH-Hh---ccCCHHHHHHHHHHHHHH-H
Confidence            3478899999999999999999999998 6999999999999999988776422 11   124567777777888774 5


Q ss_pred             HHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 024323           91 LTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPP  170 (269)
Q Consensus        91 ~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  170 (269)
                      ..+.++++++++++++.++++.++.|+++.+++    +|++.        +..++.++++|+.++. ..+..        
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~--------  141 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQD--------  141 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCC--------
Confidence            778889999999999999999999999999876    35543        3445678899998875 22211        


Q ss_pred             ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCeeee----
Q 024323          171 IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARKPADWRIG----  246 (269)
Q Consensus       171 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----  246 (269)
                              .+.....|++++++++++||.|.+..|+..++. ++... .+...++++.+.|.....++. ..++..    
T Consensus       142 --------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~  210 (293)
T PRK10532        142 --------VSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-ALWHWSILPL  210 (293)
T ss_pred             --------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-ccCCHHHHHH
Confidence                    111224799999999999999999999988776 45554 466677777777766654321 112111    


Q ss_pred             -cCchhhHHH--H-HHHHhhhcccc
Q 024323          247 -LNIDLWSTI--Y-GVSWRIRQDLY  267 (269)
Q Consensus       247 -~~~~~~~~~--y-~~~w~~~~~~~  267 (269)
                       ...+..+.+  | +++++++|.+-
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a  235 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPT  235 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCh
Confidence             111222222  2 88999998763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.79  E-value=4.4e-17  Score=145.24  Aligned_cols=179  Identities=13%  Similarity=0.108  Sum_probs=147.1

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh
Q 024323           31 FITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS  110 (269)
Q Consensus        31 ~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~  110 (269)
                      +.=|...++-..|...++.|+..+.+...+. +..+.+++++.+++++++....|++. ++++.+.+.++++++++++++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence            4557777732569999999999988776554 21122233457888999999999996 688899999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHH
Q 024323          111 VVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLT  190 (269)
Q Consensus       111 l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~  190 (269)
                      +.++.|+++++++++++|||++++      ++.|++++++|+.+..  .++                 .+ ....|++++
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~-----------------~~-~~~~G~~~~  150 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE-----------------LS-FNWAGFLSA  150 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc-----------------cc-ccHHHHHHH
Confidence            999999999999999999999997      9999999999998753  111                 11 224699999


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          191 IASSITWSAMYIMQAITLK--RYPAQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       191 l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                      ++|+++|+.|++..||..+  +. ++.+.+.+++..+++.+.|.....|+
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999877  55 68899999999999999999876654

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.76  E-value=1e-16  Score=141.57  Aligned_cols=167  Identities=12%  Similarity=0.134  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           16 LLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLE-RKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        16 ~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      .++.++++++|+......|...+ +.++  ...++...+.+++.|+...+. ++.+++.+++++ .....+.++...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHAD-KEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFW-LLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC-chhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhH-HHHHHHHHHHHHHHH
Confidence            46788999999999999997766 3344  347777777777777665432 222333344444 444445555678999


Q ss_pred             HHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 024323           95 MYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ  174 (269)
Q Consensus        95 ~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  174 (269)
                      +++.++++.++++++.+.++.|+++.+++++++|||++++      +++|++++++|+.++.. ++  .           
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~--~-----------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SR--F-----------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-cc--c-----------
Confidence            9999999999999999999999999999999999999996      99999999999998862 11  0           


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323          175 RNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRY  211 (269)
Q Consensus       175 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~  211 (269)
                          .. ....|+.++++++++|+.|++..|+..++.
T Consensus       139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~  170 (281)
T TIGR03340       139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGV  170 (281)
T ss_pred             ----cc-cchhHHHHHHHHHHHHHHhhhhccccccch
Confidence                11 113688899999999999999988765443

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.73  E-value=1.1e-15  Score=139.13  Aligned_cols=197  Identities=12%  Similarity=0.114  Sum_probs=152.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcccCCcC--CHHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMN-PHVYVTYRHIVAGIAMFPFAYFLERKIRPKL--TLALFLEIFVLSLVGV   89 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~-p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~   89 (269)
                      .|...+.+..-.+-.......|..++ ..+ |..++.+|++++.++...+.. .+.++.++.  .+++++.++..|+++.
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34455555555555666777888888 699 999999999999887554432 222222223  3457788999999987


Q ss_pred             HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323           90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHP  169 (269)
Q Consensus        90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  169 (269)
                      .. +...+.++++++++.+.++.++.|+++++++++++|||++++      ++++++++++|+.+.+.  ++        
T Consensus       126 ~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~--------  188 (350)
T PTZ00343        126 FV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE--------  188 (350)
T ss_pred             HH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc--------
Confidence            55 555779999999999999999999999999999999999997      99999999999999862  11        


Q ss_pred             CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC------CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP------AQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                               .+. ...|++++++|+++|+.++++.|+..++.+      ++.....++..+|+++++|+....|.
T Consensus       189 ---------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        189 ---------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             ---------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     112 247999999999999999999999877541      34456666688999999998876654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.71  E-value=4.1e-15  Score=133.29  Aligned_cols=206  Identities=18%  Similarity=0.250  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhc-ccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMN-PHVYVTYRHIVAGIAMFPFAYFLER-KIRPKLTLALFLEIFVLSLVGVTLT   92 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~-p~~~~~~r~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~   92 (269)
                      .+++.=..+++-+.+........+++.+ |....++-+..-+++..+....+++ +.+.+..+++|+++++.+++.. .+
T Consensus        14 ~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~a   92 (334)
T PF06027_consen   14 VLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EA   92 (334)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HH
Confidence            3333333445555556666655544555 7777777776666665555444332 2222334456778888899985 88


Q ss_pred             HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 024323           93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIH  172 (269)
Q Consensus        93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  172 (269)
                      +.+...|++|++.+.+.++..+.-+++++++++++|||.++.      |++|++++++|+.+++..+..  ..       
T Consensus        93 N~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~--~~-------  157 (334)
T PF06027_consen   93 NYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVL--SG-------  157 (334)
T ss_pred             HHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccc--cc-------
Confidence            899999999999999999999999999999999999999995      999999999999998743211  11       


Q ss_pred             ccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323          173 IQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK  239 (269)
Q Consensus       173 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  239 (269)
                        +++.++.+...||+++++|++.||+++++.++..++. +..+...+.-++|.++..+.....|.+
T Consensus       158 --~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~  221 (334)
T PF06027_consen  158 --SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERS  221 (334)
T ss_pred             --ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehh
Confidence              1112455678999999999999999999999999988 577888888899999999888887764

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.64  E-value=6.4e-14  Score=122.79  Aligned_cols=185  Identities=21%  Similarity=0.328  Sum_probs=138.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL   91 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   91 (269)
                      ........++..+.|+.+....|...++..++......|...+.+...+.....+ ....+...+ +.+....+.++...
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~   82 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEP-RGLRPALRP-WLLLLLLALLGLAL   82 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc-ccccccccc-hHHHHHHHHHHHHH
Confidence            4456778888889999999999998873366777777799999888443332211 111111111 34566667777789


Q ss_pred             HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHH-HHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 024323           92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAV-VLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPP  170 (269)
Q Consensus        92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  170 (269)
                      ++.+++.++++++++.++.+.++.|+++.++++ +++|||++++      ++.|..+++.|+.++.. .+. ..      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~-~~~-~~------  148 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL-GGG-GG------  148 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec-CCC-cc------
Confidence            999999999999999999999999999999997 7779999997      99999999999999962 111 00      


Q ss_pred             ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHH-HHHH
Q 024323          171 IHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTT-WMCF  223 (269)
Q Consensus       171 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~  223 (269)
                              +.. ...|+.++++++++|+++.+..|+.. +. ++..... ++..
T Consensus       149 --------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~  191 (292)
T COG0697         149 --------GIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL  191 (292)
T ss_pred             --------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH
Confidence                    011 46899999999999999999999887 44 4445444 4443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.64  E-value=2.1e-15  Score=116.00  Aligned_cols=125  Identities=21%  Similarity=0.419  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024323           24 LSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYT  103 (269)
Q Consensus        24 ~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~  103 (269)
                      ++||.+.+..|...+ +.||...+.+|+..+.+ ++++....+++..+..+.+++......|.++..+++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            469999999999998 69999999999999998 6666555554433457777888888889887789999999999999


Q ss_pred             CchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323          104 SPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus       104 ~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +++.++.+.+++|+++.+++++++||+++++      +++|++++++|+.+++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996      9999999999999874

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.59  E-value=1.5e-14  Score=109.82  Aligned_cols=135  Identities=17%  Similarity=0.285  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCC-cCCHHHHHHHHHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP-KLTLALFLEIFVLSLVGVTLT   92 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~   92 (269)
                      +..++.++++++|+...++.|...+ ++||...++.|-.+...++..+....++.+.. ....|.|..+.+.|+.+ .+.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence            4678899999999999999999998 79999999999999999888877766653332 24777788888888664 699


Q ss_pred             HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +.+||.+++...++.+.-+-.+.|+++.+++++++|||++.+      +++|+++..+|++++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999997      9999999999998764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.49  E-value=3.1e-12  Score=113.60  Aligned_cols=189  Identities=13%  Similarity=0.092  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      ++++.++++++||...+..|...  +.++.++.  |..++.+++..+....++++  ...++.+..-+..|.+ ...++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence            46788999999999999999864  57777775  77778877765554433211  1123333334444444 568889


Q ss_pred             HHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhH----HHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323           95 MYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAK----VLGTLVSLAGVTIMTVYKGPAARNPGHP  169 (269)
Q Consensus        95 ~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  169 (269)
                      +++.++++++.+.+..+.+ ++|++..+++.+++|||.+++      +    ++|++++++|+.++.. .+ ..+.    
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~-~~-~~~~----  142 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSR-SK-DKSA----  142 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEe-cc-cccc----
Confidence            9999999999999999888 888999999999999999997      8    9999999999888752 11 1110    


Q ss_pred             CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHH---HHHHHHHHHHHHH
Q 024323          170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLT---TWMCFLGAAQSAV  231 (269)
Q Consensus       170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~---~~~~~~g~~~~~~  231 (269)
                           +++ ...+..+|..++++++++|+.|.+..|+. + + +|.+.+   .+.+++++....+
T Consensus       143 -----~~~-~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~-~~~~~~~~~~~g~~~~~~~~~~  198 (290)
T TIGR00776       143 -----GIK-SEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V-DGLSVLLPQAIGMVIGGIIFNL  198 (290)
T ss_pred             -----ccc-cccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C-CcceehhHHHHHHHHHHHHHHH
Confidence                 000 00233579999999999999999998875 2 4 577774   3344444444333

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.48  E-value=2e-11  Score=105.49  Aligned_cols=193  Identities=15%  Similarity=0.120  Sum_probs=147.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccC--C-cCCHHHHHHHHHHHHH
Q 024323           11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIR--P-KLTLALFLEIFVLSLV   87 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~   87 (269)
                      +.+||++..+.+.+.||..+...|...  +.++.++...|...+..+++.+....++.+.  . ..+++.+..+...+..
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            356899999999999999999999964  5999999999999999998766555443211  1 1244455556666666


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323           88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG  167 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  167 (269)
                       .+.++..|.++.++-.+-++++=.+..|++..+++.+++|||+++      .|+++++++.+||...+.-.|       
T Consensus        82 -i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g-------  147 (293)
T COG2962          82 -IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG-------  147 (293)
T ss_pred             -HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC-------
Confidence             578999999999999999999999999999999999999999999      599999999999999874222       


Q ss_pred             CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323          168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK  239 (269)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  239 (269)
                                  +.+     ..++.=+++|+.|...-|+. + . ++.+=.+..+..-.+..+...+..+.+
T Consensus       148 ------------~lp-----wval~la~sf~~Ygl~RK~~-~-v-~a~~g~~lE~l~l~p~al~yl~~l~~~  199 (293)
T COG2962         148 ------------SLP-----WVALALALSFGLYGLLRKKL-K-V-DALTGLTLETLLLLPVALIYLLFLADS  199 (293)
T ss_pred             ------------CCc-----HHHHHHHHHHHHHHHHHHhc-C-C-chHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence                        112     44566678999999984432 2 2 455555566666666666555555444

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.45  E-value=5.3e-14  Score=119.44  Aligned_cols=232  Identities=14%  Similarity=0.193  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL   93 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   93 (269)
                      ++.++..++ ..+....++.+...+  .||....-.|++.-.++..|..+++....+.+...|  .++++.|+.|. .+.
T Consensus        38 ~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~-tgv  111 (346)
T KOG4510|consen   38 LGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGF-TGV  111 (346)
T ss_pred             cCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhh-hHH
Confidence            345555555 555555555555554  799999999966666655554443332221122222  45678888875 556


Q ss_pred             HHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 024323           94 NMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHI  173 (269)
Q Consensus        94 ~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~  173 (269)
                      ...|++++|.+-+.+.++.+..|.++++++|.++|||.++      ...+|..+.+.||++++  +.+...+++....  
T Consensus       112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv--RPpFlFG~~t~g~--  181 (346)
T KOG4510|consen  112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV--RPPFLFGDTTEGE--  181 (346)
T ss_pred             HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe--cCCcccCCCcccc--
Confidence            6778899999999999999999999999999999999999      59999999999999997  5655444322111  


Q ss_pred             cCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHh-----cCCCCCeeeecC
Q 024323          174 QRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIV-----ARKPADWRIGLN  248 (269)
Q Consensus       174 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~  248 (269)
                       +++ .-...+.|.+-++.+++.-|..+++.|++.|+.. ......+..+++.+...+.....     .+...||.+..+
T Consensus       182 -~~s-~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~  258 (346)
T KOG4510|consen  182 -DSS-QVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVN  258 (346)
T ss_pred             -ccc-cccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEE
Confidence             111 1234467899999999999999999999988763 33333344445544443333222     223346666556


Q ss_pred             chhhHHHH--HHHHhhhc
Q 024323          249 IDLWSTIY--GVSWRIRQ  264 (269)
Q Consensus       249 ~~~~~~~y--~~~w~~~~  264 (269)
                      .+..+.+.  +.+.++++
T Consensus       259 lGvfgfigQIllTm~lQi  276 (346)
T KOG4510|consen  259 LGVFGFIGQILLTMGLQI  276 (346)
T ss_pred             ehhhhhHHHHHHHHHhhh
Confidence            66666665  55555543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.45  E-value=4.5e-12  Score=110.15  Aligned_cols=132  Identities=18%  Similarity=0.319  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNP--HVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGV   89 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p--~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   89 (269)
                      +.++.++.++++++|+...+..|...+ +.++  .....+++.++.+++.+.....++..  ..+.++|......++++.
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  202 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLIGT  202 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHHH
Confidence            457899999999999999999999886 5664  45555789999998888776544322  346677777888999988


Q ss_pred             HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHH
Q 024323           90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGV  152 (269)
Q Consensus        90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv  152 (269)
                      .+++.+++.++++.+++.++.+.+++|+++.+++++++||+++++      ++.|..+.+.|+
T Consensus       203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999996      999999999886

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.38  E-value=5.9e-11  Score=100.36  Aligned_cols=188  Identities=11%  Similarity=0.088  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      +++.++.+.+.-=...-+.|..+. ..+|.-.+.+|..+++++++++..    +.+.++++++|..+...|..- ..-+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~R----Pwr~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFP-LVGAAGVTALRLAIAALILLALFR----PWRRRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHhh----HHHhccChhhhHHHHHHHHHH-HHHHH
Confidence            467777777777777888899888 699999999999999999887642    222347888888888888774 46788


Q ss_pred             HHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 024323           95 MYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQ  174 (269)
Q Consensus        95 ~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  174 (269)
                      +||.+++++|-+.+..+-++.|+..+.++-    +|..        +...+.+++.|+.++. ..++..           
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~~--------d~vwvaLAvlGi~lL~-p~~~~~-----------  142 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRLR--------DFVWVALAVLGIWLLL-PLGQSV-----------  142 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc----cchh--------hHHHHHHHHHHHHhhe-eccCCc-----------
Confidence            999999999999999999999998887642    2222        4556667888998885 222211           


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          175 RNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       175 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                           ..-...|..+++.++.||+.|.+..||..+.. +..+-+...+.+++++..|+.....+
T Consensus       143 -----~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag  200 (292)
T COG5006         143 -----WSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG  200 (292)
T ss_pred             -----CcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc
Confidence                 12224899999999999999999999988755 45677888899999999999975544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.34  E-value=9.1e-11  Score=104.26  Aligned_cols=135  Identities=12%  Similarity=0.125  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT   92 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   92 (269)
                      ..+.++.++++++|+.+.+..|...+ +.++..... ...++++++.++......  ....+...+...+..|+++..++
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999876 578877654 445666666666554332  12245555556678999999999


Q ss_pred             HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323           93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV  157 (269)
Q Consensus        93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  157 (269)
                      +.++++++++.+++.++.+.+++|+++.++++++++|+++..      +++|.++.++|+.....
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999995      99999999999999863

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.32  E-value=8.4e-11  Score=104.42  Aligned_cols=136  Identities=19%  Similarity=0.188  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT   92 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   92 (269)
                      ..+.++.++++++|+...+..|....  -++...+.++..++++.+.++....+.......+.+.|......++++..++
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999998653  3456677888888888887776544322111235677888899999998999


Q ss_pred             HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +.+|+.++++.++++++.+.+++|+++++++++++||+++..      +++|.++.+.|+.++.
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999995      9999999999999986

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.29  E-value=3e-11  Score=92.25  Aligned_cols=103  Identities=19%  Similarity=0.313  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccc--CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHH
Q 024323           48 TYRHIVAGIAMFPFAYFLERKI--RPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVV  125 (269)
Q Consensus        48 ~~r~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~  125 (269)
                      .+|+..+.+++..+...+++..  .+..+.+.+.+....|+++...++.+++.|+++.+ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5899999999888777644321  12234455566777788877789999999999999 58889999999999999999


Q ss_pred             HhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323          126 LRLETLDLRNARGMAKVLGTLVSLAGVTIMTV  157 (269)
Q Consensus       126 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  157 (269)
                      ++|||++++      ++.|++++++|+.++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999997      99999999999999973

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.24  E-value=6e-10  Score=101.62  Aligned_cols=134  Identities=9%  Similarity=0.166  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcccC----CcCCHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNP-HVYVTYRHIVAGIAMFPFAYFLERKIR----PKLTLALFLEIFVLSLVGV   89 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p-~~~~~~r~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~   89 (269)
                      +.+++++++++|+...+..|...+ ++++ ...+++....+.+.+.+.....++...    ...+.. ...++..+++ .
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-T  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-H
Confidence            678899999999999999999877 4655 456667766666666555444332111    112222 2335556665 4


Q ss_pred             HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323           90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV  157 (269)
Q Consensus        90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  157 (269)
                      .+++.+|++++++.+|+.+++..+++|++++++++++++|+++..      +++|.++.+.|+.++..
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999999995      99999999999999863

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.21  E-value=5.8e-10  Score=99.20  Aligned_cols=132  Identities=11%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT   92 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   92 (269)
                      ..+.+++++++++|+.+.+..|...+ +.++.....   ..+.+.+.+.....+ ......+.+.|......++ ...++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~  228 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG  228 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence            34789999999999999999999765 578765432   233333333333322 1122356677777777775 56789


Q ss_pred             HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +.+|+.++++.+++.++.+.+++|+++.++++++++|+++..      +++|.++.+.|+.+..
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            999999999999999999999999999999999999999995      9999999999998875

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.17  E-value=2e-09  Score=95.89  Aligned_cols=137  Identities=18%  Similarity=0.231  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHhhccc-----CCcCCHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMN---PHVYVTYRHIVAGIAMFPFAYFLERKI-----RPKLTLALFLEIFVL   84 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~---p~~~~~~r~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~   84 (269)
                      ..+.++.++++++|+...+..|...++ .+   ......+....+.+.+.......+...     ....+.+.|..+++.
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            368899999999999999999997642 33   233344444444443333333222211     123567788889999


Q ss_pred             HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      |+++..+++.+|+.++++.++++++.+.+++|+++.++++++++|+++..      +++|.++.++|+.+..
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999995      9999999999998875

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.14  E-value=3.8e-10  Score=100.34  Aligned_cols=135  Identities=19%  Similarity=0.242  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 024323           84 LSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAA  163 (269)
Q Consensus        84 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~  163 (269)
                      ...+ -+++++.+..++++++++..+++.++.-+|+..++.++.+||++..      +++++.+.++|+++++.  ++..
T Consensus       165 fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~--~~s~  235 (416)
T KOG2765|consen  165 FCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTM--GDSK  235 (416)
T ss_pred             HHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEe--cccc
Confidence            3444 4688999999999999999999999999999999999999999995      99999999999999973  2111


Q ss_pred             CCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC---CchhHHHHHHHHHHHHHHHHHHHhc
Q 024323          164 RNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP---AQLSLTTWMCFLGAAQSAVFTVIVA  237 (269)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~  237 (269)
                      +.         + +..+.+...|+++++++|+.||+|+++.||-..+.+   +......+.-++..+++.|...+.+
T Consensus       236 ~~---------~-~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~  302 (416)
T KOG2765|consen  236 QN---------S-DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD  302 (416)
T ss_pred             cc---------c-cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            11         1 113445579999999999999999999998877663   2222233333455566666666543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.09  E-value=4.1e-08  Score=87.70  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=138.2

Q ss_pred             HHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 024323           31 FITEASFN-HGMN--PHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTF  107 (269)
Q Consensus        31 ~~~k~~~~-~~~~--p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~  107 (269)
                      +..+.... +.-+  |..+++.++....+.-.+.....+++..   ++..+..+...+++. .++..+-+.+++|++...
T Consensus        17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~   92 (303)
T PF08449_consen   17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS---RKIPLKKYAILSFLF-FLASVLSNAALKYISYPT   92 (303)
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC---CcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHH
Confidence            44454443 2334  8899999998888876665444331222   222234556667664 578889999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHH
Q 024323          108 VASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGS  187 (269)
Q Consensus       108 a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  187 (269)
                      -.++-...|+.+++++.+++|+|.+++      ++.++++..+|+.+....+......          ++....+...|+
T Consensus        93 ~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~~~~~G~  156 (303)
T PF08449_consen   93 QIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSFSSALGI  156 (303)
T ss_pred             HHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccccchhHH
Confidence            999999999999999999999999996      9999999999999986422211110          000112223499


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHH
Q 024323          188 FLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVI  235 (269)
Q Consensus       188 ~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~  235 (269)
                      .+.+++.++.|...+.+++..++++ ++.+.+++...++.+...+....
T Consensus       157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  157 ILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988876 77888999999999988877776

; GO: 0055085 transmembrane transport

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.07  E-value=1.2e-09  Score=96.44  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPH----VYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVG   88 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~----~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   88 (269)
                      .++..+.++++++|+.+.+..|...+ +.++.    ....+.....++.+.+.....+.+... .....+......+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMF-PYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHH
Confidence            45777889999999999998887643 34442    233333333322222222211221111 1222334556667676


Q ss_pred             HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Q 024323           89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTI  154 (269)
Q Consensus        89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  154 (269)
                      ..+++.++++++++.+++.++.+.+++|+++.+++++++||+++.+      +++|.++.++|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            7889999999999999999999999999999999999999999996      99999999999976

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.02  E-value=4.5e-09  Score=93.65  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcC---------CH-HHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNH-GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKL---------TL-ALFLE   80 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~-~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~---------~~-~~~~~   80 (269)
                      +..|.++.++++++|+...+..|...++ ++||...+.+....+++.+.|+....+.......         .. ..+..
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            3458899999999999999999987641 4899999999999999998888765432111000         00 11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323           81 IFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV  157 (269)
Q Consensus        81 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  157 (269)
                      .+..+.......+.+++.+++++++..+++..++.|++++++++++++|+++.+      +++|.+++++|+.+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            222333223334457778999999999999999999999999999999999996      99999999999999863

specificities overlap.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.97  E-value=6.4e-08  Score=83.76  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323           74 TLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT  153 (269)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  153 (269)
                      ++++..++..=+++ ..+.+.+.+.++++.+|+.-.++..+..++|++++++++|+|++++      ||.++.+.++|+.
T Consensus        13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            45566677777777 4689999999999999999999999999999999999999999997      9999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHH
Q 024323          154 IMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVF  232 (269)
Q Consensus       154 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~  232 (269)
                      ++-. ++... .+.++..+.+ .+....+...|.++.+.++++-+...++..|..|+.+ +...........|.++.++.
T Consensus        86 lv~~-~~~~~-~~~~~~~~~~-~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~  162 (244)
T PF04142_consen   86 LVQL-SSSQS-SDNSSSSSVH-HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA  162 (244)
T ss_pred             eeec-CCccc-cccccccccc-cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            9852 22111 0000000000 0112345578999999999999999999999999865 34444555566677776666


Q ss_pred             HHHhc
Q 024323          233 TVIVA  237 (269)
Q Consensus       233 ~~~~~  237 (269)
                      ....+
T Consensus       163 ~~~~~  167 (244)
T PF04142_consen  163 LLLSD  167 (244)
T ss_pred             Hhccc
Confidence            54433

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.86  E-value=1.1e-07  Score=84.58  Aligned_cols=132  Identities=14%  Similarity=0.131  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHH
Q 024323           17 LLMVLAQLSYTFLYFITEASFNHG-MNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNM   95 (269)
Q Consensus        17 l~~l~a~~~w~~~~~~~k~~~~~~-~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   95 (269)
                      ...++++++|+.+.+..|....++ .++.....+....+.....+.... ........+...+......|+. ..+++.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence            356788999999999988864311 223333444444444332222110 0000111223333444555654 5689999


Q ss_pred             HHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           96 YFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        96 ~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ++.++++.+++.++.+.+++|+++.++++++++|+++.+      +++|.++.++|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999996      9999999999998876

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.85  E-value=2.1e-07  Score=81.36  Aligned_cols=133  Identities=18%  Similarity=0.254  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVT-YRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL   91 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~-~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   91 (269)
                      ..+..+.+.+++.|+.+.+..|...  +.++..... +.+..+.....+..  ..... .+...+.+......|+++...
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999876  367766666 44442222222221  11111 345677788889999998878


Q ss_pred             HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ++.+++.++++.+++.++.+.++.|++..++++++++|+++.+      +++|+++.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999996      9999999999999885

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.81  E-value=3.1e-07  Score=83.77  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=101.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcccCC--------cCCHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNH------GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP--------KLTLAL   77 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~------~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~--------~~~~~~   77 (269)
                      +..|.+++++++++|+...+..|...++      +.++.....+....++++++|+....+.....        ..+...
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4568999999999999999999998752      25677777777888998888887644321100        000101


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323           78 FLEIFVLSLVGVTLTLNMYF----ASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT  153 (269)
Q Consensus        78 ~~~~~~~g~~~~~~~~~~~~----~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  153 (269)
                      +...... ++...+.+.++.    .+++++++...++..++.|+++.++++++++|+++..      +++|.++++.|+.
T Consensus       272 ~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~  344 (350)
T PTZ00343        272 KGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGAL  344 (350)
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHH
Confidence            1112222 222234444444    6999999999999999999999999999999999995      9999999999998


Q ss_pred             HHH
Q 024323          154 IMT  156 (269)
Q Consensus       154 ll~  156 (269)
                      +..
T Consensus       345 lYs  347 (350)
T PTZ00343        345 LYS  347 (350)
T ss_pred             HHh
Confidence            864

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.80  E-value=3.1e-10  Score=96.20  Aligned_cols=171  Identities=19%  Similarity=0.266  Sum_probs=136.1

Q ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHH
Q 024323           40 GMN-PHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAV  118 (269)
Q Consensus        40 ~~~-p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~  118 (269)
                      ++| |...++..+..-+++--++..++.+  .   -+..|..+++++++.+ -++.+...|.||++.+.+.++-.-.-..
T Consensus        44 ~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~--~---~~~~~~hYilla~~DV-EaNy~vV~AyQyTsmtSi~lLDcwaip~  117 (336)
T KOG2766|consen   44 GINAPTSQTFLNYVLLALVYGPIMLFRRK--Y---IKAKWRHYILLAFVDV-EANYFVVKAYQYTSMTSIMLLDCWAIPC  117 (336)
T ss_pred             cCCCccHHHHHHHHHHHHHHhhHHHhhhH--H---HHHHHHHhhheeEEee-cccEEEeeehhhcchHHHHHHHHhhhHH
Confidence            455 7778888888888887777665432  1   1222345788888875 6677788999999999999998888888


Q ss_pred             HHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHH
Q 024323          119 TFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWS  198 (269)
Q Consensus       119 ~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a  198 (269)
                      +.+++|+++|.|-+.      .|+.|++++++|+..+++++-..  .+          ..++.+..+|+++.+++|.+||
T Consensus       118 v~~lsw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~a--gd----------~aggsnp~~GD~lvi~GATlYa  179 (336)
T KOG2766|consen  118 VLVLSWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVHA--GD----------RAGGSNPVKGDFLVIAGATLYA  179 (336)
T ss_pred             HHHHHHHHHHHHHhh------heeeeEEeEecceEEEEEeeecc--cc----------ccCCCCCccCcEEEEecceeee
Confidence            899999999999999      59999999999999998543221  11          1145666799999999999999


Q ss_pred             HHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHH
Q 024323          199 AMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVI  235 (269)
Q Consensus       199 ~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  235 (269)
                      +.++....+.|+. +..+++....++|+++..+....
T Consensus       180 VSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~  215 (336)
T KOG2766|consen  180 VSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIF  215 (336)
T ss_pred             eccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999987 57888998999999999888443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.79  E-value=1.2e-07  Score=84.31  Aligned_cols=130  Identities=15%  Similarity=0.192  Sum_probs=101.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHI---VAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVG   88 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   88 (269)
                      .+|+++..+++++.++.+....|..   +.||...++....   +++.++.+..  + + .++ .+.+..+.....|++ 
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~-~~~~~~~~~~~~Gi~-  220 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKP-LKKYAILLNILPGLM-  220 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-ccc-hHHHHHHHHHHHHHH-
Confidence            3679999999999999999999975   4788888555443   3444333322  1 1 112 223333344558888 


Q ss_pred             HHHHHHHHHHHhh-ccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHH----HHHHHHHHHHHHHH
Q 024323           89 VTLTLNMYFASLR-YTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKV----LGTLVSLAGVTIMT  156 (269)
Q Consensus        89 ~~~~~~~~~~al~-~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~ll~  156 (269)
                      ..+++.+|+.+.+ +.+++.++.+...+|+...+++++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            5799999999999 999999999999999999999999999999997      88    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.71  E-value=9.1e-07  Score=70.58  Aligned_cols=133  Identities=17%  Similarity=0.301  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcccCC----cC-------CHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNH------GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP----KL-------TLAL   77 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~------~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~----~~-------~~~~   77 (269)
                      |.++++.+.++-+...+..|...++      +.++.....+....+.+++++.....+.....    ..       ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            3567889999999999999987754      68999999999999999999987776543211    01       2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Q 024323           78 FLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTI  154 (269)
Q Consensus        78 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  154 (269)
                      +..+...|+++ ...+...+..+++++|...+++..+-.+++.++++++++|+++.+      +++|.+++++|+.+
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            45566667775 578889999999999999999999999999999999999999996      99999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.64  E-value=6e-05  Score=67.35  Aligned_cols=209  Identities=13%  Similarity=0.107  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcc----cCCc------CCHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHG---MNPHVYVTYRHIVAGIAMFPFAYFLERK----IRPK------LTLALFLE   80 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~---~~p~~~~~~r~~~a~l~l~~~~~~~~~~----~~~~------~~~~~~~~   80 (269)
                      .-.+.++...+.++......|..-..+   ..|...++.--.+-.++...+.+...++    ..+.      ..+++..+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            344566677888999999999876544   5677777777777777766665554321    1111      13334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcC
Q 024323           81 IFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKG  160 (269)
Q Consensus        81 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~  160 (269)
                      ...=+++ .++.+.++|.++.+.+++.-.+...+--+.|+++..+++++|++++      ||.+.++..+|+.++-. ..
T Consensus        95 ~~vPa~i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~-~~  166 (345)
T KOG2234|consen   95 VSVPALI-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQL-PS  166 (345)
T ss_pred             HHHHHHH-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhc-cC
Confidence            5555556 4678889999999999999999999999999999999999999996      99999999999999841 11


Q ss_pred             CCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          161 PAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                      +....       ..++ ....+...|....+.++.+-+...++..++.|+.. +.+..+.-..++|.++.....+..+.
T Consensus       167 ~~~~~-------a~~~-~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~  237 (345)
T KOG2234|consen  167 LSPTG-------AKSE-SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG  237 (345)
T ss_pred             CCCCC-------ccCC-CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            11111       0101 13456678999999999999999999999988754 33333444456676666666655443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.64  E-value=7.1e-07  Score=75.91  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHH
Q 024323           13 FKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLT   92 (269)
Q Consensus        13 ~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   92 (269)
                      -.+..+.+.+..+|+.+.+..|.+.+ ..+-..-+..-+.+++++.+|+-.-......  .+++-...-...|+++..+.
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l--~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPAL--FSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhh--cChHHHHHHHHHHHHhcccc
Confidence            36788999999999999999999875 4677788888999999999998764433222  45565566778899999999


Q ss_pred             HHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323           93 LNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM  155 (269)
Q Consensus        93 ~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  155 (269)
                      |.+-..++++.|...-+++++++|.+.++.++++++|+++..      ||.++...+++..=.
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~  280 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS  280 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999996      999999887776543

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.60  E-value=5.3e-07  Score=68.56  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           82 FVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        82 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ...++++..+.+.++..++++.|.+.+..+.++.|+++.+++++++|||++.+      +++|+.++++|+.++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            34455777889999999999999999999999999999999999999999997      9999999999999874

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.38  E-value=2e-05  Score=68.98  Aligned_cols=170  Identities=16%  Similarity=0.211  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccc---CCcCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHH
Q 024323           43 PHVYVTYRHIVAGIAMFPFAYFLERKI---RPKLTLALFL-EIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAV  118 (269)
Q Consensus        43 p~~~~~~r~~~a~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~  118 (269)
                      |+..+.+..++=.++-...-...+++.   +....|++.. +..-.|+. .++.-.+..++++|++.+.-++.=+..++|
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHH
Confidence            788888877665554433222222211   1245666544 34555665 468888999999999999999999999999


Q ss_pred             HHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHH
Q 024323          119 TFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWS  198 (269)
Q Consensus       119 ~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a  198 (269)
                      +.+++.++.-||+++.      -..-+++..+|+++++ +++                  .+.+ ..|..+.+.|+++-+
T Consensus       124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~Ks------------------Tqf~-i~Gf~lv~~aS~~sG  177 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKS------------------TQFN-IEGFFLVLAASLLSG  177 (349)
T ss_pred             HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecc------------------ccee-ehhHHHHHHHHHhhh
Confidence            9999999999999994      6777777788888876 332                  1222 479999999999999


Q ss_pred             HHHHHHHHHHhhCC----CchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323          199 AMYIMQAITLKRYP----AQLSLTTWMCFLGAAQSAVFTVIVARK  239 (269)
Q Consensus       199 ~~~v~~k~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~  239 (269)
                      +--...+.+.|+.|    +|........-.-.+.++|..+.+|++
T Consensus       178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence            88888888877754    566666655555666677888888874

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.36  E-value=2.1e-06  Score=76.60  Aligned_cols=180  Identities=15%  Similarity=0.118  Sum_probs=137.6

Q ss_pred             HHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh
Q 024323           33 TEASFN--HGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS  110 (269)
Q Consensus        33 ~k~~~~--~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~  110 (269)
                      -|..++  ..--|..++..+...+.+.++..-..+..+..+..++..+..++..|++. +++..+-..++++.+++....
T Consensus        36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHHH
Confidence            355555  22348888888777777776655443322222222445567788888885 588889999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHH
Q 024323          111 VVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLT  190 (269)
Q Consensus       111 l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~  190 (269)
                      +=.++|.++.++++++.+|+.+.+      .++.++....||.+.+.  ++                 .+.+ ..|...+
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~e-----------------~~fn-~~G~i~a  168 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--TE-----------------LSFN-LFGFISA  168 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--cc-----------------cccc-HHHHHHH
Confidence            999999999999999999999996      78888888888888752  11                 2234 4899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hCC-CchhHHHHHHHHHHHHHH-HHHHHhcCC
Q 024323          191 IASSITWSAMYIMQAITLK--RYP-AQLSLTTWMCFLGAAQSA-VFTVIVARK  239 (269)
Q Consensus       191 l~aa~~~a~~~v~~k~~~~--~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~  239 (269)
                      +.+.+..+..++++|+..+  +.. +++....++.-++...++ |.....|++
T Consensus       169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~  221 (316)
T KOG1441|consen  169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN  221 (316)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc
Confidence            9999999999999999985  332 788888888888888888 777665554

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.33  E-value=2e-05  Score=61.54  Aligned_cols=118  Identities=20%  Similarity=0.256  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL   93 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   93 (269)
                      +++++++...++-+..-++.|...+ +.+........  ...+.    . .     .  .+    ...+..|+++..+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~-~~g~~~~~~~~--~~~~~----~-~-----~--~p----~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMS-RLPLLSHAWDF--IAALL----A-F-----G--LA----LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHh-hCCCccchhHH--HHHHH----H-H-----h--cc----HHHHHHHHHHHHHHH
Confidence            3567777787888888899998876 34433322211  00000    0 0     0  01    124678888889999


Q ss_pred             HHHHHHhhccCchhhhhhhhhhHHHHHHHHHH--HhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           94 NMYFASLRYTSPTFVASVVNTVAAVTFVIAVV--LRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        94 ~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .+|..++++.+.+.+..+.+..+.++.+.++.  ++||+++.+      +++|+++.++|+.++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888885  899999996      9999999999999985

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.31  E-value=1.7e-05  Score=71.46  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=108.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCC--cCCHHHHHHHHHHHHHH
Q 024323           11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP--KLTLALFLEIFVLSLVG   88 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~   88 (269)
                      ++.+|-++++.+++++|.+.+..+...+ +.|+.++..+--+.+.++..+.....+++...  +++.+....++.. .++
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~  242 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALC  242 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHH
Confidence            4568899999999999999999999887 58888888777777777766665555554333  3444443333333 334


Q ss_pred             HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .+..+.+.-..+++++|+...+=..+..+++.+++.+++|+++++.      .++|.++..+|.++..
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYN  304 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEE
Confidence            4567777788899999998888888899999999999999999994      9999999999999875

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.30  E-value=4.9e-05  Score=65.85  Aligned_cols=194  Identities=15%  Similarity=0.182  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---CCC----ChHHHHHHHHHHHHHHHHHHHHHhhcccCCc-------------CCHH
Q 024323           17 LLMVLAQLSYTFLYFITEASFN---HGM----NPHVYVTYRHIVAGIAMFPFAYFLERKIRPK-------------LTLA   76 (269)
Q Consensus        17 l~~l~a~~~w~~~~~~~k~~~~---~~~----~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~-------------~~~~   76 (269)
                      ++.++-...=+.+.+++|.+-+   ++-    +|+..+..-++.=+++++.+..++.+...+.             .+.+
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            3344444555677788887521   122    4777777777777777777666655422210             0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           77 LFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        77 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      . ...+.=+++.. .+..+.|.|+.+++++.-.++-...-+|+.+++.-+++++++.+      ||+|+.....|++++.
T Consensus        86 p-~lfl~Pal~Di-~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg  157 (372)
T KOG3912|consen   86 P-VLFLPPALCDI-AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVG  157 (372)
T ss_pred             c-ceecChHHHHH-hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheee
Confidence            1 11222455554 56678889999999999999999999999999999999999997      9999999999999884


Q ss_pred             HhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHH
Q 024323          157 VYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQ  228 (269)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~  228 (269)
                      ..+-...   .++ .      ..-.+.+.|+.+.+.|=+.-|.-.++..|..++.. +|.....+.-++|.++
T Consensus       158 ~~d~~~~---~~p-~------~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~  220 (372)
T KOG3912|consen  158 SLDVHLV---TDP-Y------TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVI  220 (372)
T ss_pred             eeecccc---cCC-c------cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHH
Confidence            2111110   000 0      01245578999999999999999999999888865 8899999998888544

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.06  E-value=0.00061  Score=61.70  Aligned_cols=176  Identities=15%  Similarity=0.149  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHHHHHHH--HHHhhcc---cCCcCCHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHI-VAGIAMFPF--AYFLERK---IRPKLTLALFLEIFVLS   85 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~-~a~l~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~g   85 (269)
                      ..-+++.++++.++||..++-.|.. + ..|-..+ +.-.. ++.+ +.|+  .....+.   .....+.+.+..-++.|
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k-~w~wE~~-W~v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-K-KWSWETM-WSVGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-C-CCchhHH-HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            4568999999999999999999994 3 4553333 21111 1111 1111  1111111   11225666767777778


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhh-hhhHHHHHHHHHHHhcccc---ccccccchhHHHHHHHHHHHHHHHHHhcCC
Q 024323           86 LVGVTLTLNMYFASLRYTSPTFVASVV-NTVAAVTFVIAVVLRLETL---DLRNARGMAKVLGTLVSLAGVTIMTVYKGP  161 (269)
Q Consensus        86 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~P~~~~i~a~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  161 (269)
                      .+- .+++..++.++++.+.+.+.-+. .++-+++.++..++++|-.   +..  ....-.+|+++.++|+.+... .+.
T Consensus        81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~-Ag~  156 (345)
T PRK13499         81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGR-AGQ  156 (345)
T ss_pred             HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHH-hhh
Confidence            775 58999999999999999887774 4888999999999998754   221  123478899999999999863 111


Q ss_pred             CCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHH
Q 024323          162 AARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMY  201 (269)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  201 (269)
                      ..+.      +.+.|.....+..+|...++++.+.+++|+
T Consensus       157 ~k~~------~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        157 LKER------KMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             hccc------ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            1000      000000133566799999999999999999

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.96  E-value=0.0011  Score=57.88  Aligned_cols=126  Identities=13%  Similarity=0.078  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhH---HHHHHHHHH
Q 024323           75 LALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAK---VLGTLVSLA  150 (269)
Q Consensus        75 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~---~~g~~l~~~  150 (269)
                      .+.+...++.|++- .+++...+.+.++.+.+.+.-+.. ++-+.+.++++++++|--+.+     ..   .+++++.++
T Consensus        42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~-----~~~~G~~Al~liii  115 (269)
T PF06800_consen   42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTT-----QKIIGFLALVLIII  115 (269)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcc-----hHHHHHHHHHHHHH
Confidence            36667777888885 589999999999999999998875 666779999999999988875     22   236677777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHH
Q 024323          151 GVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWM  221 (269)
Q Consensus       151 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~  221 (269)
                      |+.+... +.+..+           +..+..+...|....+++.+.|..|.+..|.. + . ++.+...-+
T Consensus       116 Gv~lts~-~~~~~~-----------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-~-~-~~~~~~lPq  171 (269)
T PF06800_consen  116 GVILTSY-QDKKSD-----------KSSSKSNMKKGILALLISTIGYWIYSVIPKAF-H-V-SGWSAFLPQ  171 (269)
T ss_pred             HHHHhcc-cccccc-----------ccccccchhhHHHHHHHHHHHHHHHHHHHHhc-C-C-ChhHhHHHH
Confidence            8877652 221111           00123455689999999999999999996652 2 2 555555444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.85  E-value=0.00043  Score=60.09  Aligned_cols=105  Identities=9%  Similarity=0.051  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCc-CCHHHHHHHHHHHHHHHHHHHHHH
Q 024323           18 LMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPK-LTLALFLEIFVLSLVGVTLTLNMY   96 (269)
Q Consensus        18 ~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~   96 (269)
                      ..+.++++|+.+.+..|...+  .++........ ....+..+............ ...++|...+..|++ ..+++.++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~  225 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHH
Confidence            567889999999999988653  23322222111 11111111111111111111 233478888888887 56899999


Q ss_pred             HHHhhccCchhhhhhhhhhHHHHHHHHHHH
Q 024323           97 FASLRYTSPTFVASVVNTVAAVTFVIAVVL  126 (269)
Q Consensus        97 ~~al~~~~~~~a~~l~~~~P~~~~i~a~~~  126 (269)
                      +.++++.+++.++.+.+++|+++.++++++
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.82  E-value=0.00053  Score=59.85  Aligned_cols=132  Identities=11%  Similarity=0.141  Sum_probs=89.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHhhcccCCcCCHHHHHHHHHHHHHHH
Q 024323           11 LRFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAM-FPFAYFLERKIRPKLTLALFLEIFVLSLVGV   89 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   89 (269)
                      +.+|+++.++++.+.+..+..+.|..   +.|+.....=+. ++.++- ..+....++   +..+++. ++-.+.|++- 
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~~~~---~~~~k~~-~~nil~G~~w-  205 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNLFSKK---PFFEKKS-WKNILTGLIW-  205 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhhcccc---cccccch-HHhhHHHHHH-
Confidence            45678999999999999988888874   477766666442 222222 222222211   1123333 3335667664 


Q ss_pred             HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323           90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT  153 (269)
Q Consensus        90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  153 (269)
                      ..++.+++.+.+..+.+.+-.+.-+.+++..+.+.+++||+=++||  -...++|+++.++|..
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhhh
Confidence            5788999999999999999999999999999999999999988862  1223445555555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.0038  Score=55.28  Aligned_cols=178  Identities=13%  Similarity=0.109  Sum_probs=128.6

Q ss_pred             HHHHHHHhCCCC-hHHHH--HHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 024323           31 FITEASFNHGMN-PHVYV--TYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTF  107 (269)
Q Consensus        31 ~~~k~~~~~~~~-p~~~~--~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~  107 (269)
                      +.=|.++. .++ |..+.  ..+.+.+.+.+...-..+. -+.++.+++..++.+-..++- .+....-..+++|.+...
T Consensus        29 vvNK~vls-~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-v~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVpm  105 (314)
T KOG1444|consen   29 VVNKIVLS-SYNFPMGLLLMLLQSLASVLVVLVLKRLGL-VNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVPM  105 (314)
T ss_pred             HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHHhce-eecCCcChHHHHHHccHHHHH-HHHHHHccccccccCchH
Confidence            33455555 232 44444  4899988887766533222 234556676666666556553 344455567889999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHH
Q 024323          108 VASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGS  187 (269)
Q Consensus       108 a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  187 (269)
                      -+++=...|+++++...+++|.+++.+      .+.++....+|.......  +                 .+.+ ..|.
T Consensus       106 ~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~--d-----------------~sf~-~~gY  159 (314)
T KOG1444|consen  106 FTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT--D-----------------LSFN-LRGY  159 (314)
T ss_pred             HHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc--c-----------------ceec-chhH
Confidence            999999999999999999999999985      888888888887776521  1                 1122 2589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhc
Q 024323          188 FLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVA  237 (269)
Q Consensus       188 ~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~  237 (269)
                      .+++...++-+.+.+..|+..+... +......+..+...+......++.+
T Consensus       160 ~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~g  210 (314)
T KOG1444|consen  160 SWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITG  210 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhc
Confidence            9999999999999999999877644 5577888888888888777776654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.75  E-value=6.1e-05  Score=62.12  Aligned_cols=97  Identities=13%  Similarity=0.230  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323           90 TLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHP  169 (269)
Q Consensus        90 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  169 (269)
                      +++++.|..+++..+++.++.+......|+.+++++++|+|+..      .++++.++++.|++.+.. ...        
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay-~DN--------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAY-ADN--------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEe-ccc--------
Confidence            46788999999999999999999999999999999999999999      499999999999998862 111        


Q ss_pred             CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024323          170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKR  210 (269)
Q Consensus       170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~  210 (269)
                               ...+...|..++..++..-|+|-+..|+....
T Consensus       129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                     23344689999999999999999999988654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.70  E-value=0.0025  Score=55.71  Aligned_cols=128  Identities=13%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhccc--CCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 024323           19 MVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKI--RPKLTLALFLEIFVLSLVGVTLTLNMY   96 (269)
Q Consensus        19 ~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~   96 (269)
                      .+..++.|+.++..=|..   ++|+.+-...-...-.+..+...+......  ....+.+.+..+...|.+. ++...+|
T Consensus       153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf  228 (293)
T COG2962         153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence            345567788877776664   477766655555544444444333333222  1123566778888899995 6999999


Q ss_pred             HHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           97 FASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        97 ~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ..|-++.+-+...+++|.+|....+++.+++||+++..      +..+-+....|+++.+
T Consensus       229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999994      9999999999998876

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.62  E-value=0.0024  Score=56.97  Aligned_cols=135  Identities=16%  Similarity=0.245  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhccc--CC--cCCHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFN-HGMNPHVYVTYRHIVAGIAMFPFAYF--LERKI--RP--KLTLALFLEIFVLSLV   87 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~-~~~~p~~~~~~r~~~a~l~l~~~~~~--~~~~~--~~--~~~~~~~~~~~~~g~~   87 (269)
                      |+++++++.++-|......+...+ .+.++.+..++-...+.+..++....  .+...  .+  ...++.+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            899999999999999999998774 35788999999999988887776655  22111  00  1122233444555555


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      + .+.+.+.+...++.++...+++..+--+++.+++.++++++++..      +|.|+++.+.|..+-.
T Consensus       235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            4 467777788899999999999999999999999999999999995      9999999999999875

; GO: 0055085 transmembrane transport

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.44  E-value=0.0049  Score=48.65  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 024323           18 LMVLAQLSYTFLYFITEASFNHGMN-PHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMY   96 (269)
Q Consensus        18 ~~l~a~~~w~~~~~~~k~~~~~~~~-p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   96 (269)
                      ..+++...-+....+=....+ ..+ |...+++.+..+.+.+..+....+++..+..+... ++...-|+++. ..-.+.
T Consensus         5 la~~aG~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~-~~V~~~   81 (138)
T PF04657_consen    5 LALLAGALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGV-FFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHH-HHHHHH
Confidence            334444444444333333333 354 99999999999999988777766554332222222 33445677764 677788


Q ss_pred             HHHhhccCchhhhhhhhhhHHH-HHHHHHH----HhccccccccccchhHHHHHHHHHHHHHH
Q 024323           97 FASLRYTSPTFVASVVNTVAAV-TFVIAVV----LRLETLDLRNARGMAKVLGTLVSLAGVTI  154 (269)
Q Consensus        97 ~~al~~~~~~~a~~l~~~~P~~-~~i~a~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  154 (269)
                      ...+.+.+++.+..+....-++ ..++..+    .-|++++.+      +++|+++.++|+.+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            8899999999888877755555 5555554    467888885      99999999999864

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.32  E-value=0.00068  Score=51.39  Aligned_cols=110  Identities=14%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024323           20 VLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFAS   99 (269)
Q Consensus        20 l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a   99 (269)
                      ++..++||.+.++.|.... +.++..-.. |..-.... +    .        .+++.     ...+.-.-.+...|+..
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-L----l--------~n~~y-----~ipf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-L----L--------LNPKY-----IIPFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-H----H--------HhHHH-----HHHHHHHHHHHHHHHHH
Confidence            4567899999999999876 455433331 31111111 0    0        11111     12333344667789999


Q ss_pred             hhccCchhhhhhh-hhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323          100 LRYTSPTFVASVV-NTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM  155 (269)
Q Consensus       100 l~~~~~~~a~~l~-~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  155 (269)
                      +.+.+.+.+.-+. ++.=++|++.++++.+|..+++      .++|+++.+.|+.+.
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            9999999999885 6888899999988888887876      899999999998764

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.29  E-value=0.011  Score=44.63  Aligned_cols=64  Identities=17%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323           86 LVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM  155 (269)
Q Consensus        86 ~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  155 (269)
                      +.+..+.+.+...++|+.|.+.+ ++.....-+.+.+.+.+++||+++..      +++|+.+.++|+..+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            44455788889999999998876 45566888999999999999999996      999999999999886

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.25  E-value=0.0025  Score=48.22  Aligned_cols=67  Identities=13%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           84 LSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        84 ~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ..+.+..+.+.++..++++.|.+.+=.+ ..+.-+.+.+++++++||+++..      +++|+.+.++|+..+-
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3455566788889999999998877555 66888899999999999999995      9999999999999985

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.0022  Score=47.89  Aligned_cols=66  Identities=27%  Similarity=0.283  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           85 SLVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        85 g~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .+++....+.+.-.++|+.|.+.+ ++.....-+.+.+.+++++||+++..      +++|+.+.++|+..+-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            444456788899999999998866 56677899999999999999999995      9999999999999884

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.22  E-value=0.0024  Score=49.04  Aligned_cols=67  Identities=19%  Similarity=0.230  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           84 LSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        84 ~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ..+.+..+.+.++..++++.|.+.+=.+ ....-+.+.+++.+++||+++..      +++|+.+.++|+..+-
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            3455566888999999999999877665 56888999999999999999996      9999999999998885

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.19  E-value=0.0046  Score=55.89  Aligned_cols=139  Identities=13%  Similarity=0.227  Sum_probs=110.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhc---ccCCcCCHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNH---GMNPHVYVTYRHIVAGIAMFPFAYFLER---KIRPKLTLALFLEIFVLS   85 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~---~~~p~~~~~~r~~~a~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~g   85 (269)
                      ...|-++.+++++.+|.+.+..|.-.++   ++|...+-.+--+...++++|..+....   .+..-++..+...++..+
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~  324 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN  324 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence            3568899999999999999999986542   3666666677777777777765554322   122223334445678889


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           86 LVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        86 ~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +++..+..++|..|.-.+++-.+++=+.++--..++...++.+.++++      ..++|.+..++|-+++.
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~------~~iiGsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA------LYIIGSIPIFVGFVIVN  389 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH------HHHHHHHHHHHHHhhee
Confidence            999999999999999999999999988877778888888899999999      59999999999998886

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.08  E-value=0.0049  Score=46.24  Aligned_cols=65  Identities=12%  Similarity=0.126  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           86 LVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        86 ~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +.+...++.+...++|+.|.+.+ ++.....-+.+.+++.+++||+++..      +++|+.+.++|+..+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            44456788899999999998866 45566888999999999999999995      9999999999999874

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.01  E-value=0.0054  Score=54.77  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL   91 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   91 (269)
                      ..-|....+.++++-+....+.|....+ .+.   ...|              .+++.++..+.+    ..+.|+....+
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~--------------~~~~~~~~l~~~----~W~~G~~~~~~   62 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR--------------AGSGGRSYLRRP----LWWIGLLLMVL   62 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc--------------ccchhhHHHhhH----HHHHHHHHHhc
Confidence            3457888888888888888888887542 111   0000              000000001111    23344444557


Q ss_pred             HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      +..+.+.++...|++..+-+..+.-++.++++..++|||++++      .+.|+++++.|..+++
T Consensus        63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIV  121 (300)
T ss_pred             chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeE
Confidence            7788899999999999999999999999999999999999996      9999999999998876

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.96  E-value=0.00052  Score=59.25  Aligned_cols=134  Identities=11%  Similarity=0.020  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL   93 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   93 (269)
                      ++....+.+++.-+..+++.|...+ +.+......+=..++.+.-+...........| ..++||+.+..+|+++ ++++
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfg-figQ  267 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFG-FIGQ  267 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhh-hHHH
Confidence            4567777788877888888888655 56655544444445444433333223333333 4667777888899997 5999


Q ss_pred             HHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           94 NMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        94 ~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .+...|+|.--++-++++.++.-+++.++-.++++|-+++      +.|.|+++.....+...
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeeeehhHHHHH
Confidence            9999999999999999999999999999999999999999      59999988777666654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.95  E-value=0.0033  Score=56.28  Aligned_cols=138  Identities=13%  Similarity=0.230  Sum_probs=110.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhcccC-----CcCCHHHHHHH
Q 024323           11 LRFKPLLLMVLAQLSYTFLYFITEASF---NHGMNPHVYVTYRHIVAGIAMF-PFAYFLERKIR-----PKLTLALFLEI   81 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~---~~~~~p~~~~~~r~~~a~l~l~-~~~~~~~~~~~-----~~~~~~~~~~~   81 (269)
                      -+..|.+.+..+.+..+.-.++.|..+   +.++|+.....+..-.+...++ |+....+....     ..++...+. .
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-L  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-H
Confidence            456799999999999999999999987   3358999999999999999988 88776554332     133444333 3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           82 FVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        82 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .+..++ ....+...|..+.+++|-+-++....-=.++...++++++|++++.      +.+|.++++.|+.+-.
T Consensus       239 ~~~sv~-~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVL-AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHH-HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            333444 4577788999999999999999998888888999999999999995      9999999999999975

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.81  E-value=0.005  Score=45.13  Aligned_cols=57  Identities=21%  Similarity=0.187  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHhhccCchhh-hhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHH
Q 024323           85 SLVGVTLTLNMYFASLRYTSPTFV-ASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLV  147 (269)
Q Consensus        85 g~~~~~~~~~~~~~al~~~~~~~a-~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l  147 (269)
                      .+.+..+.+.++..++++.|.+.+ ++...+..+.+.+.+.+++||+++.+      |+.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            344566788999999999999988 55677999999999999999999996      9998875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.023  Score=48.44  Aligned_cols=129  Identities=14%  Similarity=0.103  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323           88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG  167 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  167 (269)
                      ...++......++++.|=-...+=-+.-|+=++++++++.+++-+++      +...++..++||.+.. ++...-.+  
T Consensus        94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~g--  164 (337)
T KOG1580|consen   94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVGG--  164 (337)
T ss_pred             HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccCC--
Confidence            34577788889999998887777788999999999999999999997      9999999999999986 44322111  


Q ss_pred             CCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHH
Q 024323          168 HPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVI  235 (269)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~  235 (269)
                                ..+.....|+++.+++-..=+.....+.++.+.+. ...+.+....+-+.+.+....++
T Consensus       165 ----------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf  223 (337)
T KOG1580|consen  165 ----------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF  223 (337)
T ss_pred             ----------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee
Confidence                      12345568999999998888888888888777654 44556666666666665544443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.33  Score=42.97  Aligned_cols=172  Identities=13%  Similarity=0.123  Sum_probs=120.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHH
Q 024323           42 NPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFV  121 (269)
Q Consensus        42 ~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i  121 (269)
                      ++..+.+.+-+++.++-....  ...+... ..++.|..+...++-+ .+...|-|++++|.+=-...+-=..--+-+++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~~-~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml  125 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAML--KWWKKEL-SGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML  125 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH--hcccccC-CCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence            577888888888777654332  2222222 2333356667777776 47888999999999755555544444455778


Q ss_pred             HHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHH
Q 024323          122 IAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMY  201 (269)
Q Consensus       122 ~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  201 (269)
                      ++.++.|+|.+.+      +.+...+.-.|+.+..+.+...           +.++....+...|..+....-+.=+..+
T Consensus       126 mg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn  188 (327)
T KOG1581|consen  126 MGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----------SSSKSGRENSPIGILLLFGYLLFDGFTN  188 (327)
T ss_pred             HHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----------CccccCCCCchHhHHHHHHHHHHHhhHH
Confidence            8999999999997      7888888888988875322111           0111133455789999998888888999


Q ss_pred             HHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHH
Q 024323          202 IMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTV  234 (269)
Q Consensus       202 v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  234 (269)
                      ..+.++.+++. ++..++....+++++......+
T Consensus       189 ~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li  222 (327)
T KOG1581|consen  189 ATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI  222 (327)
T ss_pred             hHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh
Confidence            99999988765 7788888888888888776643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.00032  Score=59.80  Aligned_cols=167  Identities=14%  Similarity=0.198  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      .++.+++-++.||....+....   +-+|.+-+.---..|.++-+.+ ++..   .|..+.+.+..-+..|.+. ..++.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv-~~~~---~p~~T~~~~iv~~isG~~W-s~GQ~   74 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIV-FLFV---SPELTLTIFIVGFISGAFW-SFGQA   74 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHH-heee---cCccchhhHHHHHHhhhHh-hhhhh
Confidence            4677888999999988877765   3466666555444444443333 3322   2346667666666777775 58899


Q ss_pred             HHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhHH-H---HHHHHHHHHHHHHHhcCCCCCCCCCC
Q 024323           95 MYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAKV-L---GTLVSLAGVTIMTVYKGPAARNPGHP  169 (269)
Q Consensus        95 ~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~~-~---g~~l~~~Gv~ll~~~~~~~~~~~~~~  169 (269)
                      ..+.++++.+++.+.-+.. ++-+-+.+++++.++|-.+..      +. +   ++++.++|+.+-+. +.+...     
T Consensus        75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~------~~IlG~iAliliviG~~lTs~-~~~~nk-----  142 (288)
T COG4975          75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT------QIILGFIALILIVIGIYLTSK-QDRNNK-----  142 (288)
T ss_pred             hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch------hHHHHHHHHHHHHHhheEeee-eccccc-----
Confidence            9999999999999998876 777789999999999998884      33 2   33444455544331 111000     


Q ss_pred             CccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024323          170 PIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAIT  207 (269)
Q Consensus       170 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~  207 (269)
                            +..+..+.-.|....+.+.+.|-.|.+..+..
T Consensus       143 ------~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         143 ------EEENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             ------cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence                  01134455678888888999999998885543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.59  E-value=0.19  Score=45.69  Aligned_cols=144  Identities=14%  Similarity=0.073  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHH-HHHHHHh--hcccC-----Cc
Q 024323           11 LRFKPLLLMVLAQLSYTFLY-------FITEASFNHGMNPHVYVTYRHI---VAGIAM-FPFAYFL--ERKIR-----PK   72 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~-------~~~k~~~~~~~~p~~~~~~r~~---~a~l~l-~~~~~~~--~~~~~-----~~   72 (269)
                      +.+|+++.++++.+..+...       +..+.+.+.+.++.....-.+.   ++.++. +.++.++  +++..     ++
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            34689999999999988888       5555544446788777666665   444443 2222321  21111     11


Q ss_pred             CC----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh---hh-hhhHHHHHHHHHHHhccccccccccchhHHHH
Q 024323           73 LT----LALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS---VV-NTVAAVTFVIAVVLRLETLDLRNARGMAKVLG  144 (269)
Q Consensus        73 ~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~---l~-~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g  144 (269)
                      .+    .+......+.|++- ..++.+|..+-...+.+.+..   +. .+..++..+.+. ++||+=+..++.-|..++|
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            12    12222335556664 467778888888876665554   54 555577777777 5999988332334577899


Q ss_pred             HHHHHHHHHHHH
Q 024323          145 TLVSLAGVTIMT  156 (269)
Q Consensus       145 ~~l~~~Gv~ll~  156 (269)
                      +++.++|+.++.
T Consensus       329 ~vliI~g~~lig  340 (345)
T PRK13499        329 CVVIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998885

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.31  E-value=0.018  Score=48.70  Aligned_cols=171  Identities=11%  Similarity=0.127  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHH
Q 024323           44 HVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIA  123 (269)
Q Consensus        44 ~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a  123 (269)
                      +...+.+.+++.+.+..+-..+....+ ..+.+.|   +...++-+ +-.+.--.+++|.+...-+++-++.-+..+...
T Consensus        38 flll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~W---fpiSfLLv-~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE  112 (309)
T COG5070          38 FLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKW---FPISFLLV-VMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE  112 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhh---cCHHHHHH-HHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence            566777777777665544322211111 1112222   11222211 122234478999999999999999999999999


Q ss_pred             HHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 024323          124 VVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIM  203 (269)
Q Consensus       124 ~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~  203 (269)
                      .+++|.|++.-      ....-++.+..-+.-.  +++..           .........+.|.+++...+++-+.+-..
T Consensus       113 vl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~q-----------~~~~~~~~lN~GY~Wm~~NclssaafVL~  173 (309)
T COG5070         113 VLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQQ-----------ASAFKAQILNPGYLWMFTNCLSSAAFVLI  173 (309)
T ss_pred             HHHhcCccchh------hHHHHHHHHHHHHHhc--cchhh-----------HHHHHhcccCCceEEEehhhHhHHHHHHH
Confidence            99999999994      7777666655554443  22211           11112235678999999999999999988


Q ss_pred             HHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          204 QAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       204 ~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                      .|+..|-.. .....+++..+++.++++....+.|.
T Consensus       174 mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~ed  209 (309)
T COG5070         174 MRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFED  209 (309)
T ss_pred             HHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhcc
Confidence            877655322 45788999999999999999988764

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.23  E-value=0.07  Score=46.40  Aligned_cols=186  Identities=6%  Similarity=0.001  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHH
Q 024323           15 PLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLN   94 (269)
Q Consensus        15 ~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   94 (269)
                      +++.++.+.+.+|.+++-.|..-.  -|++.+-++....-.+.-+.....++.   ++.    .++..+.|.+- ..++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~--gDg~~fQw~~~~~i~~~g~~v~~~~~~---p~f----~p~amlgG~lW-~~gN~   70 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT--GDGFFFQWVMCSGIFLVGLVVNLILGF---PPF----YPWAMLGGALW-ATGNI   70 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC--CCcHHHHHHHHHHHHHHHHHHHHhcCC---Ccc----eeHHHhhhhhh-hcCce
Confidence            356788999999999999998643  577766666544433333333333221   111    23445555664 46778


Q ss_pred             HHHHHhhccCchhhhhhhhh-hHHHHHHHHHH-HhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCC---CC-
Q 024323           95 MYFASLRYTSPTFVASVVNT-VAAVTFVIAVV-LRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNP---GH-  168 (269)
Q Consensus        95 ~~~~al~~~~~~~a~~l~~~-~P~~~~i~a~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~---~~-  168 (269)
                      +-.-.++..+-+.+-++=+. .-+..-..+.+ +++++.+.- .......+|++++++|..+..+-+.+..+..   ++ 
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~  149 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET  149 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence            88889999998888877654 44555555544 454433321 1133678899999999988765443331110   00 


Q ss_pred             CCccc------cC-----CCcc-c-----cchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323          169 PPIHI------QR-----NNII-Q-----EQWLKGSFLTIASSITWSAMYIMQAITLKRY  211 (269)
Q Consensus       169 ~~~~~------~~-----~~~~-~-----~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~  211 (269)
                      +...+      ++     ++.. +     .+...|..+++++++.|+...+=...+.++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence            00000      00     0001 1     1467899999999999999776666655543

The region concerned is approximately 280 residues long.

>TIGR00803 nst UDP-galactose transporter

Probab=96.19  E-value=0.026  Score=47.92  Aligned_cols=59  Identities=14%  Similarity=0.004  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHH
Q 024323           89 VTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVT  153 (269)
Q Consensus        89 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  153 (269)
                      ......+....+++.++..-+....+.++++.+++.++++|+++..      +++|+.+.+.|+.
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            3456677889999999999999999999999999999999999995      9999999988764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.032  Score=48.63  Aligned_cols=171  Identities=15%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhc----ccCCc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhh
Q 024323           42 NPHVYVTYRHIVAGIAMFPFAYFLER----KIRPK--LTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTV  115 (269)
Q Consensus        42 ~p~~~~~~r~~~a~l~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~  115 (269)
                      .|..+++++-++...+.+.+.....+    ...++  .+.+..+.+.-+.++- .+...+-..+++|.+++.--+=-++.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence            47888888877776665555443222    11222  2222222222222221 12223334678888887776667788


Q ss_pred             HHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHH
Q 024323          116 AAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSI  195 (269)
Q Consensus       116 P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~  195 (269)
                      -+|+.++.++++|+|-+..      -..++++.+.|-.+     |...+..            .+.-...|.+++.+|.+
T Consensus       139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----GvdqE~~------------~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GVDQEGS------------TGTLSWIGVIFGVLASL  195 (347)
T ss_pred             hhHHHHhHHhhcccccccc------cceeehhheehhee-----ccccccc------------cCccchhhhHHHHHHHH
Confidence            8999999999999999995      55555555444333     2111110            11222589999999999


Q ss_pred             HHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHh
Q 024323          196 TWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIV  236 (269)
Q Consensus       196 ~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  236 (269)
                      +-|+..+..|+...... .-+.++.+..+.+.++.+|...+.
T Consensus       196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~ln  237 (347)
T KOG1442|consen  196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILN  237 (347)
T ss_pred             HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHc
Confidence            99999999987665543 456777788888888888777654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.94  E-value=0.33  Score=43.79  Aligned_cols=179  Identities=13%  Similarity=0.118  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccC----CcCCHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIR----PKLTLALFLEIFVLSLV   87 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~   87 (269)
                      -..++++..+..++=+..++-.|..-  +.+-...=.....++-+++-.+.....-+..    ...+...+....+.|++
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkvk--~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l   82 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKVK--GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL   82 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhcC--CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence            34688888899999999999999864  4666555555566666555333222222111    13455566677778887


Q ss_pred             HHHHHHHHHHHHhhccCchhhhh-hhhhhHHHHHHHHHHHhccc---cccccccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 024323           88 GVTLTLNMYFASLRYTSPTFVAS-VVNTVAAVTFVIAVVLRLET---LDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAA  163 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~-l~~~~P~~~~i~a~~~~~e~---~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~  163 (269)
                      - .++...|-.+++|.+.+...- ...++-.+..++-.++.++-   ++.  .-.+..++|++++++|+.+.. ..|..-
T Consensus        83 W-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~--~~g~~vL~Gv~v~LiGIai~g-~AG~~K  158 (344)
T PF06379_consen   83 W-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLAT--PSGQIVLLGVAVCLIGIAICG-KAGSMK  158 (344)
T ss_pred             H-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccC--CCchhhhhHHHHHHHHHHHHh-HHHHhh
Confidence            5 467788999999999886654 46688888888877665431   111  113468999999999999985 223211


Q ss_pred             CCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 024323          164 RNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIM  203 (269)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~  203 (269)
                      +       ++.+++....+.-+|.+.++++.+.-|+++.-
T Consensus       159 e-------~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g  191 (344)
T PF06379_consen  159 E-------KELGEEAKEFNFKKGLIIAVLSGVMSACFNFG  191 (344)
T ss_pred             h-------hhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            1       11112223456778999999999888887765

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.81  E-value=0.24  Score=39.49  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh-hhhhhHHHHH
Q 024323           42 NPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVAS-VVNTVAAVTF  120 (269)
Q Consensus        42 ~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~-l~~~~P~~~~  120 (269)
                      +|+...+..+.++.+.+..+.+.+.+........+.-++...-|++|. .+-..-.....+.+++.... +..-+-+...
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl  111 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFVTSSILLAPRLGAATTIALVIAGQLIMGL  111 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence            599999999999999888777664332222212222234455566654 44444445555665554444 4445555566


Q ss_pred             HHHHH-Hh---ccccccccccchhHHHHHHHHHHHHHHH
Q 024323          121 VIAVV-LR---LETLDLRNARGMAKVLGTLVSLAGVTIM  155 (269)
Q Consensus       121 i~a~~-~~---~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  155 (269)
                      ++..+ ++   +++++.      .+++|+++.++|++++
T Consensus       112 liD~fG~~g~~~~~~~~------~r~lgi~L~l~gil~~  144 (150)
T COG3238         112 LIDHFGWFGVPKRPLNL------PRILGILLVLAGILLA  144 (150)
T ss_pred             HHHhhcccCCCcCCCCH------HHHHHHHHHHHHHHHh
Confidence            66554 22   355666      5999999999995555

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=95.23  E-value=0.095  Score=45.77  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=99.6

Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHH
Q 024323           71 PKLTLALFLEIFVLSLVGVTLTLNMYFASLRY-TSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSL  149 (269)
Q Consensus        71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~  149 (269)
                      ++.+.+++...+  ..+  +..+.+-.+++++ ++...=.++-+-.++.+++.++++.|+|-+.+      |..++++.-
T Consensus        60 ~kiplk~Y~i~V--~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT  129 (330)
T KOG1583|consen   60 PKIPLKDYAITV--AMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT  129 (330)
T ss_pred             CCCchhhhheeh--hee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence            345666643322  222  2344455567766 46666667778889999999999999999997      999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHH
Q 024323          150 AGVTIMTVYKGPAARNPGHPPIHIQRNNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQ  228 (269)
Q Consensus       150 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~  228 (269)
                      +|+++.++.+.++... ..+..+.++.......+..|..+.-.|-+.-|...+.+...-|+++ ++-+.+++.-..+.+.
T Consensus       130 iGiiIcTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~  208 (330)
T KOG1583|consen  130 IGIIICTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL  208 (330)
T ss_pred             hhheeEEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch
Confidence            9999987543332211 0111111111123345577888888888888888888888888876 7778888877776655


Q ss_pred             HH
Q 024323          229 SA  230 (269)
Q Consensus       229 ~~  230 (269)
                      .+
T Consensus       209 Fl  210 (330)
T KOG1583|consen  209 FL  210 (330)
T ss_pred             HH
Confidence            43

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.0077  Score=53.41  Aligned_cols=122  Identities=12%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL   91 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   91 (269)
                      +..+.++.+.+.+.-|.++.+-|....+ ...   ...|              -+....+ .- ++  +..+.|++...+
T Consensus        19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r--------------a~~gg~~-yl-~~--~~Ww~G~ltm~v   76 (335)
T KOG2922|consen   19 NIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR--------------AGEGGYG-YL-KE--PLWWAGMLTMIV   76 (335)
T ss_pred             ceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc--------------ccCCCcc-hh-hh--HHHHHHHHHHHH
Confidence            4567788888888888888888887642 110   1111              0111111 11 22  234567777778


Q ss_pred             HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 024323           92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPA  162 (269)
Q Consensus        92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~  162 (269)
                      +...-|.+..+.|++..+-+..+.-++.++++..+++||++..      ..+|++++++|-.+++ .+.|.
T Consensus        77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV-~haP~  140 (335)
T KOG2922|consen   77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIV-IHAPK  140 (335)
T ss_pred             HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEE-EecCc
Confidence            8888999999999999999999999999999999999999996      9999999999999987 34443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.44  E-value=0.13  Score=44.00  Aligned_cols=129  Identities=20%  Similarity=0.258  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHH------HHHHHHhhcccCCcCCHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFNHGMNP------HVYVTYRHIVAGIAM------FPFAYFLERKIRPKLTLALFLEI   81 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p------~~~~~~r~~~a~l~l------~~~~~~~~~~~~~~~~~~~~~~~   81 (269)
                      -+.++++++...=|.........-. +..+      .....|.-+.-...+      +-+..+..|      ....|.-+
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira-~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R------hP~~~~~l  244 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRA-SYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR------HPYVFWDL  244 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHH-hhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh------ccHHHHHH
Confidence            4667777777778887777665433 2221      233333322111111      111111111      12234456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           82 FVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        82 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .+.++.+ .+++.+.|.-+.+-+|-.-+++..+--+|+.+.++++++.+++.|      ||+|..+.|.|...=.
T Consensus       245 ~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  245 TLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            6677775 689999999999999999999999999999999999999999997      9999999999987743

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.25  E-value=0.71  Score=40.95  Aligned_cols=138  Identities=14%  Similarity=0.170  Sum_probs=103.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcccCC-----cCCHHHHHHHHHH
Q 024323           11 LRFKPLLLMVLAQLSYTFLYFITEASFNH-GMNPHVYVTYRHIVAGIAMFPFAYFLERKIRP-----KLTLALFLEIFVL   84 (269)
Q Consensus        11 ~~~~~~l~~l~a~~~w~~~~~~~k~~~~~-~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~   84 (269)
                      +...|+.++..-.+.=|+.....+...++ .+++.++...-.+..++.-..-....+. ..+     +.+++.++-+++.
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~-~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGH-LLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHcChhHHHHHHHH
Confidence            34467788877777777777777766542 4677777777766666654433222221 111     2345555667788


Q ss_pred             HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ..++ ++++.+.|.-++.-++-.-+.++.+=-++..+++.+.++.+++..      ||+|+.+.|.|+.+=.
T Consensus       248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence            8886 589999999999999999999999999999999999999999996      9999999999998754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=93.39  E-value=0.31  Score=38.28  Aligned_cols=54  Identities=17%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhC-----C-CchhHHHHHHHHHHHHHHHHHHHhcCC
Q 024323          186 GSFLTIASSITWSAMYIMQAITLKRY-----P-AQLSLTTWMCFLGAAQSAVFTVIVARK  239 (269)
Q Consensus       186 G~~l~l~aa~~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~  239 (269)
                      |.++++.|.++.|++.++.|+..++.     . ++.....+....+.+.+.|...+.|.+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~   60 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP   60 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67899999999999999999988772     2 888999999999999999999887764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=91.98  E-value=0.26  Score=36.85  Aligned_cols=42  Identities=21%  Similarity=0.520  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 024323          195 ITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVAR  238 (269)
Q Consensus       195 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  238 (269)
                      ++||.+.+..|+..++. ++...+.+++..+.+ ..+.....++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~   42 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGR   42 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence            46899999999999987 689999999999998 6666665543

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.96  E-value=0.035  Score=47.61  Aligned_cols=134  Identities=9%  Similarity=0.147  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTL   91 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   91 (269)
                      -+|++..++.+.+.+-.+.+..+...-++.+...--+.-+.++++.+-.   .   +..++.++..|. -..-|++- ..
T Consensus       150 ~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~---~---~~~~~~~K~t~~-nii~G~~W-a~  221 (288)
T COG4975         150 LKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF---F---KMEKRFNKYTWL-NIIPGLIW-AI  221 (288)
T ss_pred             hhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh---c---ccccchHHHHHH-HHhhHHHH-Hh
Confidence            3456666666666666655555554322556555555556666654321   1   112234455433 35567664 47


Q ss_pred             HHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323           92 TLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM  155 (269)
Q Consensus        92 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  155 (269)
                      ++.+++.+-+..+.+.+-.+.-+..++..+-+.+++|||-++||+  ++.++|+++.++|+.++
T Consensus       222 GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~l  283 (288)
T COG4975         222 GNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILL  283 (288)
T ss_pred             hHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhh
Confidence            888899999988888888888888899999999999999999842  23456667777776665

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=89.61  E-value=13  Score=32.15  Aligned_cols=124  Identities=15%  Similarity=0.090  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHhhcccC------CcCCHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQLSYTFLYFITEASFNHGMNPHVYVTYRHIVAGIAM-FPFAYFLERKIR------PKLTLALFLEIFVL   84 (269)
Q Consensus        12 ~~~~~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~~~r~~~a~l~l-~~~~~~~~~~~~------~~~~~~~~~~~~~~   84 (269)
                      ...|+++.+.++++=|...+..+..++++-.++..--.++...++++ ++..........      ...+...|..++. 
T Consensus       112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~-  190 (244)
T PF04142_consen  112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL-  190 (244)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH-
Confidence            34678889999999999999998888644345555555544444433 333222221111      1122222222222 


Q ss_pred             HHHHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHH
Q 024323           85 SLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTL  146 (269)
Q Consensus        85 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~  146 (269)
                          ....-...-.-+||.+.-.=..-....-+++.+.+..+++.+++..      ..+|..
T Consensus       191 ----~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~  242 (244)
T PF04142_consen  191 ----QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA  242 (244)
T ss_pred             ----HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence                2333344556789998888888888999999999999999999994      666554

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=89.59  E-value=1  Score=33.55  Aligned_cols=116  Identities=18%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHHHHHHHH
Q 024323           16 LLLMVLAQLSYTFLYFITEASFNHGMNPHVYV--TYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLVGVTLTL   93 (269)
Q Consensus        16 ~l~~l~a~~~w~~~~~~~k~~~~~~~~p~~~~--~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   93 (269)
                      ...++...++||...++.|+... +++...-.  .+|-+           .++-+. ...+++.+. -+++--    .+.
T Consensus         5 ~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~-----------lqe~~t-l~l~w~Y~i-PFllNq----cgS   66 (125)
T KOG4831|consen    5 MDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIA-----------LQEMKT-LFLNWEYLI-PFLLNQ----CGS   66 (125)
T ss_pred             HHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHH-----------HHHHHH-HHHhHHHHH-HHHHHH----hhH
Confidence            34577889999999999999764 44322111  11110           011000 012333321 122222    345


Q ss_pred             HHHHHHhhccCchhhhhhhh-hhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH
Q 024323           94 NMYFASLRYTSPTFVASVVN-TVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM  155 (269)
Q Consensus        94 ~~~~~al~~~~~~~a~~l~~-~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll  155 (269)
                      .+||.-+++++-+.+.-+.+ +.-.|+++.+..+..|-...+      .++|..+..+|+.+.
T Consensus        67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence            67888999999888877655 666788888876555555554      888888888888765

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.06  E-value=3.5  Score=36.26  Aligned_cols=206  Identities=12%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHHHHhC-CCCh--HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCHHHHHHHHHHHHH
Q 024323           12 RFKPLLLMVLAQ-LSYTFLYFITEASFNH-GMNP--HVYVTYRHIVAGIAMFPFAYFLERKIRPKLTLALFLEIFVLSLV   87 (269)
Q Consensus        12 ~~~~~l~~l~a~-~~w~~~~~~~k~~~~~-~~~p--~~~~~~r~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   87 (269)
                      +.+..+.+..+. +.+=.+..+.++..+. +.+|  ..++..++++=..+.+.-.... +..++..++|.   +..++.+
T Consensus        40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rt---Y~~la~~  115 (367)
T KOG1582|consen   40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRT---YVILAFL  115 (367)
T ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhH---hhhhHhh
Confidence            344544444333 3355556666665431 4554  4556666554433222111111 11112234443   3334443


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024323           88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPAARNPG  167 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  167 (269)
                      . ...+.+..-++.|.+=-...++=.+--+=+++.+.++-+.|-...      ..++..+...|.++.++-+.+      
T Consensus       116 t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~------  182 (367)
T KOG1582|consen  116 T-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ------  182 (367)
T ss_pred             h-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc------
Confidence            2 234444444555554333333333333335566677777887774      899999999999998753221      


Q ss_pred             CCCccccCCCccccch-hhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 024323          168 HPPIHIQRNNIIQEQW-LKGSFLTIASSITWSAMYIMQAITLKRYP-AQLSLTTWMCFLGAAQSAVFTVIVARKPADWRI  245 (269)
Q Consensus       168 ~~~~~~~~~~~~~~~~-~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  245 (269)
                                 .++++ ..|..+.-.|-++=|.--.++.+..+..| +..+..+....+|.+.+..+.....+-.+.|..
T Consensus       183 -----------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~f  251 (367)
T KOG1582|consen  183 -----------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF  251 (367)
T ss_pred             -----------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHH
Confidence                       12222 46877777777777776667777777776 667888888899999988887766544444443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.08  E-value=8  Score=34.61  Aligned_cols=136  Identities=13%  Similarity=0.161  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccc-----CCc-CCHHHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFN-HGMNPHVYVTYRHIVAGIAMFPFAYFLERKI-----RPK-LTLALFLEIFVLSL   86 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~-~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~-----~~~-~~~~~~~~~~~~g~   86 (269)
                      .++.++....+.=+...+..|...+ .+.+-..+..+.-+.+.+.+..+.+..+...     .+. .....+-.+.+.++
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence            4567777767777777777776543 2456677778888888777766655444211     111 22334455667777


Q ss_pred             HHHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           87 VGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        87 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ++. +-.++.+.+.+..++..-+++....-..+.+...++.+++.++      ..++|+.+++.|-++-.
T Consensus       237 ~gf-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  237 MGF-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHH-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence            775 5556778899999999999888666667777777788888888      59999999999988865

>TIGR00803 nst UDP-galactose transporter

Probab=87.97  E-value=5.6  Score=33.47  Aligned_cols=95  Identities=7%  Similarity=-0.034  Sum_probs=59.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHhcCCC-----------CCCCCCCCccccC
Q 024323          107 FVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVYKGPA-----------ARNPGHPPIHIQR  175 (269)
Q Consensus       107 ~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~-----------~~~~~~~~~~~~~  175 (269)
                      .....-+..|+++++.++...+||...      .++++.++...|++....++.+.           ....++.    .+
T Consensus         6 a~~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~----~~   75 (222)
T TIGR00803         6 IHIIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS----SA   75 (222)
T ss_pred             chHHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC----Cc
Confidence            344556678888888888888998885      48999988888887533211100           0000000    00


Q ss_pred             CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 024323          176 NNIIQEQWLKGSFLTIASSITWSAMYIMQAITLKRY  211 (269)
Q Consensus       176 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~  211 (269)
                      +.....+...|....+.+..+-+...+++++..|+.
T Consensus        76 ~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~  111 (222)
T TIGR00803        76 KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG  111 (222)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence            001123556787778888888888888888876654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.66  E-value=6.8  Score=34.49  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhccc--C---CcCCHHHHHHHHHHHHH
Q 024323           14 KPLLLMVLAQLSYTFLYFITEASFN-HGMNPHVYVTYRHIVAGIAMFPFAYFLERKI--R---PKLTLALFLEIFVLSLV   87 (269)
Q Consensus        14 ~~~l~~l~a~~~w~~~~~~~k~~~~-~~~~p~~~~~~r~~~a~l~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~   87 (269)
                      .++...-.+.+.=+...-+.+.+.. ..-+..+.+++.+.++.++++......+.-.  +   .+.+.+.....++.+..
T Consensus       190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~  269 (367)
T KOG1582|consen  190 IGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLA  269 (367)
T ss_pred             eeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHH
Confidence            3455544555555555555555443 1345577888899999988877665544311  1   12344444455555555


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhhhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323           88 GVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV  157 (269)
Q Consensus        88 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  157 (269)
                      +. ++..+...-++.-++..++.+...---.|.+++++++.++++.+      ..-+.++.+.|+.+=..
T Consensus       270 gy-lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  270 GY-LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             hH-hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence            43 45555555666678888888888888999999999999999997      77777788899988653

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=86.19  E-value=7.3  Score=30.56  Aligned_cols=81  Identities=10%  Similarity=-0.049  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC-CCCe----eeecCchhhHHHH--HHH
Q 024323          187 SFLTIASSITWSAMYIMQAITLKRYPAQLSLTTWMCFLGAAQSAVFTVIVARK-PADW----RIGLNIDLWSTIY--GVS  259 (269)
Q Consensus       187 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~y--~~~  259 (269)
                      .+++++++..-++...++.++.++..+|...+...+..|.+....+....+++ .+..    .+....+.++..|  ..+
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~   82 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI   82 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence            47788899999999999999988876689999999999999988888776552 1111    1112245566665  777


Q ss_pred             Hhhhcccc
Q 024323          260 WRIRQDLY  267 (269)
Q Consensus       260 w~~~~~~~  267 (269)
                      +.++|-|.
T Consensus        83 ~~vp~lG~   90 (138)
T PF04657_consen   83 ILVPRLGA   90 (138)
T ss_pred             HHhhhhhH
Confidence            77777664

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=80.62  E-value=13  Score=31.81  Aligned_cols=109  Identities=14%  Similarity=0.162  Sum_probs=84.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhcccCC----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhhhH
Q 024323           41 MNPHVYVTYRHIVAGIAMFPFAYFLERKIRP----KLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVA  116 (269)
Q Consensus        41 ~~p~~~~~~r~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P  116 (269)
                      ..-+...++.-+++..++..+....+.+...    ..+...+.+.+..|++.. +-.++.-+.++-++++.-+++..+.-
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv-giSy~saWcvrVtSSTtySMvGALNK  261 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV-GISYCSAWCVRVTSSTTYSMVGALNK  261 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh-hhhhccceeEeehhhhHHHHHHHhhh
Confidence            3457778888899999888887776643221    233344456777788765 45567788999999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323          117 AVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus       117 ~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      .-.++.+.++++|+.+..      .+.++++++....+-.
T Consensus       262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa  295 (309)
T COG5070         262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA  295 (309)
T ss_pred             ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999995      9999999987666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 30/150 (20%)

Query: 5   SLHNVYLRFKPLLLMVLAQLSYTFL--YFITEASFNHGMNP-------HVYVTYRHIVAG 55
           S+ ++YL  K + L     L  + +  Y I +   +  + P       + ++ + H+   
Sbjct: 427 SIPSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNI 484

Query: 56  -----IAMFPFAY----FLERKIRPKLTLALFLEIFVLSLVGVTLTLNMYFASLRYTSPT 106
                + +F   +    FLE+KIR   + A      +L+ +     L  Y   +    P 
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTL---QQLKFYKPYICDNDPK 540

Query: 107 FVASVVNTVAAVTFVI---AVVLRLETLDL 133
           +   +VN +  + F+      ++  +  DL
Sbjct: 541 Y-ERLVNAI--LDFLPKIEENLICSKYTDL 567

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.54
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.48

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.54  E-value=1.8e-07  Score=72.58  Aligned_cols=69  Identities=16%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Q 024323           83 VLSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV  157 (269)
Q Consensus        83 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  157 (269)
                      ..++++..+++.++..++++.+++.+..+ .++.|++++++++++++|+++.+      +++|+++.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            56777788999999999999999999888 89999999999999999999996      99999999999999864

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.48  E-value=7.1e-07  Score=66.69  Aligned_cols=68  Identities=16%  Similarity=0.240  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCchhhhhh-hhhhHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Q 024323           83 VLSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMT  156 (269)
Q Consensus        83 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~  156 (269)
                      ..++++..+++.++..++++.|.+.+..+ ..+.|+++++++++++||+++.+      +++|+.+.++|+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            45666677899999999999999999887 79999999999999999999996      9999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00