Citrus Sinensis ID: 024331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLKDL
Secondary Structure (PSIPRED)
ccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccccEEEEEEEEcccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcHHHHccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccHHcccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEcHHHHHHHHcccccHccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
MEVVQVLHmnggvggtsyasNSLVQEKVISIAKPITEEAMTklfcstsptkvaiadlgcssgpnTLLVASELIKVVNKICDKLGSQLPEFQVFlndlpgndfnTIFRSLASFQKILRKQLgsasgaagqcfftgvpgsfygrlfprnsvhlfhssyslqwlsqvpdglesnkgnifmastsppcvlTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLgrksqdpsskecCYIWELLATALNNMVSEVTKSFLLLIVFNQlnyklkdl
Flexible Loop (DISEMBL)
MEVVQVLhmnggvggtsyasnslVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTflgrksqdpssKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLKDL
Low Complexity Region (SEG)
MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLKDL
Disordered region (IsUnstruct)
*****VLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR*******KECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYK****
Disordered Region (DISOPRED)
*E*VQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK**
Disordered Region (DISEMBL)
MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG********KECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLKDL
Disordered Region (DISPRO)
*EVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLKDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q9SPV4	359	Salicylate O-methyltransf	N/A	no	0.881	0.660	0.616	5e-86
Q9SBK6	392	Jasmonate O-methyltransfe	N/A	no	0.921	0.632	0.501	9e-64
Q9FZN8	369	Caffeine synthase 1 OS=Ca	N/A	no	0.892	0.650	0.472	9e-60
Q9AR07	389	Jasmonate O-methyltransfe	no	no	0.918	0.634	0.507	2e-59
Q68CM3	365	Probable caffeine synthas	N/A	no	0.892	0.657	0.470	4e-59
Q9FYZ9	364	Benzoate carboxyl methylt	N/A	no	0.855	0.631	0.481	7e-57
Q9AVK1	385	Probable caffeine synthas	N/A	no	0.888	0.620	0.432	1e-53
Q9AVL9	385	Probable caffeine synthas	N/A	no	0.888	0.620	0.432	2e-53
Q8H0D2	384	3,7-dimethylxanthine N-me	N/A	no	0.884	0.619	0.429	3e-53
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.895	0.647	0.416	2e-50

>sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1

 Score =  317 bits (812), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 154/250 (61%), Positives = 184/250 (73%), Gaps = 13/250 (5%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFC-STSPTKVAIADLGC 59
           M+V QVLHM GG G  SYA NS +Q +VISI KPITE A+T L+   T  T++AIADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQ-LPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
           SSGPN L   +ELIK V ++  K+G +  PE+Q+FLNDLPGNDFN IFRSL     +   
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--- 117

Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA 178
                    G CF  GVPGSFYGRLFPRN++H  HSSYSL WLSQVP G+ESNKGNI+MA
Sbjct: 118 --------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA 169

Query: 179 STSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL 238
           +T P  VL AYY+QFQ D +LFL+CR++E+V  GRMVLT LGR+S+D +S ECC IW+LL
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL 229

Query: 239 ATALNNMVSE 248
           A ALN MVSE
Sbjct: 230 AMALNQMVSE 239

Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants.
Clarkia breweri (taxid: 36903)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 9

>sp|Q9SBK6|JMT_BRARP Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1

 Score =  243 bits (620), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 171/267 (64%), Gaps = 19/267 (7%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPT-KVAIADLGC 59
           MEV+++LHMN G G TSYA NS+VQ  +IS+ + + +EA+ KL    S      IADLGC
Sbjct: 1   MEVMRILHMNKGNGETSYAKNSIVQSNIISLGRRVMDEALKKLMIRNSEILSFGIADLGC 60

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ 119
           SSGPN+LL  S +++ +  +C  L   +PE  + LNDLP NDFN IF SL  F   ++K+
Sbjct: 61  SSGPNSLLSISNIVETIQNLCHDLDRPVPELSLSLNDLPSNDFNYIFASLPEFYDRVKKR 120

Query: 120 ------LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP-------D 166
                 LG   G+ G CF + VPGSFYGRLFPR S+H  HSS SL WLSQVP       D
Sbjct: 121 DNNYESLGFEHGSGGPCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCGEVNKKD 180

Query: 167 GLE-----SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 221
           G+       N+G I+++ TSP      Y  QFQ DFS+FL+ RSEELV  GRMVL+FLGR
Sbjct: 181 GVVITADLDNRGKIYLSKTSPKSAHKVYALQFQTDFSVFLRSRSEELVPGGRMVLSFLGR 240

Query: 222 KSQDPSSKECCYIWELLATALNNMVSE 248
            S DP+++E CY WELLA AL ++  E
Sbjct: 241 SSPDPTTEESCYQWELLAQALMSLAKE 267

Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses.

Brassica rapa subsp. pekinensis (taxid: 51351)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1

 Score =  230 bits (586), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 120/254 (47%), Positives = 162/254 (63%), Gaps = 14/254 (5%)

Query: 2   EVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK-VAIADLGCS 60
           +V +VL MN G G +SYA NS   ++V S+A+P  E A+  LF      + +  ADLGC+
Sbjct: 8   KVNEVLFMNRGEGESSYAQNSSFTQQVASMAQPALENAVETLFSRDFHLQALNAADLGCA 67

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           +GPNT  V S + +++ K C +L  Q  E QV+LNDL GNDFNT+F+ L+S      + +
Sbjct: 68  AGPNTFAVISTIKRMMEKKCRELNCQTLELQVYLNDLFGNDFNTLFKGLSS------EVI 121

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKGN 174
           G+       C+  GVPGSF+GRLFPRNS+HL HSSYS+ WL+Q P GL S      NKG 
Sbjct: 122 GNKCEEV-PCYVMGVPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLALNKGK 180

Query: 175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYI 234
           I+++ TSPP V  AY  QF  DF++FL  RS+E+V  G MVL   GR+  DPS  + C+ 
Sbjct: 181 IYISKTSPPVVREAYLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQCSDPSDMQSCFT 240

Query: 235 WELLATALNNMVSE 248
           WELLA A+  +VS+
Sbjct: 241 WELLAMAIAELVSQ 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AR07|JMT_ARATH Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=3

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 168/264 (63%), Gaps = 17/264 (6%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSP-TKVAIADLGC 59
           MEV++VLHMN G G TSYA NS  Q  +IS+ + + +EA+ KL  S S  + + IADLGC
Sbjct: 1   MEVMRVLHMNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGC 60

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL--- 116
           SSGPN+LL  S ++  ++ +C  L   +PE +V LNDLP NDFN I  SL  F   +   
Sbjct: 61  SSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNN 120

Query: 117 RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP----------- 165
           ++ LG   G    CF + VPGSFYGRLFPR S+H  HSS SL WLSQVP           
Sbjct: 121 KEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTI 180

Query: 166 -DGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ 224
              LE N G I+++ TSP     AY  QFQ DF +FL+ RSEELV  GRMVL+FLGR+S 
Sbjct: 181 TADLE-NMGKIYISKTSPKSAHKAYALQFQTDFWVFLRSRSEELVPGGRMVLSFLGRRSL 239

Query: 225 DPSSKECCYIWELLATALNNMVSE 248
           DP+++E CY WELLA AL +M  E
Sbjct: 240 DPTTEESCYQWELLAQALMSMAKE 263

Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1

 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 120/255 (47%), Positives = 156/255 (61%), Gaps = 15/255 (5%)

Query: 2   EVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAI--ADLGC 59
           EV + L MN G G +SYA NS   + V S+  P+ E A+  LF        A+   DLGC
Sbjct: 3   EVKEALFMNKGEGESSYAQNSSFTQTVTSMTMPVLENAVETLFSKDFHLLQALNAVDLGC 62

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ 119
           ++GP T  V S + +++ K C +L  Q  E QV+LNDLPGNDFNT+F+ L S  K++  +
Sbjct: 63  AAGPTTFTVISTIKRMMEKKCRELNCQTLELQVYLNDLPGNDFNTLFKGLPS--KVVGNK 120

Query: 120 LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKG 173
               S     C+  GVPGSF+GRLFPRNS+HL HS YS+ WL+Q P GL S      NKG
Sbjct: 121 CEEVS-----CYVVGVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKEGLALNKG 175

Query: 174 NIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCY 233
            I+++ TSPP V  AY  QF  DF++FL  RS+E+V  G MVL   GR S DPS    C+
Sbjct: 176 KIYISKTSPPVVREAYLSQFHEDFTMFLNSRSQEVVPNGCMVLILRGRLSSDPSDMGSCF 235

Query: 234 IWELLATALNNMVSE 248
            WELLA A+  +VS+
Sbjct: 236 TWELLAVAIAELVSQ 250

May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1

 Score =  220 bits (561), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/249 (48%), Positives = 162/249 (65%), Gaps = 19/249 (7%)

Query: 5   QVLHMN-GGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS--PTKVAIADLGCSS 61
           ++L MN  G G TSYA+NS +Q+ ++S +  + +E +  +       P    + D+GCSS
Sbjct: 6   KLLCMNIAGDGETSYANNSGLQKVMMSKSLHVLDETLKDIIGDHVGFPKCFKMMDMGCSS 65

Query: 62  GPNTLLVASELIKVVNKI-CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           GPN LLV S +I  +  +  +K  ++LPEF+VFLNDLP NDFN +F+ L           
Sbjct: 66  GPNALLVMSGIINTIEDLYTEKNINELPEFEVFLNDLPDNDFNNLFKLL----------- 114

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLE-SNKGNIFMAS 179
              S   G CF  G+PGSFYGRL P+ S+H  +SSYS+ WLSQVP+GLE +N+ NI+MA+
Sbjct: 115 ---SHENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDNNRQNIYMAT 171

Query: 180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLA 239
            SPP V  AY +Q++RDFS FLK R EE+V  GRMVLTF GR  +DPSSK+   I+ LLA
Sbjct: 172 ESPPEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSKDDLAIFTLLA 231

Query: 240 TALNNMVSE 248
             L +MV+E
Sbjct: 232 KTLVDMVAE 240

Converts benzoic acid into the volatile ester methyl benzoates. This scent, mostly produced in a rhythmical, diurnal manner, attracts the pollinators.

Antirrhinum majus (taxid: 4151)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 165/261 (63%), Gaps = 22/261 (8%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
           ME+ +VLHMNGG G  SYA NS   + V++  KP+ E+ + +L  +  P     + +ADL
Sbjct: 1   MELQEVLHMNGGEGDASYAKNSSFNQLVLAKVKPVLEQCVGELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNTLL   ++++ ++K+  ++ ++L  P  QVFL DL  NDFN++F  L SF + 
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVRQEMKNELERPTIQVFLTDLFQNDFNSVFMLLPSFYRK 120

Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL------E 169
           L K+ G   G+   C    +PGSF+GRLFP  S+H  HSSYSLQ+LSQVP GL       
Sbjct: 121 LEKENGRKIGS---CLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTELGIT 177

Query: 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL--GRKSQDPS 227
           +NK +I+ +  SPP V  AY +QF +DF+ FL+ RSEEL++ GRM+LT +  G +   P+
Sbjct: 178 ANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRIRSEELLSRGRMLLTCICKGDEFDGPN 237

Query: 228 SKECCYIWELLATALNNMVSE 248
           +       +LL  A+N++V E
Sbjct: 238 T------MDLLEMAINDLVVE 252

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 165/261 (63%), Gaps = 22/261 (8%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
           ME+ +VLHMNGG G  SYA NS   + V++  KP+ E+ + +L  +  P     + +ADL
Sbjct: 1   MELQEVLHMNGGEGEASYAKNSSFNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNTLL   + ++ ++K+  ++ ++L  P  QVFL DL  NDFN++F  L SF + 
Sbjct: 61  GCASGPNTLLTVWDTVQSIDKVKQEMKNELERPTIQVFLTDLFQNDFNSVFMLLPSFYRK 120

Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL------E 169
           L K+ G   G+   C    +PGSF+GRLFP  S+H  HSSYSLQ+LSQVP GL       
Sbjct: 121 LEKENGRKIGS---CLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTELGIT 177

Query: 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL--GRKSQDPS 227
           +NK +I+ +  SPP V  AY +QF +DF+ FL+ RSEEL++ GRM+LT +  G +   P+
Sbjct: 178 ANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRMRSEELLSRGRMLLTCICKGDECDGPN 237

Query: 228 SKECCYIWELLATALNNMVSE 248
           +       +LL  A+N++V+E
Sbjct: 238 T------MDLLEMAINDLVAE 252

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1

 Score =  208 bits (530), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/261 (42%), Positives = 165/261 (63%), Gaps = 23/261 (8%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
           ME+ +VLHMNGG G TSYA NS     +I + KPI E+ + +L  +  P     + +ADL
Sbjct: 1   MELQEVLHMNGGEGDTSYAKNSFYNLFLIRV-KPILEQCIQELLRANLPNINKCIKVADL 59

Query: 58  GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNTLL   ++++ ++K+  +  ++L  P  Q+FLNDL  NDFN++F+SL SF + 
Sbjct: 60  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKSLPSFYRK 119

Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL------E 169
           L K+ G   G+   C    +PGSFYGRLFP  S+H  HS Y L WLSQVP GL       
Sbjct: 120 LEKENGCKIGS---CLIGAMPGSFYGRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGIS 176

Query: 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS--QDPS 227
           +NKG I+ +  S P +  AY +QF +DF+ FL+  SEEL++ GRM+LT++ ++   ++P+
Sbjct: 177 ANKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTWICKEDEFENPN 236

Query: 228 SKECCYIWELLATALNNMVSE 248
           S       +LL  ++N++V E
Sbjct: 237 S------IDLLEMSINDLVIE 251

Involved in the biosynthesis of caffeine. Catalyzes the conversion of paraxanthine to caffeine. Can also convert 7-methylxanthine to theobromine and theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 158/259 (61%), Gaps = 18/259 (6%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
           ME+ +VL MNGG G TSYA NS   + V++  KP+ E+ + +L  +  P     + +ADL
Sbjct: 1   MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNTLL   ++++ ++K+  +  ++L  P  Q+FLNDL  NDFN++F+ L SF + 
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120

Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL------E 169
           L K+ G   G+   C    +PGSFY RLFP  S+H  HS Y LQWLSQVP GL       
Sbjct: 121 LEKENGRKIGS---CLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIS 177

Query: 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
           +NKG+I+ +  S   V  AY +QF +DF+ FL+  SEEL + GRM+LT + +  +  +  
Sbjct: 178 TNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARN 237

Query: 230 ECCYIWELLATALNNMVSE 248
                 +LL  A+N++V E
Sbjct: 238 AI----DLLEMAINDLVVE 252

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255561056	366	Benzoate carboxyl methyltransferase, put	0.910	0.669	0.709	1e-102
255561060	366	Benzoate carboxyl methyltransferase, put	0.910	0.669	0.713	1e-102
225430676	364	PREDICTED: salicylate O-methyltransferas	0.910	0.673	0.705	1e-100
440550959	367	salicylic acid carboxyl methyltransferas	0.910	0.667	0.722	1e-100
224097038	364	predicted protein [Populus trichocarpa]	0.910	0.673	0.721	1e-100
297735107	327	unnamed protein product [Vitis vinifera]	0.910	0.749	0.701	2e-98
359476667	364	PREDICTED: salicylate O-methyltransferas	0.910	0.673	0.701	2e-98
359476672	363	PREDICTED: salicylate O-methyltransferas	0.907	0.672	0.701	1e-97
297735106	306	unnamed protein product [Vitis vinifera]	0.881	0.774	0.7	9e-97
351726307	370	salicylic acid methyl transferase-like p	0.903	0.656	0.678	1e-96

>gi|255561056|ref|XP_002521540.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223539218|gb|EEF40811.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 203/248 (81%), Gaps = 3/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEV QVLHMNGG+G TSYA NSLVQ+KVIS+ KPITEEAMT L+CS SP  ++IAD+GCS
Sbjct: 1   MEVGQVLHMNGGMGDTSYAQNSLVQQKVISMTKPITEEAMTNLYCSISPKSLSIADMGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPN+L   SELI+ V  IC KLG Q PE+QVFLNDLPGNDFNTIFRSL  F++ + KQ+
Sbjct: 61  SGPNSLFAVSELIRAVETICGKLGHQSPEYQVFLNDLPGNDFNTIFRSLTGFKEQVEKQV 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
                + G CFF+GVPGSFYGRLFP  ++H  HSSYSLQWLSQVPDG+E N GNI+MAS 
Sbjct: 121 ---EVSVGPCFFSGVPGSFYGRLFPSKALHFVHSSYSLQWLSQVPDGIEGNDGNIYMASD 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPP VL AYY QFQ+DFS+FLKCRSEELV  GRMVLTFLGR+S+DP+SKECCYIW+LLA 
Sbjct: 178 SPPSVLQAYYRQFQKDFSMFLKCRSEELVPGGRMVLTFLGRRSEDPASKECCYIWKLLAM 237

Query: 241 ALNNMVSE 248
            L  +V E
Sbjct: 238 VLGELVLE 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561060|ref|XP_002521542.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223539220|gb|EEF40813.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/248 (71%), Positives = 203/248 (81%), Gaps = 3/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEV QVLHMNGG G TSYA NSL+Q+KVIS+ KPITEEAMT L+CS SP  + IADLGCS
Sbjct: 1   MEVGQVLHMNGGTGETSYAQNSLLQQKVISMTKPITEEAMTNLYCSISPKSLLIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNTL   SELI+VV  +C KLG Q PE+QVFLNDLPGNDFNTIFRSL  F++ + ++ 
Sbjct: 61  SGPNTLFAVSELIRVVETVCGKLGHQSPEYQVFLNDLPGNDFNTIFRSLTGFKEKMEER- 119

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
                + G CFFTGVPGSFYGRLFP  ++H  +SSY L WLSQVP+GLE NKGNI+MAS 
Sbjct: 120 --TKVSVGPCFFTGVPGSFYGRLFPSKTLHFVYSSYCLHWLSQVPEGLEDNKGNIYMASA 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPP VL AYY QFQ+DFS+FLKCRS+ELVA GRMVLTFLGR+S+DP+SKECCYIWELLA 
Sbjct: 178 SPPSVLKAYYRQFQKDFSMFLKCRSQELVAGGRMVLTFLGRRSEDPTSKECCYIWELLAM 237

Query: 241 ALNNMVSE 248
           ALN +V E
Sbjct: 238 ALNELVLE 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430676|ref|XP_002262676.1| PREDICTED: salicylate O-methyltransferase [Vitis vinifera]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/248 (70%), Positives = 202/248 (81%), Gaps = 3/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEVVQVL M GG G TSYA NSLVQ+KVIS+ KPI EEA+T L+C+  PT + IADLGCS
Sbjct: 1   MEVVQVLCMKGGNGDTSYAKNSLVQKKVISLTKPIIEEAITNLYCNKFPTSLCIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNTL    E++  V+++  K+G QLPE QVFLNDLPGNDFNTIF+SL  FQK L K++
Sbjct: 61  SGPNTLFAVLEVVTTVDRVGKKMGRQLPEIQVFLNDLPGNDFNTIFKSLPRFQKDLEKRM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
           G+    A  CF  GVPGSFYGRLFP  S+H  HSSYSLQWLSQVP GLESNKGNI+MAS+
Sbjct: 121 GAG---AESCFINGVPGSFYGRLFPSKSLHFIHSSYSLQWLSQVPQGLESNKGNIYMASS 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPPCVL  YYEQF+ DFS+FL+CRSEEL+  G MVLTFLGR+S+DPSSKECCYIWELLA 
Sbjct: 178 SPPCVLKVYYEQFRTDFSMFLRCRSEELLEGGSMVLTFLGRRSEDPSSKECCYIWELLAV 237

Query: 241 ALNNMVSE 248
           ALN+MV+E
Sbjct: 238 ALNDMVAE 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440550959|gb|AGC11863.1| salicylic acid carboxyl methyltransferase [Camellia japonica]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/249 (72%), Positives = 202/249 (81%), Gaps = 4/249 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEV+QVLHMNGG+G TSYASNSLVQ+KVIS+ KPIT+EA+  L+CST+P  + IADLGCS
Sbjct: 1   MEVIQVLHMNGGIGETSYASNSLVQKKVISLTKPITKEAIVDLYCSTNPMTLCIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNT LV SEL++ V+  C KLG Q PEFQV+LNDLPGNDFNTIF+ L SF + +R Q+
Sbjct: 61  SGPNTFLVVSELMETVHNTCQKLGHQTPEFQVYLNDLPGNDFNTIFKCLPSFHEKMRNQM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMAS 179
           G      G CF TGVPGSFY RLFP  S+H  HSSYSL WLSQVPDGLES NKGNI+MAS
Sbjct: 121 GL---GLGPCFVTGVPGSFYARLFPTKSLHFVHSSYSLMWLSQVPDGLESNNKGNIYMAS 177

Query: 180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLA 239
           +S   VL AYY QFQ DFS FLKCRSEELV+ GRMVLT LGR+S DPSSKECCYIWELLA
Sbjct: 178 SSSKEVLKAYYHQFQIDFSEFLKCRSEELVSGGRMVLTILGRESDDPSSKECCYIWELLA 237

Query: 240 TALNNMVSE 248
            ALN MVSE
Sbjct: 238 MALNQMVSE 246

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097038|ref|XP_002310820.1| predicted protein [Populus trichocarpa] gi|118486393|gb|ABK95036.1| unknown [Populus trichocarpa] gi|222853723|gb|EEE91270.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/248 (72%), Positives = 200/248 (80%), Gaps = 3/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEV QVLHMNGG G TSYA NSLVQ KVISI   I EEA+T ++C+T PT +AIADLGCS
Sbjct: 1   MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNTL   SEL+KVV+++  KLG Q PE+QV LNDLPGNDFN IF+SLA FQ+ L+KQ+
Sbjct: 61  SGPNTLYAVSELVKVVDEVRRKLGHQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKKQM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
           G   G    CFF GVPGSFY RLF   S+H  HSSYSL WLS+VP+GLE NKGNI+MAST
Sbjct: 121 GDGFGP---CFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLEGNKGNIYMAST 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPP VL AYY QFQ DF+LFLKCRSEELVA GRMVLT LGR+S+DPSSKECCYIWELLA 
Sbjct: 178 SPPSVLKAYYMQFQTDFTLFLKCRSEELVAGGRMVLTILGRRSEDPSSKECCYIWELLAV 237

Query: 241 ALNNMVSE 248
           ALN MV E
Sbjct: 238 ALNEMVLE 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735107|emb|CBI17469.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 202/248 (81%), Gaps = 3/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEVVQVL M GG G TSYA NSL+Q+KVIS+ KPIT+EA++ LFC+  P ++ IADLGCS
Sbjct: 1   MEVVQVLCMKGGNGDTSYAQNSLLQKKVISLTKPITDEAISNLFCNNFPARLCIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNTL    E +  V+K+  K+G +LPE QVFLNDLPGNDFNTIF+SL +FQK L+K +
Sbjct: 61  SGPNTLFAVLEFVTTVDKVHKKMGHELPEIQVFLNDLPGNDFNTIFKSLPTFQKDLQKTM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
           G+    A  CF TGVPGSFYGRLF   S+H  HSSYSLQWLSQVP GLESNKGNI+MAS+
Sbjct: 121 GAG---AESCFVTGVPGSFYGRLFLGKSLHFVHSSYSLQWLSQVPRGLESNKGNIYMASS 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPP VL AYYEQFQ DFS+FL+CRSEEL+  G MVLTFLGR S+DPSSKECCYIWELLA 
Sbjct: 178 SPPSVLKAYYEQFQTDFSMFLRCRSEELLEGGSMVLTFLGRISEDPSSKECCYIWELLAV 237

Query: 241 ALNNMVSE 248
           ALN+MV+E
Sbjct: 238 ALNDMVAE 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476667|ref|XP_002262759.2| PREDICTED: salicylate O-methyltransferase [Vitis vinifera]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 202/248 (81%), Gaps = 3/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEVVQVL M GG G TSYA NSL+Q+KVIS+ KPIT+EA++ LFC+  P ++ IADLGCS
Sbjct: 1   MEVVQVLCMKGGNGDTSYAQNSLLQKKVISLTKPITDEAISNLFCNNFPARLCIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNTL    E +  V+K+  K+G +LPE QVFLNDLPGNDFNTIF+SL +FQK L+K +
Sbjct: 61  SGPNTLFAVLEFVTTVDKVHKKMGHELPEIQVFLNDLPGNDFNTIFKSLPTFQKDLQKTM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
           G+    A  CF TGVPGSFYGRLF   S+H  HSSYSLQWLSQVP GLESNKGNI+MAS+
Sbjct: 121 GAG---AESCFVTGVPGSFYGRLFLGKSLHFVHSSYSLQWLSQVPRGLESNKGNIYMASS 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPP VL AYYEQFQ DFS+FL+CRSEEL+  G MVLTFLGR S+DPSSKECCYIWELLA 
Sbjct: 178 SPPSVLKAYYEQFQTDFSMFLRCRSEELLEGGSMVLTFLGRISEDPSSKECCYIWELLAV 237

Query: 241 ALNNMVSE 248
           ALN+MV+E
Sbjct: 238 ALNDMVAE 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476672|ref|XP_002263123.2| PREDICTED: salicylate O-methyltransferase-like [Vitis vinifera]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 199/248 (80%), Gaps = 4/248 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEV QVL M GG G TSYA NSLVQ+KVIS+ KPI E+A+T L+C+  P  + IADLGCS
Sbjct: 1   MEVAQVLCMKGGNGDTSYAKNSLVQKKVISLTKPIIEDAITNLYCNNFPASLCIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNT     E++  V+K+  K+G QLPE QVFLNDLPGNDFNTIF+SL  FQK L+K +
Sbjct: 61  SGPNTFFAVLEVVTTVDKVGKKMGRQLPEIQVFLNDLPGNDFNTIFKSLPKFQKDLQKTM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
           G+    A  CF TGVPGSFYGRLFP  S+H  HSSYSLQWLSQVP GLE NKGNI+MAS+
Sbjct: 121 GA---GAESCFVTGVPGSFYGRLFPSKSLHFVHSSYSLQWLSQVPRGLE-NKGNIYMASS 176

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SPP VL AYYEQFQ DFS+FL+CRSEEL+  G MVLTFLGR+S+DPSSKECCYIWELLA 
Sbjct: 177 SPPSVLKAYYEQFQSDFSMFLRCRSEELLGGGTMVLTFLGRRSEDPSSKECCYIWELLAV 236

Query: 241 ALNNMVSE 248
           ALN+MVSE
Sbjct: 237 ALNDMVSE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735106|emb|CBI17468.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (920), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 168/240 (70%), Positives = 195/240 (81%), Gaps = 3/240 (1%)

Query: 9   MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLV 68
           M GG G TSYA NSLVQ+KVIS+ KPI EEA+T L+C+  PT + IADLGCSSGPNTL  
Sbjct: 1   MKGGNGDTSYAKNSLVQKKVISLTKPIIEEAITNLYCNKFPTSLCIADLGCSSGPNTLFA 60

Query: 69  ASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128
             E++  V+++  K+G QLPE QVFLNDLPGNDFNTIF+SL  FQK L K++G+    A 
Sbjct: 61  VLEVVTTVDRVGKKMGRQLPEIQVFLNDLPGNDFNTIFKSLPRFQKDLEKRMGAG---AE 117

Query: 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA 188
            CF  GVPGSFYGRLFP  S+H  HSSYSLQWLSQVP GLESNKGNI+MAS+SPPCVL  
Sbjct: 118 SCFINGVPGSFYGRLFPSKSLHFIHSSYSLQWLSQVPQGLESNKGNIYMASSSPPCVLKV 177

Query: 189 YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSE 248
           YYEQF+ DFS+FL+CRSEEL+  G MVLTFLGR+S+DPSSKECCYIWELLA ALN+MV+E
Sbjct: 178 YYEQFRTDFSMFLRCRSEELLEGGSMVLTFLGRRSEDPSSKECCYIWELLAVALNDMVAE 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726307|ref|NP_001237122.1| salicylic acid methyl transferase-like protein [Glycine max] gi|194136583|gb|ACF33514.1| salicylic acid methyl transferase-like protein [Glycine max]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/246 (67%), Positives = 202/246 (82%), Gaps = 3/246 (1%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCS 60
           MEV QVLHMNGGVG  SYA+NSLVQ+KVI + KPI EEA+  L+CST P  +AIADLGCS
Sbjct: 1   MEVAQVLHMNGGVGDASYANNSLVQQKVICLTKPIREEAIRSLYCSTHPRSLAIADLGCS 60

Query: 61  SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL 120
           SGPNTL V SE IK+V K+C +L  + PE++VFLNDLPGNDFN IF+SL S ++ L  ++
Sbjct: 61  SGPNTLFVVSEFIKIVEKLCRELNHKSPEYKVFLNDLPGNDFNNIFKSLDSVKEKLCDEM 120

Query: 121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180
            S     G C+F+GVPGSFYGR+FP  S+H  HSSYSLQWLS+VP+G+++NKGN+++ ST
Sbjct: 121 ESG---IGPCYFSGVPGSFYGRVFPYQSLHFVHSSYSLQWLSKVPEGVDNNKGNVYIGST 177

Query: 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLAT 240
           SP  V+ AYYEQFQRDFSLFLKCR+EELV  GRMVLTFLGR+S DPSSK+ CYIWELLAT
Sbjct: 178 SPKNVVRAYYEQFQRDFSLFLKCRAEELVEGGRMVLTFLGRRSDDPSSKDGCYIWELLAT 237

Query: 241 ALNNMV 246
           AL++MV
Sbjct: 238 ALSDMV 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.918	0.634	0.511	9e-61
TAIR|locus:2080747	379	BSMT1 [Arabidopsis thaliana (t	0.936	0.664	0.477	3.1e-60
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.881	0.644	0.491	1.5e-58
TAIR|locus:2154845	354	AT5G66430 [Arabidopsis thalian	0.858	0.652	0.473	2.5e-58
TAIR|locus:2179929	415	NAMT1 [Arabidopsis thaliana (t	0.884	0.573	0.481	2.8e-57
TAIR|locus:2179969	385	AT5G04380 "AT5G04380" [Arabido	0.869	0.607	0.476	8.6e-56
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.881	0.644	0.459	4.8e-55
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.888	0.644	0.461	1.7e-52
TAIR|locus:2053458	359	AT2G14060 [Arabidopsis thalian	0.869	0.651	0.448	1.1e-50
TAIR|locus:2161680	386	IAMT1 "AT5G55250" [Arabidopsis	0.843	0.588	0.390	4.9e-37

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 135/264 (51%), Positives = 169/264 (64%)

Query:     1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSP-TKVAIADLGC 59
             MEV++VLHMN G G TSYA NS  Q  +IS+ + + +EA+ KL  S S  + + IADLGC
Sbjct:     1 MEVMRVLHMNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGC 60

Query:    60 SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL--- 116
             SSGPN+LL  S ++  ++ +C  L   +PE +V LNDLP NDFN I  SL  F   +   
Sbjct:    61 SSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNN 120

Query:   117 RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP-------D--- 166
             ++ LG   G    CF + VPGSFYGRLFPR S+H  HSS SL WLSQVP       D   
Sbjct:   121 KEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTI 180

Query:   167 --GLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ 224
                LE N G I+++ TSP     AY  QFQ DF +FL+ RSEELV  GRMVL+FLGR+S 
Sbjct:   181 TADLE-NMGKIYISKTSPKSAHKAYALQFQTDFWVFLRSRSEELVPGGRMVLSFLGRRSL 239

Query:   225 DPSSKECCYIWELLATALNNMVSE 248
             DP+++E CY WELLA AL +M  E
Sbjct:   240 DPTTEESCYQWELLAQALMSMAKE 263

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 127/266 (47%), Positives = 172/266 (64%)

Query:     4 VQVLHMNGGVGGTSYASNSLVQEKVISIAKPI----TEEAMTKLFCSTSPTKVAIADLGC 59
             V+ L M+GG G  SY++NS +Q+KV+S+AKP+    TEE M  L     PT + +A+LGC
Sbjct:    26 VKALCMSGGDGANSYSANSRLQKKVLSMAKPVLVRNTEEMMMNL---DFPTYIKVAELGC 82

Query:    60 SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ 119
             SSG N+ L   E+I  +N +C  +    PE    LNDLP NDFNT F+ +  F K L   
Sbjct:    83 SSGQNSFLAIFEIINTINVLCQHVNKNSPEIDCCLNDLPENDFNTTFKFVPFFNKEL--M 140

Query:   120 LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAS 179
             + + S     CF  G PGSFY RLF RNS+HL HSSY+L WLS+VP+ LE+NKGN+++ S
Sbjct:   141 ITNKSS----CFVYGAPGSFYSRLFSRNSLHLIHSSYALHWLSKVPEKLENNKGNLYITS 196

Query:   180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS-QDPSSKECCYIWELL 238
             +SP     AY  QFQ+DF++FL+ RSEE+V+ GRMVLTF+GR +  DP  ++CC+ W LL
Sbjct:   197 SSPQSAYKAYLNQFQKDFTMFLRLRSEEIVSNGRMVLTFIGRNTLNDPLYRDCCHFWTLL 256

Query:   239 ATALNNMVSEVTKSFLLLIVFNQLNY 264
             + +L ++V E   S   L  FN   Y
Sbjct:   257 SNSLRDLVFEGLVSESKLDAFNMPFY 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006952 "defense response" evidence=IEP

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0051707 "response to other organism" evidence=IEP

GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA

GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 120/244 (49%), Positives = 159/244 (65%)

Query:     6 VLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS-PTKVAIADLGCSSGPN 64
             VL M GG G  SYA+NS  Q+++ S AKP+  E + ++   T  P  + +ADLGCSSG N
Sbjct:     3 VLSMKGGDGEHSYANNSEGQKRLASDAKPVVVETVKEMIVKTDFPGCIKVADLGCSSGEN 62

Query:    65 TLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSAS 124
             TLLV SE++  +     + G  LPE    LNDLP NDFNT F+ + +F K+L+  +    
Sbjct:    63 TLLVMSEIVNTIITSYQQKGKNLPEINCCLNDLPDNDFNTTFKLVPAFHKLLKMDV---- 118

Query:   125 GAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPC 184
                G+CF +GVPGSFY RLFP  S+H  HSS  L WLS+VPDGLE NK N+++ S  PP 
Sbjct:   119 --KGKCFISGVPGSFYSRLFPSKSLHFVHSSLCLHWLSKVPDGLEDNKKNVYLRSPCPPN 176

Query:   185 VLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNN 244
             V  +Y  QF+ DFSLFL+ R++E V  GRM LTF+GRKS DP SK+C   W  ++ +L +
Sbjct:   177 VYKSYLTQFKNDFSLFLRLRADETVPNGRMALTFVGRKSLDPLSKDCFQNWSSISDSLLD 236

Query:   245 MVSE 248
             +VSE
Sbjct:   237 LVSE 240

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 115/243 (47%), Positives = 163/243 (67%)

Query:     9 MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS-PTKVAIADLGCSSGPNTLL 67
             M+GG G  SY++NSL+Q+KV+S AKP+  +    +  + + P  + +ADLGC++G NT L
Sbjct:     1 MSGGDGDNSYSTNSLLQKKVLSKAKPVLVKNTKGMMINLNFPNYIKVADLGCATGENTFL 60

Query:    68 VASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR-KQLGSASGA 126
               +E++  +N +C +   + PE    LNDLP NDFNT F+ +  F K ++ K+L      
Sbjct:    61 TMAEIVNTINVLCQQCNQKPPEIDCCLNDLPDNDFNTTFKFVPFFNKRVKSKRL------ 114

Query:   127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL 186
                CF +GVPGSFY RLFPR S+H  HSSYSL WLS+VP GLE N  ++++ ++SPP   
Sbjct:   115 ---CFVSGVPGSFYSRLFPRKSLHFVHSSYSLHWLSKVPKGLEKNSSSVYITTSSPPNAY 171

Query:   187 TAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS-QDPSSKECCYIWELLATALNNM 245
              AY  QFQ DF  FL+ RSEE+V+ GRMVLTF+GRK+  DP  ++CC+ W LL+T+L ++
Sbjct:   172 KAYLNQFQSDFKSFLEMRSEEMVSNGRMVLTFIGRKTLDDPLHRDCCHFWTLLSTSLRDL 231

Query:   246 VSE 248
             V E
Sbjct:   232 VYE 234

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 119/247 (48%), Positives = 157/247 (63%)

Query:     4 VQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS-PTKVAIADLGCSSG 62
             V  L M GG G  SY+SNSL+Q +V+S AKP+  +    L  + + PT + +ADLGCSSG
Sbjct:    55 VSPLCMRGGDGYNSYSSNSLLQRRVLSKAKPVLVKNTKDLMINLNFPTYIKVADLGCSSG 114

Query:    63 PNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS 122
              NT L  SE+I  +N  C +     PE    LNDLP NDFNT F+ +  F        G 
Sbjct:   115 QNTFLAMSEIINTINVFCQQRNQNPPEIDCCLNDLPSNDFNTTFKFIQFFN-------GM 167

Query:   123 ASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP 182
                +    F  GVPGSFY RLFPR S+H  HSSY L WLS+VP+GLE NK ++++ ++SP
Sbjct:   168 NITSKESYFVYGVPGSFYSRLFPRRSLHFVHSSYGLHWLSKVPEGLEKNKMSVYITNSSP 227

Query:   183 PCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD-PSSKECCYIWELLATA 241
                  AY  QFQRDF+ FLK RSEE+V+ GRMVLTF+GR + D P  ++CC+ W LL+ +
Sbjct:   228 LSTYKAYLNQFQRDFATFLKLRSEEMVSNGRMVLTFIGRNTIDNPLHRDCCHFWTLLSKS 287

Query:   242 LNNMVSE 248
             L ++V+E
Sbjct:   288 LRDLVAE 294

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 119/250 (47%), Positives = 157/250 (62%)

Query:     4 VQVLHMNGGVGGTSYASNSLVQEKVISIAKPI----TEEAMTKLFCSTSPTKVAIADLGC 59
             V  L MNGG    SY + SL+Q++V+SI  PI    TEE +T L     P  + +ADLGC
Sbjct:    29 VGALCMNGGDVDNSYTTKSLLQKRVLSITNPILVKNTEEMLTNL---DFPKCIKVADLGC 85

Query:    60 SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ 119
             SSG NT L  SE++  +N +C K     PE    LNDLP NDFNT F+ +  F K L   
Sbjct:    86 SSGQNTFLAMSEIVNTINVLCQKWNQSRPEIDCCLNDLPTNDFNTTFKFITFFNKKLTSN 145

Query:   120 LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAS 179
                     G CF +GVPGSFY RLFPR S+H  +S YS+ +LS+VPDGLE NK ++++ S
Sbjct:   146 --------GSCFVSGVPGSFYSRLFPRKSLHFIYSIYSIHFLSKVPDGLEKNKMSVYITS 197

Query:   180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD-PSSKECCYIWELL 238
             +SP     AY  QF+RDF+ FL+ RSEE+V  GRMVLT +GR + D P  ++CC+ W LL
Sbjct:   198 SSPLSEYKAYLNQFKRDFTTFLRMRSEEMVHNGRMVLTLIGRNTLDNPLYRDCCHCWTLL 257

Query:   239 ATALNNMVSE 248
             + +L ++V E
Sbjct:   258 SNSLRDLVFE 267

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 112/244 (45%), Positives = 156/244 (63%)

Query:     6 VLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS-PTKVAIADLGCSSGPN 64
             V+ M GG G  SYA+NS  Q+ + S AKP   +++ ++      P  + +ADLGCSSG N
Sbjct:     3 VVSMKGGDGEHSYANNSEAQKSITSDAKPEVMKSVNEMIVKMDFPGCIKVADLGCSSGEN 62

Query:    65 TLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSAS 124
             T LV SE++  +     + G  LPE    LNDLP NDFNT F+ + SF + L+  +    
Sbjct:    63 TFLVMSEIVNTIITTYQQNGQNLPEIDCCLNDLPENDFNTTFKLIPSFHEKLKMNV---- 118

Query:   125 GAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPC 184
                G C+ +G PGSFY RLFP  S+H  HSS+ L WLS+VPDGLE NK N+++ S  PP 
Sbjct:   119 --KGNCYVSGCPGSFYTRLFPSKSLHFVHSSFCLHWLSKVPDGLEENKKNVYLRSPCPPN 176

Query:   185 VLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNN 244
             +  +Y+ QF++DFS+FL+ R+EE +  GRM LT +GRK+ DP SKEC   W L++ +L +
Sbjct:   177 LYESYWNQFKKDFSMFLRMRAEETMPSGRMALTLVGRKTLDPLSKECFKDWSLVSDSLLD 236

Query:   245 MVSE 248
             +VSE
Sbjct:   237 LVSE 240

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 115/249 (46%), Positives = 156/249 (62%)

Query:     8 HMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLL 67
             +M GG G TSYA NS +Q+K    AK IT E + +L+  T P  + IADLGCSSGPNTL 
Sbjct:    11 YMTGGDGKTSYARNSSLQKKASDTAKHITLETLQQLYKETRPKSLGIADLGCSSGPNTLS 70

Query:    68 VASELIKVVNKICDK-LGSQ-LPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASG 125
               ++ IK V     + +  Q LPEF +FLNDLPGNDFN IF+SL  F   L++   + +G
Sbjct:    71 TITDFIKTVQVAHHREIPIQPLPEFSIFLNDLPGNDFNFIFKSLPDFHIELKRD--NNNG 128

Query:   126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP------DGLESNKGNIFMAS 179
                  F    PGSFYGRLFP N++H  ++S+SL WLS+VP       G   NKG + + S
Sbjct:   129 DCPSVFIAAYPGSFYGRLFPENTIHFVYASHSLHWLSKVPTALYDEQGKSINKGCVSICS 188

Query:   180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLA 239
              S   V  AY  QF+ DFS+FL+CRS+E+V+ GRMVL  LGR+  D   +   + WELL+
Sbjct:   189 LSSEAVSKAYCSQFKEDFSIFLRCRSKEMVSAGRMVLIILGREGPDHVDRGNSFFWELLS 248

Query:   240 TALNNMVSE 248
              ++ ++V++
Sbjct:   249 RSIADLVAQ 257

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 108/241 (44%), Positives = 148/241 (61%)

Query:     9 MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS-PTKVAIADLGCSSGPNTLL 67
             M GG G  SYA+NS  Q  V    +P+  E + ++      P  + +ADLGCS+G NT+L
Sbjct:     1 MKGGTGDHSYATNSHYQRSVFYEIQPLVIENVREMLLKNGFPGCIKVADLGCSTGQNTVL 60

Query:    68 VASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA 127
               S +   + +   ++    PE   +LNDLP NDFNT F+   SFQ+ L+ ++       
Sbjct:    61 AMSAIAYTIMESYQQMSKNPPEIDCYLNDLPENDFNTTFKLFHSFQEKLKPEV------K 114

Query:   128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLT 187
             G+ F +GVPGSFY RLFPR S+H  HS++S+ WLS++PDGLESN  +I +    P  V  
Sbjct:   115 GKWFVSGVPGSFYSRLFPRKSLHFVHSAFSIHWLSRIPDGLESNTKSIHIKYPYPSNVYK 174

Query:   188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVS 247
             +Y  QF+ DFSLFLK RSEE+V  G MVLTF+GRK  D  SK+C  +W LL+  L ++ S
Sbjct:   175 SYLNQFKIDFSLFLKMRSEEVVHNGHMVLTFVGRKVSDTLSKDCFQVWSLLSDCLLDLAS 234

Query:   248 E 248
             E
Sbjct:   235 E 235

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2161680 IAMT1 "AT5G55250" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 93/238 (39%), Positives = 127/238 (53%)

Query:     1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTK--LFCSTSPTKVAIADLG 58
             M++ ++L M GG G  SYA+NS  Q         + EE +    L  S SP      DLG
Sbjct:    13 MKLERLLSMKGGKGQDSYANNSQAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 72

Query:    59 CSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF-QKILR 117
             CSSG NT+ +   ++K ++K  D  G   PEF  F +DLP NDFNT+F+ L         
Sbjct:    73 CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 132

Query:   118 KQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------N 171
             ++  +A G     F  GVPGSFY RLFP  ++  FHS++SL WLSQVP+ +        N
Sbjct:   133 EECLAADGNRSY-FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYN 191

Query:   172 KGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
             +G +F+         TAY  QFQ D + FL+ R+ E+   G M L  LGR S DP+ +
Sbjct:   192 RGRVFIHGAGEKTT-TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQ 248

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IMP

GO:0051749 "indole acetic acid carboxyl methyltransferase activity" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	1e-109
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	2e-52

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score =  318 bits (816), Expect = e-109
 Identities = 123/221 (55%), Positives = 146/221 (66%), Gaps = 19/221 (8%)

Query: 36  TEEAMTKLFC-STSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLG-SQLPEFQVF 93
            EEA+++L   +  P  + IADLGCSSGPNT L  S +I  V K   K    + PEFQVF
Sbjct: 1   LEEAISELLLRNLFPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVF 60

Query: 94  LNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFH 153
            NDLP NDFNT+F+ L  FQK  R             F +GVPGSFYGRLFPRNS+H  H
Sbjct: 61  FNDLPSNDFNTLFKLLPPFQKKKRS-----------YFVSGVPGSFYGRLFPRNSLHFVH 109

Query: 154 SSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207
           SSYSL WLSQVP GLE       NKGNI+++  SP  V  AY +QF++DFSLFL+ R+EE
Sbjct: 110 SSYSLHWLSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEE 169

Query: 208 LVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSE 248
           LV+ G MVLTFLGR S DPS  EC   W+LL  ALN++VSE
Sbjct: 170 LVSGGLMVLTFLGRPSVDPSETECGIFWDLLGDALNDLVSE 210

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score =  174 bits (443), Expect = 2e-52
 Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 13/239 (5%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK-VAIADLGC 59
           M++ ++L M GG G  SYA+NS  Q         + EE +  +  ++SP       DLGC
Sbjct: 13  MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGC 72

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFR---SLASFQKIL 116
           SSG NT+ +   ++K ++K  +  G   PEF  F +DLP NDFNT+F+    LA++   +
Sbjct: 73  SSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSM 132

Query: 117 RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------ 170
            + L  A+      F  GVPGSFY RLFP  S+ +FHS++SL WLSQVP+ +        
Sbjct: 133 EECL--AASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAY 190

Query: 171 NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
           NKG +F+   S      AY  QFQ D + FL+ R++E+   G M L  LGR S DP+ +
Sbjct: 191 NKGRVFIHGASES-TANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQ 248

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.22
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.2
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.1
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.04
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.91
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.9
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.83
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.76
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.75
PLN02244	340	tocopherol O-methyltransferase	98.68
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.66
PRK06922	677	hypothetical protein; Provisional	98.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.57
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.57
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.57
PLN02336	475	phosphoethanolamine N-methyltransferase	98.55
PRK08317	241	hypothetical protein; Provisional	98.48
PRK11207	197	tellurite resistance protein TehB; Provisional	98.48
PLN02336	475	phosphoethanolamine N-methyltransferase	98.46
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.46
PRK05785	226	hypothetical protein; Provisional	98.46
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.45
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.44
KOG2940	325	consensus Predicted methyltransferase [General fun	98.43
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.43
PRK12335	287	tellurite resistance protein TehB; Provisional	98.43
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.37
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.36
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.34
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.33
PRK06202	232	hypothetical protein; Provisional	98.33
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.3
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.29
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.27
PLN02490	340	MPBQ/MSBQ methyltransferase	98.26
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.26
TIGR03438	301	probable methyltransferase. This model represents	98.25
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.24
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.23
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.23
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.21
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.2
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.19
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.18
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.17
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.14
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.13
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.09
PTZ00146	293	fibrillarin; Provisional	98.05
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.02
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.97
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.97
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.94
PRK04266	226	fibrillarin; Provisional	97.93
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.88
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.88
KOG3010	261	consensus Methyltransferase [General function pred	97.86
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.83
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.83
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.82
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.82
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.81
KOG4300	252	consensus Predicted methyltransferase [General fun	97.79
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.75
COG4123	248	Predicted O-methyltransferase [General function pr	97.75
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.74
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.72
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.68
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.64
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.63
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.61
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.55
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.54
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.52
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.5
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.49
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.49
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.44
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.44
PRK14967	223	putative methyltransferase; Provisional	97.42
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.4
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.4
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.37
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.34
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.29
TIGR00438	188	rrmJ cell division protein FtsJ.	97.29
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.28
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.28
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.27
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.25
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.23
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.21
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.21
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.19
KOG2361	264	consensus Predicted methyltransferase [General fun	97.16
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.14
PRK14968	188	putative methyltransferase; Provisional	97.01
PLN03075	296	nicotianamine synthase; Provisional	96.99
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.94
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.92
PHA03411	279	putative methyltransferase; Provisional	96.91
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.79
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.78
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.73
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.72
COG2890	280	HemK Methylase of polypeptide chain release factor	96.71
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.69
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	96.68
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.67
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.67
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.61
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.54
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.53
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.53
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.51
KOG2904	328	consensus Predicted methyltransferase [General fun	96.47
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.47
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.29
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.28
KOG1331	293	consensus Predicted methyltransferase [General fun	96.24
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.17
PRK07402	196	precorrin-6B methylase; Provisional	96.16
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.15
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.14
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.03
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	95.98
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.98
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	95.88
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	95.84
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	95.7
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.69
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.62
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.55
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	95.35
PLN02672	1082	methionine S-methyltransferase	95.3
PRK00811	283	spermidine synthase; Provisional	95.29
PRK03612	521	spermidine synthase; Provisional	95.17
PHA03412	241	putative methyltransferase; Provisional	94.95
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.9
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.53
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	94.49
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	94.42
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	94.36
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	94.29
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.26
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.1
PRK04457	262	spermidine synthase; Provisional	94.07
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.05
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	93.86
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	93.54
PLN02366	308	spermidine synthase	93.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.79
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	92.47
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	92.39
PRK01581	374	speE spermidine synthase; Validated	92.01
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	90.59
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	90.35
PF13679	141	Methyltransf_32: Methyltransferase domain	89.6
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	89.14
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	89.05
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	88.12
PLN02589	247	caffeoyl-CoA O-methyltransferase	87.94
PLN02476	278	O-methyltransferase	87.48
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	87.46
KOG2899	288	consensus Predicted methyltransferase [General fun	87.37
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	87.09
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	86.88
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	86.76
COG4122	219	Predicted O-methyltransferase [General function pr	86.53
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	86.46
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	86.04
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	83.59
COG4976	287	Predicted methyltransferase (contains TPR repeat)	83.12
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	83.04
PRK04148	134	hypothetical protein; Provisional	83.04
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	82.12
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	81.73
KOG1271	227	consensus Methyltransferases [General function pre	81.69
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	81.19
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	80.34
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	80.03

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=7e-83  Score=604.57  Aligned_cols=261  Identities=37%  Similarity=0.622  Sum_probs=237.8

Q ss_pred             CcccceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCC-CceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331            1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSP-TKVAIADLGCSSGPNTLLVASELIKVVNKI   79 (269)
Q Consensus         1 ~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~   79 (269)
                      |+++++|||+||+|++||++||.+|+.++..++|+|+++|++++....+ ++++|||||||+|+||+.++++||++|+++
T Consensus        13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~   92 (386)
T PLN02668         13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR   92 (386)
T ss_pred             ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999998654434 689999999999999999999999999999


Q ss_pred             HHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHH--HHh----cCCCCCCCCceEEeecCCCccCCCCCCCceeeEe
Q 024331           80 CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL--RKQ----LGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFH  153 (269)
Q Consensus        80 ~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~--~~~----~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~  153 (269)
                      |.+.+..+|++||||||||+||||+||++|+.+.+.+  ..+    .+.     ++||++|||||||+||||++|+||+|
T Consensus        93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-----~~~f~~gvpGSFY~RLfP~~Slh~~~  167 (386)
T PLN02668         93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-----RSYFAAGVPGSFYRRLFPARSIDVFH  167 (386)
T ss_pred             hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-----CceEEEecCccccccccCCCceEEEE
Confidence            9887778899999999999999999999999876532  111    111     35999999999999999999999999


Q ss_pred             ccccccccccCCCCCCC------CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCC
Q 024331          154 SSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPS  227 (269)
Q Consensus       154 Ss~alHWLS~~P~~l~~------nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~  227 (269)
                      |++|||||||+|+.+.+      |||+||+.+++ ++|.+||++||++||..||++||+||+|||+|+++++||++.++.
T Consensus       168 Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~  246 (386)
T PLN02668        168 SAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPT  246 (386)
T ss_pred             eeccceecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcc
Confidence            99999999999999874      99999999887 789999999999999999999999999999999999999887777


Q ss_pred             Chh-hhHHHHH-HHHHHHHHHHccCcccccccceeccccccc
Q 024331          228 SKE-CCYIWEL-LATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       228 ~~~-~~~~~~~-l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      .++ .+.+|+. ++++|+|||.||+|++|++|+||+|.|.+.
T Consensus       247 ~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps  288 (386)
T PLN02668        247 DQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPS  288 (386)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCC
Confidence            655 5667887 999999999999999999999999999874

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=4.3e-74  Score=538.57  Aligned_cols=224  Identities=57%  Similarity=0.923  Sum_probs=188.6

Q ss_pred             HHHHHHhhcc-cCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcC-CCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331           36 TEEAMTKLFC-STSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLG-SQLPEFQVFLNDLPGNDFNTIFRSLASFQ  113 (269)
Q Consensus        36 l~~ai~~~~~-~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~-~~~p~~qv~~nDLP~NDFntLF~~l~~~~  113 (269)
                      ||+||.+++. ...+++++|||||||+|+||+.+++.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus         1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~   80 (334)
T PF03492_consen    1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ   80 (334)
T ss_dssp             -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred             ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence            5889999885 447789999999999999999999999999999998776 78899999999999999999999999998


Q ss_pred             HHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC------CCcceEEcCCCCHHHHH
Q 024331          114 KILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLT  187 (269)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~------nkg~i~~~~~s~~~v~~  187 (269)
                      +++.+.        ++||++|||||||+||||++||||+||++||||||++|+.+.+      |||+||+.++++++|.+
T Consensus        81 ~~~~~~--------~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~  152 (334)
T PF03492_consen   81 QSLKKF--------RNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAK  152 (334)
T ss_dssp             HHHHHT--------TSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHH
T ss_pred             hccCCC--------ceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHH
Confidence            777651        5899999999999999999999999999999999999999988      99999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccccccc
Q 024331          188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      ||++||++||.+||++||+||||||+|+++++|+++.++...+.+.+|++++++|+|||.||+|++|++|+||+|.|.+.
T Consensus       153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps  232 (334)
T PF03492_consen  153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPS  232 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---
T ss_pred             HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCC
Confidence            99999999999999999999999999999999999877766556789999999999999999999999999999999875

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.22  E-value=5.2e-11  Score=104.06  Aligned_cols=134  Identities=19%  Similarity=0.273  Sum_probs=93.9

Q ss_pred             CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331           15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL   94 (269)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~   94 (269)
                      ..+|++.+..|+.....+++.+...       ....+.+|+|+|||+|..+..+.        +..       |..+++.
T Consensus         6 ~~~y~~~~~~q~~~~~~l~~~~~~~-------~~~~~~~vLDlG~G~G~~~~~l~--------~~~-------~~~~~~~   63 (240)
T TIGR02072         6 AKTYDRHAKIQREMAKRLLALLKEK-------GIFIPASVLDIGCGTGYLTRALL--------KRF-------PQAEFIA   63 (240)
T ss_pred             hhchhHHHHHHHHHHHHHHHHhhhh-------ccCCCCeEEEECCCccHHHHHHH--------HhC-------CCCcEEE
Confidence            4679999999998888887777651       12345899999999999877666        432       4577899


Q ss_pred             cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331           95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN  174 (269)
Q Consensus        95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~  174 (269)
                      .|......           ...+.....     +-.++.   +++...++|++++|+++++.++||+..           
T Consensus        64 ~D~~~~~~-----------~~~~~~~~~-----~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~-----------  113 (240)
T TIGR02072        64 LDISAGML-----------AQAKTKLSE-----NVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDD-----------  113 (240)
T ss_pred             EeChHHHH-----------HHHHHhcCC-----CCeEEe---cchhhCCCCCCceeEEEEhhhhhhccC-----------
Confidence            99755411           112211111     113433   788888999999999999999999532           


Q ss_pred             eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                                            ...+|+.-.+-|+|||.++++.++..
T Consensus       114 ----------------------~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       114 ----------------------LSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             ----------------------HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence                                  22355555778889999999887654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.20  E-value=5.8e-11  Score=106.38  Aligned_cols=127  Identities=16%  Similarity=0.191  Sum_probs=86.7

Q ss_pred             chHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEec
Q 024331           16 TSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLN   95 (269)
Q Consensus        16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~n   95 (269)
                      .+|++++.+|+.+...+...+..          ...-+|+|+|||+|..+..+.        ++         ..+|+..
T Consensus        18 ~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~   70 (251)
T PRK10258         18 AHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL   70 (251)
T ss_pred             HhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence            57999999998888777655432          135689999999998766543        22         2689999


Q ss_pred             CCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcce
Q 024331           96 DLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNI  175 (269)
Q Consensus        96 DLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i  175 (269)
                      |+...          +. +..+++. .     ...|+.   +++...++|++++|+++|+.++||+.+.+          
T Consensus        71 D~s~~----------~l-~~a~~~~-~-----~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d~~----------  120 (251)
T PRK10258         71 DLSPP----------ML-AQARQKD-A-----ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGNLS----------  120 (251)
T ss_pred             ECCHH----------HH-HHHHhhC-C-----CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCCHH----------
Confidence            98654          22 1122211 1     123444   78888889999999999999999954321          


Q ss_pred             EEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          176 FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       176 ~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                                             .+|+.=.+-|+|||.++++.++..
T Consensus       121 -----------------------~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        121 -----------------------TALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             -----------------------HHHHHHHHHcCCCeEEEEEeCCCC
Confidence                                   122222567779999999998764

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.10  E-value=1.9e-10  Score=103.74  Aligned_cols=112  Identities=20%  Similarity=0.260  Sum_probs=83.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ++.+|+|+|||||--++.++        +..       ++.+|+..|...+          |+..-..+....++  ..=
T Consensus        51 ~g~~vLDva~GTGd~a~~~~--------k~~-------g~g~v~~~D~s~~----------ML~~a~~k~~~~~~--~~i  103 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLA--------KSV-------GTGEVVGLDISES----------MLEVAREKLKKKGV--QNV  103 (238)
T ss_pred             CCCEEEEecCCccHHHHHHH--------Hhc-------CCceEEEEECCHH----------HHHHHHHHhhccCc--cce
Confidence            57999999999999998887        553       2689999999888          65332222111111  011


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   |++.+.+||++|+|++.+++.||++.+.+..                  .++.               +|.||
T Consensus       104 ~fv~---~dAe~LPf~D~sFD~vt~~fglrnv~d~~~a------------------L~E~---------------~RVlK  147 (238)
T COG2226         104 EFVV---GDAENLPFPDNSFDAVTISFGLRNVTDIDKA------------------LKEM---------------YRVLK  147 (238)
T ss_pred             EEEE---echhhCCCCCCccCEEEeeehhhcCCCHHHH------------------HHHH---------------HHhhc
Confidence            3444   9999999999999999999999998765543                  3344               67888


Q ss_pred             cCCeEEEEecccCCC
Q 024331          210 AEGRMVLTFLGRKSQ  224 (269)
Q Consensus       210 pGG~lv~~~~g~~~~  224 (269)
                      |||++++.-++..+.
T Consensus       148 pgG~~~vle~~~p~~  162 (238)
T COG2226         148 PGGRLLVLEFSKPDN  162 (238)
T ss_pred             CCeEEEEEEcCCCCc
Confidence            999999999888754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.04  E-value=6e-10  Score=100.32  Aligned_cols=126  Identities=18%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331           15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL   94 (269)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~   94 (269)
                      ...|.+++..|.+.+..++..+.          ...+.+|+|+|||+|..+..+.        +++       |..+|+.
T Consensus         4 ~~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~--------~~~-------p~~~v~g   58 (255)
T PRK14103          4 PDVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLA--------RRW-------PGAVIEA   58 (255)
T ss_pred             HHHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHH--------HHC-------CCCEEEE
Confidence            35799999999776654433322          2245899999999998776555        442       5678999


Q ss_pred             cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331           95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN  174 (269)
Q Consensus        95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~  174 (269)
                      .|+..+          +.. ..+++        .--|+.   +++.. +.|++++|+++|+.++||+.+.+         
T Consensus        59 vD~s~~----------~~~-~a~~~--------~~~~~~---~d~~~-~~~~~~fD~v~~~~~l~~~~d~~---------  106 (255)
T PRK14103         59 LDSSPE----------MVA-AARER--------GVDART---GDVRD-WKPKPDTDVVVSNAALQWVPEHA---------  106 (255)
T ss_pred             EECCHH----------HHH-HHHhc--------CCcEEE---cChhh-CCCCCCceEEEEehhhhhCCCHH---------
Confidence            998654          221 12211        112333   66654 45788999999999999974311         


Q ss_pred             eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331          175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                               .+.+..               .+.|+|||.+++.+.+.
T Consensus       107 ---------~~l~~~---------------~~~LkpgG~l~~~~~~~  129 (255)
T PRK14103        107 ---------DLLVRW---------------VDELAPGSWIAVQVPGN  129 (255)
T ss_pred             ---------HHHHHH---------------HHhCCCCcEEEEEcCCC
Confidence                     111111               45677999999987653

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.91  E-value=1.4e-08  Score=92.32  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC---CCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG---SASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~---~~~~~  126 (269)
                      +..+|+|+|||+|..+..+.        +++      .|..+|+..|+..+          ++.. .+++..   ...  
T Consensus        73 ~~~~VLDlGcGtG~~~~~la--------~~~------~~~~~V~gvD~S~~----------ml~~-A~~r~~~~~~~~--  125 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLS--------EKV------GSDGKVMGLDFSSE----------QLAV-AASRQELKAKSC--  125 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHH--------HHh------CCCCEEEEEECCHH----------HHHH-HHHHhhhhhhcc--
Confidence            45799999999999776555        442      24578999998877          3321 221110   000  


Q ss_pred             CCc-eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          127 AGQ-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       127 ~~~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      ..+ .|+.   ++....+||++|+|++++++++||+.+.                  ..+.++.               .
T Consensus       126 ~~~i~~~~---~d~~~lp~~~~sfD~V~~~~~l~~~~d~------------------~~~l~ei---------------~  169 (261)
T PLN02233        126 YKNIEWIE---GDATDLPFDDCYFDAITMGYGLRNVVDR------------------LKAMQEM---------------Y  169 (261)
T ss_pred             CCCeEEEE---cccccCCCCCCCEeEEEEecccccCCCH------------------HHHHHHH---------------H
Confidence            012 2433   7888889999999999999999996431                  1122222               5


Q ss_pred             hhhccCCeEEEEecccCC
Q 024331          206 EELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~~  223 (269)
                      |.|||||+++++.+...+
T Consensus       170 rvLkpGG~l~i~d~~~~~  187 (261)
T PLN02233        170 RVLKPGSRVSILDFNKST  187 (261)
T ss_pred             HHcCcCcEEEEEECCCCC
Confidence            678899999999887654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.90  E-value=4.2e-09  Score=94.60  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331           15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL   94 (269)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~   94 (269)
                      +..|.+++..|.+.....+..+.          ..+..+|+|+|||+|..+..++        +++       |..+|+.
T Consensus         6 ~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la--------~~~-------~~~~v~g   60 (258)
T PRK01683          6 PSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLV--------ERW-------PAARITG   60 (258)
T ss_pred             HHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHH--------HHC-------CCCEEEE
Confidence            35799988888665544432221          2345799999999999987766        443       4578999


Q ss_pred             cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331           95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN  174 (269)
Q Consensus        95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~  174 (269)
                      .|+...          +. +..+++. .     .--|+.   +++.. +.|++++|+++|+.++||+.+.          
T Consensus        61 vD~s~~----------~i-~~a~~~~-~-----~~~~~~---~d~~~-~~~~~~fD~v~~~~~l~~~~d~----------  109 (258)
T PRK01683         61 IDSSPA----------ML-AEARSRL-P-----DCQFVE---ADIAS-WQPPQALDLIFANASLQWLPDH----------  109 (258)
T ss_pred             EECCHH----------HH-HHHHHhC-C-----CCeEEE---Cchhc-cCCCCCccEEEEccChhhCCCH----------
Confidence            997764          21 1122211 1     112333   56543 3577899999999999996321          


Q ss_pred             eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecc
Q 024331          175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                                             ..+|+.=.+.|+|||.+++++.+
T Consensus       110 -----------------------~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683        110 -----------------------LELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             -----------------------HHHHHHHHHhcCCCcEEEEECCC
Confidence                                   11222235578899999998643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.88  E-value=3.3e-09  Score=79.24  Aligned_cols=73  Identities=29%  Similarity=0.364  Sum_probs=49.1

Q ss_pred             EeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEee
Q 024331           55 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTG  134 (269)
Q Consensus        55 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~  134 (269)
                      +|+|||+|..+..+.        ++        +..+|+..|....          +. +..++.....    ..-+.. 
T Consensus         1 LdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~~~~----------~~-~~~~~~~~~~----~~~~~~-   48 (95)
T PF08241_consen    1 LDIGCGTGRFAAALA--------KR--------GGASVTGIDISEE----------ML-EQARKRLKNE----GVSFRQ-   48 (95)
T ss_dssp             EEET-TTSHHHHHHH--------HT--------TTCEEEEEES-HH----------HH-HHHHHHTTTS----TEEEEE-
T ss_pred             CEecCcCCHHHHHHH--------hc--------cCCEEEEEeCCHH----------HH-HHHHhccccc----Cchhee-
Confidence            799999999988777        43        3588899887665          22 2233322110    112444 


Q ss_pred             cCCCccCCCCCCCceeeEecccccccc
Q 024331          135 VPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       135 vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                        ++++..+||++|+|++++..++||+
T Consensus        49 --~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen   49 --GDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             --SBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             --ehHHhCccccccccccccccceeec
Confidence              8899999999999999999999997

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.83  E-value=4.5e-09  Score=94.43  Aligned_cols=111  Identities=22%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ++.+|+|+|||||-.|..++        ++.      .|..+|+..|+..+          |+.. .+++. ..+.   .
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~--------~~~------~~~~~v~~vD~s~~----------ML~~-a~~k~~~~~~---~   98 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELA--------RRV------GPNGKVVGVDISPG----------MLEV-ARKKLKREGL---Q   98 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHG--------GGS------S---EEEEEES-HH----------HHHH-HHHHHHHTT-----
T ss_pred             CCCEEEEeCCChHHHHHHHH--------HHC------CCccEEEEecCCHH----------HHHH-HHHHHHhhCC---C
Confidence            46799999999998887666        432      25679999998877          5432 22111 1111   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +.-+-|+....+||++|+|.+++++.+|-+.+.                  +.+.++.               .|.|
T Consensus        99 ~--i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~------------------~~~l~E~---------------~RVL  143 (233)
T PF01209_consen   99 N--IEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDR------------------ERALREM---------------YRVL  143 (233)
T ss_dssp             S--EEEEE-BTTB--S-TT-EEEEEEES-GGG-SSH------------------HHHHHHH---------------HHHE
T ss_pred             C--eeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCH------------------HHHHHHH---------------HHHc
Confidence            2  223348999999999999999999999986431                  1222233               5778


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      ||||++++.-++++.
T Consensus       144 kPGG~l~ile~~~p~  158 (233)
T PF01209_consen  144 KPGGRLVILEFSKPR  158 (233)
T ss_dssp             EEEEEEEEEEEEB-S
T ss_pred             CCCeEEEEeeccCCC
Confidence            899999999888864

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.76  E-value=1.8e-07  Score=85.13  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=71.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +.+        ..+|+..|+..+          +. +..+++....    .+
T Consensus        52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~----------~~-~~a~~~~~~~----~~  100 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEK----------MV-NIAKLRNSDK----NK  100 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHH----------HH-HHHHHHcCcC----Cc
Confidence            45799999999999877665        321        368999998765          21 1122221110    11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.+++....||++++|+++|..++++++.                               .|...+|+.=++-|+
T Consensus       101 --i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~-------------------------------~d~~~~l~~i~r~Lk  147 (263)
T PTZ00098        101 --IEFEANDILKKDFPENTFDMIYSRDAILHLSY-------------------------------ADKKKLFEKCYKWLK  147 (263)
T ss_pred             --eEEEECCcccCCCCCCCeEEEEEhhhHHhCCH-------------------------------HHHHHHHHHHHHHcC
Confidence              22234788888999999999999887765321                               133334444467788


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||+++++-.....
T Consensus       148 PGG~lvi~d~~~~~  161 (263)
T PTZ00098        148 PNGILLITDYCADK  161 (263)
T ss_pred             CCcEEEEEEecccc
Confidence            99999998775543

>TIGR00740 methyltransferase, putative

Probab=98.75  E-value=1.1e-07  Score=84.64  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=71.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++     ..|..+++..|+..+ .      +....+.+.. .+..    .+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~--------~~~-----~~p~~~v~gvD~s~~-m------l~~a~~~~~~-~~~~----~~  107 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNSQP-M------VERCRQHIAA-YHSE----IP  107 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHH-H------HHHHHHHHHh-cCCC----CC
Confidence            45689999999999888776        432     236789999998664 1      1111111111 1111    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +.-+.+++....+|+  .|++++++++||++.                               .|...+|+.=.+.|+
T Consensus       108 --v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~Lk  152 (239)
T TIGR00740       108 --VEILCNDIRHVEIKN--ASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLN  152 (239)
T ss_pred             --eEEEECChhhCCCCC--CCEEeeecchhhCCH-------------------------------HHHHHHHHHHHHhcC
Confidence              222448888776664  789999999999632                               122344455567788


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++...+.
T Consensus       153 pgG~l~i~d~~~~  165 (239)
T TIGR00740       153 PNGVLVLSEKFRF  165 (239)
T ss_pred             CCeEEEEeecccC
Confidence            9999999876554

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02244 tocopherol O-methyltransferase

Probab=98.68  E-value=2.5e-07  Score=87.30  Aligned_cols=110  Identities=17%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++        ..+|+..|+..+        .-.......++.+..-   .-
T Consensus       118 ~~~~VLDiGCG~G~~~~~La--------~~~--------g~~v~gvD~s~~--------~i~~a~~~~~~~g~~~---~v  170 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLA--------RKY--------GANVKGITLSPV--------QAARANALAAAQGLSD---KV  170 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHH--------Hhc--------CCEEEEEECCHH--------HHHHHHHHHHhcCCCC---ce
Confidence            46799999999999988777        442        267888887654        1011111111112110   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++....||++++|+++|..++|++.+.                  .               .+|+.=.+.|+
T Consensus       171 ~~~~---~D~~~~~~~~~~FD~V~s~~~~~h~~d~------------------~---------------~~l~e~~rvLk  214 (340)
T PLN02244        171 SFQV---ADALNQPFEDGQFDLVWSMESGEHMPDK------------------R---------------KFVQELARVAA  214 (340)
T ss_pred             EEEE---cCcccCCCCCCCccEEEECCchhccCCH------------------H---------------HHHHHHHHHcC
Confidence            3433   7888889999999999999998875321                  1               11111156677


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++.....
T Consensus       215 pGG~lvi~~~~~~  227 (340)
T PLN02244        215 PGGRIIIVTWCHR  227 (340)
T ss_pred             CCcEEEEEEeccc
Confidence            9999999876543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.66  E-value=2.6e-07  Score=83.17  Aligned_cols=83  Identities=18%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|.+++.+.        +..     ..|..+|+..|+...          +. +..+++. ..+.  ..
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~--------~~~-----~~~~~~v~gvD~S~~----------ml-~~A~~~~~~~~~--~~  109 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNSPA----------MI-ERCRRHIDAYKA--PT  109 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHH----------HH-HHHHHHHHhcCC--CC
Confidence            45799999999999887766        421     236789999998665          32 1122221 1111  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS  162 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS  162 (269)
                      +  +..+.+++...+++  ..|++++++++|+++
T Consensus       110 ~--v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~  139 (247)
T PRK15451        110 P--VDVIEGDIRDIAIE--NASMVVLNFTLQFLE  139 (247)
T ss_pred             C--eEEEeCChhhCCCC--CCCEEehhhHHHhCC
Confidence            2  22244777776555  479999999999975

>PRK06922 hypothetical protein; Provisional

Probab=98.59  E-value=1.5e-07  Score=95.36  Aligned_cols=116  Identities=18%  Similarity=0.184  Sum_probs=76.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..++        +++       |..+|+..|++.+          +.. .++++. ..+.   +
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA--------~~~-------P~~kVtGIDIS~~----------MLe-~Ararl~~~g~---~  468 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIE--------EET-------EDKRIYGIDISEN----------VID-TLKKKKQNEGR---S  468 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HhC-------CCCEEEEEECCHH----------HHH-HHHHHhhhcCC---C
Confidence            35799999999998766555        433       6789999999886          322 122221 1111   1


Q ss_pred             ceEEeecCCCccCCC--CCCCceeeEecccccccc-ccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          129 QCFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWL-SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       129 ~~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWL-S~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      -.++.   ++.....  ||++|+|++++++++||+ +.+|..-     .             +|   ..++...+|+.=.
T Consensus       469 ie~I~---gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g-----~-------------~f---~~edl~kiLreI~  524 (677)
T PRK06922        469 WNVIK---GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEG-----K-------------KF---NHEVIKKGLQSAY  524 (677)
T ss_pred             eEEEE---cchHhCccccCCCCEEEEEEchHHHhhhhhccccc-----c-------------cc---cHHHHHHHHHHHH
Confidence            12333   5665544  899999999999999964 5555311     0             11   1246667777777


Q ss_pred             hhhccCCeEEEEe
Q 024331          206 EELVAEGRMVLTF  218 (269)
Q Consensus       206 ~EL~pGG~lv~~~  218 (269)
                      +.|||||++++.-
T Consensus       525 RVLKPGGrLII~D  537 (677)
T PRK06922        525 EVLKPGGRIIIRD  537 (677)
T ss_pred             HHcCCCcEEEEEe
Confidence            8889999999974

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.57  E-value=1.9e-07  Score=81.25  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=62.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      .+.+|+|+|||+|.+++.++        ++         ..+|+..|+..+ .      +........ +.+  .    +
T Consensus        30 ~~~~vLDiGcG~G~~a~~la--------~~---------g~~V~~iD~s~~-~------l~~a~~~~~-~~~--~----~   78 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLS--------LA---------GYDVRAWDHNPA-S------IASVLDMKA-REN--L----P   78 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECCHH-H------HHHHHHHHH-HhC--C----C
Confidence            35799999999999999887        32         268999998654 1      111111111 111  1    1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +.....++....++ +++|+++|+.++|+++.                               .++..+++.-++-|+
T Consensus        79 --v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~Lk  124 (195)
T TIGR00477        79 --LRTDAYDINAAALN-EDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTR  124 (195)
T ss_pred             --ceeEeccchhcccc-CCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhC
Confidence              11222343333344 68999999999998632                               233344555566677


Q ss_pred             cCCeEEEEe
Q 024331          210 AEGRMVLTF  218 (269)
Q Consensus       210 pGG~lv~~~  218 (269)
                      |||++++..
T Consensus       125 pgG~lli~~  133 (195)
T TIGR00477       125 PGGYNLIVA  133 (195)
T ss_pred             CCcEEEEEE
Confidence            999965543

Part of a tellurite-reducing operon tehA and tehB

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.57  E-value=2.3e-07  Score=81.78  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..+.        +.+      .|..+|+..|+..+          +. +..+.+. ..+.   .
T Consensus        45 ~~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~----------~~-~~a~~~~~~~~~---~   96 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALA--------EAV------GPEGHVIGLDFSEN----------ML-SVGRQKVKDAGL---H   96 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHH--------HHh------CCCCEEEEEECCHH----------HH-HHHHHHHHhcCC---C
Confidence            35799999999999887666        442      24578999998664          11 1111111 1111   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +.-+.+++....+|++++|++++.+++||++..                                 ..+|+.=.+-|
T Consensus        97 ~--v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------~~~l~~~~~~L  141 (231)
T TIGR02752        97 N--VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDY---------------------------------MQVLREMYRVV  141 (231)
T ss_pred             c--eEEEEechhcCCCCCCCccEEEEecccccCCCH---------------------------------HHHHHHHHHHc
Confidence            2  222447777778899999999999999986421                                 12233335667


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||++++...+..
T Consensus       142 k~gG~l~~~~~~~~  155 (231)
T TIGR02752       142 KPGGKVVCLETSQP  155 (231)
T ss_pred             CcCeEEEEEECCCC
Confidence            79999998766543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.57  E-value=2e-07  Score=84.05  Aligned_cols=82  Identities=18%  Similarity=0.310  Sum_probs=52.4

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      +.+.+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +.++++. ..+.  .
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la--------~~---------g~~v~~vD~s~~----------~l-~~a~~~~~~~g~--~   92 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLA--------EL---------GHQVILCDLSAE----------MI-QRAKQAAEAKGV--S   92 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHH--------Hc---------CCEEEEEECCHH----------HH-HHHHHHHHhcCC--c
Confidence            346899999999999888776        32         267889997665          21 1122111 0111  0


Q ss_pred             Cc-eEEeecCCCccCC-CCCCCceeeEecccccccccc
Q 024331          128 GQ-CFFTGVPGSFYGR-LFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       128 ~~-~f~~~vpgSFy~~-lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      .+ .++.   +++... .++++++|++++..++||+.+
T Consensus        93 ~~v~~~~---~d~~~l~~~~~~~fD~V~~~~vl~~~~~  127 (255)
T PRK11036         93 DNMQFIH---CAAQDIAQHLETPVDLILFHAVLEWVAD  127 (255)
T ss_pred             cceEEEE---cCHHHHhhhcCCCCCEEEehhHHHhhCC
Confidence            12 2333   666554 367899999999999999743

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.55  E-value=1.1e-06  Score=86.05  Aligned_cols=108  Identities=19%  Similarity=0.320  Sum_probs=70.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|..++.+.        +..        ..+|+..|+...          ++. ..+++. +...   .
T Consensus       266 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvDiS~~----------~l~-~A~~~~~~~~~---~  315 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMA--------ENF--------DVHVVGIDLSVN----------MIS-FALERAIGRKC---S  315 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHH--------Hhc--------CCEEEEEECCHH----------HHH-HHHHHhhcCCC---c
Confidence            45799999999998776555        331        368999998754          221 111111 1110   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|..   +++....+|++++|+++|..+++|+.+                  ++.+.        +.+       ++-|
T Consensus       316 v~~~~---~d~~~~~~~~~~fD~I~s~~~l~h~~d------------------~~~~l--------~~~-------~r~L  359 (475)
T PLN02336        316 VEFEV---ADCTKKTYPDNSFDVIYSRDTILHIQD------------------KPALF--------RSF-------FKWL  359 (475)
T ss_pred             eEEEE---cCcccCCCCCCCEEEEEECCcccccCC------------------HHHHH--------HHH-------HHHc
Confidence            12333   788888999999999999999998633                  11111        222       5567


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||+++++.+.+..
T Consensus       360 kpgG~l~i~~~~~~~  374 (475)
T PLN02336        360 KPGGKVLISDYCRSP  374 (475)
T ss_pred             CCCeEEEEEEeccCC
Confidence            799999999887654

>PRK08317 hypothetical protein; Provisional

Probab=98.48  E-value=3.8e-06  Score=73.04  Aligned_cols=108  Identities=23%  Similarity=0.248  Sum_probs=69.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh-cCCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ-LGSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~-~~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..++        +++      .|..+++..|+..+          .. +..+++ .....   .
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a--------~~~------~~~~~v~~~d~~~~----------~~-~~a~~~~~~~~~---~   70 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELA--------RRV------GPEGRVVGIDRSEA----------ML-ALAKERAAGLGP---N   70 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------Hhc------CCCcEEEEEeCCHH----------HH-HHHHHHhhCCCC---c
Confidence            45799999999998877666        432      14578999998654          11 112221 11110   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|+.   +++....++++++|++++..++||+.+                                 +..+|+.-.+-|
T Consensus        71 ~~~~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~---------------------------------~~~~l~~~~~~L  114 (241)
T PRK08317         71 VEFVR---GDADGLPFPDGSFDAVRSDRVLQHLED---------------------------------PARALAEIARVL  114 (241)
T ss_pred             eEEEe---cccccCCCCCCCceEEEEechhhccCC---------------------------------HHHHHHHHHHHh
Confidence            22333   677777889999999999999988643                                 112233335567


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||.+++.....
T Consensus       115 ~~gG~l~~~~~~~  127 (241)
T PRK08317        115 RPGGRVVVLDTDW  127 (241)
T ss_pred             cCCcEEEEEecCC
Confidence            7999999987654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.48  E-value=5.8e-07  Score=78.29  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +.+|+|+|||+|.+++.++        ++         ..+|+..|+..+ .      +..... .....+  +   .+ 
T Consensus        31 ~~~vLDiGcG~G~~a~~La--------~~---------g~~V~gvD~S~~-~------i~~a~~-~~~~~~--~---~~-   79 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLA--------AN---------GFDVTAWDKNPM-S------IANLER-IKAAEN--L---DN-   79 (197)
T ss_pred             CCcEEEECCCCCHHHHHHH--------HC---------CCEEEEEeCCHH-H------HHHHHH-HHHHcC--C---Cc-
Confidence            4799999999999998877        32         268889998654 1      111111 111111  1   11 


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS  162 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS  162 (269)
                       +..+.+++....++ +++|+++|+.++||++
T Consensus        80 -v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~  109 (197)
T PRK11207         80 -LHTAVVDLNNLTFD-GEYDFILSTVVLMFLE  109 (197)
T ss_pred             -ceEEecChhhCCcC-CCcCEEEEecchhhCC
Confidence             22333566655554 6799999999999964

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.46  E-value=9.6e-07  Score=86.35  Aligned_cols=103  Identities=19%  Similarity=0.154  Sum_probs=67.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc-
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ-  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~-  129 (269)
                      ..+|+|+|||+|..+..+.        +++         .+|+..|....          +.. ......+. .   .+ 
T Consensus        38 ~~~vLDlGcG~G~~~~~la--------~~~---------~~v~giD~s~~----------~l~-~a~~~~~~-~---~~i   85 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELA--------KKA---------GQVIALDFIES----------VIK-KNESINGH-Y---KNV   85 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHH--------hhC---------CEEEEEeCCHH----------HHH-HHHHHhcc-C---Cce
Confidence            4589999999999998877        332         36788885443          221 11111111 1   12 


Q ss_pred             eEEeecCCCcc--CCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 CFFTGVPGSFY--GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 ~f~~~vpgSFy--~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .++.   +++.  ...+|++++|++++..++||++.                               .++..+|+.-.+-
T Consensus        86 ~~~~---~d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~  131 (475)
T PLN02336         86 KFMC---ADVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKW  131 (475)
T ss_pred             EEEE---ecccccccCCCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHh
Confidence            2433   5554  35689999999999999999743                               2334555555777


Q ss_pred             hccCCeEEEEec
Q 024331          208 LVAEGRMVLTFL  219 (269)
Q Consensus       208 L~pGG~lv~~~~  219 (269)
                      |+|||++++.-.
T Consensus       132 Lk~gG~l~~~d~  143 (475)
T PLN02336        132 LKVGGYIFFRES  143 (475)
T ss_pred             cCCCeEEEEEec
Confidence            889999998744

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.46  E-value=5.7e-07  Score=84.61  Aligned_cols=108  Identities=17%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..+.        +         +..+|+..|....          +. +..+.+.. ... ...
T Consensus       131 ~g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s~~----------~i-~~Ar~~~~~~~~-~~~  181 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAVDK----------NV-KIARLHADMDPV-TST  181 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCCHH----------HH-HHHHHHHHhcCc-ccc
Confidence            34699999999999876554        2         2368999997754          11 11221111 000 001


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|+.   +++....++++++|++++...||++.+.                                 ..||+.=++-|
T Consensus       182 i~~~~---~dae~l~~~~~~FD~Vi~~~vLeHv~d~---------------------------------~~~L~~l~r~L  225 (322)
T PLN02396        182 IEYLC---TTAEKLADEGRKFDAVLSLEVIEHVANP---------------------------------AEFCKSLSALT  225 (322)
T ss_pred             eeEEe---cCHHHhhhccCCCCEEEEhhHHHhcCCH---------------------------------HHHHHHHHHHc
Confidence            12333   7888878889999999999999986431                                 12333335667


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      ||||+++++++.+.
T Consensus       226 kPGG~liist~nr~  239 (322)
T PLN02396        226 IPNGATVLSTINRT  239 (322)
T ss_pred             CCCcEEEEEECCcC
Confidence            79999999987653

>PRK05785 hypothetical protein; Provisional

Probab=98.46  E-value=1.1e-06  Score=78.30  Aligned_cols=74  Identities=19%  Similarity=0.198  Sum_probs=54.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +.+|+|+|||||..+..+.        +++        ..+|+..|+..+          ++.. .+.+         .-
T Consensus        52 ~~~VLDlGcGtG~~~~~l~--------~~~--------~~~v~gvD~S~~----------Ml~~-a~~~---------~~   95 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFK--------KVF--------KYYVVALDYAEN----------MLKM-NLVA---------DD   95 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEECCCHH----------HHHH-HHhc---------cc
Confidence            5799999999998877665        431        258999998766          4322 1211         12


Q ss_pred             EEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      ++   -+++...+||++|+|+++|+++|||..+
T Consensus        96 ~~---~~d~~~lp~~d~sfD~v~~~~~l~~~~d  125 (226)
T PRK05785         96 KV---VGSFEALPFRDKSFDVVMSSFALHASDN  125 (226)
T ss_pred             eE---EechhhCCCCCCCEEEEEecChhhccCC
Confidence            33   3788999999999999999999999654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.45  E-value=1.2e-06  Score=79.81  Aligned_cols=75  Identities=21%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +...    .....+|+..|+..+          +.. ...++. .     .-
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~--------~~~~----~~~~~~v~giD~s~~----------~l~-~A~~~~-~-----~~  135 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALA--------DALP----EITTMQLFGLDISKV----------AIK-YAAKRY-P-----QV  135 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHH--------Hhcc----cccCCeEEEECCCHH----------HHH-HHHHhC-C-----CC
Confidence            34789999999999887776        3321    111258999998765          322 122211 1     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSY  156 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~  156 (269)
                      .|+.   ++....+|+++|+|+++|.+
T Consensus       136 ~~~~---~d~~~lp~~~~sfD~I~~~~  159 (272)
T PRK11088        136 TFCV---ASSHRLPFADQSLDAIIRIY  159 (272)
T ss_pred             eEEE---eecccCCCcCCceeEEEEec
Confidence            3433   67778889999999999854

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.44  E-value=2.4e-06  Score=66.40  Aligned_cols=108  Identities=21%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..++.++        ++.       |..+|+..|.... +      +....+.... .+...   +-.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~--------~~~-------~~~~v~gvD~s~~-~------~~~a~~~~~~-~~~~~---~i~   55 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALA--------RLF-------PGARVVGVDISPE-M------LEIARERAAE-EGLSD---RIT   55 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHH--------HHH-------TTSEEEEEESSHH-H------HHHHHHHHHH-TTTTT---TEE
T ss_pred             CCEEEEEcCcCCHHHHHHH--------hcC-------CCCEEEEEeCCHH-H------HHHHHHHHHh-cCCCC---CeE
Confidence            4689999999999999888        433       5789999998554 1      1111111111 11110   113


Q ss_pred             EEeecCCCc-cCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          131 FFTGVPGSF-YGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       131 f~~~vpgSF-y~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      |+.   +++ +..-+++ .+|++++.. ++|++-.                              ..+...+|+.=.+-|
T Consensus        56 ~~~---~d~~~~~~~~~-~~D~v~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~L  101 (112)
T PF12847_consen   56 FVQ---GDAEFDPDFLE-PFDLVICSGFTLHFLLP------------------------------LDERRRVLERIRRLL  101 (112)
T ss_dssp             EEE---SCCHGGTTTSS-CEEEEEECSGSGGGCCH------------------------------HHHHHHHHHHHHHHE
T ss_pred             EEE---CccccCcccCC-CCCEEEECCCccccccc------------------------------hhHHHHHHHHHHHhc
Confidence            433   677 3333333 499999988 6665311                              045555666667888


Q ss_pred             ccCCeEEEEe
Q 024331          209 VAEGRMVLTF  218 (269)
Q Consensus       209 ~pGG~lv~~~  218 (269)
                      +|||++++..
T Consensus       102 ~pgG~lvi~~  111 (112)
T PF12847_consen  102 KPGGRLVINT  111 (112)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            8999999974

...

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.43  E-value=4.2e-07  Score=81.69  Aligned_cols=128  Identities=23%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      --.++|+|||-|+-+-.+...-|                =+++..|....          +.+. .+. ..+     +.+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~----------M~~s-~~~-~qd-----p~i  119 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYD----------MIKS-CRD-AQD-----PSI  119 (325)
T ss_pred             CcceeecccchhhhhHHHHhcch----------------hheeeeecchH----------HHHH-hhc-cCC-----Cce
Confidence            34789999999987766652222                34455565543          3322 211 111     233


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      -+.-.-|+=....|-+||+|+++||.++||..++|....                  .+               ..-|||
T Consensus       120 ~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~------------------~c---------------k~~lKP  166 (325)
T KOG2940|consen  120 ETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMI------------------QC---------------KLALKP  166 (325)
T ss_pred             EEEEEecchhcccccccchhhhhhhhhhhhhccCchHHH------------------HH---------------HHhcCC
Confidence            333344777888899999999999999999999996432                  11               345679


Q ss_pred             CCeEEEEecccCCCCCCChhhhHHHHH-HHHHHHHHHHccCcccc
Q 024331          211 EGRMVLTFLGRKSQDPSSKECCYIWEL-LATALNNMVSEVTKSFL  254 (269)
Q Consensus       211 GG~lv~~~~g~~~~~~~~~~~~~~~~~-l~~~l~~mv~eG~i~~~  254 (269)
                      .|.++-+++|-++          +|++ ++--|.+|+.+|=|+..
T Consensus       167 Dg~FiasmlggdT----------LyELR~slqLAelER~GGiSph  201 (325)
T KOG2940|consen  167 DGLFIASMLGGDT----------LYELRCSLQLAELEREGGISPH  201 (325)
T ss_pred             CccchhHHhcccc----------HHHHHHHhhHHHHHhccCCCCC
Confidence            9999999998764          2232 45568889999877653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.43  E-value=1.4e-06  Score=76.45  Aligned_cols=106  Identities=18%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF  132 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~  132 (269)
                      +|+|+|||+|..+..++        +++       |..+|+..|+..+ .      +........ +.|..    ..  +
T Consensus         2 ~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gid~s~~-~------~~~a~~~~~-~~gl~----~~--i   52 (224)
T smart00828        2 RVLDFGCGYGSDLIDLA--------ERH-------PHLQLHGYTISPE-Q------AEVGRERIR-ALGLQ----GR--I   52 (224)
T ss_pred             eEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEECCHH-H------HHHHHHHHH-hcCCC----cc--e
Confidence            69999999999877665        443       4578889998443 1      000111111 11211    11  1


Q ss_pred             eecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 024331          133 TGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG  212 (269)
Q Consensus       133 ~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  212 (269)
                      ..+.+++...++| +++|+++|..++|+..+                                 +..+|+.=++-|+|||
T Consensus        53 ~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG   98 (224)
T smart00828       53 RIFYRDSAKDPFP-DTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLKDGG   98 (224)
T ss_pred             EEEecccccCCCC-CCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcCCCC
Confidence            2223666555565 48999999999998522                                 2233333356777999


Q ss_pred             eEEEEeccc
Q 024331          213 RMVLTFLGR  221 (269)
Q Consensus       213 ~lv~~~~g~  221 (269)
                      +++++.+..
T Consensus        99 ~l~i~~~~~  107 (224)
T smart00828       99 HLVLADFIA  107 (224)
T ss_pred             EEEEEEccc
Confidence            999987643

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.43  E-value=7.1e-07  Score=82.09  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=64.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +-+|+|+|||+|.+++.++        ++         ..+|+..|.... .      +....+... ..+        +
T Consensus       121 ~~~vLDlGcG~G~~~~~la--------~~---------g~~V~avD~s~~-a------i~~~~~~~~-~~~--------l  167 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLA--------LL---------GFDVTAVDINQQ-S------LENLQEIAE-KEN--------L  167 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHH--------HC---------CCEEEEEECCHH-H------HHHHHHHHH-HcC--------C
Confidence            4599999999999998876        32         268899988665 0      111111111 111        1


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      -+..+.+++....+ ++++|+++|+.++|+++.                               .++..+|+.=.+-|+|
T Consensus       168 ~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~Lkp  215 (287)
T PRK12335        168 NIRTGLYDINSASI-QEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNP  215 (287)
T ss_pred             ceEEEEechhcccc-cCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCC
Confidence            12223345544333 789999999999998632                               2344555555677889


Q ss_pred             CCeEEEEe
Q 024331          211 EGRMVLTF  218 (269)
Q Consensus       211 GG~lv~~~  218 (269)
                      ||++++..
T Consensus       216 gG~~l~v~  223 (287)
T PRK12335        216 GGYNLIVC  223 (287)
T ss_pred             CcEEEEEE
Confidence            99977654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.37  E-value=8.8e-07  Score=83.17  Aligned_cols=108  Identities=21%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.++        +..       + -+|+..|.. ..+..-++..       .+..+..    .++
T Consensus       123 g~~VLDIGCG~G~~~~~la--------~~g-------~-~~V~GiD~S-~~~l~q~~a~-------~~~~~~~----~~i  174 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRML--------GAG-------A-KLVVGIDPS-QLFLCQFEAV-------RKLLGND----QRA  174 (322)
T ss_pred             CCEEEEeccCCcHHHHHHH--------HcC-------C-CEEEEEcCC-HHHHHHHHHH-------HHhcCCC----CCe
Confidence            4699999999999988666        431       2 258999944 3331111111       1111111    122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                        .-+++++....+ ++++|+++|..+||+...                                 ...+|+.=++.|+|
T Consensus       175 --~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~d---------------------------------p~~~L~~l~~~Lkp  218 (322)
T PRK15068        175 --HLLPLGIEQLPA-LKAFDTVFSMGVLYHRRS---------------------------------PLDHLKQLKDQLVP  218 (322)
T ss_pred             --EEEeCCHHHCCC-cCCcCEEEECChhhccCC---------------------------------HHHHHHHHHHhcCC
Confidence              224578877777 789999999888887422                                 11223333667889


Q ss_pred             CCeEEEEecccC
Q 024331          211 EGRMVLTFLGRK  222 (269)
Q Consensus       211 GG~lv~~~~g~~  222 (269)
                      ||.+++..+..+
T Consensus       219 GG~lvl~~~~i~  230 (322)
T PRK15068        219 GGELVLETLVID  230 (322)
T ss_pred             CcEEEEEEEEec
Confidence            999999876554

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.36  E-value=8.5e-07  Score=72.67  Aligned_cols=100  Identities=25%  Similarity=0.267  Sum_probs=64.5

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .++..+|+|+|||+|.++..+.        +.        + .+++..|....          +...   .         
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~~----------~~~~---~---------   60 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISPQ----------MIEK---R---------   60 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSHH----------HHHH---T---------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCHH----------HHhh---h---------
Confidence            3457899999999997755443        32        2 48889887654          1110   0         


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      ...+...   .-....+|++++|+++|+.+|||+..                                 +..+|+.=.+-
T Consensus        61 ~~~~~~~---~~~~~~~~~~~fD~i~~~~~l~~~~d---------------------------------~~~~l~~l~~~  104 (161)
T PF13489_consen   61 NVVFDNF---DAQDPPFPDGSFDLIICNDVLEHLPD---------------------------------PEEFLKELSRL  104 (161)
T ss_dssp             TSEEEEE---ECHTHHCHSSSEEEEEEESSGGGSSH---------------------------------HHHHHHHHHHC
T ss_pred             hhhhhhh---hhhhhhccccchhhHhhHHHHhhccc---------------------------------HHHHHHHHHHh
Confidence            0112110   00245568999999999999999753                                 12222222566


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||+++++.+.+.
T Consensus       105 LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen  105 LKPGGYLVISDPNRD  119 (161)
T ss_dssp             EEEEEEEEEEEEBTT
T ss_pred             cCCCCEEEEEEcCCc
Confidence            779999999999864

...

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.34  E-value=1.5e-06  Score=76.13  Aligned_cols=159  Identities=14%  Similarity=0.090  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchH
Q 024331           24 VQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFN  103 (269)
Q Consensus        24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFn  103 (269)
                      +|+.+...-.|++-........-......+|+|+|||+|..+..++        +++       |..+|+..|.... . 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la--------~~~-------p~~~v~gVD~s~~-~-   76 (202)
T PRK00121         14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMA--------KAN-------PDINFIGIEVHEP-G-   76 (202)
T ss_pred             chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHH--------HHC-------CCccEEEEEechH-H-
Confidence            3445555555555322222111112246799999999999988776        442       5578999998765 1 


Q ss_pred             HHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCc-cC--CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCC
Q 024331          104 TIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSF-YG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST  180 (269)
Q Consensus       104 tLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSF-y~--~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~  180 (269)
                           +........ ..+  .   .++.+  +-+++ ..  +.++++++|.++++++.+|....-.     +..+     
T Consensus        77 -----i~~a~~~~~-~~~--~---~~v~~--~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-----~~~~-----  133 (202)
T PRK00121         77 -----VGKALKKIE-EEG--L---TNLRL--LCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-----KRRL-----  133 (202)
T ss_pred             -----HHHHHHHHH-HcC--C---CCEEE--EecCHHHHHHHHcCccccceEEEECCCCCCCcccc-----cccc-----
Confidence                 111111111 111  1   22222  23666 33  3488999999999888888543110     0000     


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCc
Q 024331          181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTK  251 (269)
Q Consensus       181 s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i  251 (269)
                                     +...||+.=++-|+|||.++++....              +.+...+..|...|+-
T Consensus       134 ---------------~~~~~l~~i~~~LkpgG~l~i~~~~~--------------~~~~~~~~~~~~~g~~  175 (202)
T PRK00121        134 ---------------VQPEFLALYARKLKPGGEIHFATDWE--------------GYAEYMLEVLSAEGGF  175 (202)
T ss_pred             ---------------CCHHHHHHHHHHcCCCCEEEEEcCCH--------------HHHHHHHHHHHhCccc
Confidence                           11122222255666999999865211              2455566777777753

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.33  E-value=3.1e-06  Score=70.12  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~  126 (269)
                      +..+|+|+|||+|..+..++        ++.      .|..+++..|+...          +. +.+++   +.+..   
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~--------~~~------~~~~~i~gvD~s~~----------~i-~~a~~~~~~~~~~---   54 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLA--------KEL------NPGAKIIGVDISEE----------MI-EYAKKRAKELGLD---   54 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHH--------HHS------TTTSEEEEEESSHH----------HH-HHHHHHHHHTTST---
T ss_pred             CCCEEEEecCcCcHHHHHHH--------Hhc------CCCCEEEEEECcHH----------HH-HHhhccccccccc---
Confidence            46899999999999988777        331      25688999998776          22 11222   22211   


Q ss_pred             CCceEEeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          127 AGQCFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                       .-.|+.   +++.+..  ++ +.+|++++..++||....                                 ..+|+.=
T Consensus        55 -ni~~~~---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~---------------------------------~~~l~~~   96 (152)
T PF13847_consen   55 -NIEFIQ---GDIEDLPQELE-EKFDIIISNGVLHHFPDP---------------------------------EKVLKNI   96 (152)
T ss_dssp             -TEEEEE---SBTTCGCGCSS-TTEEEEEEESTGGGTSHH---------------------------------HHHHHHH
T ss_pred             -ccceEE---eehhccccccC-CCeeEEEEcCchhhccCH---------------------------------HHHHHHH
Confidence             124444   7777733  55 899999999999885331                                 1122222


Q ss_pred             hhhhccCCeEEEEecc
Q 024331          205 SEELVAEGRMVLTFLG  220 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g  220 (269)
                      .+-|++||.++++...
T Consensus        97 ~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   97 IRLLKPGGILIISDPN  112 (152)
T ss_dssp             HHHEEEEEEEEEEEEE
T ss_pred             HHHcCCCcEEEEEECC
Confidence            4556699999998877

...

>PRK06202 hypothetical protein; Provisional

Probab=98.33  E-value=9.5e-06  Score=71.95  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .++.+|+|+|||+|..+..++        +..++   ..|..+|+..|+..+          +.. ..+++... .   +
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~--------~~~~~---~g~~~~v~gvD~s~~----------~l~-~a~~~~~~-~---~  112 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLA--------RWARR---DGLRLEVTAIDPDPR----------AVA-FARANPRR-P---G  112 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHH--------HHHHh---CCCCcEEEEEcCCHH----------HHH-HHHhcccc-C---C
Confidence            356899999999999877655        22211   125579999998775          321 12222111 0   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      --+..+   +.....++++++|+++|+.+|||+.+
T Consensus       113 ~~~~~~---~~~~l~~~~~~fD~V~~~~~lhh~~d  144 (232)
T PRK06202        113 VTFRQA---VSDELVAEGERFDVVTSNHFLHHLDD  144 (232)
T ss_pred             CeEEEE---ecccccccCCCccEEEECCeeecCCh
Confidence            122221   22233457899999999999999754

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.30  E-value=2.2e-06  Score=77.74  Aligned_cols=82  Identities=18%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ..-+|+|+|||+|..++.++        +..      .+..+|+..|...+          ++ +..++.. ..++   .
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a--------~~~------g~~~~v~gvD~s~~----------~l-~~A~~~~~~~g~---~  128 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAA--------RRV------GPTGKVIGVDMTPE----------ML-AKARANARKAGY---T  128 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEECCCHH----------HH-HHHHHHHHHcCC---C
Confidence            45799999999998776554        332      14468999997654          21 1122111 1111   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      ++  .-+.+++....+|++++|+++|...+||.
T Consensus       129 ~v--~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~  159 (272)
T PRK11873        129 NV--EFRLGEIEALPVADNSVDVIISNCVINLS  159 (272)
T ss_pred             CE--EEEEcchhhCCCCCCceeEEEEcCcccCC
Confidence            11  22347888888999999999999999984

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.29  E-value=8.7e-06  Score=74.34  Aligned_cols=97  Identities=16%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-C----CC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-G----SA  123 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~----~~  123 (269)
                      ..+++|+|+|||||.-+-.++-.+.+....      ...+.++|+..|+...          ++. ..++.. .    .+
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~------~~~~~~~I~g~Dis~~----------~L~-~Ar~~~y~~~~~~~  160 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK------AREPDVKILATDIDLK----------ALE-KARAGIYPERELED  160 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhh------cCCCCeEEEEEECCHH----------HHH-HHHcCCCCHHHHhc
Confidence            356999999999997544333222222211      1124689999998775          221 111100 0    00


Q ss_pred             CC--CCCceE----------------EeecCCCccCCCCCCCceeeEeccccccccc
Q 024331          124 SG--AAGQCF----------------FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS  162 (269)
Q Consensus       124 ~~--~~~~~f----------------~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS  162 (269)
                      .+  ....+|                |.-..++.....+|.+++|+++|.+.|||++
T Consensus       161 ~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~  217 (264)
T smart00138      161 LPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD  217 (264)
T ss_pred             CCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence            00  000111                1112355566667899999999999999964

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.27  E-value=9.2e-06  Score=70.18  Aligned_cols=131  Identities=17%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.+.        ...       |..+|+..|...+        .-.......++.+  .   .++
T Consensus        43 ~~~vLDiGcGtG~~s~~la--------~~~-------~~~~V~~iD~s~~--------~~~~a~~~~~~~~--~---~~i   94 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLA--------IAR-------PELKLTLLESNHK--------KVAFLREVKAELG--L---NNV   94 (181)
T ss_pred             CCeEEEecCCCCccHHHHH--------HHC-------CCCeEEEEeCcHH--------HHHHHHHHHHHhC--C---CCe
Confidence            5799999999999988776        332       4578999998776        1111111111122  1   122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                        .-+.++..+ +.+.+++|+++|.. +|++                                    ..+++.=.+-|+|
T Consensus        95 --~~i~~d~~~-~~~~~~fD~I~s~~-~~~~------------------------------------~~~~~~~~~~Lkp  134 (181)
T TIGR00138        95 --EIVNGRAED-FQHEEQFDVITSRA-LASL------------------------------------NVLLELTLNLLKV  134 (181)
T ss_pred             --EEEecchhh-ccccCCccEEEehh-hhCH------------------------------------HHHHHHHHHhcCC
Confidence              223466655 34578999999843 2221                                    0111111344779


Q ss_pred             CCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecc
Q 024331          211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQL  262 (269)
Q Consensus       211 GG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP  262 (269)
                      ||++++.. +..     .      ..-+....+.|..+|+ ...+.++|.+|
T Consensus       135 gG~lvi~~-~~~-----~------~~~~~~~~e~~~~~~~-~~~~~~~~~~~  173 (181)
T TIGR00138       135 GGYFLAYK-GKK-----Y------LDEIEEAKRKCQVLGV-EPLEVPPLTGP  173 (181)
T ss_pred             CCEEEEEc-CCC-----c------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence            99999763 221     1      1235566688888995 55566888888

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.26  E-value=3e-06  Score=80.27  Aligned_cols=79  Identities=18%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +..       +..+|+..|+..+          ++. ..+++...     .+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La--------~~~-------~~~~VtgVD~S~~----------mL~-~A~~k~~~-----~~  161 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPH----------QLA-KAKQKEPL-----KE  161 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHH--------HHC-------CCCEEEEEECCHH----------HHH-HHHHhhhc-----cC
Confidence            35799999999999887666        432       3368999998655          221 12211110     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      +  ..+.++.....|+++++|+++++.++|++
T Consensus       162 i--~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        162 C--KIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             C--eEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            1  12458888888999999999999999974

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.26  E-value=3.6e-05  Score=66.58  Aligned_cols=108  Identities=17%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +.+      ++..+++..|....          . .+..+.+.....   +-
T Consensus        39 ~~~~vldiG~G~G~~~~~~~--------~~~------~~~~~~~~iD~~~~----------~-~~~~~~~~~~~~---~i   90 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELA--------KSA------PDRGKVTGVDFSSE----------M-LEVAKKKSELPL---NI   90 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHH--------Hhc------CCCceEEEEECCHH----------H-HHHHHHHhccCC---Cc
Confidence            46899999999999887766        432      12268899987443          1 111111111100   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .++.   +++...+++++++|+++++..+|+..+                                 ...+|+.-.+.|+
T Consensus        91 ~~~~---~d~~~~~~~~~~~D~i~~~~~~~~~~~---------------------------------~~~~l~~~~~~L~  134 (223)
T TIGR01934        91 EFIQ---ADAEALPFEDNSFDAVTIAFGLRNVTD---------------------------------IQKALREMYRVLK  134 (223)
T ss_pred             eEEe---cchhcCCCCCCcEEEEEEeeeeCCccc---------------------------------HHHHHHHHHHHcC
Confidence            2333   777787888999999999999887422                                 1234555567778


Q ss_pred             cCCeEEEEeccc
Q 024331          210 AEGRMVLTFLGR  221 (269)
Q Consensus       210 pGG~lv~~~~g~  221 (269)
                      |||++++.....
T Consensus       135 ~gG~l~~~~~~~  146 (223)
T TIGR01934       135 PGGRLVILEFSK  146 (223)
T ss_pred             CCcEEEEEEecC
Confidence            999999876543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03438 probable methyltransferase

Probab=98.25  E-value=5.2e-06  Score=77.03  Aligned_cols=129  Identities=16%  Similarity=0.172  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331           34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ  113 (269)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~  113 (269)
                      .+|+....++.... +...+|+|+|||+|..|..++        +...      ...+++..|+...          ++.
T Consensus        48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll--------~~l~------~~~~~~~iDiS~~----------mL~  102 (301)
T TIGR03438        48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLL--------DALR------QPARYVPIDISAD----------ALK  102 (301)
T ss_pred             HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHH--------Hhhc------cCCeEEEEECCHH----------HHH
Confidence            34444444443222 235789999999999999888        4321      1378999999886          332


Q ss_pred             HHHHHhcCCCCCCCCceEEeecCCCccCC-CCCCC----ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHH
Q 024331          114 KILRKQLGSASGAAGQCFFTGVPGSFYGR-LFPRN----SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA  188 (269)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~-lfP~~----Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~a  188 (269)
                      ...++ ....+   +.+-+.++-|+|... -+|..    ...++++..++++++.                         
T Consensus       103 ~a~~~-l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~-------------------------  153 (301)
T TIGR03438       103 ESAAA-LAADY---PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP-------------------------  153 (301)
T ss_pred             HHHHH-HHhhC---CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH-------------------------
Confidence            21111 10001   234455566898863 35544    3556777677777531                         


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          189 YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       189 y~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                            .|..+||+.=++-|+|||+|++.+-...
T Consensus       154 ------~e~~~~L~~i~~~L~pgG~~lig~d~~~  181 (301)
T TIGR03438       154 ------EEAVAFLRRIRQLLGPGGGLLIGVDLVK  181 (301)
T ss_pred             ------HHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence                  2233444444556779999999775544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.24  E-value=6.5e-07  Score=68.62  Aligned_cols=76  Identities=17%  Similarity=0.141  Sum_probs=38.6

Q ss_pred             EeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHH---HHHHHHhcCCCCCCCCceE
Q 024331           55 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF---QKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        55 aD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~---~~~~~~~~~~~~~~~~~~f  131 (269)
                      +|+|||+|..+..++        +.+       |..+++..|....          ++   ++++......     ....
T Consensus         1 LdiGcG~G~~~~~l~--------~~~-------~~~~~~~~D~s~~----------~l~~a~~~~~~~~~~-----~~~~   50 (99)
T PF08242_consen    1 LDIGCGTGRLLRALL--------EEL-------PDARYTGVDISPS----------MLERARERLAELGND-----NFER   50 (99)
T ss_dssp             -EESTTTS-TTTTHH--------HHC--------EEEEEEEESSSS----------TTSTTCCCHHHCT--------EEE
T ss_pred             CEeCccChHHHHHHH--------HhC-------CCCEEEEEECCHH----------HHHHHHHHhhhcCCc-----ceeE
Confidence            699999999999888        553       6799999999887          32   1111111101     1123


Q ss_pred             EeecCCCccCCCCCCCceeeEecccccccc
Q 024331          132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      +.....+..... +.+++|+++++..+||+
T Consensus        51 ~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen   51 LRFDVLDLFDYD-PPESFDLVVASNVLHHL   79 (99)
T ss_dssp             EE--SSS---CC-C----SEEEEE-TTS--
T ss_pred             EEeecCChhhcc-cccccceehhhhhHhhh
Confidence            333333333322 22799999999999997

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.23  E-value=2.2e-06  Score=75.12  Aligned_cols=79  Identities=23%  Similarity=0.353  Sum_probs=49.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ++-+++|+|||.|+||+.++        ++         -++|..-|....-...+       .+ +..+.+  +    +
T Consensus        30 ~~g~~LDlgcG~GRNalyLA--------~~---------G~~VtAvD~s~~al~~l-------~~-~a~~~~--l----~   78 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLA--------SQ---------GFDVTAVDISPVALEKL-------QR-LAEEEG--L----D   78 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHH--------HT---------T-EEEEEESSHHHHHHH-------HH-HHHHTT-------T
T ss_pred             CCCcEEEcCCCCcHHHHHHH--------HC---------CCeEEEEECCHHHHHHH-------HH-HHhhcC--c----e
Confidence            46899999999999999998        54         38999999877622111       11 111111  1    2


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS  162 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS  162 (269)
                        +...-.++...-+| ..+|+++|...+|.|.
T Consensus        79 --i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~  108 (192)
T PF03848_consen   79 --IRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ  108 (192)
T ss_dssp             --EEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred             --eEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence              33333566555565 6899999999999875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.23  E-value=8.5e-06  Score=72.88  Aligned_cols=139  Identities=21%  Similarity=0.294  Sum_probs=93.0

Q ss_pred             CchHHHhcHH---HHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcce
Q 024331           15 GTSYASNSLV---QEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQ   91 (269)
Q Consensus        15 ~~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~q   91 (269)
                      +.-|++||.+   |.+..++++.+|..        ..+++--|+|+|||||-.+-.+-                 .+.-+
T Consensus        20 A~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL~-----------------~~Gh~   74 (270)
T KOG1541|consen   20 APKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVLS-----------------DSGHQ   74 (270)
T ss_pred             hhhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchheec-----------------cCCce
Confidence            3468889874   66666666555442        22358899999999996643222                 24578


Q ss_pred             EEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCC
Q 024331           92 VFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESN  171 (269)
Q Consensus        92 v~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~n  171 (269)
                      .+..|..--          |+......+..      +.+-.+-++   .+.+|+++++|=++|-.|+|||=...+...  
T Consensus        75 wiGvDiSps----------ML~~a~~~e~e------gdlil~DMG---~GlpfrpGtFDg~ISISAvQWLcnA~~s~~--  133 (270)
T KOG1541|consen   75 WIGVDISPS----------MLEQAVERELE------GDLILCDMG---EGLPFRPGTFDGVISISAVQWLCNADKSLH--  133 (270)
T ss_pred             EEeecCCHH----------HHHHHHHhhhh------cCeeeeecC---CCCCCCCCccceEEEeeeeeeecccCcccc--
Confidence            888887654          55433333221      122333233   789999999999999999999866544322  


Q ss_pred             CcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEec
Q 024331          172 KGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL  219 (269)
Q Consensus       172 kg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~  219 (269)
                                .          =++-+.+|+..=..-|++|++-|+.+-
T Consensus       134 ----------~----------P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  134 ----------V----------PKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             ----------C----------hHHHHHHHhhhhhhhhccCceeEEEec
Confidence                      1          135677788777888999999999874

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.21  E-value=1.2e-06  Score=67.70  Aligned_cols=81  Identities=23%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             EEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCceEE
Q 024331           54 IADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQCFF  132 (269)
Q Consensus        54 IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~f~  132 (269)
                      |+|+|||+|..+..+.        +.+    +..|+.+++..|+..+          ++. ..+++. ..++   .--|+
T Consensus         1 ILDlgcG~G~~~~~l~--------~~~----~~~~~~~~~gvD~s~~----------~l~-~~~~~~~~~~~---~~~~~   54 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALA--------RRF----DAGPSSRVIGVDISPE----------MLE-LAKKRFSEDGP---KVRFV   54 (101)
T ss_dssp             -EEET-TTSHHHHHHH--------HHS---------SEEEEEES-HH----------HHH-HHHHHSHHTTT---TSEEE
T ss_pred             CEEeecCCcHHHHHHH--------HHh----hhcccceEEEEECCHH----------HHH-HHHHhchhcCC---ceEEE
Confidence            7999999999988877        432    1125689999998776          221 122211 0111   12344


Q ss_pred             eecCCCccCCCCCCCceeeEecccc-cccccc
Q 024331          133 TGVPGSFYGRLFPRNSVHLFHSSYS-LQWLSQ  163 (269)
Q Consensus       133 ~~vpgSFy~~lfP~~Svd~~~Ss~a-lHWLS~  163 (269)
                      .   +++-+..++++++|+++++.+ +|++++
T Consensus        55 ~---~D~~~l~~~~~~~D~v~~~~~~~~~~~~   83 (101)
T PF13649_consen   55 Q---ADARDLPFSDGKFDLVVCSGLSLHHLSP   83 (101)
T ss_dssp             E---SCTTCHHHHSSSEEEEEE-TTGGGGSSH
T ss_pred             E---CCHhHCcccCCCeeEEEEcCCccCCCCH
Confidence            4   777777788999999999665 887543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.20  E-value=2.2e-06  Score=76.40  Aligned_cols=105  Identities=21%  Similarity=0.331  Sum_probs=72.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      .+.+|+|+|||+|..|-+++        +|+       |..+|..-|-..-          |+. +..++. .     .-
T Consensus        30 ~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS~~----------Mla-~Aa~rl-p-----~~   77 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSSPA----------MLA-KAAQRL-P-----DA   77 (257)
T ss_pred             ccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCCHH----------HHH-HHHHhC-C-----CC
Confidence            47899999999999999888        887       8899999996554          442 333321 1     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      -|.-   ++ -...-|+...|++||+-+||||.+-|..+.                          .|-.       +|.
T Consensus        78 ~f~~---aD-l~~w~p~~~~dllfaNAvlqWlpdH~~ll~--------------------------rL~~-------~L~  120 (257)
T COG4106          78 TFEE---AD-LRTWKPEQPTDLLFANAVLQWLPDHPELLP--------------------------RLVS-------QLA  120 (257)
T ss_pred             ceec---cc-HhhcCCCCccchhhhhhhhhhccccHHHHH--------------------------HHHH-------hhC
Confidence            2222   11 123458999999999999999876554322                          1222       456


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||.|.+.++..-+
T Consensus       121 Pgg~LAVQmPdN~d  134 (257)
T COG4106         121 PGGVLAVQMPDNLD  134 (257)
T ss_pred             CCceEEEECCCccC
Confidence            99999999987654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.19  E-value=8.8e-06  Score=71.14  Aligned_cols=109  Identities=21%  Similarity=0.286  Sum_probs=69.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC-CCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS-ASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~-~~~~~~~  129 (269)
                      ..+|+|+|||+|..+..++        +.+      ++..+++..|+..+          .. +..+++... +.  ..+
T Consensus        52 ~~~vldiG~G~G~~~~~l~--------~~~------~~~~~v~~~D~s~~----------~~-~~a~~~~~~~~~--~~~  104 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALA--------KAV------GKTGEVVGLDFSEG----------ML-AVGREKLRDLGL--SGN  104 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHH--------HHc------CCCCeEEEEeCCHH----------HH-HHHHHhhccccc--ccC
Confidence            4799999999999888766        432      12588999998665          11 111111100 00  012


Q ss_pred             -eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 -CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 -~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                       .|+   -+++....++++++|++++++.+|+.++.                                 ..+|+.-.+-|
T Consensus       105 ~~~~---~~d~~~~~~~~~~~D~I~~~~~l~~~~~~---------------------------------~~~l~~~~~~L  148 (239)
T PRK00216        105 VEFV---QGDAEALPFPDNSFDAVTIAFGLRNVPDI---------------------------------DKALREMYRVL  148 (239)
T ss_pred             eEEE---ecccccCCCCCCCccEEEEecccccCCCH---------------------------------HHHHHHHHHhc
Confidence             233   37788877888999999999999885431                                 12333335567


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||.+++......
T Consensus       149 ~~gG~li~~~~~~~  162 (239)
T PRK00216        149 KPGGRLVILEFSKP  162 (239)
T ss_pred             cCCcEEEEEEecCC
Confidence            79999988766543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.18  E-value=2.3e-05  Score=72.52  Aligned_cols=112  Identities=15%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..++.++        +++       |..+++..|+|.-        +....+... +.+.      
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~-~~gl------  197 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAML--------KHF-------PELDSTILNLPGA--------IDLVNENAA-EKGV------  197 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHH--------HHC-------CCCEEEEEecHHH--------HHHHHHHHH-hCCc------
Confidence            345799999999998887777        554       6788999998631        221111111 1111      


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .-.+..++++|+...+|+  .|+++.+..+|-.+.                               .+...+|+.=.+-|
T Consensus       198 ~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~-------------------------------~~~~~il~~~~~~L  244 (306)
T TIGR02716       198 ADRMRGIAVDIYKESYPE--ADAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAM  244 (306)
T ss_pred             cceEEEEecCccCCCCCC--CCEEEeEhhhhcCCh-------------------------------HHHHHHHHHHHHhc
Confidence            112445669999877776  499988888873111                               11122233235667


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++.-+..++
T Consensus       245 ~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       245 RSGGRLLILDMVIDD  259 (306)
T ss_pred             CCCCEEEEEEeccCC
Confidence            899999999765543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.17  E-value=7.5e-06  Score=74.56  Aligned_cols=120  Identities=13%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.++++|++||||-.++.+++.+-.+-.         ..+-+|+-.|+..+          ++....+++...++.. .+
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~---------~~~~~V~v~Dinp~----------mL~vgkqRa~~~~l~~-~~  159 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFG---------DRESKVTVLDINPH----------MLAVGKQRAKKRPLKA-SS  159 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccC---------CCCceEEEEeCCHH----------HHHHHHHHHhhcCCCc-CC
Confidence            4689999999999999987733322211         23467888887665          5543222221111200 11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      + +.-+.|+....+||++|+|...+++.+--+-+++..                 ..|||                |.||
T Consensus       160 ~-~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~-----------------l~EAY----------------RVLK  205 (296)
T KOG1540|consen  160 R-VEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA-----------------LREAY----------------RVLK  205 (296)
T ss_pred             c-eEEEeCCcccCCCCCCcceeEEEecceecCCCHHHH-----------------HHHHH----------------HhcC
Confidence            1 222559999999999999999999988866554443                 23455                7899


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++.+..+..-+
T Consensus       206 pGGrf~cLeFskv~  219 (296)
T KOG1540|consen  206 PGGRFSCLEFSKVE  219 (296)
T ss_pred             CCcEEEEEEccccc
Confidence            99999998887754

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.14  E-value=1.3e-05  Score=70.82  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|.-+..++        ++.      .+.-+|+..|+..  .+    .++                 +-
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~--------~~~------~~~~~V~aVDi~~--~~----~~~-----------------~v   93 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAV--------TQI------GDKGRVIACDILP--MD----PIV-----------------GV   93 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHH--------HHc------CCCceEEEEeccc--cc----CCC-----------------Cc
Confidence            35699999999999887776        442      1346899999854  10    000                 11


Q ss_pred             eEEeecCCCccCC--------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331          130 CFFTGVPGSFYGR--------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL  201 (269)
Q Consensus       130 ~f~~~vpgSFy~~--------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL  201 (269)
                      .++.   +++...        .++++++|+++|..+.||... |.  .            ..+..       .......|
T Consensus        94 ~~i~---~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~------------d~~~~-------~~~~~~~L  148 (209)
T PRK11188         94 DFLQ---GDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--V------------DIPRA-------MYLVELAL  148 (209)
T ss_pred             EEEe---cCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--H------------HHHHH-------HHHHHHHH
Confidence            2333   677764        378899999999999999321 10  0            00000       01123444


Q ss_pred             hhhhhhhccCCeEEEEeccc
Q 024331          202 KCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       202 ~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      +.=.+-|+|||.+++..+..
T Consensus       149 ~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        149 DMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             HHHHHHcCCCCEEEEEEecC
Confidence            44456677999999976544

>TIGR00452 methyltransferase, putative

Probab=98.13  E-value=8.2e-06  Score=76.57  Aligned_cols=108  Identities=21%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..++        ...       + -.|+..|.... |-.-|+.       .++..+..    ..+
T Consensus       122 g~~VLDvGCG~G~~~~~~~--------~~g-------~-~~v~GiDpS~~-ml~q~~~-------~~~~~~~~----~~v  173 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRML--------GHG-------A-KSLVGIDPTVL-FLCQFEA-------VRKLLDND----KRA  173 (314)
T ss_pred             CCEEEEeccCCcHHHHHHH--------HcC-------C-CEEEEEcCCHH-HHHHHHH-------HHHHhccC----CCe
Confidence            4799999999999876555        321       2 26788885442 2111111       11111110    122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      .+  .++++....+ .+++|+++|..+|||+..                  +..+.++.               ++-|+|
T Consensus       174 ~~--~~~~ie~lp~-~~~FD~V~s~gvL~H~~d------------------p~~~L~el---------------~r~Lkp  217 (314)
T TIGR00452       174 IL--EPLGIEQLHE-LYAFDTVFSMGVLYHRKS------------------PLEHLKQL---------------KHQLVI  217 (314)
T ss_pred             EE--EECCHHHCCC-CCCcCEEEEcchhhccCC------------------HHHHHHHH---------------HHhcCC
Confidence            21  3456665554 358999999999998522                  11122222               567779


Q ss_pred             CCeEEEEecccC
Q 024331          211 EGRMVLTFLGRK  222 (269)
Q Consensus       211 GG~lv~~~~g~~  222 (269)
                      ||.|++..+..+
T Consensus       218 GG~Lvletl~i~  229 (314)
T TIGR00452       218 KGELVLETLVID  229 (314)
T ss_pred             CCEEEEEEEEec
Confidence            999999876543

Known examples to date are restricted to the proteobacteria.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.09  E-value=1.1e-05  Score=70.11  Aligned_cols=81  Identities=17%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..++.++        +++       |+.+|+..|+... .      +........+ .+  .   .++
T Consensus        17 ~~~ilDiGcG~G~~~~~la--------~~~-------p~~~v~gvD~~~~-~------l~~a~~~~~~-~~--l---~ni   68 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMA--------KQN-------PDKNFLGIEIHTP-I------VLAANNKANK-LG--L---KNL   68 (194)
T ss_pred             CceEEEeCCCccHHHHHHH--------HhC-------CCCCEEEEEeeHH-H------HHHHHHHHHH-hC--C---CCE
Confidence            4599999999999988777        543       6789999998654 0      1111111111 11  1   233


Q ss_pred             EEeecCCCccC---CCCCCCceeeEecccccccc
Q 024331          131 FFTGVPGSFYG---RLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       131 f~~~vpgSFy~---~lfP~~Svd~~~Ss~alHWL  161 (269)
                      .  .+-++...   ..+|++++|.++..+..+|.
T Consensus        69 ~--~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~  100 (194)
T TIGR00091        69 H--VLCGDANELLDKFFPDGSLSKVFLNFPDPWP  100 (194)
T ss_pred             E--EEccCHHHHHHhhCCCCceeEEEEECCCcCC
Confidence            2  23366653   34788899999999998894

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PTZ00146 fibrillarin; Provisional

Probab=98.05  E-value=0.00013  Score=67.94  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=76.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..|..++        +..      .++=.||..|+...       .+..+......+        .+
T Consensus       132 pG~~VLDLGaG~G~~t~~lA--------diV------G~~G~VyAVD~s~r-------~~~dLl~~ak~r--------~N  182 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVS--------DLV------GPEGVVYAVEFSHR-------SGRDLTNMAKKR--------PN  182 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHH--------HHh------CCCCEEEEEECcHH-------HHHHHHHHhhhc--------CC
Confidence            34699999999999988777        432      13457899886543       111111111111        12


Q ss_pred             e-EEeecCCCccCC---CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 C-FFTGVPGSFYGR---LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~-f~~~vpgSFy~~---lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      + ++.   ++....   .++..++|++++..+..|      .                  .+.    +.....+|     
T Consensus       183 I~~I~---~Da~~p~~y~~~~~~vDvV~~Dva~pd------q------------------~~i----l~~na~r~-----  226 (293)
T PTZ00146        183 IVPII---EDARYPQKYRMLVPMVDVIFADVAQPD------Q------------------ARI----VALNAQYF-----  226 (293)
T ss_pred             CEEEE---CCccChhhhhcccCCCCEEEEeCCCcc------h------------------HHH----HHHHHHHh-----
Confidence            2 222   444221   123458999999665211      0                  001    11223344     


Q ss_pred             hhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccccc
Q 024331          206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYK  265 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~  265 (269)
                        |||||.+++.+-.+..+.....+     +.+++.++.|.++|+   +.++..+|+-|+
T Consensus       227 --LKpGG~~vI~ika~~id~g~~pe-----~~f~~ev~~L~~~GF---~~~e~v~L~Py~  276 (293)
T PTZ00146        227 --LKNGGHFIISIKANCIDSTAKPE-----VVFASEVQKLKKEGL---KPKEQLTLEPFE  276 (293)
T ss_pred             --ccCCCEEEEEEeccccccCCCHH-----HHHHHHHHHHHHcCC---ceEEEEecCCcc
Confidence              55999999976555433222212     234455588888998   555666676554

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.02  E-value=2.8e-05  Score=67.73  Aligned_cols=101  Identities=21%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        .+.       |..+|+..|....        +-.......++.+  .   .+
T Consensus        45 ~g~~VLDiGcGtG~~al~la--------~~~-------~~~~V~giD~s~~--------~l~~A~~~~~~~~--l---~~   96 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLA--------IAR-------PELKVTLVDSLGK--------KIAFLREVAAELG--L---KN   96 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHH--------HHC-------CCCeEEEEeCcHH--------HHHHHHHHHHHcC--C---CC
Confidence            36899999999999888777        332       5678999998665        1111111111112  1   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +.-+.++..+... ++++|+++|..           +                          .++..|++.-++-|+
T Consensus        97 --i~~~~~d~~~~~~-~~~fDlV~~~~-----------~--------------------------~~~~~~l~~~~~~Lk  136 (187)
T PRK00107         97 --VTVVHGRAEEFGQ-EEKFDVVTSRA-----------V--------------------------ASLSDLVELCLPLLK  136 (187)
T ss_pred             --EEEEeccHhhCCC-CCCccEEEEcc-----------c--------------------------cCHHHHHHHHHHhcC
Confidence              3334466655444 77999999831           0                          123456677788899


Q ss_pred             cCCeEEEEe
Q 024331          210 AEGRMVLTF  218 (269)
Q Consensus       210 pGG~lv~~~  218 (269)
                      |||++++..
T Consensus       137 pGG~lv~~~  145 (187)
T PRK00107        137 PGGRFLALK  145 (187)
T ss_pred             CCeEEEEEe
Confidence            999999875

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.00  E-value=1.9e-05  Score=76.11  Aligned_cols=110  Identities=18%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      -.++|+|||+|..++.++        ++       .|+..++..|+-..          +...-.++....+.   .++.
T Consensus       124 p~vLEIGcGsG~~ll~lA--------~~-------~P~~~~iGIEI~~~----------~i~~a~~ka~~~gL---~NV~  175 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQA--------KN-------NPNKLFIGIEIHTP----------SIEQVLKQIELLNL---KNLL  175 (390)
T ss_pred             CeEEEEcCcccHHHHHHH--------Hh-------CCCCCEEEEECCHH----------HHHHHHHHHHHcCC---CcEE
Confidence            489999999999988877        54       27899999998665          22111111111112   3444


Q ss_pred             EeecCCCccC--CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          132 FTGVPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       132 ~~~vpgSFy~--~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +.  .++...  ..||++|+|.++.++...|..+         .+   .+.               -...||+.=++-|+
T Consensus       176 ~i--~~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk---------rH---RRl---------------v~~~fL~e~~RvLk  226 (390)
T PRK14121        176 II--NYDARLLLELLPSNSVEKIFVHFPVPWDKK---------PH---RRV---------------ISEDFLNEALRVLK  226 (390)
T ss_pred             EE--ECCHHHhhhhCCCCceeEEEEeCCCCcccc---------ch---hhc---------------cHHHHHHHHHHHcC
Confidence            33  355432  4689999999999887778211         00   000               01344444477788


Q ss_pred             cCCeEEEEe
Q 024331          210 AEGRMVLTF  218 (269)
Q Consensus       210 pGG~lv~~~  218 (269)
                      |||.+.+.+
T Consensus       227 pGG~l~l~T  235 (390)
T PRK14121        227 PGGTLELRT  235 (390)
T ss_pred             CCcEEEEEE
Confidence            999999965

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.97  E-value=3.8e-05  Score=68.43  Aligned_cols=104  Identities=20%  Similarity=0.381  Sum_probs=75.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+.-+|+|+|+|+|..++.++        +++       |.++++.-|||..        ++...+      .      .
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------~~~~~~------~------~  143 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPEV--------IEQAKE------A------D  143 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HHH--------HCCHHH------T------T
T ss_pred             cCccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHhh--------hhcccc------c------c
Confidence            345689999999999988777        765       7899999999986        332211      1      1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .  +.-+||+|+ ..+|.  .|+++-...|| |                                ..++-..+|+.=++-
T Consensus       144 r--v~~~~gd~f-~~~P~--~D~~~l~~vLh~~--------------------------------~d~~~~~iL~~~~~a  186 (241)
T PF00891_consen  144 R--VEFVPGDFF-DPLPV--ADVYLLRHVLHDW--------------------------------SDEDCVKILRNAAAA  186 (241)
T ss_dssp             T--EEEEES-TT-TCCSS--ESEEEEESSGGGS---------------------------------HHHHHHHHHHHHHH
T ss_pred             c--cccccccHH-hhhcc--ccceeeehhhhhc--------------------------------chHHHHHHHHHHHHH
Confidence            2  233679999 89999  99999999998 6                                124555666666777


Q ss_pred             hccC--CeEEEEecccCCC
Q 024331          208 LVAE--GRMVLTFLGRKSQ  224 (269)
Q Consensus       208 L~pG--G~lv~~~~g~~~~  224 (269)
                      |+||  |++++.-.-.++.
T Consensus       187 l~pg~~g~llI~e~~~~~~  205 (241)
T PF00891_consen  187 LKPGKDGRLLIIEMVLPDD  205 (241)
T ss_dssp             SEECTTEEEEEEEEEECSS
T ss_pred             hCCCCCCeEEEEeeccCCC
Confidence            9999  9999998877654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.97  E-value=0.00017  Score=61.89  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=27.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ...+|+|+|||+|..++.++        +++       |..+|+..|...
T Consensus        31 ~~~~vLDiG~G~G~~~~~la--------~~~-------~~~~v~~vD~s~   65 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAA--------LQF-------PSLQVTAIERNP   65 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHH--------HHC-------CCCEEEEEECCH
Confidence            45799999999999988777        442       567899999754

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.94  E-value=3.6e-05  Score=67.71  Aligned_cols=105  Identities=18%  Similarity=0.288  Sum_probs=64.6

Q ss_pred             CCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEE
Q 024331           14 GGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVF   93 (269)
Q Consensus        14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~   93 (269)
                      |.. |.+....+.. +......+.+.+..+     +++.+|+|+|||+|..+..+.        +..       |..+++
T Consensus        14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~--------~~~-------~~~~v~   71 (204)
T TIGR03587        14 GKE-YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAALK--------RLL-------PFKHIY   71 (204)
T ss_pred             cch-hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHH--------HhC-------CCCeEE
Confidence            444 4444433322 233445555555432     345789999999998877665        431       457899


Q ss_pred             ecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331           94 LNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus        94 ~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      ..|+..+          +.. .+++.. .     .-.+.   .+++.. +||++++|++++..+||++
T Consensus        72 giDiS~~----------~l~-~A~~~~-~-----~~~~~---~~d~~~-~~~~~sfD~V~~~~vL~hl  118 (204)
T TIGR03587        72 GVEINEY----------AVE-KAKAYL-P-----NINII---QGSLFD-PFKDNFFDLVLTKGVLIHI  118 (204)
T ss_pred             EEECCHH----------HHH-HHHhhC-C-----CCcEE---EeeccC-CCCCCCEEEEEECChhhhC
Confidence            9998776          322 122211 1     11232   366666 8899999999999999875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK04266 fibrillarin; Provisional

Probab=97.93  E-value=0.00011  Score=65.92  Aligned_cols=52  Identities=15%  Similarity=0.140  Sum_probs=32.8

Q ss_pred             hhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecccc
Q 024331          205 SEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNY  264 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~  264 (269)
                      .+.|||||.+++++..+..+-... ..    ...++.++.|.+.|+   +.+...++..|
T Consensus       163 ~r~LKpGG~lvI~v~~~~~d~~~~-~~----~~~~~~~~~l~~aGF---~~i~~~~l~p~  214 (226)
T PRK04266        163 EFFLKDGGYLLLAIKARSIDVTKD-PK----EIFKEEIRKLEEGGF---EILEVVDLEPY  214 (226)
T ss_pred             HHhcCCCcEEEEEEecccccCcCC-HH----HHHHHHHHHHHHcCC---eEEEEEcCCCC
Confidence            456779999999877654321111 11    234566788888898   66666666555

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.88  E-value=0.0001  Score=70.82  Aligned_cols=106  Identities=12%  Similarity=0.207  Sum_probs=65.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +++        ..+|+..|+...          +. +..+++. .+.    .
T Consensus       167 ~g~rVLDIGcG~G~~a~~la--------~~~--------g~~V~giDlS~~----------~l-~~A~~~~-~~l----~  214 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAA--------EHY--------GVSVVGVTISAE----------QQ-KLAQERC-AGL----P  214 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHH--------HHC--------CCEEEEEeCCHH----------HH-HHHHHHh-ccC----e
Confidence            35799999999999887666        432        368899998765          22 1122221 111    1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +....+++.. +  ++++|.++|..+++|+..                               +++..+++.=.+-|+
T Consensus       215 --v~~~~~D~~~-l--~~~fD~Ivs~~~~ehvg~-------------------------------~~~~~~l~~i~r~Lk  258 (383)
T PRK11705        215 --VEIRLQDYRD-L--NGQFDRIVSVGMFEHVGP-------------------------------KNYRTYFEVVRRCLK  258 (383)
T ss_pred             --EEEEECchhh-c--CCCCCEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcC
Confidence              2222345433 2  579999999888887411                               122233333356677


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++++..++.+.
T Consensus       259 pGG~lvl~~i~~~~  272 (383)
T PRK11705        259 PDGLFLLHTIGSNK  272 (383)
T ss_pred             CCcEEEEEEccCCC
Confidence            99999999887654

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.88  E-value=2.9e-05  Score=68.96  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .++..+|||+|||.+.-+.        ++.          ..+.|+--||-..                           
T Consensus        70 ~~~~~viaD~GCGdA~la~--------~~~----------~~~~V~SfDLva~---------------------------  104 (219)
T PF05148_consen   70 RPKSLVIADFGCGDAKLAK--------AVP----------NKHKVHSFDLVAP---------------------------  104 (219)
T ss_dssp             S-TTS-EEEES-TT-HHHH--------H------------S---EEEEESS-S---------------------------
T ss_pred             cCCCEEEEECCCchHHHHH--------hcc----------cCceEEEeeccCC---------------------------
Confidence            4567899999999986552        121          2366777777543                           


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .+ +|.+  -+.-..+++++|+|+++...||.=                                  .||..||+.=.|.
T Consensus       105 n~-~Vta--cdia~vPL~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~Rv  147 (219)
T PF05148_consen  105 NP-RVTA--CDIANVPLEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRV  147 (219)
T ss_dssp             ST-TEEE--S-TTS-S--TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHH
T ss_pred             CC-CEEE--ecCccCcCCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHhe
Confidence            01 1222  355678899999999998777642                                  3677888888899


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |||||.|.+......
T Consensus       148 LK~~G~L~IAEV~SR  162 (219)
T PF05148_consen  148 LKPGGILKIAEVKSR  162 (219)
T ss_dssp             EEEEEEEEEEEEGGG
T ss_pred             eccCcEEEEEEeccc
Confidence            999999999987544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.86  E-value=6.1e-05  Score=68.11  Aligned_cols=129  Identities=17%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      -.+.|+|||+|..++.++        +.+         =+|+..|....          |+. .+.++  .      ++-
T Consensus        35 ~~a~DvG~G~Gqa~~~ia--------e~~---------k~VIatD~s~~----------mL~-~a~k~--~------~~~   78 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIA--------EHY---------KEVIATDVSEA----------MLK-VAKKH--P------PVT   78 (261)
T ss_pred             ceEEEeccCCCcchHHHH--------Hhh---------hhheeecCCHH----------HHH-HhhcC--C------Ccc
Confidence            389999999996655555        444         35777887665          432 12222  1      111


Q ss_pred             EeecCCCc-----cCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          132 FTGVPGSF-----YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       132 ~~~vpgSF-----y~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      -+-+|-+|     ...+=+++|||++.+.-|+||+                                  |+.+|.+.=.|
T Consensus        79 y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF----------------------------------dle~fy~~~~r  124 (261)
T KOG3010|consen   79 YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF----------------------------------DLERFYKEAYR  124 (261)
T ss_pred             cccCCccccccccccccCCCcceeeehhhhhHHhh----------------------------------chHHHHHHHHH
Confidence            12233333     3455569999999999999993                                  56667777778


Q ss_pred             hhccCCeEEEEecccCCCCCCChhhhH-H----H---HHHHHHHHHHHHccCc
Q 024331          207 ELVAEGRMVLTFLGRKSQDPSSKECCY-I----W---ELLATALNNMVSEVTK  251 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~~~~~~~~~~~-~----~---~~l~~~l~~mv~eG~i  251 (269)
                      .||+.|-++....=+++ .....+... +    +   .....-++.|.-+|+-
T Consensus       125 vLRk~Gg~iavW~Y~dd-~v~~pE~dsv~~r~~~~~~p~~r~~~~n~~fdgy~  176 (261)
T KOG3010|consen  125 VLRKDGGLIAVWNYNDD-FVDWPEFDSVMLRLYDSTLPYWRSPLRNLLFDGYK  176 (261)
T ss_pred             HcCCCCCEEEEEEccCC-CcCCHHHHHHHHHHhhccCchhhhHHHHhhccccc
Confidence            88888866655544432 222222211 1    1   1236677888888884

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.83  E-value=0.00019  Score=56.15  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|..+..++        +++       |..+|+..|....
T Consensus        20 ~~~vldlG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~   54 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAA--------RLV-------PNGRVYAIERNPE   54 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHH--------HHC-------CCceEEEEcCCHH
Confidence            4599999999999988777        442       4578999997543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.83  E-value=6.9e-05  Score=71.08  Aligned_cols=107  Identities=16%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      -+|+|+|||+|..++.+.        +++       |..+|+..|....       .+..-...+.. .+  .   ...+
T Consensus       198 g~VLDlGCG~G~ls~~la--------~~~-------p~~~v~~vDis~~-------Al~~A~~nl~~-n~--l---~~~~  249 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLA--------RHS-------PKIRLTLSDVSAA-------ALESSRATLAA-NG--L---EGEV  249 (342)
T ss_pred             CeEEEeccCcCHHHHHHH--------HhC-------CCCEEEEEECCHH-------HHHHHHHHHHH-cC--C---CCEE
Confidence            489999999999877666        543       6788999998653       11111111111 11  1   1112


Q ss_pred             EeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 024331          132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE  211 (269)
Q Consensus       132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG  211 (269)
                         +.++.+..  .++++|+++|+..+||.-.                .       .     ..+..+|++.=++-|+||
T Consensus       250 ---~~~D~~~~--~~~~fDlIvsNPPFH~g~~----------------~-------~-----~~~~~~~i~~a~~~Lkpg  296 (342)
T PRK09489        250 ---FASNVFSD--IKGRFDMIISNPPFHDGIQ----------------T-------S-----LDAAQTLIRGAVRHLNSG  296 (342)
T ss_pred             ---EEcccccc--cCCCccEEEECCCccCCcc----------------c-------c-----HHHHHHHHHHHHHhcCcC
Confidence               23555553  3678999999999997211                0       0     134455555556677899


Q ss_pred             CeEEEEec
Q 024331          212 GRMVLTFL  219 (269)
Q Consensus       212 G~lv~~~~  219 (269)
                      |.|+++..
T Consensus       297 G~L~iVan  304 (342)
T PRK09489        297 GELRIVAN  304 (342)
T ss_pred             CEEEEEEe
Confidence            99998753

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.82  E-value=0.00013  Score=64.53  Aligned_cols=127  Identities=18%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ++.+|+|+|||+|..++.++        +.+       |..+++..|....          .. +..+... ..+.   .
T Consensus        87 ~~~~ilDig~G~G~~~~~l~--------~~~-------~~~~v~~iD~~~~----------~~-~~a~~~~~~~~~---~  137 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALA--------KER-------PDARVTAVDISPE----------AL-AVARKNAARLGL---D  137 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHH--------HHC-------CCCEEEEEECCHH----------HH-HHHHHHHHHcCC---C
Confidence            35699999999998888776        432       4578999997654          11 1111111 0111   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccC---CCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQV---PDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~---P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      +  +.-+.+++.. .++++++|+++|+--.+..+..   +..+..         -++..+.. -......++..|++.=.
T Consensus       138 ~--~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~---------~e~~~~~~-~~~~~~~~~~~~i~~~~  204 (251)
T TIGR03534       138 N--VTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF---------HEPRLALF-GGEDGLDFYRRIIAQAP  204 (251)
T ss_pred             e--EEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhh---------cCCHHHHc-CCCcHHHHHHHHHHHHH
Confidence            2  2223477766 5688999999995333221111   111000         00000000 00112345666777667


Q ss_pred             hhhccCCeEEEEe
Q 024331          206 EELVAEGRMVLTF  218 (269)
Q Consensus       206 ~EL~pGG~lv~~~  218 (269)
                      +.|+|||.+++..
T Consensus       205 ~~L~~gG~~~~~~  217 (251)
T TIGR03534       205 RLLKPGGWLLLEI  217 (251)
T ss_pred             HhcccCCEEEEEE
Confidence            7888999999854

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.82  E-value=0.00013  Score=70.09  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=48.9

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      -+|+|+|||+|.-++.+.        +++       |+.+|++.|...-       .+..-+..+.. .+..    ...-
T Consensus       230 ~~VLDLGCGtGvi~i~la--------~~~-------P~~~V~~vD~S~~-------Av~~A~~N~~~-n~~~----~~~~  282 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDESPM-------AVASSRLNVET-NMPE----ALDR  282 (378)
T ss_pred             CeEEEEeccccHHHHHHH--------HhC-------CCCEEEEEECCHH-------HHHHHHHHHHH-cCcc----cCce
Confidence            489999999998877666        543       7899999998542       12111111111 1110    0001


Q ss_pred             EeecCCCccCCCCCCCceeeEeccccccc
Q 024331          132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      +..+.++.+..+ ++.++|+++|+--+|+
T Consensus       283 v~~~~~D~l~~~-~~~~fDlIlsNPPfh~  310 (378)
T PRK15001        283 CEFMINNALSGV-EPFRFNAVLCNPPFHQ  310 (378)
T ss_pred             EEEEEccccccC-CCCCEEEEEECcCccc
Confidence            222335666543 6679999999878887

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.81  E-value=0.00016  Score=61.48  Aligned_cols=75  Identities=25%  Similarity=0.353  Sum_probs=47.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|.-++.+.        +++       |..+|++.|.-..=       +......... .+  .   .+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la--------~~~-------~~~~v~~vDi~~~a-------~~~a~~n~~~-n~--~---~~   82 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALA--------KRG-------PDAKVTAVDINPDA-------LELAKRNAER-NG--L---EN   82 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHH--------HTS-------TCEEEEEEESBHHH-------HHHHHHHHHH-TT--C---TT
T ss_pred             cCCeEEEecCChHHHHHHHH--------HhC-------CCCEEEEEcCCHHH-------HHHHHHHHHh-cC--c---cc
Confidence            35789999999999988777        543       67889999986541       1111111111 11  1   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                        +..+..+.+..+ +++++|+++|+
T Consensus        83 --v~~~~~d~~~~~-~~~~fD~Iv~N  105 (170)
T PF05175_consen   83 --VEVVQSDLFEAL-PDGKFDLIVSN  105 (170)
T ss_dssp             --EEEEESSTTTTC-CTTCEEEEEE-
T ss_pred             --cccccccccccc-cccceeEEEEc
Confidence              333447777654 48999999994

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.79  E-value=0.00018  Score=63.93  Aligned_cols=109  Identities=16%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHH-HHHHhcCCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQK-ILRKQLGSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~-~~~~~~~~~~~~~~~  129 (269)
                      ..-++++|||||+|=            +-|    +..|.-.|.+-|=..|        +..+.. +.+.....++    .
T Consensus        77 K~~vLEvgcGtG~Nf------------kfy----~~~p~~svt~lDpn~~--------mee~~~ks~~E~k~~~~----~  128 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANF------------KFY----PWKPINSVTCLDPNEK--------MEEIADKSAAEKKPLQV----E  128 (252)
T ss_pred             ccceEEecccCCCCc------------ccc----cCCCCceEEEeCCcHH--------HHHHHHHHHhhccCcce----E
Confidence            467899999999993            222    1236788888886666        333322 2222222222    3


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.|-+.+.-+  +|+.|+|.+++.+.|                  ++-.++..+..+|               .+-|+
T Consensus       129 ~fvva~ge~l~~--l~d~s~DtVV~TlvL------------------CSve~~~k~L~e~---------------~rlLR  173 (252)
T KOG4300|consen  129 RFVVADGENLPQ--LADGSYDTVVCTLVL------------------CSVEDPVKQLNEV---------------RRLLR  173 (252)
T ss_pred             EEEeechhcCcc--cccCCeeeEEEEEEE------------------eccCCHHHHHHHH---------------HHhcC
Confidence            577766644333  599999999995544                  2222333344444               56777


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||++++.--+..
T Consensus       174 pgG~iifiEHva~  186 (252)
T KOG4300|consen  174 PGGRIIFIEHVAG  186 (252)
T ss_pred             CCcEEEEEecccc
Confidence            9999999876664

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.75  E-value=0.00022  Score=62.44  Aligned_cols=81  Identities=12%  Similarity=0.025  Sum_probs=47.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      ..+|+|+|||+|..+..+.        +..      .+.-+|+..|.-.+        +  . +..+++. ..++  ..+
T Consensus        73 ~~~VLDiG~GsG~~~~~la--------~~~------~~~g~V~~iD~~~~--------~--~-~~a~~~l~~~~~--~~~  125 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCA--------EAI------ERRGKVYTVEIVKE--------L--A-IYAAQNIERLGY--WGV  125 (205)
T ss_pred             CCEEEEECcCccHHHHHHH--------Hhc------CCCCEEEEEeCCHH--------H--H-HHHHHHHHHcCC--CCc
Confidence            4799999999999998777        432      12357888887665        1  1 1111111 1111  011


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      +.  -+-+++..-+.+.+++|.+++..++++
T Consensus       126 v~--~~~~d~~~~~~~~~~fD~Ii~~~~~~~  154 (205)
T PRK13944        126 VE--VYHGDGKRGLEKHAPFDAIIVTAAAST  154 (205)
T ss_pred             EE--EEECCcccCCccCCCccEEEEccCcch
Confidence            22  223676665555679999999776654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.75  E-value=7.8e-05  Score=67.78  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|.-++.+.        +++       ++++|...++-.-......+++..          .++    .
T Consensus        44 ~~~~IlDlGaG~G~l~L~la--------~r~-------~~a~I~~VEiq~~~a~~A~~nv~l----------n~l----~   94 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLA--------QRT-------EKAKIVGVEIQEEAAEMAQRNVAL----------NPL----E   94 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHh--------ccC-------CCCcEEEEEeCHHHHHHHHHHHHh----------Ccc----h
Confidence            47899999999999999888        654       347787777766544333333321          111    1


Q ss_pred             eEEeecCCCc--cCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 CFFTGVPGSF--YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 ~f~~~vpgSF--y~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -.+..+-+++  +...++..++|+++|         .|+....++.      ..+.+..+..+.+..-++..+++.=++-
T Consensus        95 ~ri~v~~~Di~~~~~~~~~~~fD~Ii~---------NPPyf~~~~~------~~~~~~~~~Ar~e~~~~le~~i~~a~~~  159 (248)
T COG4123          95 ERIQVIEADIKEFLKALVFASFDLIIC---------NPPYFKQGSR------LNENPLRAIARHEITLDLEDLIRAAAKL  159 (248)
T ss_pred             hceeEehhhHHHhhhcccccccCEEEe---------CCCCCCCccc------cCcChhhhhhhhhhcCCHHHHHHHHHHH
Confidence            1222223555  445666669999999         5777764332      1234455666667788899999999999


Q ss_pred             hccCCeEEEEe
Q 024331          208 LVAEGRMVLTF  218 (269)
Q Consensus       208 L~pGG~lv~~~  218 (269)
                      |||||.+.+..
T Consensus       160 lk~~G~l~~V~  170 (248)
T COG4123         160 LKPGGRLAFVH  170 (248)
T ss_pred             ccCCCEEEEEe
Confidence            99999999875

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.74  E-value=0.00019  Score=66.30  Aligned_cols=123  Identities=18%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      +.+|+|+|||+|..++.+.        +++       |..+|+..|+...          .. +..+++. ..++  ..+
T Consensus       122 ~~~vLDlG~GsG~i~~~la--------~~~-------~~~~v~avDis~~----------al-~~A~~n~~~~~~--~~~  173 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACA--------YAF-------PEAEVDAVDISPD----------AL-AVAEINIERHGL--EDR  173 (284)
T ss_pred             CCEEEEEeCchhHHHHHHH--------HHC-------CCCEEEEEECCHH----------HH-HHHHHHHHHcCC--CCc
Confidence            4689999999999888777        443       5689999998654          11 1111111 0111  012


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHH----HHHH--HHHHHHHHHHHhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL----TAYY--EQFQRDFSLFLKC  203 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~----~ay~--~Q~~~D~~~FL~~  203 (269)
                      +  .-+.+++... +|++++|+++|+         |+.+..+  .+.  .. ++++.    .|..  .......+.|++.
T Consensus       174 i--~~~~~D~~~~-~~~~~fD~Iv~N---------PPy~~~~--~~~--~l-~~~~~~ep~~al~gg~dGl~~~~~il~~  236 (284)
T TIGR03533       174 V--TLIQSDLFAA-LPGRKYDLIVSN---------PPYVDAE--DMA--DL-PAEYHHEPELALASGEDGLDLVRRILAE  236 (284)
T ss_pred             E--EEEECchhhc-cCCCCccEEEEC---------CCCCCcc--chh--hC-CHhhhcCHHHHhcCCCcHHHHHHHHHHH
Confidence            2  2233676653 477799999994         5443311  000  00 01110    0000  0122344566666


Q ss_pred             hhhhhccCCeEEEEe
Q 024331          204 RSEELVAEGRMVLTF  218 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~  218 (269)
                      =.+-|+|||++++-+
T Consensus       237 a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       237 AADHLNENGVLVVEV  251 (284)
T ss_pred             HHHhcCCCCEEEEEE
Confidence            667788999998754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.72  E-value=0.00039  Score=61.10  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|+.+.        +..      .++.+|+..|.-..    +   +...++.+. +.+..    .-
T Consensus        77 ~~~~VLDiG~GsG~~a~~la--------~~~------~~~g~V~~vD~~~~----~---~~~A~~~~~-~~g~~----~v  130 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLA--------EIV------GRDGLVVSIERIPE----L---AEKAERRLR-KLGLD----NV  130 (215)
T ss_pred             CcCEEEEECCCccHHHHHHH--------HHh------CCCCEEEEEeCCHH----H---HHHHHHHHH-HCCCC----Ce
Confidence            35799999999999998777        442      13467888887543    1   111111111 11211    11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYS  157 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~a  157 (269)
                      .++.   ++....+.+.+++|++++..+
T Consensus       131 ~~~~---~d~~~~~~~~~~fD~Ii~~~~  155 (215)
T TIGR00080       131 IVIV---GDGTQGWEPLAPYDRIYVTAA  155 (215)
T ss_pred             EEEE---CCcccCCcccCCCCEEEEcCC
Confidence            3333   676665555678999987543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.68  E-value=0.00012  Score=72.08  Aligned_cols=50  Identities=24%  Similarity=0.353  Sum_probs=35.4

Q ss_pred             cCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEe
Q 024331          140 YGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF  218 (269)
Q Consensus       140 y~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~  218 (269)
                      ...+||++++|++||+-|+. |.+.        .| +|.                 -|+       -|.|+|||+++++-
T Consensus       173 ~rLPfp~~~fDmvHcsrc~i~W~~~--------~g-~~l-----------------~ev-------dRvLRpGGyfv~S~  219 (506)
T PF03141_consen  173 QRLPFPSNAFDMVHCSRCLIPWHPN--------DG-FLL-----------------FEV-------DRVLRPGGYFVLSG  219 (506)
T ss_pred             ccccCCccchhhhhcccccccchhc--------cc-cee-----------------ehh-------hhhhccCceEEecC
Confidence            67899999999999999876 7443        22 222                 122       45667999999986


Q ss_pred             cccC
Q 024331          219 LGRK  222 (269)
Q Consensus       219 ~g~~  222 (269)
                      +-..
T Consensus       220 ppv~  223 (506)
T PF03141_consen  220 PPVY  223 (506)
T ss_pred             Cccc
Confidence            5433

; GO: 0008168 methyltransferase activity

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.68  E-value=0.00038  Score=50.87  Aligned_cols=78  Identities=21%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF  132 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~  132 (269)
                      +|+|+|||+|..+..++        +        .+..+++..|+..+-....-+        .....+..    .-.++
T Consensus         1 ~ildig~G~G~~~~~~~--------~--------~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~----~~~~~   52 (107)
T cd02440           1 RVLDLGCGTGALALALA--------S--------GPGARVTGVDISPVALELARK--------AAAALLAD----NVEVL   52 (107)
T ss_pred             CeEEEcCCccHHHHHHh--------c--------CCCCEEEEEeCCHHHHHHHHH--------HHhccccc----ceEEE
Confidence            58999999999877665        2        134788888976651111000        00111110    11232


Q ss_pred             eecCCCccCCCC-CCCceeeEecccccccc
Q 024331          133 TGVPGSFYGRLF-PRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       133 ~~vpgSFy~~lf-P~~Svd~~~Ss~alHWL  161 (269)
                      .   +++..... +.+++|++++...+++.
T Consensus        53 ~---~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440          53 K---GDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             E---cChhhhccccCCceEEEEEccceeeh
Confidence            2   45555443 67789999998887774

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.64  E-value=0.00063  Score=59.97  Aligned_cols=80  Identities=15%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..|..+.        +..      .+..+|+..|.-.. +      +...++.++ ..+  +   .+
T Consensus        76 ~g~~VLdIG~GsG~~t~~la--------~~~------~~~~~V~~vE~~~~-~------~~~a~~~l~-~~g--~---~~  128 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVA--------EIV------GKSGKVVTIERIPE-L------AEKAKKTLK-KLG--Y---DN  128 (212)
T ss_pred             CcCEEEEECCcccHHHHHHH--------Hhc------CCCCEEEEEeCCHH-H------HHHHHHHHH-HcC--C---CC
Confidence            35799999999999997776        332      13467888876443 1      101111111 111  1   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSL  158 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~al  158 (269)
                        +..+-|+....+.+.+.+|++++..+.
T Consensus       129 --v~~~~gd~~~~~~~~~~fD~I~~~~~~  155 (212)
T PRK13942        129 --VEVIVGDGTLGYEENAPYDRIYVTAAG  155 (212)
T ss_pred             --eEEEECCcccCCCcCCCcCEEEECCCc
Confidence              223347777666778899999986554

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.63  E-value=0.00038  Score=61.76  Aligned_cols=34  Identities=12%  Similarity=0.058  Sum_probs=28.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..-+|+|+|||.|+|++.++        ++         -.+|+..|+...
T Consensus        34 ~~~rvLd~GCG~G~da~~LA--------~~---------G~~V~gvD~S~~   67 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLA--------EQ---------GHRVLGVELSEI   67 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHH--------hC---------CCeEEEEeCCHH
Confidence            34699999999999999888        54         388999998776

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.61  E-value=0.00058  Score=59.91  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..+.        ++         ...|+..|...+          +. ...+++. ..... ..
T Consensus        55 ~~~~vLDiGcG~G~~~~~la--------~~---------~~~v~gvD~s~~----------~i-~~a~~~~~~~~~~-~~  105 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELA--------KR---------GAIVKAVDISEQ----------MV-QMARNRAQGRDVA-GN  105 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHH--------HC---------CCEEEEEECCHH----------HH-HHHHHHHHhcCCC-Cc
Confidence            46899999999998777665        22         257888887654          21 1122111 01000 01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      -.|.   .+++...  | +++|+++++..++++
T Consensus       106 i~~~---~~d~~~~--~-~~fD~ii~~~~l~~~  132 (219)
T TIGR02021       106 VEFE---VNDLLSL--C-GEFDIVVCMDVLIHY  132 (219)
T ss_pred             eEEE---ECChhhC--C-CCcCEEEEhhHHHhC
Confidence            1233   3666553  2 899999998888764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.55  E-value=0.00037  Score=59.31  Aligned_cols=123  Identities=13%  Similarity=0.073  Sum_probs=66.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      +.+|+|+|||+|..++.++        ++.       +  +|+..|+...          + .+..+++. ..+.    +
T Consensus        20 ~~~vLdlG~G~G~~~~~l~--------~~~-------~--~v~~vD~s~~----------~-~~~a~~~~~~~~~----~   67 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLK--------GKG-------K--CILTTDINPF----------A-VKELRENAKLNNV----G   67 (179)
T ss_pred             CCeEEEeCCChhHHHHHHH--------hcC-------C--EEEEEECCHH----------H-HHHHHHHHHHcCC----c
Confidence            4689999999999877666        321       2  7888888654          1 11122111 0111    1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.++++..+  .+++|+++|+...|..+..+..-.  ...+-..+...          ......+||+.=.+-|+
T Consensus        68 --~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~l~~~~~~Lk  131 (179)
T TIGR00537        68 --LDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGD--WLDVAIDGGKD----------GRKVIDRFLDELPEILK  131 (179)
T ss_pred             --eEEEEccccccc--CCcccEEEECCCCCCCcchhcccc--hhhhhhhcCCc----------hHHHHHHHHHhHHHhhC
Confidence              222346766643  459999999887775543221100  00000000000          11224556665567788


Q ss_pred             cCCeEEEEeccc
Q 024331          210 AEGRMVLTFLGR  221 (269)
Q Consensus       210 pGG~lv~~~~g~  221 (269)
                      |||.+++...+.
T Consensus       132 ~gG~~~~~~~~~  143 (179)
T TIGR00537       132 EGGRVQLIQSSL  143 (179)
T ss_pred             CCCEEEEEEecc
Confidence            999999977443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.54  E-value=0.00052  Score=62.89  Aligned_cols=107  Identities=22%  Similarity=0.247  Sum_probs=65.6

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC--c
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG--Q  129 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~--~  129 (269)
                      .+|+|+|||+|--|..++        +.         -+||...|+..-           ..+-++.++-.++....  .
T Consensus        91 ~~ilDvGCGgGLLSepLA--------rl---------ga~V~GID~s~~-----------~V~vA~~h~~~dP~~~~~~~  142 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLA--------RL---------GAQVTGIDASDD-----------MVEVANEHKKMDPVLEGAIA  142 (282)
T ss_pred             ceEEEeccCccccchhhH--------hh---------CCeeEeecccHH-----------HHHHHHHhhhcCchhccccc
Confidence            689999999999998877        43         289999997653           22223222211110001  1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +.+.-.-.+-.+..-   .+|.+.|+                            +|.+-+     +|...||.+=.+-|+
T Consensus       143 y~l~~~~~~~E~~~~---~fDaVvcs----------------------------evleHV-----~dp~~~l~~l~~~lk  186 (282)
T KOG1270|consen  143 YRLEYEDTDVEGLTG---KFDAVVCS----------------------------EVLEHV-----KDPQEFLNCLSALLK  186 (282)
T ss_pred             eeeehhhcchhhccc---ccceeeeH----------------------------HHHHHH-----hCHHHHHHHHHHHhC
Confidence            111111122222111   17777773                            344444     788999999999999


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+|+++++-|.
T Consensus       187 P~G~lfittinrt  199 (282)
T KOG1270|consen  187 PNGRLFITTINRT  199 (282)
T ss_pred             CCCceEeeehhhh
Confidence            9999999998774

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.52  E-value=0.00038  Score=60.79  Aligned_cols=106  Identities=13%  Similarity=0.153  Sum_probs=61.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..+.        +.         ...++..|+...          .. ...+.+.. .+.  ..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~----------~~-~~a~~~~~~~~~--~~   94 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLA--------RL---------GANVTGIDASEE----------NI-EVAKLHAKKDPL--LK   94 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHH--------hc---------CCeEEEEeCCHH----------HH-HHHHHHHHHcCC--Cc
Confidence            46899999999998776554        21         134888887544          11 11111111 100  00


Q ss_pred             ceEEeecCCCccCCCCC-CCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFP-RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP-~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -.|..   +++...+.+ ++++|+++++.++|+..+                                 ...+|+.-.+-
T Consensus        95 ~~~~~---~d~~~~~~~~~~~~D~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~  138 (224)
T TIGR01983        95 IEYRC---TSVEDLAEKGAKSFDVVTCMEVLEHVPD---------------------------------PQAFIRACAQL  138 (224)
T ss_pred             eEEEe---CCHHHhhcCCCCCccEEEehhHHHhCCC---------------------------------HHHHHHHHHHh
Confidence            12222   455444443 479999999888887422                                 12344444556


Q ss_pred             hccCCeEEEEeccc
Q 024331          208 LVAEGRMVLTFLGR  221 (269)
Q Consensus       208 L~pGG~lv~~~~g~  221 (269)
                      |+|||.++++...+
T Consensus       139 L~~gG~l~i~~~~~  152 (224)
T TIGR01983       139 LKPGGILFFSTINR  152 (224)
T ss_pred             cCCCcEEEEEecCC
Confidence            77999999876543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.50  E-value=0.00051  Score=63.62  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSAS  124 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~  124 (269)
                      .....+|+|+|||-|..++..+        ++|        .+.|+..+|..|          +... .++   ..|.. 
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA--------~~y--------~v~V~GvTlS~~----------Q~~~-~~~r~~~~gl~-  121 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAA--------EEY--------GVTVVGVTLSEE----------QLAY-AEKRIAARGLE-  121 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHH--------HHc--------CCEEEEeeCCHH----------HHHH-HHHHHHHcCCC-
Confidence            3457999999999999999888        776        489999999998          3221 222   11221 


Q ss_pred             CCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          125 GAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       125 ~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                         .++-+-  .-++-.   ..+.+|=++|.=                               +|..-..+-+..|++.=
T Consensus       122 ---~~v~v~--l~d~rd---~~e~fDrIvSvg-------------------------------mfEhvg~~~~~~ff~~~  162 (283)
T COG2230         122 ---DNVEVR--LQDYRD---FEEPFDRIVSVG-------------------------------MFEHVGKENYDDFFKKV  162 (283)
T ss_pred             ---cccEEE--eccccc---cccccceeeehh-------------------------------hHHHhCcccHHHHHHHH
Confidence               122221  112111   122288888822                               33333556778888888


Q ss_pred             hhhhccCCeEEEEecccCC
Q 024331          205 SEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~~~  223 (269)
                      .+-|+|||+|++-.++...
T Consensus       163 ~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         163 YALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             HhhcCCCceEEEEEecCCC
Confidence            8999999999999888765

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.49  E-value=0.0006  Score=63.75  Aligned_cols=109  Identities=22%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+||+.|+-++.+.        ++    |   + -.|+.-| |+-.|..=|+.+..+.       |..    ..+
T Consensus       116 gk~VLDIGC~nGY~~frM~--------~~----G---A-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~----~~~  167 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRML--------GR----G---A-KSVIGID-PSPLFYLQFEAIKHFL-------GQD----PPV  167 (315)
T ss_pred             CCEEEEecCCCcHHHHHHh--------hc----C---C-CEEEEEC-CChHHHHHHHHHHHHh-------CCC----ccE
Confidence            4699999999999998777        43    1   2 4678888 6666655555554332       111    234


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      |.  +|-..+..+. .+++|++||                 =| |.++..+|-...+..               ..-|+|
T Consensus       168 ~~--lplgvE~Lp~-~~~FDtVF~-----------------MG-VLYHrr~Pl~~L~~L---------------k~~L~~  211 (315)
T PF08003_consen  168 FE--LPLGVEDLPN-LGAFDTVFS-----------------MG-VLYHRRSPLDHLKQL---------------KDSLRP  211 (315)
T ss_pred             EE--cCcchhhccc-cCCcCEEEE-----------------ee-ehhccCCHHHHHHHH---------------HHhhCC
Confidence            43  3556677666 789999999                 13 334555664433333               456779


Q ss_pred             CCeEEEEecccCC
Q 024331          211 EGRMVLTFLGRKS  223 (269)
Q Consensus       211 GG~lv~~~~g~~~  223 (269)
                      ||.|++=++..+.
T Consensus       212 gGeLvLETlvi~g  224 (315)
T PF08003_consen  212 GGELVLETLVIDG  224 (315)
T ss_pred             CCEEEEEEeeecC
Confidence            9999998886654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.49  E-value=0.001  Score=58.12  Aligned_cols=79  Identities=13%  Similarity=0.107  Sum_probs=44.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|..+.        +..         -+|+..|...+    +.+   ...+.+.+ .+  +   .+
T Consensus        78 ~~~~VLeiG~GsG~~t~~la--------~~~---------~~v~~vd~~~~----~~~---~a~~~~~~-~~--~---~~  127 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLA--------HLV---------RRVFSVERIKT----LQW---EAKRRLKQ-LG--L---HN  127 (212)
T ss_pred             CCCEEEEECCCccHHHHHHH--------HHh---------CEEEEEeCCHH----HHH---HHHHHHHH-CC--C---Cc
Confidence            45799999999999987544        221         14677776533    111   11111111 11  1   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                        +..+.+++...+.+.+++|++++..+.++
T Consensus       128 --v~~~~~d~~~~~~~~~~fD~I~~~~~~~~  156 (212)
T PRK00312        128 --VSVRHGDGWKGWPAYAPFDRILVTAAAPE  156 (212)
T ss_pred             --eEEEECCcccCCCcCCCcCEEEEccCchh
Confidence              23344666554445589999998665544

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.44  E-value=0.00047  Score=59.50  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..+.        +.        ...+++..|+...          +. ...++ .+  .     -
T Consensus        14 ~~~iLDiGcG~G~~~~~l~--------~~--------~~~~~~giD~s~~----------~i-~~a~~-~~--~-----~   58 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLR--------DE--------KQVRGYGIEIDQD----------GV-LACVA-RG--V-----N   58 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHH--------hc--------cCCcEEEEeCCHH----------HH-HHHHH-cC--C-----e
Confidence            4689999999998765544        22        1245677776432          11 11111 11  1     2


Q ss_pred             EEeecCCCccC-C-CCCCCceeeEecccccccccc
Q 024331          131 FFTGVPGSFYG-R-LFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       131 f~~~vpgSFy~-~-lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      ++.   +++.. . .++++++|+++|+.++||+.+
T Consensus        59 ~~~---~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d   90 (194)
T TIGR02081        59 VIQ---GDLDEGLEAFPDKSFDYVILSQTLQATRN   90 (194)
T ss_pred             EEE---EEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence            323   55544 2 378899999999999999744

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.44  E-value=0.00062  Score=63.63  Aligned_cols=74  Identities=22%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      .+|+|+|||+|..++.++        +.+       |..+|+..|+...=       +.......+ ..+..    .+  
T Consensus       135 ~~VLDlG~GsG~iai~la--------~~~-------p~~~V~avDis~~a-------l~~A~~n~~-~~~l~----~~--  185 (307)
T PRK11805        135 TRILDLCTGSGCIAIACA--------YAF-------PDAEVDAVDISPDA-------LAVAEINIE-RHGLE----DR--  185 (307)
T ss_pred             CEEEEEechhhHHHHHHH--------HHC-------CCCEEEEEeCCHHH-------HHHHHHHHH-HhCCC----Cc--
Confidence            689999999999888776        432       56899999986540       111111111 11110    11  


Q ss_pred             EeecCCCccCCCCCCCceeeEecc
Q 024331          132 FTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       132 ~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                      +..+-+++... +|++++|+++|+
T Consensus       186 i~~~~~D~~~~-l~~~~fDlIvsN  208 (307)
T PRK11805        186 VTLIESDLFAA-LPGRRYDLIVSN  208 (307)
T ss_pred             EEEEECchhhh-CCCCCccEEEEC
Confidence            22233777653 477799999994

>PRK14967 putative methyltransferase; Provisional

Probab=97.42  E-value=0.0012  Score=58.27  Aligned_cols=124  Identities=13%  Similarity=0.019  Sum_probs=64.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.+.        +.        +..+|+..|+...   .    +........ ..+  .    + 
T Consensus        37 ~~~vLDlGcG~G~~~~~la--------~~--------~~~~v~~vD~s~~---~----l~~a~~n~~-~~~--~----~-   85 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAA--------AA--------GAGSVTAVDISRR---A----VRSARLNAL-LAG--V----D-   85 (223)
T ss_pred             CCeEEEecCCHHHHHHHHH--------Hc--------CCCeEEEEECCHH---H----HHHHHHHHH-HhC--C----e-
Confidence            4699999999999877665        21        1137888887654   1    110011011 111  1    1 


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC-CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~-nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                       +..+-+++.. .++++++|+++++--.+..+...  ..+ +....|..+..           ....+..|++.=.+-|+
T Consensus        86 -~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~l~~a~~~Lk  150 (223)
T PRK14967         86 -VDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAGPD-----------GRAVLDRLCDAAPALLA  150 (223)
T ss_pred             -eEEEECchhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCCCc-----------HHHHHHHHHHHHHHhcC
Confidence             2223367765 46888999999954322222111  000 00011111110           12345566665567788


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||++++....
T Consensus       151 ~gG~l~~~~~~  161 (223)
T PRK14967        151 PGGSLLLVQSE  161 (223)
T ss_pred             CCcEEEEEEec
Confidence            99999986543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.40  E-value=0.00034  Score=63.22  Aligned_cols=107  Identities=16%  Similarity=0.236  Sum_probs=64.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||-|--|..++        +.         -+.|+..|+..-          +. +-.+.+.-..     .
T Consensus        59 ~g~~vLDvGCGgG~Lse~mA--------r~---------Ga~VtgiD~se~----------~I-~~Ak~ha~e~-----g  105 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLA--------RL---------GASVTGIDASEK----------PI-EVAKLHALES-----G  105 (243)
T ss_pred             CCCeEEEecCCccHhhHHHH--------HC---------CCeeEEecCChH----------HH-HHHHHhhhhc-----c
Confidence            35899999999985555444        32         289999998764          22 2222221110     1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +.+-=.+..-.+.....+++|++.|   ++=|.++|.               +.               .|+++=++=+|
T Consensus       106 v~i~y~~~~~edl~~~~~~FDvV~c---mEVlEHv~d---------------p~---------------~~~~~c~~lvk  152 (243)
T COG2227         106 VNIDYRQATVEDLASAGGQFDVVTC---MEVLEHVPD---------------PE---------------SFLRACAKLVK  152 (243)
T ss_pred             ccccchhhhHHHHHhcCCCccEEEE---hhHHHccCC---------------HH---------------HHHHHHHHHcC
Confidence            1111122444566666799999998   444444553               11               24444466777


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||.|+++++-|.
T Consensus       153 P~G~lf~STinrt  165 (243)
T COG2227         153 PGGILFLSTINRT  165 (243)
T ss_pred             CCcEEEEeccccC
Confidence            9999999998764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.40  E-value=0.001  Score=61.18  Aligned_cols=126  Identities=14%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCce
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQC  130 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~  130 (269)
                      .+|+|+|||+|..++.++        ..+       |..+|+..|+...          ... ..+++. ..+.  ..+ 
T Consensus       116 ~~vLDlG~GsG~i~l~la--------~~~-------~~~~v~avDis~~----------al~-~a~~n~~~~~~--~~~-  166 (284)
T TIGR00536       116 LHILDLGTGSGCIALALA--------YEF-------PNAEVIAVDISPD----------ALA-VAEENAEKNQL--EHR-  166 (284)
T ss_pred             CEEEEEeccHhHHHHHHH--------HHC-------CCCEEEEEECCHH----------HHH-HHHHHHHHcCC--CCc-
Confidence            689999999998888776        432       5678999997654          111 111111 0111  011 


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc-e-EEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN-I-FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~-i-~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                       +..+.++++.. +|++++|+++|+         |+.+..+.-. . -...-.|..+... -.-...+.+.+++.=.+-|
T Consensus       167 -v~~~~~d~~~~-~~~~~fDlIvsN---------PPyi~~~~~~~~~~~~~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L  234 (284)
T TIGR00536       167 -VEFIQSNLFEP-LAGQKIDIIVSN---------PPYIDEEDLADLPNVVRFEPLLALVG-GDDGLNILRQIIELAPDYL  234 (284)
T ss_pred             -EEEEECchhcc-CcCCCccEEEEC---------CCCCCcchhhcCCcccccCcHHHhcC-CCcHHHHHHHHHHHHHHhc
Confidence             22233677663 466689999994         3333210000 0 0000011100000 0012345566666666677


Q ss_pred             ccCCeEEEEe
Q 024331          209 VAEGRMVLTF  218 (269)
Q Consensus       209 ~pGG~lv~~~  218 (269)
                      +|||.+++-+
T Consensus       235 ~~gG~l~~e~  244 (284)
T TIGR00536       235 KPNGFLVCEI  244 (284)
T ss_pred             cCCCEEEEEE
Confidence            8999988755

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.37  E-value=0.00056  Score=62.73  Aligned_cols=51  Identities=16%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             CCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEE
Q 024331          137 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL  216 (269)
Q Consensus       137 gSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~  216 (269)
                      -++-+.+++++|+|+++...||+=                                  .||..|++.=.|.|+|||.+.+
T Consensus       217 cDm~~vPl~d~svDvaV~CLSLMg----------------------------------tn~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  217 CDMRNVPLEDESVDVAVFCLSLMG----------------------------------TNLADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             ccccCCcCccCcccEEEeeHhhhc----------------------------------ccHHHHHHHHHHHhccCceEEE
Confidence            366778899999999988555532                                  4778888888899999999999


Q ss_pred             Eeccc
Q 024331          217 TFLGR  221 (269)
Q Consensus       217 ~~~g~  221 (269)
                      .-.-.
T Consensus       263 AEv~S  267 (325)
T KOG3045|consen  263 AEVKS  267 (325)
T ss_pred             Eehhh
Confidence            87644

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.34  E-value=0.0015  Score=60.24  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|..++.+.        +.        ..-+|+..|+...
T Consensus       160 g~~VLDvGcGsG~lai~aa--------~~--------g~~~V~avDid~~  193 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAAL--------KL--------GAAKVVGIDIDPL  193 (288)
T ss_pred             CCEEEEeCCChhHHHHHHH--------Hc--------CCCeEEEEECCHH
Confidence            4799999999998776543        22        1247888887765

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.29  E-value=0.0025  Score=55.70  Aligned_cols=76  Identities=17%  Similarity=0.182  Sum_probs=44.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..++        +.         ..+|+..|+..+          +.. ..++.. ..+.. ..
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~--------~~---------~~~v~~~D~s~~----------~i~-~a~~~~~~~~~~-~~  113 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLA--------RR---------GAKVVASDISPQ----------MVE-EARERAPEAGLA-GN  113 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHH--------Hc---------CCEEEEEECCHH----------HHH-HHHHHHHhcCCc-cC
Confidence            45799999999999877665        32         145899998665          211 111111 01000 01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      -.|..   +++   ..+++++|+++++..+|+
T Consensus       114 i~~~~---~d~---~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580        114 ITFEV---GDL---ESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             cEEEE---cCc---hhccCCcCEEEEcchhhc
Confidence            12333   443   235689999999998855

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.29  E-value=0.0015  Score=56.14  Aligned_cols=107  Identities=20%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.-+|+|+|||+|..+..+.        +++      .+..+|+..|+...-         .        . .     +-
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~--------~~~------~~~~~v~~vDis~~~---------~--------~-~-----~i   74 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAV--------EQV------GGKGRVIAVDLQPMK---------P--------I-E-----NV   74 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHH--------HHh------CCCceEEEEeccccc---------c--------C-C-----Cc
Confidence            45799999999998777666        432      123568888875530         0        0 0     11


Q ss_pred             eEEeecCCCccCC--------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331          130 CFFTGVPGSFYGR--------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL  201 (269)
Q Consensus       130 ~f~~~vpgSFy~~--------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL  201 (269)
                      .++.   +++.+.        .+|.+++|++++..+.|- +-.+.        +      .     ...  ...+...+|
T Consensus        75 ~~~~---~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~-~g~~~--------~------~-----~~~--~~~~~~~~l  129 (188)
T TIGR00438        75 DFIR---GDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI-SGYWD--------I------D-----HLR--SIDLVELAL  129 (188)
T ss_pred             eEEE---eeCCChhHHHHHHHHhCCCCccEEEcCCCCCC-CCCcc--------c------c-----HHH--HHHHHHHHH
Confidence            2332   344332        367889999999655321 00000        0      0     001  113455666


Q ss_pred             hhhhhhhccCCeEEEEe
Q 024331          202 KCRSEELVAEGRMVLTF  218 (269)
Q Consensus       202 ~~Ra~EL~pGG~lv~~~  218 (269)
                      +.=.+-|+|||++++..
T Consensus       130 ~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       130 DIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HHHHHHccCCCEEEEEE
Confidence            66677788999999965

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.28  E-value=0.01  Score=52.64  Aligned_cols=172  Identities=11%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhhcccCCCCce-EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHh
Q 024331           30 SIAKPITEEAMTKLFCSTSPTKV-AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRS  108 (269)
Q Consensus        30 ~~~~~~l~~ai~~~~~~~~~~~~-~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~  108 (269)
                      ++-++-|.+++++.+.    ..- +|+++|||||--+...+        +++       |.++--=+|...+-+.++-. 
T Consensus         8 eRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA--------~~l-------P~l~WqPSD~~~~~~~sI~a-   67 (204)
T PF06080_consen    8 ERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFA--------QAL-------PHLTWQPSDPDDNLRPSIRA-   67 (204)
T ss_pred             hhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHH--------HHC-------CCCEEcCCCCChHHHhhHHH-
Confidence            3334444445555432    222 79999999998877776        543       77888889998884433222 


Q ss_pred             hHHHHHHHHHhcCC-CCCCCCceEEeecCCCccC----CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCH
Q 024331          109 LASFQKILRKQLGS-ASGAAGQCFFTGVPGSFYG----RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPP  183 (269)
Q Consensus       109 l~~~~~~~~~~~~~-~~~~~~~~f~~~vpgSFy~----~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~  183 (269)
                             +.++.+. +.  .+++.+= |...-..    -.++..++|.++|.+.+|-.+-                   +
T Consensus        68 -------~~~~~~~~Nv--~~P~~lD-v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~-------------------~  118 (204)
T PF06080_consen   68 -------WIAEAGLPNV--RPPLALD-VSAPPWPWELPAPLSPESFDAIFCINMLHISPW-------------------S  118 (204)
T ss_pred             -------HHHhcCCccc--CCCeEee-cCCCCCccccccccCCCCcceeeehhHHHhcCH-------------------H
Confidence                   2222221 11  0222221 1111011    1236789999999999997322                   1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHH----------H--HHHHHHHHHHHHccCc
Q 024331          184 CVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYI----------W--ELLATALNNMVSEVTK  251 (269)
Q Consensus       184 ~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~----------~--~~l~~~l~~mv~eG~i  251 (269)
                      .+            ..+++.=++-|+|||+|++--+=...+..++..+..|          |  ..++++-.--.+.|+ 
T Consensus       119 ~~------------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL-  185 (204)
T PF06080_consen  119 AV------------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL-  185 (204)
T ss_pred             HH------------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC-
Confidence            11            2233334778889999988755333332322222112          1  235655555556688 


Q ss_pred             ccccccceeccccc
Q 024331          252 SFLLLIVFNQLNYK  265 (269)
Q Consensus       252 ~~~~~d~FnlP~~~  265 (269)
                        +..+...||..+
T Consensus       186 --~l~~~~~MPANN  197 (204)
T PF06080_consen  186 --ELEEDIDMPANN  197 (204)
T ss_pred             --ccCcccccCCCC
Confidence              566677788765

The function of this family is unknown.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.28  E-value=0.0015  Score=63.59  Aligned_cols=73  Identities=22%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      ..+|+|+|||+|..++.+.        +.       .|..+|+..|+...          +.. ..+++. ..+.    +
T Consensus       252 ~~rVLDLGcGSG~IaiaLA--------~~-------~p~a~VtAVDiS~~----------ALe-~AreNa~~~g~----r  301 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVA--------LE-------RPDAFVRASDISPP----------ALE-TARKNAADLGA----R  301 (423)
T ss_pred             CCEEEEEeChhhHHHHHHH--------Hh-------CCCCEEEEEECCHH----------HHH-HHHHHHHHcCC----c
Confidence            3589999999999988776        33       25688999998654          211 122111 1111    1


Q ss_pred             eEEeecCCCccCCCCC-CCceeeEecc
Q 024331          130 CFFTGVPGSFYGRLFP-RNSVHLFHSS  155 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP-~~Svd~~~Ss  155 (269)
                        +..+-+++....+| .+++|+++|+
T Consensus       302 --V~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        302 --VEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             --EEEEEcchhccccccCCCccEEEEC
Confidence              22233787765555 4689999994

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.27  E-value=0.0033  Score=55.99  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..|.|.+.+..+.   .++.-+|+|.|||.|+|++.++        ++         -.+|+..|+...
T Consensus        22 p~~~L~~~~~~~~---~~~~~rvL~~gCG~G~da~~LA--------~~---------G~~V~avD~s~~   70 (218)
T PRK13255         22 VNPLLQKYWPALA---LPAGSRVLVPLCGKSLDMLWLA--------EQ---------GHEVLGVELSEL   70 (218)
T ss_pred             CCHHHHHHHHhhC---CCCCCeEEEeCCCChHhHHHHH--------hC---------CCeEEEEccCHH
Confidence            4455555444321   2234699999999999999888        43         378999998776

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.25  E-value=0.001  Score=66.27  Aligned_cols=75  Identities=12%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +.+|+|+|||+|..++.++        ...       |..+|+..|+... .      +........ ..+..    .. 
T Consensus       139 ~~~VLDlG~GsG~iai~la--------~~~-------p~~~v~avDis~~-a------l~~A~~N~~-~~~l~----~~-  190 (506)
T PRK01544        139 FLNILELGTGSGCIAISLL--------CEL-------PNANVIATDISLD-A------IEVAKSNAI-KYEVT----DR-  190 (506)
T ss_pred             CCEEEEccCchhHHHHHHH--------HHC-------CCCeEEEEECCHH-H------HHHHHHHHH-HcCCc----cc-
Confidence            4689999999999988776        432       5689999998543 1      111111111 11110    11 


Q ss_pred             EEeecCCCccCCCCCCCceeeEecc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                       +..+-+++... ++++++|+++|+
T Consensus       191 -v~~~~~D~~~~-~~~~~fDlIvsN  213 (506)
T PRK01544        191 -IQIIHSNWFEN-IEKQKFDFIVSN  213 (506)
T ss_pred             -eeeeecchhhh-CcCCCccEEEEC
Confidence             22234776653 467799999995

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.23  E-value=0.001  Score=58.70  Aligned_cols=105  Identities=13%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..+.        +.         ..+++..|+..+--           ...+.+. ..+.   .
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~~~-----------~~a~~~~~~~~~---~   96 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMA--------RL---------GADVTGIDASEENI-----------EVARLHALESGL---K   96 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------Hc---------CCeEEEEcCCHHHH-----------HHHHHHHHHcCC---c
Confidence            35789999999998765444        22         14688888865511           1111111 0111   1


Q ss_pred             ceEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      --+..   +++...+ .+++.+|+++++..+++...                                 ...+|+.-.+-
T Consensus        97 ~~~~~---~~~~~~~~~~~~~fD~Ii~~~~l~~~~~---------------------------------~~~~l~~~~~~  140 (233)
T PRK05134         97 IDYRQ---TTAEELAAEHPGQFDVVTCMEMLEHVPD---------------------------------PASFVRACAKL  140 (233)
T ss_pred             eEEEe---cCHHHhhhhcCCCccEEEEhhHhhccCC---------------------------------HHHHHHHHHHH
Confidence            12222   3333322 35689999999888776421                                 11233333555


Q ss_pred             hccCCeEEEEeccc
Q 024331          208 LVAEGRMVLTFLGR  221 (269)
Q Consensus       208 L~pGG~lv~~~~g~  221 (269)
                      |+|||+++++.+.+
T Consensus       141 L~~gG~l~v~~~~~  154 (233)
T PRK05134        141 VKPGGLVFFSTLNR  154 (233)
T ss_pred             cCCCcEEEEEecCC
Confidence            66999999987654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.21  E-value=0.0013  Score=60.47  Aligned_cols=109  Identities=16%  Similarity=0.228  Sum_probs=60.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||-|..++.++        +++        .++|....+..+          .. +..+++. ..+.  ..
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a--------~~~--------g~~v~gitlS~~----------Q~-~~a~~~~~~~gl--~~  112 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAA--------ERY--------GCHVTGITLSEE----------QA-EYARERIREAGL--ED  112 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHH--------HHH----------EEEEEES-HH----------HH-HHHHHHHHCSTS--SS
T ss_pred             CCCEEEEeCCCccHHHHHHH--------HHc--------CcEEEEEECCHH----------HH-HHHHHHHHhcCC--CC
Confidence            45799999999999999888        765        277888887665          21 1122211 1111  12


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .+-+.  -.+|.+  ++. ++|-++|.-++.-+                               ..+++..|++.=.+-|
T Consensus       113 ~v~v~--~~D~~~--~~~-~fD~IvSi~~~Ehv-------------------------------g~~~~~~~f~~~~~~L  156 (273)
T PF02353_consen  113 RVEVR--LQDYRD--LPG-KFDRIVSIEMFEHV-------------------------------GRKNYPAFFRKISRLL  156 (273)
T ss_dssp             TEEEE--ES-GGG------S-SEEEEESEGGGT-------------------------------CGGGHHHHHHHHHHHS
T ss_pred             ceEEE--Eeeccc--cCC-CCCEEEEEechhhc-------------------------------ChhHHHHHHHHHHHhc
Confidence            23332  256654  233 99999995444332                               1134555566556777


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++..++...
T Consensus       157 kpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  157 KPGGRLVLQTITHRD  171 (273)
T ss_dssp             ETTEEEEEEEEEE--
T ss_pred             CCCcEEEEEeccccc
Confidence            899999998887643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.21  E-value=0.0013  Score=59.23  Aligned_cols=36  Identities=31%  Similarity=0.413  Sum_probs=27.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..++.++        +..       |..+++..|....
T Consensus       108 ~~~~vLDiG~GsG~~~~~la--------~~~-------~~~~v~~iDis~~  143 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALA--------KER-------PDAEVTAVDISPE  143 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHH--------HHC-------CCCEEEEEECCHH
Confidence            45799999999999888776        332       4678999997654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.19  E-value=0.0021  Score=62.51  Aligned_cols=129  Identities=17%  Similarity=0.107  Sum_probs=72.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|.-|+.++        +..       +..+|+..|...+=       +....+.+++ .|  .    .+
T Consensus       239 g~~VLDlcag~G~kt~~la--------~~~-------~~~~v~a~D~~~~~-------l~~~~~n~~r-~g--~----~~  289 (426)
T TIGR00563       239 EETILDACAAPGGKTTHIL--------ELA-------PQAQVVALDIHEHR-------LKRVYENLKR-LG--L----TI  289 (426)
T ss_pred             CCeEEEeCCCccHHHHHHH--------HHc-------CCCeEEEEeCCHHH-------HHHHHHHHHH-cC--C----Ce
Confidence            4699999999999999877        442       24689999986651       1111111111 12  2    23


Q ss_pred             EEeecCCCccCCCC--CCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          131 FFTGVPGSFYGRLF--PRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       131 f~~~vpgSFy~~lf--P~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      .+..+.++.....+  +.+++|.++.   .+++.-+.+.|+...        . .++ ...+.    ..+.-..+|+.=+
T Consensus       290 ~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------~-~~~-~~~~~----l~~lQ~~lL~~a~  355 (426)
T TIGR00563       290 KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------L-RKP-RDIAE----LAELQSEILDAIW  355 (426)
T ss_pred             EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh--------c-CCH-HHHHH----HHHHHHHHHHHHH
Confidence            33334455443333  6788999986   233333334443211        0 111 11122    2333455665556


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+|+.++....
T Consensus       356 ~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       356 PLLKTGGTLVYATCSVL  372 (426)
T ss_pred             HhcCCCcEEEEEeCCCC
Confidence            67889999999998775

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.16  E-value=0.0031  Score=57.25  Aligned_cols=149  Identities=14%  Similarity=0.219  Sum_probs=83.6

Q ss_pred             HHHhcHHHHHHHHH--------HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCc
Q 024331           18 YASNSLVQEKVISI--------AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPE   89 (269)
Q Consensus        18 Y~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~   89 (269)
                      |.+++..+....-.        -..+|....-++..-....+.+|+.+|||.|...+.++        +.     .+.|.
T Consensus        31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll--------~~-----~~n~~   97 (264)
T KOG2361|consen   31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLL--------KT-----SPNNR   97 (264)
T ss_pred             hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhh--------hc-----CCCCC
Confidence            55555544444322        45677776666654332334599999999997777666        43     24456


Q ss_pred             ceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCC
Q 024331           90 FQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLE  169 (269)
Q Consensus        90 ~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~  169 (269)
                      +.||+.|...+          . .+-++++.+... ..-..|+.-.-++=-...++.+|+|++.-.+.   ||-+|+.  
T Consensus        98 l~v~acDfsp~----------A-i~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe--  160 (264)
T KOG2361|consen   98 LKVYACDFSPR----------A-IELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE--  160 (264)
T ss_pred             eEEEEcCCChH----------H-HHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH--
Confidence            99999998887          1 111222221110 00123444333333567778889998876333   3333331  


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       170 ~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                                        . -.++.+.+.+.|       ||||.|++--.|+.
T Consensus       161 ------------------k-~~~a~~nl~~ll-------KPGG~llfrDYg~~  187 (264)
T KOG2361|consen  161 ------------------K-MQSVIKNLRTLL-------KPGGSLLFRDYGRY  187 (264)
T ss_pred             ------------------H-HHHHHHHHHHHh-------CCCcEEEEeecccc
Confidence                              1 122344454444       59999999866664

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.14  E-value=0.0035  Score=61.01  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=68.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|.-|+.++        ++.       +...|+..|+...=       +...++.+. +.|  .   ...
T Consensus       245 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~s~~~-------l~~~~~n~~-~~g--~---~~~  296 (427)
T PRK10901        245 GERVLDACAAPGGKTAHIL--------ELA-------PQAQVVALDIDAQR-------LERVRENLQ-RLG--L---KAT  296 (427)
T ss_pred             CCEEEEeCCCCChHHHHHH--------HHc-------CCCEEEEEeCCHHH-------HHHHHHHHH-HcC--C---CeE
Confidence            4689999999999998777        442       23678999876651       111111111 111  1   112


Q ss_pred             EEeecCCCccCC--CCCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          131 FFTGVPGSFYGR--LFPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       131 f~~~vpgSFy~~--lfP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      +   +.++....  .++++++|.+++   .+...-+.+-|...       |. .  .++-.+    .+.+....+|+.=.
T Consensus       297 ~---~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~-------~~-~--~~~~l~----~l~~~q~~iL~~a~  359 (427)
T PRK10901        297 V---IVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIK-------WL-R--RPEDIA----ALAALQSEILDALW  359 (427)
T ss_pred             E---EEcCcccchhhcccCCCCEEEECCCCCcccccccCcccc-------cc-C--CHHHHH----HHHHHHHHHHHHHH
Confidence            2   33555432  256788999995   11111112222211       10 0  111111    23344556676666


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+|+.++....
T Consensus       360 ~~LkpGG~lvystcs~~  376 (427)
T PRK10901        360 PLLKPGGTLLYATCSIL  376 (427)
T ss_pred             HhcCCCCEEEEEeCCCC
Confidence            78889999999987554

>PRK14968 putative methyltransferase; Provisional

Probab=97.01  E-value=0.0051  Score=51.81  Aligned_cols=125  Identities=12%  Similarity=0.045  Sum_probs=63.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.+.        ++         ..+|+..|...+ .   ....   .+.+.. .+..-  ..-.
T Consensus        24 ~~~vLd~G~G~G~~~~~l~--------~~---------~~~v~~~D~s~~-~---~~~a---~~~~~~-~~~~~--~~~~   76 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAA--------KN---------GKKVVGVDINPY-A---VECA---KCNAKL-NNIRN--NGVE   76 (188)
T ss_pred             CCEEEEEccccCHHHHHHH--------hh---------cceEEEEECCHH-H---HHHH---HHHHHH-cCCCC--cceE
Confidence            4689999999999877666        22         257888886644 1   1111   111111 11100  0012


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC-CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~-nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +   +.+++... ++++++|+++++..+.+-.  |..... -....+..+..           .......|++.=.+-|+
T Consensus        77 ~---~~~d~~~~-~~~~~~d~vi~n~p~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~~~~Lk  139 (188)
T PRK14968         77 V---IRSDLFEP-FRGDKFDVILFNPPYLPTE--EEEEWDDWLNYALSGGKD-----------GREVIDRFLDEVGRYLK  139 (188)
T ss_pred             E---Eecccccc-ccccCceEEEECCCcCCCC--chhhhhhhhhhhhccCcC-----------hHHHHHHHHHHHHHhcC
Confidence            2   33666664 4666999999854432211  110000 00000000000           12234567777778888


Q ss_pred             cCCeEEEEec
Q 024331          210 AEGRMVLTFL  219 (269)
Q Consensus       210 pGG~lv~~~~  219 (269)
                      |||.+++...
T Consensus       140 ~gG~~~~~~~  149 (188)
T PRK14968        140 PGGRILLLQS  149 (188)
T ss_pred             CCeEEEEEEc
Confidence            9999988763

>PLN03075 nicotianamine synthase; Provisional

Probab=96.99  E-value=0.01  Score=55.37  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      .+-+|||+|||.|+-|..++        ...     -.|.-++..-|.-.- -+.+-+.+      +.+..+..-   +-
T Consensus       123 ~p~~VldIGcGpgpltaiil--------aa~-----~~p~~~~~giD~d~~-ai~~Ar~~------~~~~~gL~~---rV  179 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVL--------AKH-----HLPTTSFHNFDIDPS-ANDVARRL------VSSDPDLSK---RM  179 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHH--------HHh-----cCCCCEEEEEeCCHH-HHHHHHHH------hhhccCccC---Cc
Confidence            57899999999998766555        211     126678888887552 21111111      111111100   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|..   ++--+..-+.+.+|++|+. ++|-.++-                .+..+.+..               ++-|+
T Consensus       180 ~F~~---~Da~~~~~~l~~FDlVF~~-ALi~~dk~----------------~k~~vL~~l---------------~~~Lk  224 (296)
T PLN03075        180 FFHT---ADVMDVTESLKEYDVVFLA-ALVGMDKE----------------EKVKVIEHL---------------GKHMA  224 (296)
T ss_pred             EEEE---CchhhcccccCCcCEEEEe-cccccccc----------------cHHHHHHHH---------------HHhcC
Confidence            4544   4433321124789999999 76643321                122233333               56678


Q ss_pred             cCCeEEEEe
Q 024331          210 AEGRMVLTF  218 (269)
Q Consensus       210 pGG~lv~~~  218 (269)
                      |||++++-.
T Consensus       225 PGG~Lvlr~  233 (296)
T PLN03075        225 PGALLMLRS  233 (296)
T ss_pred             CCcEEEEec
Confidence            999999976

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.94  E-value=0.0033  Score=61.40  Aligned_cols=130  Identities=10%  Similarity=0.051  Sum_probs=73.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|.-|+.++        +..      .+..+|+..|+..+       .+....+.+. +.|  .   .++
T Consensus       238 g~~VLD~cagpGgkt~~la--------~~~------~~~g~V~a~Dis~~-------rl~~~~~n~~-r~g--~---~~v  290 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIA--------ELM------KDQGKILAVDISRE-------KIQLVEKHAK-RLK--L---SSI  290 (431)
T ss_pred             CCEEEEeCCCccHHHHHHH--------HHc------CCCCEEEEEECCHH-------HHHHHHHHHH-HcC--C---CeE
Confidence            4689999999999999877        442      13579999998765       1111111111 112  1   122


Q ss_pred             EEeecCCCccCCC-CCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRL-FPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~l-fP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                        ..+-++..... +.++++|.++.   .+.+..+.+.|....         .. +++    -..+..+.-...|..=++
T Consensus       291 --~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~---------~~-~~~----~~~~l~~~Q~~iL~~a~~  354 (431)
T PRK14903        291 --EIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLR---------RV-NKE----DFKKLSEIQLRIVSQAWK  354 (431)
T ss_pred             --EEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHH---------hC-CHH----HHHHHHHHHHHHHHHHHH
Confidence              22224443322 34678999986   233444444443211         00 111    112234455666766677


Q ss_pred             hhccCCeEEEEecccCC
Q 024331          207 ELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~  223 (269)
                      -|+|||.|+.++.....
T Consensus       355 ~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        355 LLEKGGILLYSTCTVTK  371 (431)
T ss_pred             hcCCCCEEEEEECCCCh
Confidence            88899999999988753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.92  E-value=0.0071  Score=58.99  Aligned_cols=127  Identities=15%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.+.        +..      .+..+|+..|....       .+....+.++ +.|  +   .+ 
T Consensus       253 g~~VLDl~ag~G~kt~~la--------~~~------~~~g~v~a~D~~~~-------rl~~~~~n~~-r~g--~---~~-  304 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIA--------ELM------GDQGEIWAVDRSAS-------RLKKLQENAQ-RLG--L---KS-  304 (434)
T ss_pred             cCEEEEeCCCCchhHHHHH--------HHh------CCCceEEEEcCCHH-------HHHHHHHHHH-HcC--C---Ce-
Confidence            4689999999999998877        442      13468999998544       1111111111 112  2   12 


Q ss_pred             EEeecCCCccCCC----CCCCceeeEeccccccccccCCCCCCCCCcceEEc-----CCCCHHHHHHHHHHHHHHHHHHH
Q 024331          131 FFTGVPGSFYGRL----FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA-----STSPPCVLTAYYEQFQRDFSLFL  201 (269)
Q Consensus       131 f~~~vpgSFy~~l----fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~-----~~s~~~v~~ay~~Q~~~D~~~FL  201 (269)
                       +..+.++.....    ++++++|.++.        +.|+.=.   |.+.-.     ..++ ...    ....+.-..+|
T Consensus       305 -v~~~~~D~~~~~~~~~~~~~~fD~Vl~--------DaPCSg~---G~~~r~p~~~~~~~~-~~~----~~l~~~Q~~iL  367 (434)
T PRK14901        305 -IKILAADSRNLLELKPQWRGYFDRILL--------DAPCSGL---GTLHRHPDARWRQTP-EKI----QELAPLQAELL  367 (434)
T ss_pred             -EEEEeCChhhcccccccccccCCEEEE--------eCCCCcc---cccccCcchhhhCCH-HHH----HHHHHHHHHHH
Confidence             222335554433    45788999986        4454211   111100     0011 111    12334446677


Q ss_pred             hhhhhhhccCCeEEEEecccC
Q 024331          202 KCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       202 ~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                      ..=++-|||||+|+.++....
T Consensus       368 ~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        368 ESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             HHHHHhcCCCCEEEEEeCCCC
Confidence            766778889999999886654

>PHA03411 putative methyltransferase; Provisional

Probab=96.91  E-value=0.0031  Score=58.34  Aligned_cols=117  Identities=11%  Similarity=0.108  Sum_probs=70.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..++.+.        ++.       +..+|+..|+...          +. +..++.. .     .--
T Consensus        65 ~grVLDLGcGsGilsl~la--------~r~-------~~~~V~gVDisp~----------al-~~Ar~n~-~-----~v~  112 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCML--------HRC-------KPEKIVCVELNPE----------FA-RIGKRLL-P-----EAE  112 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHH--------HhC-------CCCEEEEEECCHH----------HH-HHHHHhC-c-----CCE
Confidence            3589999999998777655        331       3478999998653          11 1111111 0     112


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHH----HHH--HHHHHHhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ----FQR--DFSLFLKCR  204 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q----~~~--D~~~FL~~R  204 (269)
                      ++.   +++.... ++.++|+++|+-.++++.....                   .+.++.+    ..+  .+..||+..
T Consensus       113 ~v~---~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~-------------------~~~~~~~GG~~g~~~l~~~~~l~~v  169 (279)
T PHA03411        113 WIT---SDVFEFE-SNEKFDVVISNPPFGKINTTDT-------------------KDVFEYTGGEFEFKVMTLGQKFADV  169 (279)
T ss_pred             EEE---Cchhhhc-ccCCCcEEEEcCCccccCchhh-------------------hhhhhhccCccccccccHHHHHhhh
Confidence            333   6776543 4578999999888877532110                   0111110    011  257888888


Q ss_pred             hhhhccCCeEEEEecccC
Q 024331          205 SEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~~  222 (269)
                      +.-|+|+|...+.+-+++
T Consensus       170 ~~~L~p~G~~~~~yss~~  187 (279)
T PHA03411        170 GYFIVPTGSAGFAYSGRP  187 (279)
T ss_pred             HheecCCceEEEEEeccc
Confidence            889999998888876654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.79  E-value=0.002  Score=54.20  Aligned_cols=54  Identities=11%  Similarity=0.108  Sum_probs=40.4

Q ss_pred             CCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEE
Q 024331          136 PGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMV  215 (269)
Q Consensus       136 pgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  215 (269)
                      -|+..+.+++++++|++++++++||+.+                  +..+.++.               .+.|||||.++
T Consensus        32 ~~d~~~lp~~~~~fD~v~~~~~l~~~~d------------------~~~~l~ei---------------~rvLkpGG~l~   78 (160)
T PLN02232         32 EGDAIDLPFDDCEFDAVTMGYGLRNVVD------------------RLRAMKEM---------------YRVLKPGSRVS   78 (160)
T ss_pred             EechhhCCCCCCCeeEEEecchhhcCCC------------------HHHHHHHH---------------HHHcCcCeEEE
Confidence            3788999999999999999999999632                  11122222               56677999999


Q ss_pred             EEecccC
Q 024331          216 LTFLGRK  222 (269)
Q Consensus       216 ~~~~g~~  222 (269)
                      +..++..
T Consensus        79 i~d~~~~   85 (160)
T PLN02232         79 ILDFNKS   85 (160)
T ss_pred             EEECCCC
Confidence            9877654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.78  E-value=0.0027  Score=49.47  Aligned_cols=113  Identities=21%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      .+|+|.|||+|..++.+.        +..        ..+++..|+-.-     .-.+.  ...+. ..+...   +--+
T Consensus         2 ~~vlD~~~G~G~~~~~~~--------~~~--------~~~~~gvdi~~~-----~~~~a--~~~~~-~~~~~~---~~~~   54 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAAL--------RRG--------AARVTGVDIDPE-----AVELA--RRNLP-RNGLDD---RVEV   54 (117)
T ss_dssp             EEEEEETSTTCHHHHHHH--------HHC--------TCEEEEEESSHH-----HHHHH--HHHCH-HCTTTT---TEEE
T ss_pred             CEEEEcCcchHHHHHHHH--------HHC--------CCeEEEEEECHH-----HHHHH--HHHHH-HccCCc---eEEE
Confidence            589999999998877666        331        377888876432     11110  00011 111100   1233


Q ss_pred             EeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          132 FTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       132 ~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +.   +++....  ++++++|+++++         |+....       . ...     +.   -.++...|++.=.+-|+
T Consensus        55 ~~---~D~~~~~~~~~~~~~D~Iv~n---------pP~~~~-------~-~~~-----~~---~~~~~~~~~~~~~~~L~  106 (117)
T PF13659_consen   55 IV---GDARDLPEPLPDGKFDLIVTN---------PPYGPR-------S-GDK-----AA---LRRLYSRFLEAAARLLK  106 (117)
T ss_dssp             EE---SHHHHHHHTCTTT-EEEEEE-----------STTSB-------T-T------------GGCHHHHHHHHHHHHEE
T ss_pred             EE---CchhhchhhccCceeEEEEEC---------CCCccc-------c-ccc-----hh---hHHHHHHHHHHHHHHcC
Confidence            33   6665544  899999999993         222210       0 000     00   11144566666677788


Q ss_pred             cCCeEEEEec
Q 024331          210 AEGRMVLTFL  219 (269)
Q Consensus       210 pGG~lv~~~~  219 (269)
                      |||.+++.+.
T Consensus       107 ~gG~~~~~~~  116 (117)
T PF13659_consen  107 PGGVLVFITP  116 (117)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCeEEEEEeC
Confidence            9999999864

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.73  E-value=0.011  Score=55.57  Aligned_cols=77  Identities=13%  Similarity=0.102  Sum_probs=46.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh---cCC-CCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGS-ASG  125 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~---~~~-~~~  125 (269)
                      +..+|+|+|||+|..++.+.        ++         ..+|+..|+..+          ++.. .+++   .+. +.+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la--------~~---------g~~V~gvD~S~~----------ml~~-A~~~~~~~~~~~~~  195 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLA--------LE---------GAIVSASDISAA----------MVAE-AERRAKEALAALPP  195 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHH--------HC---------CCEEEEEECCHH----------HHHH-HHHHHHhccccccc
Confidence            35799999999999988777        32         257899998876          3211 1111   100 000


Q ss_pred             CCCceEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       126 ~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      .....|..   +++..   .++++|+++|+..+|+
T Consensus       196 ~~~~~f~~---~Dl~~---l~~~fD~Vv~~~vL~H  224 (315)
T PLN02585        196 EVLPKFEA---NDLES---LSGKYDTVTCLDVLIH  224 (315)
T ss_pred             ccceEEEE---cchhh---cCCCcCEEEEcCEEEe
Confidence            00113333   44432   2688999999988765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.72  E-value=0.0062  Score=60.72  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331           23 LVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF  102 (269)
Q Consensus        23 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF  102 (269)
                      ..|++.++...|.+.-....+..   .+.-.++|+|||.|..++.++        +.       .|+.-++..|.-.+  
T Consensus       323 ~~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A--------~~-------~p~~~~iGiE~~~~--  382 (506)
T PRK01544        323 GVQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQA--------KM-------NPDALFIGVEVYLN--  382 (506)
T ss_pred             HHHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHH--------Hh-------CCCCCEEEEEeeHH--
Confidence            37888888888877654433322   245789999999999988777        44       37888898888764  


Q ss_pred             HHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCc--cCCCCCCCceeeEeccccccc
Q 024331          103 NTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSF--YGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       103 ntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSF--y~~lfP~~Svd~~~Ss~alHW  160 (269)
                       .+-+.+.    +.. +.+  +   .++.+.  ++++  ....||++|||-+|-++.=-|
T Consensus       383 -~~~~~~~----~~~-~~~--l---~N~~~~--~~~~~~~~~~~~~~sv~~i~i~FPDPW  429 (506)
T PRK01544        383 -GVANVLK----LAG-EQN--I---TNFLLF--PNNLDLILNDLPNNSLDGIYILFPDPW  429 (506)
T ss_pred             -HHHHHHH----HHH-HcC--C---CeEEEE--cCCHHHHHHhcCcccccEEEEECCCCC
Confidence             2222221    111 112  2   355553  3444  467799999999999887777

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.012  Score=54.43  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc-e
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ-C  130 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~-~  130 (269)
                      +|+|+|||||.-++.++        ..+       |...|+..|+...          .+ +-.+.+. ..+.   .+ .
T Consensus       113 ~ilDlGTGSG~iai~la--------~~~-------~~~~V~a~Dis~~----------Al-~~A~~Na~~~~l---~~~~  163 (280)
T COG2890         113 RILDLGTGSGAIAIALA--------KEG-------PDAEVIAVDISPD----------AL-ALARENAERNGL---VRVL  163 (280)
T ss_pred             cEEEecCChHHHHHHHH--------hhC-------cCCeEEEEECCHH----------HH-HHHHHHHHHcCC---ccEE
Confidence            89999999999988887        543       6789999998764          11 1111111 1111   12 2


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES  170 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~  170 (269)
                      ++.   ++.+..+-.  .+|+++|         .|+.+..
T Consensus       164 ~~~---~dlf~~~~~--~fDlIVs---------NPPYip~  189 (280)
T COG2890         164 VVQ---SDLFEPLRG--KFDLIVS---------NPPYIPA  189 (280)
T ss_pred             EEe---eecccccCC--ceeEEEe---------CCCCCCC
Confidence            322   366665544  8999999         5777764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.69  E-value=0.013  Score=50.81  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++.++        +..      .+..+|+..|.-..
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a--------~~~------~~~~~v~avD~~~~   76 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEAS--------LLV------GETGKVYAVDKDEK   76 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHH--------HHh------CCCCEEEEEECCHH
Confidence            45799999999998888766        321      14578999998554

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=96.68  E-value=0.0045  Score=54.59  Aligned_cols=103  Identities=21%  Similarity=0.283  Sum_probs=61.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      .--+++|+|||.|..|..++        .+|         =.+...|....           -.+..+++.+. .   ++
T Consensus        43 ry~~alEvGCs~G~lT~~LA--------~rC---------d~LlavDis~~-----------Al~~Ar~Rl~~-~---~~   90 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLA--------PRC---------DRLLAVDISPR-----------ALARARERLAG-L---PH   90 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHG--------GGE---------EEEEEEES-HH-----------HHHHHHHHTTT-----SS
T ss_pred             ccceeEecCCCccHHHHHHH--------Hhh---------CceEEEeCCHH-----------HHHHHHHhcCC-C---CC
Confidence            34689999999999999888        776         35666665443           12234444432 1   22


Q ss_pred             --eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 --CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 --~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                        +-...+|.     ..|++++|+++-+=.+++|+..                              .|+..++..=.+-
T Consensus        91 V~~~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~~------------------------------~~L~~~l~~l~~~  135 (201)
T PF05401_consen   91 VEWIQADVPE-----FWPEGRFDLIVLSEVLYYLDDA------------------------------EDLRAALDRLVAA  135 (201)
T ss_dssp             EEEEES-TTT--------SS-EEEEEEES-GGGSSSH------------------------------HHHHHHHHHHHHT
T ss_pred             eEEEECcCCC-----CCCCCCeeEEEEehHhHcCCCH------------------------------HHHHHHHHHHHHH
Confidence              23333553     3699999999999888887541                              2444444444566


Q ss_pred             hccCCeEEEEec
Q 024331          208 LVAEGRMVLTFL  219 (269)
Q Consensus       208 L~pGG~lv~~~~  219 (269)
                      |+|||.||+...
T Consensus       136 L~pgG~LV~g~~  147 (201)
T PF05401_consen  136 LAPGGHLVFGHA  147 (201)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             hCCCCEEEEEEe
Confidence            889999999764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.67  E-value=0.01  Score=57.95  Aligned_cols=128  Identities=14%  Similarity=0.061  Sum_probs=68.1

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|.-|+.++        ++.      .+..+|+..|+..+       .+....+.+. +.|  .   .+ 
T Consensus       251 g~~VLDlgaG~G~~t~~la--------~~~------~~~~~v~avDi~~~-------~l~~~~~n~~-~~g--~---~~-  302 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIA--------ELL------KNTGKVVALDIHEH-------KLKLIEENAK-RLG--L---TN-  302 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEEeCCHH-------HHHHHHHHHH-HcC--C---Ce-
Confidence            4689999999999999777        432      13468999998665       1111111111 112  1   12 


Q ss_pred             EEeecCCCccCC--CCCCCceeeEecc---ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          131 FFTGVPGSFYGR--LFPRNSVHLFHSS---YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       131 f~~~vpgSFy~~--lfP~~Svd~~~Ss---~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                       +..+-+++...  .++ +++|++++-   +....+++.|....       .  . .+...+    ...+--..+|+.=.
T Consensus       303 -v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~--~-~~~~~~----~l~~~q~~iL~~a~  366 (444)
T PRK14902        303 -IETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------N--K-TKEDIE----SLQEIQLEILESVA  366 (444)
T ss_pred             -EEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhh-------c--C-CHHHHH----HHHHHHHHHHHHHH
Confidence             22333666443  244 789999872   22223333332111       0  0 111111    12222344555556


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+|+.++....
T Consensus       367 ~~LkpGG~lvystcs~~  383 (444)
T PRK14902        367 QYLKKGGILVYSTCTIE  383 (444)
T ss_pred             HHcCCCCEEEEEcCCCC
Confidence            67889999998876554

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.67  E-value=0.013  Score=52.83  Aligned_cols=35  Identities=29%  Similarity=0.493  Sum_probs=23.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++.+.        +.    +   + -+|+..|....
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~--------~~----g---~-~~v~giDis~~  153 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAA--------KL----G---A-KKVLAVDIDPQ  153 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHH--------Hc----C---C-CeEEEEECCHH
Confidence            45799999999997665433        22    1   2 25888887654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.61  E-value=0.015  Score=56.92  Aligned_cols=127  Identities=13%  Similarity=0.077  Sum_probs=69.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..|+.++        +...      +..+|+..|+...=       +....+.++ +.|  +   .+ 
T Consensus       251 g~~VLDlgaG~G~kt~~la--------~~~~------~~~~V~avD~s~~~-------l~~~~~~~~-~~g--~---~~-  302 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMA--------ELMQ------NRGQITAVDRYPQK-------LEKIRSHAS-ALG--I---TI-  302 (445)
T ss_pred             CCEEEEECCCCCHHHHHHH--------HHhC------CCcEEEEEECCHHH-------HHHHHHHHH-HhC--C---Ce-
Confidence            4689999999999998777        4321      23589999987761       111111111 112  1   12 


Q ss_pred             EEeecCCCccCCCCCCCceeeEec----cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHS----SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~S----s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                       +..+-++.... .|++++|.++.    +-+-+|- +-|...       |.  .++ +..    ++..+.-..+|+.=++
T Consensus       303 -v~~~~~Da~~~-~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~-------~~--~~~-~~~----~~l~~~q~~iL~~a~~  365 (445)
T PRK14904        303 -IETIEGDARSF-SPEEQPDAILLDAPCTGTGVLG-RRAELR-------WK--LTP-EKL----AELVGLQAELLDHAAS  365 (445)
T ss_pred             -EEEEeCccccc-ccCCCCCEEEEcCCCCCcchhh-cCcchh-------hc--CCH-HHH----HHHHHHHHHHHHHHHH
Confidence             22233555443 37788999984    1111121 112110       10  111 111    2233445567777677


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      -|+|||+|+.+++...
T Consensus       366 ~lkpgG~lvystcs~~  381 (445)
T PRK14904        366 LLKPGGVLVYATCSIE  381 (445)
T ss_pred             hcCCCcEEEEEeCCCC
Confidence            7889999999998775

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.54  E-value=0.021  Score=53.58  Aligned_cols=115  Identities=19%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|.|||+|..++...        .         ....++..|.-..   .    +......++ +.+  .   .+ 
T Consensus       183 g~~vLDp~cGtG~~lieaa--------~---------~~~~v~g~Di~~~---~----~~~a~~nl~-~~g--~---~~-  231 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAG--------L---------MGAKVIGCDIDWK---M----VAGARINLE-HYG--I---ED-  231 (329)
T ss_pred             cCEEEECCCCCCHHHHHHH--------H---------hCCeEEEEcCCHH---H----HHHHHHHHH-HhC--C---CC-
Confidence            4689999999997543222        1         1257888887543   0    111111111 112  1   12 


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                       +.-+-+++....++++++|++++.        .|-...     ......    .       ...-...+|+.=++.|+|
T Consensus       232 -i~~~~~D~~~l~~~~~~~D~Iv~d--------PPyg~~-----~~~~~~----~-------~~~l~~~~l~~~~r~Lk~  286 (329)
T TIGR01177       232 -FFVKRGDATKLPLSSESVDAIATD--------PPYGRS-----TTAAGD----G-------LESLYERSLEEFHEVLKS  286 (329)
T ss_pred             -CeEEecchhcCCcccCCCCEEEEC--------CCCcCc-----ccccCC----c-------hHHHHHHHHHHHHHHccC
Confidence             122347888888888999999992        221111     000000    0       011123444444567889


Q ss_pred             CCeEEEEeccc
Q 024331          211 EGRMVLTFLGR  221 (269)
Q Consensus       211 GG~lv~~~~g~  221 (269)
                      ||++++.+...
T Consensus       287 gG~lv~~~~~~  297 (329)
T TIGR01177       287 EGWIVYAVPTR  297 (329)
T ss_pred             CcEEEEEEcCC
Confidence            99999988654

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.53  E-value=0.02  Score=53.56  Aligned_cols=100  Identities=21%  Similarity=0.321  Sum_probs=59.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ++.+++|+|||||--|+..+        +.    |    ...|+..|+-.-          .... .+.+. -++.   .
T Consensus       162 ~g~~vlDvGcGSGILaIAa~--------kL----G----A~~v~g~DiDp~----------AV~a-a~eNa~~N~v---~  211 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAA--------KL----G----AKKVVGVDIDPQ----------AVEA-ARENARLNGV---E  211 (300)
T ss_pred             CCCEEEEecCChhHHHHHHH--------Hc----C----CceEEEecCCHH----------HHHH-HHHHHHHcCC---c
Confidence            57899999999998887665        32    2    356888886443          1111 11111 1111   1


Q ss_pred             ceEEeecCCCccCCCCCCC-ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRN-SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~-Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      . .+  --..|+..-+|.+ .+|+++.+                   |.          +.--.+...|+...|+     
T Consensus       212 ~-~~--~~~~~~~~~~~~~~~~DvIVAN-------------------IL----------A~vl~~La~~~~~~lk-----  254 (300)
T COG2264         212 L-LV--QAKGFLLLEVPENGPFDVIVAN-------------------IL----------AEVLVELAPDIKRLLK-----  254 (300)
T ss_pred             h-hh--hcccccchhhcccCcccEEEeh-------------------hh----------HHHHHHHHHHHHHHcC-----
Confidence            1 11  1145677778885 99999982                   21          1222345566666655     


Q ss_pred             hccCCeEEEEe
Q 024331          208 LVAEGRMVLTF  218 (269)
Q Consensus       208 L~pGG~lv~~~  218 (269)
                        |||++++|-
T Consensus       255 --pgg~lIlSG  263 (300)
T COG2264         255 --PGGRLILSG  263 (300)
T ss_pred             --CCceEEEEe
Confidence              999999975

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.53  E-value=0.0058  Score=53.45  Aligned_cols=80  Identities=24%  Similarity=0.431  Sum_probs=48.4

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF  132 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~  132 (269)
                      .++|+|||.|...+.++        +.       .|+..++..|.-.+   .+.+.+    .+..+. +.     .++.+
T Consensus        20 l~lEIG~G~G~~l~~~A--------~~-------~Pd~n~iGiE~~~~---~v~~a~----~~~~~~-~l-----~Nv~~   71 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELA--------KR-------NPDINFIGIEIRKK---RVAKAL----RKAEKR-GL-----KNVRF   71 (195)
T ss_dssp             EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEES-HH---HHHHHH----HHHHHH-TT-----SSEEE
T ss_pred             eEEEecCCCCHHHHHHH--------HH-------CCCCCEEEEecchH---HHHHHH----HHHHhh-cc-----cceEE
Confidence            99999999999988777        54       37899999998665   222211    112211 22     35544


Q ss_pred             e-ecCCCccCCCCCCCceeeEeccccccc
Q 024331          133 T-GVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       133 ~-~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      . +=...+...++|++||+-++=.+-=-|
T Consensus        72 ~~~da~~~l~~~~~~~~v~~i~i~FPDPW  100 (195)
T PF02390_consen   72 LRGDARELLRRLFPPGSVDRIYINFPDPW  100 (195)
T ss_dssp             EES-CTTHHHHHSTTTSEEEEEEES----
T ss_pred             EEccHHHHHhhcccCCchheEEEeCCCCC
Confidence            4 333445667899999999988665555

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.51  E-value=0.019  Score=52.00  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +.+|+|+|||+|..++.+.        +.+       |..+|+..|....
T Consensus        87 ~~~vLDlg~GsG~i~l~la--------~~~-------~~~~v~~vDis~~  121 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALA--------AAL-------DGIELHAADIDPA  121 (251)
T ss_pred             CCEEEEecCchHHHHHHHH--------HhC-------CCCEEEEEECCHH
Confidence            4689999999999988777        432       4578999997543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.47  E-value=0.031  Score=51.89  Aligned_cols=153  Identities=18%  Similarity=0.161  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331           34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ  113 (269)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~  113 (269)
                      .+++..++++.....-+.-.|+|+|||+|+-|+.++        .       ..|...|+..|...-=-    ++--.+.
T Consensus       132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll--------~-------~L~~~~v~AiD~S~~Ai----~La~eN~  192 (328)
T KOG2904|consen  132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLL--------H-------GLPQCTVTAIDVSKAAI----KLAKENA  192 (328)
T ss_pred             HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHH--------h-------cCCCceEEEEeccHHHH----HHHHHHH
Confidence            344444444432222234589999999999999887        3       33578888888876511    0000011


Q ss_pred             HHHHHhcCCCCCCCCceEEe--ecCCCccCCC-CCCCceeeEeccccccccccCCCCCCC--CCcc-eEEcCCCCHHHHH
Q 024331          114 KILRKQLGSASGAAGQCFFT--GVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLES--NKGN-IFMASTSPPCVLT  187 (269)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~--~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~--nkg~-i~~~~~s~~~v~~  187 (269)
                      +.+.  ..      +.+-+.  -.-++-|... .+.+.+|++.|         .|+.+.+  +.+- .-+..-++.-+..
T Consensus       193 qr~~--l~------g~i~v~~~~me~d~~~~~~l~~~~~dllvs---------NPPYI~~dD~~~l~~eV~~yEp~lALd  255 (328)
T KOG2904|consen  193 QRLK--LS------GRIEVIHNIMESDASDEHPLLEGKIDLLVS---------NPPYIRKDDNRQLKPEVRLYEPKLALD  255 (328)
T ss_pred             HHHh--hc------CceEEEecccccccccccccccCceeEEec---------CCCcccccchhhcCchheecCchhhhc
Confidence            1111  00      122222  1124444443 88999999999         4766653  1100 0000001110000


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331          188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~  223 (269)
                      .= .-.-.-+.+|+..-.|-|+|||.+.+.+.++..
T Consensus       256 Gg-~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~  290 (328)
T KOG2904|consen  256 GG-LEGYDNLVHYWLLATRMLQPGGFEQLELVERKE  290 (328)
T ss_pred             cc-cchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence            00 002244566777778889999999999988854

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.47  E-value=0.013  Score=55.57  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~  126 (269)
                      ...+|+|+|||-|.-..            +|...    ..-.++..|+...       ++..-.+.+.+   +.....  
T Consensus        62 ~~~~VLDl~CGkGGDL~------------Kw~~~----~i~~~vg~Dis~~-------si~ea~~Ry~~~~~~~~~~~--  116 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQ------------KWQKA----KIKHYVGIDISEE-------SIEEARERYKQLKKRNNSKQ--  116 (331)
T ss_dssp             TT-EEEEET-TTTTTHH------------HHHHT----T-SEEEEEES-HH-------HHHHHHHHHHHHHTSTT-HT--
T ss_pred             CCCeEEEecCCCchhHH------------HHHhc----CCCEEEEEeCCHH-------HHHHHHHHHHHhcccccccc--
Confidence            57999999999998743            22111    2356777887554       12222222311   100000  


Q ss_pred             CCceEEe-ecCCCccC----CCCCCC--ceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHH
Q 024331          127 AGQCFFT-GVPGSFYG----RLFPRN--SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSL  199 (269)
Q Consensus       127 ~~~~f~~-~vpgSFy~----~lfP~~--Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~  199 (269)
                      ....|.+ -+.++-+.    ..+++.  .+|++-+-+|||..=.                 +            ++-.+.
T Consensus       117 ~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe-----------------s------------e~~ar~  167 (331)
T PF03291_consen  117 YRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFE-----------------S------------EEKARQ  167 (331)
T ss_dssp             SEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS-----------------S------------HHHHHH
T ss_pred             ccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcC-----------------C------------HHHHHH
Confidence            0001111 12243332    245554  9999999999999322                 1            123345


Q ss_pred             HHhhhhhhhccCCeEEEEec
Q 024331          200 FLKCRSEELVAEGRMVLTFL  219 (269)
Q Consensus       200 FL~~Ra~EL~pGG~lv~~~~  219 (269)
                      ||+.=++=|+|||+++.+++
T Consensus       168 ~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  168 FLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             HHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEEEec
Confidence            66666777779999999987

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.29  E-value=0.027  Score=53.67  Aligned_cols=149  Identities=21%  Similarity=0.264  Sum_probs=88.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +...|+|.|||+|.-|+..++.=                .-.||...- +|        +..+.+++..  +..+    .
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEA-S~--------MAqyA~~Lv~--~N~~----~  225 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEA-SE--------MAQYARKLVA--SNNL----A  225 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC----------------cceEEEEeh-hH--------HHHHHHHHHh--cCCc----c
Confidence            35689999999999998877221                133443331 12        3333333322  2222    4


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      -.|..+||--.+--+|+. +|+++|         -|-      |.+            .|   -++=+.++|.+| +=|+
T Consensus       226 ~rItVI~GKiEdieLPEk-~DviIS---------EPM------G~m------------L~---NERMLEsYl~Ar-k~l~  273 (517)
T KOG1500|consen  226 DRITVIPGKIEDIELPEK-VDVIIS---------EPM------GYM------------LV---NERMLESYLHAR-KWLK  273 (517)
T ss_pred             ceEEEccCccccccCchh-ccEEEe---------ccc------hhh------------hh---hHHHHHHHHHHH-hhcC
Confidence            577889999999888864 899998         121      111            22   346688899999 9999


Q ss_pred             cCCeEEEEecccCCCCCCChhh--------hHHH------HHHHHHHHHHHHccCcccccccceecc
Q 024331          210 AEGRMVLTFLGRKSQDPSSKEC--------CYIW------ELLATALNNMVSEVTKSFLLLIVFNQL  262 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~--------~~~~------~~l~~~l~~mv~eG~i~~~~~d~FnlP  262 (269)
                      |.|.|+=++ |+-.--|.+.|.        ..||      +.=-..|..=+-+|+.++-.+|+|.+-
T Consensus       274 P~GkMfPT~-gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~R  339 (517)
T KOG1500|consen  274 PNGKMFPTV-GDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIR  339 (517)
T ss_pred             CCCcccCcc-cceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccc
Confidence            999997654 443222333221        1123      111123344455677888888888753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.28  E-value=0.027  Score=52.61  Aligned_cols=69  Identities=26%  Similarity=0.384  Sum_probs=43.7

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc-
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ-  129 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~-  129 (269)
                      -+|||+|||-|.-++.++        ++.       |+.++.+.|.-   +    +.+.    +.+... ..+.   .+ 
T Consensus       160 ~~vlDlGCG~Gvlg~~la--------~~~-------p~~~vtmvDvn---~----~Av~----~ar~Nl~~N~~---~~~  210 (300)
T COG2813         160 GKVLDLGCGYGVLGLVLA--------KKS-------PQAKLTLVDVN---A----RAVE----SARKNLAANGV---ENT  210 (300)
T ss_pred             CcEEEeCCCccHHHHHHH--------HhC-------CCCeEEEEecC---H----HHHH----HHHHhHHHcCC---Ccc
Confidence            399999999999988777        553       78999999963   3    1121    122211 1111   12 


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      ....   .+-|..+..  ++|+++|
T Consensus       211 ~v~~---s~~~~~v~~--kfd~Iis  230 (300)
T COG2813         211 EVWA---SNLYEPVEG--KFDLIIS  230 (300)
T ss_pred             EEEE---ecccccccc--cccEEEe
Confidence            2222   566777666  9999999

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.24  E-value=0.0064  Score=56.34  Aligned_cols=135  Identities=17%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             hHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecC
Q 024331           17 SYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND   96 (269)
Q Consensus        17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nD   96 (269)
                      -|++.+..=...-....|+..+.+..     .+....++|.|||.|.-..                   ..|-.-++..|
T Consensus        17 IYd~ia~~fs~tr~~~Wp~v~qfl~~-----~~~gsv~~d~gCGngky~~-------------------~~p~~~~ig~D   72 (293)
T KOG1331|consen   17 IYDKIATHFSATRAAPWPMVRQFLDS-----QPTGSVGLDVGCGNGKYLG-------------------VNPLCLIIGCD   72 (293)
T ss_pred             HHHHhhhhccccccCccHHHHHHHhc-----cCCcceeeecccCCcccCc-------------------CCCcceeeecc
Confidence            35555554233333345566665543     3346899999999984321                   22557778888


Q ss_pred             CCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceE
Q 024331           97 LPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIF  176 (269)
Q Consensus        97 LP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~  176 (269)
                      +-.-        |-.    ..++.|.+    .-++     .+.-..++++.|+|.+.|...+||||.--           
T Consensus        73 ~c~~--------l~~----~ak~~~~~----~~~~-----ad~l~~p~~~~s~d~~lsiavihhlsT~~-----------  120 (293)
T KOG1331|consen   73 LCTG--------LLG----GAKRSGGD----NVCR-----ADALKLPFREESFDAALSIAVIHHLSTRE-----------  120 (293)
T ss_pred             hhhh--------hcc----ccccCCCc----eeeh-----hhhhcCCCCCCccccchhhhhhhhhhhHH-----------
Confidence            7654        211    11111110    0122     56678999999999999999999987521           


Q ss_pred             EcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCC
Q 024331          177 MASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDP  226 (269)
Q Consensus       177 ~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~  226 (269)
                          -+..+.+++               .++++|||.+.+..-+.....+
T Consensus       121 ----RR~~~l~e~---------------~r~lrpgg~~lvyvwa~~q~~~  151 (293)
T KOG1331|consen  121 ----RRERALEEL---------------LRVLRPGGNALVYVWALEQHQS  151 (293)
T ss_pred             ----HHHHHHHHH---------------HHHhcCCCceEEEEehhhccCc
Confidence                133344455               7789999999998877765433

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.17  E-value=0.059  Score=50.86  Aligned_cols=78  Identities=13%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|.+++.+.        +.+.      +.-+|+..|.... .      +..-++.+. +.+..    .-
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA--------~~~~------~~g~VvgVDis~~-~------l~~Ar~~l~-~~g~~----nV  133 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMS--------RVVG------EKGLVVSVEYSRK-I------CEIAKRNVR-RLGIE----NV  133 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHH--------HhcC------CCCEEEEEECCHH-H------HHHHHHHHH-HcCCC----cE
Confidence            34799999999999998877        4431      1235777776543 0      111111111 11210    11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSY  156 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~  156 (269)
                      .++   -|+....+.+.+++|++++..
T Consensus       134 ~~i---~gD~~~~~~~~~~fD~Ii~~~  157 (322)
T PRK13943        134 IFV---CGDGYYGVPEFAPYDVIFVTV  157 (322)
T ss_pred             EEE---eCChhhcccccCCccEEEECC
Confidence            333   367766666667899998843

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.16  E-value=0.015  Score=50.24  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ..-+|+|+|||+|..++.+.        +..       |..+|+..|+-.
T Consensus        40 ~~~~VLDiG~G~G~~~~~la--------~~~-------~~~~V~~vD~s~   74 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAG--------LLC-------PKGRVIAIERDE   74 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHC-------CCCEEEEEeCCH
Confidence            34699999999999888665        331       457899998754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.15  E-value=0.034  Score=50.67  Aligned_cols=128  Identities=11%  Similarity=0.031  Sum_probs=67.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|.-|+.+.        +...      +.-.|+..|.-..=.       ....+.++ +.|  .   .++
T Consensus        72 g~~VLDl~ag~G~kt~~la--------~~~~------~~g~v~a~D~~~~~l-------~~~~~n~~-~~g--~---~~v  124 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQIS--------ALMK------NEGAIVANEFSKSRT-------KVLIANIN-RCG--V---LNV  124 (264)
T ss_pred             cCEEEEECCCchHHHHHHH--------HHcC------CCCEEEEEcCCHHHH-------HHHHHHHH-HcC--C---CcE
Confidence            4689999999999998877        4321      234789999766511       11111111 112  1   122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHH----HHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL----TAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~----~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      -+  +-++......+.+++|.++.        +.|+.-.   |.+.  +  .|+..    +.-..+..+.-..+|+.=.+
T Consensus       125 ~~--~~~D~~~~~~~~~~fD~Vl~--------D~Pcsg~---G~~~--~--~p~~~~~~~~~~~~~l~~~q~~iL~~a~~  187 (264)
T TIGR00446       125 AV--TNFDGRVFGAAVPKFDAILL--------DAPCSGE---GVIR--K--DPSRKKNWSEEDIQEISALQKELIDSAFD  187 (264)
T ss_pred             EE--ecCCHHHhhhhccCCCEEEE--------cCCCCCC---cccc--c--ChhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            22  22333222234456888886        4444311   1110  0  01110    01112233444557776677


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      -|+|||+|+.++....
T Consensus       188 ~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       188 ALKPGGVLVYSTCSLE  203 (264)
T ss_pred             hcCCCCEEEEEeCCCC
Confidence            7889999999887654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.14  E-value=0.07  Score=46.71  Aligned_cols=119  Identities=21%  Similarity=0.200  Sum_probs=69.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+++|+|||||.-|+..+        ..       .|.-+||.-|--.-=.    +.+..+    .++.|  .   ++
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a--------~~-------~p~~~v~AIe~~~~a~----~~~~~N----~~~fg--~---~n   85 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWA--------LA-------GPSGRVIAIERDEEAL----ELIERN----AARFG--V---DN   85 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHH--------Hh-------CCCceEEEEecCHHHH----HHHHHH----HHHhC--C---Cc
Confidence            35699999999999888666        33       2678888888543311    111110    01111  1   34


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCC-HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP-PCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~-~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +.+.  -|+.+.-|-                  +.|.     .++|+|.++.. +.+.+++               .+-|
T Consensus        86 ~~vv--~g~Ap~~L~------------------~~~~-----~daiFIGGg~~i~~ile~~---------------~~~l  125 (187)
T COG2242          86 LEVV--EGDAPEALP------------------DLPS-----PDAIFIGGGGNIEEILEAA---------------WERL  125 (187)
T ss_pred             EEEE--eccchHhhc------------------CCCC-----CCEEEECCCCCHHHHHHHH---------------HHHc
Confidence            4433  244443222                  3331     36777777643 4455555               5567


Q ss_pred             ccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccC
Q 024331          209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVT  250 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~  250 (269)
                      +|||++|+.....              +.+..++..|.+-|.
T Consensus       126 ~~ggrlV~naitl--------------E~~~~a~~~~~~~g~  153 (187)
T COG2242         126 KPGGRLVANAITL--------------ETLAKALEALEQLGG  153 (187)
T ss_pred             CcCCeEEEEeecH--------------HHHHHHHHHHHHcCC
Confidence            8999999977433              356677777888776

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.03  E-value=0.059  Score=50.87  Aligned_cols=69  Identities=13%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +...+|+|+|||+|.-+-.+++.+.    +.       ...+..+-.|+...          .+.....+-.-..+   +
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~----~~-------~~~~~Y~plDIS~~----------~L~~a~~~L~~~~~---p  130 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALE----RQ-------KKSVDYYALDVSRS----------ELQRTLAELPLGNF---S  130 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHH----hc-------CCCceEEEEECCHH----------HHHHHHHhhhhccC---C
Confidence            3456899999999999888875442    21       12488899999875          22222211110123   4


Q ss_pred             ceEEeecCCCccC
Q 024331          129 QCFFTGVPGSFYG  141 (269)
Q Consensus       129 ~~f~~~vpgSFy~  141 (269)
                      .+-+.++.|+|..
T Consensus       131 ~l~v~~l~gdy~~  143 (319)
T TIGR03439       131 HVRCAGLLGTYDD  143 (319)
T ss_pred             CeEEEEEEecHHH
Confidence            5777788888866

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=95.98  E-value=0.046  Score=46.05  Aligned_cols=71  Identities=13%  Similarity=0.109  Sum_probs=44.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..|..++        ++         ..+|+..|+... +          .+.++++... .   .++
T Consensus        14 ~~~vLEiG~G~G~lt~~l~--------~~---------~~~v~~vE~~~~-~----------~~~~~~~~~~-~---~~v   61 (169)
T smart00650       14 GDTVLEIGPGKGALTEELL--------ER---------AARVTAIEIDPR-L----------APRLREKFAA-A---DNL   61 (169)
T ss_pred             cCEEEEECCCccHHHHHHH--------hc---------CCeEEEEECCHH-H----------HHHHHHHhcc-C---CCE
Confidence            4689999999999998877        32         146777776643 1          1112222111 0   122


Q ss_pred             EEeecCCCccCCCCCCCceeeEecc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                        ..+-+++....+++.+.|.++|+
T Consensus        62 --~ii~~D~~~~~~~~~~~d~vi~n   84 (169)
T smart00650       62 --TVIHGDALKFDLPKLQPYKVVGN   84 (169)
T ss_pred             --EEEECchhcCCccccCCCEEEEC
Confidence              12348898888888888999884

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.98  E-value=0.021  Score=50.21  Aligned_cols=75  Identities=17%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||.|..-.        .+++.        ..++.+.-++-.-   .+-+        ..+ .|  .    ++
T Consensus        14 gsrVLDLGCGdG~LL~--------~L~~~--------k~v~g~GvEid~~---~v~~--------cv~-rG--v----~V   59 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLA--------YLKDE--------KQVDGYGVEIDPD---NVAA--------CVA-RG--V----SV   59 (193)
T ss_pred             CCEEEecCCCchHHHH--------HHHHh--------cCCeEEEEecCHH---HHHH--------HHH-cC--C----CE
Confidence            4899999999996432        22232        3567777764321   1111        111 12  1    22


Q ss_pred             EEeecCCCccCC--CCCCCceeeEecccccccccc
Q 024331          131 FFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       131 f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWLS~  163 (269)
                          +-++...-  -||++|+|.++-+-+||=+.+
T Consensus        60 ----iq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~   90 (193)
T PF07021_consen   60 ----IQGDLDEGLADFPDQSFDYVILSQTLQAVRR   90 (193)
T ss_pred             ----EECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence                22555553  399999999999888887543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=95.88  E-value=0.042  Score=48.74  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=15.9

Q ss_pred             CceEEEeecCCCCcccHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      ...+|+|+|||+|++|..+.
T Consensus        72 pg~~VLeIGtGsGY~aAlla   91 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLA   91 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHH
Confidence            35899999999999998777

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=95.84  E-value=0.0017  Score=58.05  Aligned_cols=103  Identities=24%  Similarity=0.336  Sum_probs=58.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC---CCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS---ASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~---~~~~  126 (269)
                      +.-+.+|.|+|-|+-|-.++.                 |.|+  ..|+-.  .      .+.|.+.++...+.   +.  
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl-----------------~~f~--~VDlVE--p------~~~Fl~~a~~~l~~~~~~v--  105 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLL-----------------PVFD--EVDLVE--P------VEKFLEQAKEYLGKDNPRV--  105 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCC-----------------CC-S--EEEEEE--S-------HHHHHHHHHHTCCGGCCE--
T ss_pred             CcceEEecccccchhHHHHHH-----------------HhcC--EeEEec--c------CHHHHHHHHHHhcccCCCc--
Confidence            567999999999988765441                 1111  112211  1      23444444433322   22  


Q ss_pred             CCceEEeecCCCccCCCCCC-CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          127 AGQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                       ..+|.++.- +|    -|+ +..|++|.=|++..|.+                               .|+-.||+-=.
T Consensus       106 -~~~~~~gLQ-~f----~P~~~~YDlIW~QW~lghLTD-------------------------------~dlv~fL~RCk  148 (218)
T PF05891_consen  106 -GEFYCVGLQ-DF----TPEEGKYDLIWIQWCLGHLTD-------------------------------EDLVAFLKRCK  148 (218)
T ss_dssp             -EEEEES-GG-G--------TT-EEEEEEES-GGGS-H-------------------------------HHHHHHHHHHH
T ss_pred             -ceEEecCHh-hc----cCCCCcEeEEEehHhhccCCH-------------------------------HHHHHHHHHHH
Confidence             356666433 22    354 79999999776666533                               78999999888


Q ss_pred             hhhccCCeEEEEe
Q 024331          206 EELVAEGRMVLTF  218 (269)
Q Consensus       206 ~EL~pGG~lv~~~  218 (269)
                      +-|+|||.+++=-
T Consensus       149 ~~L~~~G~IvvKE  161 (218)
T PF05891_consen  149 QALKPNGVIVVKE  161 (218)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HhCcCCcEEEEEe
Confidence            8899999999853

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=95.70  E-value=0.038  Score=52.51  Aligned_cols=105  Identities=21%  Similarity=0.330  Sum_probs=71.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.-+|+|.|||||--|+..+        +.    |    ...|+..     |++.+..    ...++-..++  +    .
T Consensus        60 ~dK~VlDVGcGtGILS~F~a--------kA----G----A~~V~aV-----e~S~ia~----~a~~iv~~N~--~----~  108 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAA--------KA----G----ARKVYAV-----EASSIAD----FARKIVKDNG--L----E  108 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHH--------Hh----C----cceEEEE-----echHHHH----HHHHHHHhcC--c----c
Confidence            46799999999999988777        33    1    2445555     3444432    2222322222  2    2


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .-+.-+.|.-.+..+|...||++.|-|.=+||                              -++.=+...|-+|-+=|+
T Consensus       109 ~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L------------------------------l~EsMldsVl~ARdkwL~  158 (346)
T KOG1499|consen  109 DVITVIKGKVEDIELPVEKVDIIVSEWMGYFL------------------------------LYESMLDSVLYARDKWLK  158 (346)
T ss_pred             ceEEEeecceEEEecCccceeEEeehhhhHHH------------------------------HHhhhhhhhhhhhhhccC
Confidence            34455778889999999999999995554443                              245667788899999999


Q ss_pred             cCCeEE
Q 024331          210 AEGRMV  215 (269)
Q Consensus       210 pGG~lv  215 (269)
                      |||+++
T Consensus       159 ~~G~i~  164 (346)
T KOG1499|consen  159 EGGLIY  164 (346)
T ss_pred             CCceEc
Confidence            999986

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.69  E-value=0.04  Score=49.56  Aligned_cols=135  Identities=9%  Similarity=-0.023  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHH
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS  111 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~  111 (269)
                      ..|.|.+-+.++.   .++.-+|++.|||.|.+...++        ++         -.+|+..|+...==...|+....
T Consensus        28 pnp~L~~~~~~l~---~~~~~rvLvPgCGkg~D~~~LA--------~~---------G~~V~GvDlS~~Ai~~~~~e~~~   87 (226)
T PRK13256         28 PNEFLVKHFSKLN---INDSSVCLIPMCGCSIDMLFFL--------SK---------GVKVIGIELSEKAVLSFFSQNTI   87 (226)
T ss_pred             CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------hC---------CCcEEEEecCHHHHHHHHHHcCC
Confidence            3455544444332   2245799999999999999888        43         37899999877622222221100


Q ss_pred             HHHHHHHh-cCCCCCCCCceEEeecCCCccCCCCCC---CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHH
Q 024331          112 FQKILRKQ-LGSASGAAGQCFFTGVPGSFYGRLFPR---NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLT  187 (269)
Q Consensus       112 ~~~~~~~~-~~~~~~~~~~~f~~~vpgSFy~~lfP~---~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~  187 (269)
                      ... ..+. ....+   ...-+.-+-|+|++...+.   +.+|+++=..+|+=|                    +++.+.
T Consensus        88 ~~~-~~~~~~~~~~---~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al--------------------pp~~R~  143 (226)
T PRK13256         88 NYE-VIHGNDYKLY---KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL--------------------PNDLRT  143 (226)
T ss_pred             Ccc-eeccccccee---ccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC--------------------CHHHHH
Confidence            000 0000 00000   0111223348999864322   578998887777654                    334455


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331          188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       188 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      .|++    .+.+.       |+|||.+++.++-.
T Consensus       144 ~Y~~----~l~~l-------L~pgg~llll~~~~  166 (226)
T PRK13256        144 NYAK----MMLEV-------CSNNTQILLLVMEH  166 (226)
T ss_pred             HHHH----HHHHH-------hCCCcEEEEEEEec
Confidence            6654    33444       45999999998854

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.62  E-value=0.063  Score=51.06  Aligned_cols=142  Identities=19%  Similarity=0.263  Sum_probs=89.3

Q ss_pred             ccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCC
Q 024331            9 MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLP   88 (269)
Q Consensus         9 M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p   88 (269)
                      |-||-|..+|.-+-.+|+. +.....++.+.+.+.+.. +...-..+|.|-|.|+.+-.++        ..|       |
T Consensus       138 ~l~~~~~~~~~~~~~~~~s-m~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll--------~~f-------p  200 (342)
T KOG3178|consen  138 MLGGYGGADERFSKDFNGS-MSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLL--------SKY-------P  200 (342)
T ss_pred             hhhhhcccccccHHHHHHH-HHHHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHH--------HhC-------C
Confidence            5666555555444444432 222333333333333332 3446789999999998877666        444       6


Q ss_pred             cceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEecccccc-ccccCCCC
Q 024331           89 EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDG  167 (269)
Q Consensus        89 ~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~  167 (269)
                      .+..+=-|+|.=        +.     .....+.     +   |.-+.|++++- .|++-  ++|--|.|| |       
T Consensus       201 ~ik~infdlp~v--------~~-----~a~~~~~-----g---V~~v~gdmfq~-~P~~d--aI~mkWiLhdw-------  249 (342)
T KOG3178|consen  201 HIKGINFDLPFV--------LA-----AAPYLAP-----G---VEHVAGDMFQD-TPKGD--AIWMKWILHDW-------  249 (342)
T ss_pred             CCceeecCHHHH--------Hh-----hhhhhcC-----C---cceeccccccc-CCCcC--eEEEEeecccC-------
Confidence            677776666543        10     1100001     1   33455999999 89886  899888887 5       


Q ss_pred             CCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331          168 LESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       168 l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~  223 (269)
                                               -.+|+.+||+.=.+=|+|||.+++.-.-.++
T Consensus       250 -------------------------tDedcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  250 -------------------------TDEDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             -------------------------ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence                                     1278999999889999999999999875443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.55  E-value=0.091  Score=49.06  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=23.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||||--++..+        +.    |    .-+|+..|.-..
T Consensus       162 g~~vLDvG~GSGILaiaA~--------kl----G----A~~v~a~DiDp~  195 (295)
T PF06325_consen  162 GKRVLDVGCGSGILAIAAA--------KL----G----AKKVVAIDIDPL  195 (295)
T ss_dssp             TSEEEEES-TTSHHHHHHH--------HT----T----BSEEEEEESSCH
T ss_pred             CCEEEEeCCcHHHHHHHHH--------Hc----C----CCeEEEecCCHH
Confidence            4699999999998877655        32    2    246889986443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=95.35  E-value=0.051  Score=53.15  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      ..+|+|+|||+|..|+.++        +..         .+|+..|....          +... ++++. ..+.  ..-
T Consensus       298 ~~~VLDlgcGtG~~sl~la--------~~~---------~~V~gvD~s~~----------al~~-A~~n~~~~~~--~~v  347 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLA--------RQA---------AEVVGVEGVEA----------MVER-ARENARRNGL--DNV  347 (443)
T ss_pred             CCEEEEEeccCCHHHHHHH--------HhC---------CEEEEEeCCHH----------HHHH-HHHHHHHcCC--Cce
Confidence            4699999999999988776        331         46888887654          2211 21111 1111  011


Q ss_pred             eEEeecCCCccC----CCCCCCceeeEecc-------ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHH
Q 024331          130 CFFTGVPGSFYG----RLFPRNSVHLFHSS-------YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFS  198 (269)
Q Consensus       130 ~f~~~vpgSFy~----~lfP~~Svd~~~Ss-------~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~  198 (269)
                      -|+.   +++..    ..++++++|++++.       -.++||.++.+     ++-||++.. |.        -+.+|+.
T Consensus       348 ~~~~---~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~-----~~ivyvSCn-p~--------tlaRDl~  410 (443)
T PRK13168        348 TFYH---ANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGP-----KRIVYVSCN-PA--------TLARDAG  410 (443)
T ss_pred             EEEE---eChHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCC-----CeEEEEEeC-hH--------HhhccHH
Confidence            3333   55543    23567789999963       45577766422     466888763 21        1678998


Q ss_pred             HHHh
Q 024331          199 LFLK  202 (269)
Q Consensus       199 ~FL~  202 (269)
                      .+.+
T Consensus       411 ~L~~  414 (443)
T PRK13168        411 VLVE  414 (443)
T ss_pred             HHhh
Confidence            8864

>PLN02672 methionine S-methyltransferase

Probab=95.30  E-value=0.043  Score=59.31  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|.-++.+.        +.+       |..+|+..|+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La--------~~~-------~~~~v~avDis~~  153 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIA--------EKW-------LPSKVYGLDINPR  153 (1082)
T ss_pred             CCEEEEEecchHHHHHHHH--------HHC-------CCCEEEEEECCHH
Confidence            3589999999999999887        543       4579999998776

>PRK00811 spermidine synthase; Provisional

Probab=95.29  E-value=0.11  Score=47.85  Aligned_cols=38  Identities=16%  Similarity=0.130  Sum_probs=26.6

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .+++.+|+|+|||+|..+..++        ++       ++.-+|...|+-..
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l--------~~-------~~~~~V~~VEid~~  111 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVL--------KH-------PSVEKITLVEIDER  111 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHH--------cC-------CCCCEEEEEeCCHH
Confidence            3567899999999998876555        32       12346778877654

>PRK03612 spermidine synthase; Provisional

Probab=95.17  E-value=0.12  Score=51.87  Aligned_cols=50  Identities=10%  Similarity=-0.016  Sum_probs=30.4

Q ss_pred             hhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccccccc
Q 024331          206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      +-|+|||++++....     +.. .    -+.+..+.+.|.+.|.  .-.-.+.++|-|.+|
T Consensus       403 ~~L~pgG~lv~~~~~-----~~~-~----~~~~~~i~~~l~~~gf--~v~~~~~~vps~g~w  452 (521)
T PRK03612        403 RRLAPDGLLVVQSTS-----PYF-A----PKAFWSIEATLEAAGL--ATTPYHVNVPSFGEW  452 (521)
T ss_pred             HhcCCCeEEEEecCC-----ccc-c----hHHHHHHHHHHHHcCC--EEEEEEeCCCCcchh
Confidence            446699999986521     111 1    1345667777777887  344456667877544

>PHA03412 putative methyltransferase; Provisional

Probab=94.95  E-value=0.042  Score=49.88  Aligned_cols=71  Identities=8%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|.-++.++        +++.    ..+.++|+..|+-.+          ... ..++.. .     ...
T Consensus        50 ~grVLDlG~GSG~Lalala--------~~~~----~~~~~~V~aVEID~~----------Al~-~Ar~n~-~-----~~~  100 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMV--------HMMM----YAKPREIVCVELNHT----------YYK-LGKRIV-P-----EAT  100 (241)
T ss_pred             CCEEEEccChHHHHHHHHH--------Hhcc----cCCCcEEEEEECCHH----------HHH-HHHhhc-c-----CCE
Confidence            4699999999998877765        3321    123578999997665          211 111111 1     123


Q ss_pred             EEeecCCCccCCCCCCCceeeEec
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      ++.   ++|....+ ++++|+++|
T Consensus       101 ~~~---~D~~~~~~-~~~FDlIIs  120 (241)
T PHA03412        101 WIN---ADALTTEF-DTLFDMAIS  120 (241)
T ss_pred             EEE---cchhcccc-cCCccEEEE
Confidence            333   67765444 569999999

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.90  E-value=0.21  Score=46.04  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++++|--.|||||-=.-.++-.+.++...      ..+..++|+..|+...
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId~~  140 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDIDLS  140 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECCHH
Confidence            58999999999997766555444444432      1335799999998654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.53  E-value=0.26  Score=44.17  Aligned_cols=36  Identities=14%  Similarity=0.092  Sum_probs=28.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ++.+|+|+||++|..++.++        ...      ++..+|+..|...
T Consensus        68 ~~~~vLEiGt~~G~s~l~la--------~~~------~~~g~v~tiD~d~  103 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTA--------LAL------PEDGRITAIDIDK  103 (234)
T ss_pred             CCCEEEEecCcccHHHHHHH--------HhC------CCCCEEEEEECCH
Confidence            46899999999999998777        332      2357888888765

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=94.49  E-value=0.045  Score=53.91  Aligned_cols=79  Identities=18%  Similarity=0.277  Sum_probs=43.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|+-+...++    +..+.    +   -.++||...--.|=.    ..+    +...++.+++    ..
T Consensus       186 ~~~vVldVGAGrGpL~~~al~----A~~~~----~---~a~~VyAVEkn~~A~----~~l----~~~v~~n~w~----~~  242 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQ----AGARA----G---GAVKVYAVEKNPNAV----VTL----QKRVNANGWG----DK  242 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHH----TTHHH----C---CESEEEEEESSTHHH----HHH----HHHHHHTTTT----TT
T ss_pred             cceEEEEeCCCccHHHHHHHH----HHHHh----C---CCeEEEEEcCCHhHH----HHH----HHHHHhcCCC----Ce
Confidence            358999999999988776652    22211    1   248888888655511    111    1111222331    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                        |.-+-|+...--.|. -+|+++|
T Consensus       243 --V~vi~~d~r~v~lpe-kvDIIVS  264 (448)
T PF05185_consen  243 --VTVIHGDMREVELPE-KVDIIVS  264 (448)
T ss_dssp             --EEEEES-TTTSCHSS--EEEEEE
T ss_pred             --EEEEeCcccCCCCCC-ceeEEEE
Confidence              344557777766665 9999999

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.13  Score=45.80  Aligned_cols=20  Identities=20%  Similarity=0.355  Sum_probs=17.5

Q ss_pred             CceEEEeecCCCCcccHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      ...+|+++|||+|++|..+.
T Consensus        72 ~g~~VLEIGtGsGY~aAvla   91 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLA   91 (209)
T ss_pred             CCCeEEEECCCchHHHHHHH
Confidence            46899999999999998665

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=94.36  E-value=0.11  Score=44.46  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=24.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      +..+|+++|||+|--++.+.        ...       +...|+++|.+.
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a--------~~~-------~~~~Vv~TD~~~   79 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAA--------KLF-------GAARVVLTDYNE   79 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHH--------HT--------T-SEEEEEE-S-
T ss_pred             CCceEEEECCccchhHHHHH--------hcc-------CCceEEEeccch
Confidence            46899999999998888766        221       347899999876

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=94.29  E-value=0.63  Score=45.17  Aligned_cols=116  Identities=11%  Similarity=-0.007  Sum_probs=61.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+||++|..++..+        ..        ...+|+..|+...       .+....+.+. ..+-+.  ..-.
T Consensus       221 g~rVLDlfsgtG~~~l~aa--------~~--------ga~~V~~VD~s~~-------al~~a~~N~~-~Ngl~~--~~v~  274 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSAL--------MG--------GCSQVVSVDTSQE-------ALDIARQNVE-LNKLDL--SKAE  274 (396)
T ss_pred             CCeEEEeccCCCHHHHHHH--------hC--------CCCEEEEEECCHH-------HHHHHHHHHH-HcCCCC--CcEE
Confidence            4689999999999765433        11        2358888887654       0111111111 112110  0112


Q ss_pred             EEeecCCCccCCC--C--CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRL--F--PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~l--f--P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      ++.   |+.+.-+  +  ...++|++++         -|+.+..+|.          .     ...+.+++..+++.=.+
T Consensus       275 ~i~---~D~~~~l~~~~~~~~~fDlVil---------DPP~f~~~k~----------~-----l~~~~~~y~~l~~~a~~  327 (396)
T PRK15128        275 FVR---DDVFKLLRTYRDRGEKFDVIVM---------DPPKFVENKS----------Q-----LMGACRGYKDINMLAIQ  327 (396)
T ss_pred             EEE---ccHHHHHHHHHhcCCCCCEEEE---------CCCCCCCChH----------H-----HHHHHHHHHHHHHHHHH
Confidence            333   5655432  1  2458999997         3444432111          1     11244566666666567


Q ss_pred             hhccCCeEEEEec
Q 024331          207 ELVAEGRMVLTFL  219 (269)
Q Consensus       207 EL~pGG~lv~~~~  219 (269)
                      -|+|||.+++...
T Consensus       328 lLk~gG~lv~~sc  340 (396)
T PRK15128        328 LLNPGGILLTFSC  340 (396)
T ss_pred             HcCCCeEEEEEeC
Confidence            7899999987553

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.26  E-value=0.22  Score=47.29  Aligned_cols=61  Identities=15%  Similarity=0.274  Sum_probs=40.8

Q ss_pred             eEEeecCCCccCCC-----CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          130 CFFTGVPGSFYGRL-----FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 ~f~~~vpgSFy~~l-----fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                      .|++|  -+|+.+|     +++-++|++=|=+|+|+.=                 .+.            .-...+|+.=
T Consensus       175 ~f~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF-----------------ete------------e~ar~~l~Nv  223 (389)
T KOG1975|consen  175 VFIAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAF-----------------ETE------------ESARIALRNV  223 (389)
T ss_pred             EEEEe--ccchhHHHHhccCCCCCcceeeeeeeEeeee-----------------ccH------------HHHHHHHHHH
Confidence            55553  5665532     4666699999999999821                 111            2234566777


Q ss_pred             hhhhccCCeEEEEeccc
Q 024331          205 SEELVAEGRMVLTFLGR  221 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~  221 (269)
                      ++-|+|||.++-+++-.
T Consensus       224 a~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  224 AKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             HhhcCCCcEEEEecCcH
Confidence            88899999999887543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=94.10  E-value=0.051  Score=49.72  Aligned_cols=85  Identities=14%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             ceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHH------------H
Q 024331            5 QVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASE------------L   72 (269)
Q Consensus         5 ~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~------------i   72 (269)
                      +.+.|.|=.-...|.+|-..+..++..+...+.          ..+..+|+|+|||+|..|..+++.            .
T Consensus         7 ~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~   76 (272)
T PRK00274          7 ELLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDL   76 (272)
T ss_pred             HHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHH
Confidence            344444433445566655555554444332221          123468999999999999988863            3


Q ss_pred             HHHHHHHHHhcCCCCCcceEEecCCCCCchHH
Q 024331           73 IKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT  104 (269)
Q Consensus        73 i~~i~~~~~~~~~~~p~~qv~~nDLP~NDFnt  104 (269)
                      ++.+++..     ..+.++++..|...-++..
T Consensus        77 ~~~~~~~~-----~~~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         77 APILAETF-----AEDNLTIIEGDALKVDLSE  103 (272)
T ss_pred             HHHHHHhh-----ccCceEEEEChhhcCCHHH
Confidence            44444332     1146788887766555543

>PRK04457 spermidine synthase; Provisional

Probab=94.07  E-value=0.059  Score=49.20  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +.+-+|+|+|||+|.-+..+.        +++       |..+|...|+-..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~--------~~~-------p~~~v~~VEidp~  101 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIY--------TYL-------PDTRQTAVEINPQ  101 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHH--------HhC-------CCCeEEEEECCHH
Confidence            456799999999998776655        432       5678888887443

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.05  E-value=0.5  Score=42.07  Aligned_cols=128  Identities=21%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHH
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS  111 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~  111 (269)
                      ..|.|.+-+..+.   .+..-+|++-|||.|...+.++        ++         -.+|+..|+...          .
T Consensus        22 ~~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~----------A   71 (218)
T PF05724_consen   22 PNPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPT----------A   71 (218)
T ss_dssp             STHHHHHHHHHHT---TSTSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HH----------H
T ss_pred             CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHH----------H
Confidence            4566666665531   2345799999999999988777        54         389999998775          2


Q ss_pred             HHHHHHHhcCC--CCCCCCce------EEeecCCCccCCCCCC-CceeeEeccccccccccCCCCCCCCCcceEEcCCCC
Q 024331          112 FQKILRKQLGS--ASGAAGQC------FFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP  182 (269)
Q Consensus       112 ~~~~~~~~~~~--~~~~~~~~------f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~  182 (269)
                      .. ...++.+.  ........      .+.-+-|+||..--.. +++|++|=-.+|+=|                    +
T Consensus        72 i~-~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al--------------------p  130 (218)
T PF05724_consen   72 IE-QAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL--------------------P  130 (218)
T ss_dssp             HH-HHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS---------------------
T ss_pred             HH-HHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC--------------------C
Confidence            11 11111110  00000111      1233458999833222 258999998887653                    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331          183 PCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       183 ~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      ++.++.|++|.           ++=|+|||.+++.++-.
T Consensus       131 p~~R~~Ya~~l-----------~~ll~p~g~~lLi~l~~  158 (218)
T PF05724_consen  131 PEMRERYAQQL-----------ASLLKPGGRGLLITLEY  158 (218)
T ss_dssp             GGGHHHHHHHH-----------HHCEEEEEEEEEEEEES
T ss_pred             HHHHHHHHHHH-----------HHHhCCCCcEEEEEEEc
Confidence            33456776644           34566999955555433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=93.86  E-value=0.28  Score=44.18  Aligned_cols=114  Identities=18%  Similarity=0.262  Sum_probs=67.5

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      -.++|+|||.|...+.++        ++       .|+.-++..+.-.+   .+-+.+    .+.. +.+.     .|+.
T Consensus        50 pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~---~v~~~l----~k~~-~~~l-----~Nlr  101 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVP---GVAKAL----KKIK-ELGL-----KNLR  101 (227)
T ss_pred             cEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehH---HHHHHH----HHHH-HcCC-----CcEE
Confidence            589999999998877666        43       48888888887766   111111    1111 1121     2444


Q ss_pred             EeecC-CCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          132 FTGVP-GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       132 ~~~vp-gSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      +.-.- --+...++|++|+|=++=++.=-|    |..-- +|.+|-     .++-.+.|               ++-|+|
T Consensus       102 i~~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH-~KRRl~-----~~~fl~~~---------------a~~Lk~  156 (227)
T COG0220         102 LLCGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKRH-HKRRLT-----QPEFLKLY---------------ARKLKP  156 (227)
T ss_pred             EEcCCHHHHHHhcCCCCCeeEEEEECCCCC----CCccc-cccccC-----CHHHHHHH---------------HHHccC
Confidence            44211 123556778889999998776666    32110 333432     22333333               677779


Q ss_pred             CCeEEEEe
Q 024331          211 EGRMVLTF  218 (269)
Q Consensus       211 GG~lv~~~  218 (269)
                      ||.+.+.+
T Consensus       157 gG~l~~aT  164 (227)
T COG0220         157 GGVLHFAT  164 (227)
T ss_pred             CCEEEEEe
Confidence            99999954

>TIGR00417 speE spermidine synthase

Probab=93.54  E-value=0.4  Score=43.69  Aligned_cols=37  Identities=19%  Similarity=0.115  Sum_probs=24.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+++|||+|..+..++        ++       .+.-++...|+..+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll--------~~-------~~~~~v~~veid~~  107 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVL--------KH-------KSVEKATLVDIDEK  107 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHH--------hC-------CCcceEEEEeCCHH
Confidence            456699999999998655444        22       12346778887554

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02366 spermidine synthase

Probab=93.50  E-value=0.4  Score=44.97  Aligned_cols=38  Identities=13%  Similarity=0.079  Sum_probs=24.9

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .+++-+|+++|||.|..+..++        +.       ++.-+|...|+...
T Consensus        89 ~~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~  126 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKM  126 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHH
Confidence            4567899999999998544333        22       12346777777653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.79  E-value=0.4  Score=49.76  Aligned_cols=117  Identities=13%  Similarity=0.090  Sum_probs=63.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      .-+|+|+||++|..|+.++        +.        ..-+|+..|+...          .+ +..+++. ..++...+-
T Consensus       539 g~rVLDlf~gtG~~sl~aa--------~~--------Ga~~V~~vD~s~~----------al-~~a~~N~~~ng~~~~~v  591 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAA--------LG--------GAKSTTTVDMSNT----------YL-EWAERNFALNGLSGRQH  591 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHH--------HC--------CCCEEEEEeCCHH----------HH-HHHHHHHHHhCCCccce
Confidence            4699999999999999777        32        1236899998765          21 1111111 011100011


Q ss_pred             eEEeecCCCccCCCC-CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf-P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -|+.   ++.+.-+- ..+++|++++.         |+.+...+.        ...+     ....+|...++..=.+-|
T Consensus       592 ~~i~---~D~~~~l~~~~~~fDlIilD---------PP~f~~~~~--------~~~~-----~~~~~~y~~l~~~a~~lL  646 (702)
T PRK11783        592 RLIQ---ADCLAWLKEAREQFDLIFID---------PPTFSNSKR--------MEDS-----FDVQRDHVALIKDAKRLL  646 (702)
T ss_pred             EEEE---ccHHHHHHHcCCCcCEEEEC---------CCCCCCCCc--------cchh-----hhHHHHHHHHHHHHHHHc
Confidence            2333   66543110 15689999983         555542110        0011     123455566665546678


Q ss_pred             ccCCeEEEEec
Q 024331          209 VAEGRMVLTFL  219 (269)
Q Consensus       209 ~pGG~lv~~~~  219 (269)
                      +|||.++++..
T Consensus       647 ~~gG~l~~~~~  657 (702)
T PRK11783        647 RPGGTLYFSNN  657 (702)
T ss_pred             CCCCEEEEEeC
Confidence            99999988653

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=92.47  E-value=0.22  Score=44.58  Aligned_cols=137  Identities=20%  Similarity=0.207  Sum_probs=83.3

Q ss_pred             ceeeccCCCCCchHHHhcHHHHHHHHH---HHHHHHHHHHhhcccC--CCCceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331            5 QVLHMNGGVGGTSYASNSLVQEKVISI---AKPITEEAMTKLFCST--SPTKVAIADLGCSSGPNTLLVASELIKVVNKI   79 (269)
Q Consensus         5 ~~l~M~gG~g~~sY~~nS~~Q~~~~~~---~~~~l~~ai~~~~~~~--~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~   79 (269)
                      ..+...||  -.+|-..|.. -+...+   .--+|-+.+.+.....  ...+++++|+||=+..|.+..           
T Consensus         4 ~ei~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-----------   69 (219)
T PF11968_consen    4 AEIEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-----------   69 (219)
T ss_pred             HHHHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-----------
Confidence            34445565  5667666554 222222   2233333344333221  234699999999988886622           


Q ss_pred             HHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCC---CCceeeEeccc
Q 024331           80 CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFP---RNSVHLFHSSY  156 (269)
Q Consensus        80 ~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP---~~Svd~~~Ss~  156 (269)
                      +       +-|.|..-||-+.        .|                  .+.-    -+|..+++|   ++++|+|.+|.
T Consensus        70 ~-------~~fdvt~IDLns~--------~~------------------~I~q----qDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   70 S-------GWFDVTRIDLNSQ--------HP------------------GILQ----QDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             c-------CceeeEEeecCCC--------CC------------------Ccee----eccccCCCCCCcccceeEEEEEE
Confidence            1       4588888888765        11                  1222    478888886   77999999999


Q ss_pred             cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCe-----EEEEecccC
Q 024331          157 SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGR-----MVLTFLGRK  222 (269)
Q Consensus       157 alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~-----lv~~~~g~~  222 (269)
                      -|.+   +|.+..                    +-+..+-...||+       |+|.     |+++++-..
T Consensus       113 VLNf---VP~p~~--------------------RG~Ml~r~~~fL~-------~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen  113 VLNF---VPDPKQ--------------------RGEMLRRAHKFLK-------PPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             EEee---CCCHHH--------------------HHHHHHHHHHHhC-------CCCccCcceEEEEeCchH
Confidence            8877   454211                    2223455667777       9999     888887553

>TIGR00478 tly hemolysin TlyA family protein

Probab=92.39  E-value=0.27  Score=44.27  Aligned_cols=35  Identities=23%  Similarity=0.171  Sum_probs=28.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..|..++        ++        ..-+|+..|...+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~--------~~--------ga~~v~avD~~~~  109 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCAL--------QK--------GAKEVYGVDVGYN  109 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHH--------Hc--------CCCEEEEEeCCHH
Confidence            45699999999999998777        43        2357999999887

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK01581 speE spermidine synthase; Validated

Probab=92.01  E-value=0.91  Score=43.83  Aligned_cols=38  Identities=26%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .++|.+|+++|||+|..+..++        +.       ++.-+|...|+-..
T Consensus       148 h~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDpe  185 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDGS  185 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCHH
Confidence            4567899999999997443333        21       23467888887664

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=90.59  E-value=0.56  Score=43.64  Aligned_cols=44  Identities=16%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .+++|...|||||-=.-.++--+.+....       ....++|+..|+..+
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~-------~~~~~~I~atDIs~~  158 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGT-------APGRWKVFASDIDTE  158 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcc-------cCCCcEEEEEECCHH
Confidence            46999999999996655444333333221       112699999999775

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=90.35  E-value=0.53  Score=44.50  Aligned_cols=77  Identities=8%  Similarity=0.092  Sum_probs=42.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CC-CCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GS-ASGAA  127 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~-~~~~~  127 (269)
                      ...+|+|+|||+|.-...+.        .+       .+..+++..|+-..          .. +..+... .. ++  .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa--------~~-------~~~~~~~atDId~~----------Al-~~A~~Nv~~Np~l--~  165 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIG--------VH-------EYGWRFVGSDIDPQ----------AL-ASAQAIISANPGL--N  165 (321)
T ss_pred             CCceEEEecCCccHHHHHHH--------hh-------CCCCEEEEEeCCHH----------HH-HHHHHHHHhccCC--c
Confidence            46899999999995544443        32       14578999998443          11 1111111 11 12  1


Q ss_pred             CceEE--eecCCCccCCC-CCCCceeeEec
Q 024331          128 GQCFF--TGVPGSFYGRL-FPRNSVHLFHS  154 (269)
Q Consensus       128 ~~~f~--~~vpgSFy~~l-fP~~Svd~~~S  154 (269)
                      ..+-+  ...++.++..+ .+.+.+|+++|
T Consensus       166 ~~I~~~~~~~~~~i~~~i~~~~~~fDlivc  195 (321)
T PRK11727        166 GAIRLRLQKDSKAIFKGIIHKNERFDATLC  195 (321)
T ss_pred             CcEEEEEccchhhhhhcccccCCceEEEEe
Confidence            12322  33444544433 47889999999

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=89.60  E-value=0.54  Score=38.54  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           29 ISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        29 ~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ++++..++...++...  ....+.+|+|+|||.|+-|..+..        .+..   ..+..+|+..|.-.
T Consensus         6 i~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~--------~l~~---~~~~~~v~~iD~~~   63 (141)
T PF13679_consen    6 IERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAH--------LLCN---SSPNLRVLGIDCNE   63 (141)
T ss_pred             HHHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHH--------HHHh---cCCCCeEEEEECCc
Confidence            3445555555544431  234579999999999999998873        2110   12668899988654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=89.14  E-value=1.6  Score=43.46  Aligned_cols=129  Identities=13%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|++||.|.-|..++        +...      .+-.|+.||...+=...|-+++.        +.|  +   .++
T Consensus       114 g~~VLD~CAAPGgKTt~la--------~~l~------~~g~lvA~D~~~~R~~~L~~nl~--------r~G--~---~nv  166 (470)
T PRK11933        114 PQRVLDMAAAPGSKTTQIA--------ALMN------NQGAIVANEYSASRVKVLHANIS--------RCG--V---SNV  166 (470)
T ss_pred             CCEEEEeCCCccHHHHHHH--------HHcC------CCCEEEEEeCCHHHHHHHHHHHH--------HcC--C---CeE
Confidence            4799999999999998877        4421      23589999987774433333332        112  1   233


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC----CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      -+...-+.-....+| +++|.|.-        ++|++=..    +.+..+  ..++..+     ++..+-=+.+|..=++
T Consensus       167 ~v~~~D~~~~~~~~~-~~fD~ILv--------DaPCSG~G~~rk~p~~~~--~~s~~~v-----~~l~~lQ~~iL~~A~~  230 (470)
T PRK11933        167 ALTHFDGRVFGAALP-ETFDAILL--------DAPCSGEGTVRKDPDALK--NWSPESN-----LEIAATQRELIESAFH  230 (470)
T ss_pred             EEEeCchhhhhhhch-hhcCeEEE--------cCCCCCCcccccCHHHhh--hCCHHHH-----HHHHHHHHHHHHHHHH
Confidence            333211111122333 35777764        45554221    111111  1111111     1122222445555566


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      =|+|||+||-+++.-.
T Consensus       231 ~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        231 ALKPGGTLVYSTCTLN  246 (470)
T ss_pred             HcCCCcEEEEECCCCC
Confidence            6789999999987664

>TIGR00755 ksgA dimethyladenosine transferase

Probab=89.05  E-value=1.2  Score=39.94  Aligned_cols=20  Identities=15%  Similarity=0.120  Sum_probs=17.4

Q ss_pred             CceEEEeecCCCCcccHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      +.-+|+|+|||+|..|..+.
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~   48 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLL   48 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHH
Confidence            45799999999999888777

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.12  E-value=9.1  Score=33.85  Aligned_cols=142  Identities=16%  Similarity=0.166  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHH
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS  111 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~  111 (269)
                      .++.||+...++-..   .+.-.+++|||+|--|-.+++.+.              |.+..+..|+-.-          .
T Consensus        28 LlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiNp~----------A   80 (209)
T KOG3191|consen   28 LLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDINPE----------A   80 (209)
T ss_pred             HHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCCHH----------H
Confidence            567778877776432   367899999999977776663222              5577788886321          1


Q ss_pred             HHHHHH-HhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHH
Q 024331          112 FQKILR-KQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYY  190 (269)
Q Consensus       112 ~~~~~~-~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~  190 (269)
                      ....+. .+.+       .+-+-.|-.|+..-+-+ +|+|+..=         .|+.+....+.|-     ..-...+|+
T Consensus        81 ~~~Tl~TA~~n-------~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~-----~~~i~~a~a  138 (209)
T KOG3191|consen   81 LEATLETARCN-------RVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIG-----DEGIASAWA  138 (209)
T ss_pred             HHHHHHHHHhc-------CCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccch-----hHHHHHHHh
Confidence            111111 1111       12233344677666666 88887654         2555543222221     011123444


Q ss_pred             --HHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          191 --EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       191 --~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                        +-.+.=..+||..=-.-|.|-|.+++..+-++
T Consensus       139 GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  139 GGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             cCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence              33444556677655666779999999887664

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=87.94  E-value=1.3  Score=40.31  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=27.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ++-+|+++|+++|..|+.++        +..      ++..+|+-.|...
T Consensus        79 ~ak~iLEiGT~~GySal~la--------~al------~~~g~v~tiE~~~  114 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATA--------LAL------PEDGKILAMDINR  114 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHH--------hhC------CCCCEEEEEeCCH
Confidence            47899999999999999877        321      2456788887754

>PLN02476 O-methyltransferase

Probab=87.48  E-value=1.7  Score=40.37  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=27.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++-+|+|+||++|..|+.++        ...      ++.-.|+..|....
T Consensus       118 ~ak~VLEIGT~tGySal~lA--------~al------~~~G~V~TiE~d~e  154 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVA--------LVL------PESGCLVACERDSN  154 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            47899999999999999887        332      23456777776553

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=87.46  E-value=0.9  Score=41.13  Aligned_cols=48  Identities=15%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             CceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGND  101 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~ND  101 (269)
                      +.-+|+|+|||+|..|..+++.            .++.++++..    ..+.+.++..|.-.-+
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~----~~~~v~ii~~D~~~~~   88 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI----AAGNVEIIEGDALKVD   88 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc----cCCCEEEEEeccccCC
Confidence            3478999999999999988864            3444444331    1245777766654433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=87.37  E-value=2.8  Score=38.60  Aligned_cols=28  Identities=21%  Similarity=0.165  Sum_probs=21.4

Q ss_pred             HHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          195 RDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       195 ~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                      ..+.+|++.=.+-|.|||+||+==-+|+
T Consensus       186 ~GL~~ff~kis~ll~pgGiLvvEPQpWk  213 (288)
T KOG2899|consen  186 DGLRRFFRKISSLLHPGGILVVEPQPWK  213 (288)
T ss_pred             HHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence            5677788877888889999999554554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=87.09  E-value=5.1  Score=36.79  Aligned_cols=17  Identities=18%  Similarity=0.370  Sum_probs=14.1

Q ss_pred             CceEEEeecCCCCcccH
Q 024331           50 TKVAIADLGCSSGPNTL   66 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~   66 (269)
                      .|.+|+|+|||.|.-+.
T Consensus        33 ~P~~vLD~GsGpGta~w   49 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALW   49 (274)
T ss_pred             CCceEEEecCChHHHHH
Confidence            57899999999997544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=86.88  E-value=1  Score=38.00  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=29.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+++|+|||.|.-|-.++        ++.      .+...|+..|+...
T Consensus        23 ~~~~vlDlG~aPGGws~~~~--------~~~------~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLL--------QRG------GPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHH--------TST------TTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeee--------ecc------cccceEEEEecccc
Confidence            57999999999999988777        331      25689999999877

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=86.76  E-value=0.92  Score=42.30  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=25.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +.+|+|+|||+|..++.++        ++         ..+|+..|....
T Consensus       174 ~~~VLDl~cG~G~~sl~la--------~~---------~~~V~gvD~s~~  206 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCA--------TP---------GMQLTGIEISAE  206 (315)
T ss_pred             CCEEEEccCCCCHHHHHHH--------hc---------CCEEEEEeCCHH
Confidence            4789999999999988777        22         257888887654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=86.53  E-value=2  Score=38.47  Aligned_cols=37  Identities=14%  Similarity=0.083  Sum_probs=28.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++-+|+++|.+.|+.|+.++        ...      +.+.+++-.|....
T Consensus        59 ~~k~iLEiGT~~GySal~mA--------~~l------~~~g~l~tiE~~~e   95 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMA--------LAL------PDDGRLTTIERDEE   95 (219)
T ss_pred             CCceEEEeecccCHHHHHHH--------hhC------CCCCeEEEEeCCHH
Confidence            57899999999999999888        432      12567888877664

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=86.46  E-value=7.4  Score=37.14  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+=++-|.-|..++        +..     ......|+.+|...+=...|..++.        +.|-     .++
T Consensus       157 ge~VlD~cAAPGGKTthla--------~~~-----~~~~~iV~A~D~~~~Rl~~l~~nl~--------RlG~-----~nv  210 (355)
T COG0144         157 GERVLDLCAAPGGKTTHLA--------ELM-----ENEGAIVVAVDVSPKRLKRLRENLK--------RLGV-----RNV  210 (355)
T ss_pred             cCEEEEECCCCCCHHHHHH--------Hhc-----CCCCceEEEEcCCHHHHHHHHHHHH--------HcCC-----Cce
Confidence            4899999999999999887        543     2234668999998874444444332        2222     233


Q ss_pred             EEeecCCCccCCCCCCC-ceeeEeccccccccccCCCCCCC----CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          131 FFTGVPGSFYGRLFPRN-SVHLFHSSYSLQWLSQVPDGLES----NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~-Svd~~~Ss~alHWLS~~P~~l~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      -+.-.-++.+....+.. .+|-+.-        +.|++-..    +.+.-|--....-.....++.       .+|.+=.
T Consensus       211 ~~~~~d~~~~~~~~~~~~~fD~iLl--------DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~-------~iL~~a~  275 (355)
T COG0144         211 IVVNKDARRLAELLPGGEKFDRILL--------DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK-------EILAAAL  275 (355)
T ss_pred             EEEecccccccccccccCcCcEEEE--------CCCCCCCcccccCccccccCCHHHHHHHHHHHH-------HHHHHHH
Confidence            33334444444455554 4887765        66776542    122112111111112223333       3444445


Q ss_pred             hhhccCCeEEEEecccCC
Q 024331          206 EELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~~  223 (269)
                      +-|||||.|+-+++....
T Consensus       276 ~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         276 KLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             HhcCCCCEEEEEccCCch
Confidence            555699999999988863

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=86.04  E-value=0.43  Score=42.03  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=16.6

Q ss_pred             CceEEEeecCCCCcccHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      +.-+|+|+|||||..++...
T Consensus        45 ~g~~V~DlG~GTG~La~ga~   64 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAA   64 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHH
Confidence            45689999999999888654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=83.59  E-value=1.1  Score=39.35  Aligned_cols=19  Identities=21%  Similarity=0.032  Sum_probs=15.7

Q ss_pred             ceEEEeecCCCCcccHHHH
Q 024331           51 KVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~   69 (269)
                      ..+|+|+|||+|.-++.++
T Consensus        54 ~~~vLDl~~GsG~l~l~~l   72 (199)
T PRK10909         54 DARCLDCFAGSGALGLEAL   72 (199)
T ss_pred             CCEEEEcCCCccHHHHHHH
Confidence            3699999999998887544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=83.12  E-value=0.83  Score=41.71  Aligned_cols=28  Identities=7%  Similarity=0.022  Sum_probs=20.6

Q ss_pred             HHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          195 RDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       195 ~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                      -++..++-.=+.-|+|||++.||.=.-.
T Consensus       202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~  229 (287)
T COG4976         202 GALEGLFAGAAGLLAPGGLFAFSVETLP  229 (287)
T ss_pred             cchhhHHHHHHHhcCCCceEEEEecccC
Confidence            4555666666888999999999875443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=83.04  E-value=8.3  Score=28.32  Aligned_cols=20  Identities=35%  Similarity=0.330  Sum_probs=15.0

Q ss_pred             hhhhhccCCeEEEEecccCC
Q 024331          204 RSEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~~g~~~  223 (269)
                      ..+-++|||.+++.......
T Consensus       141 ~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         141 LLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             HHHhcCCCcEEEEEeccCCC
Confidence            35557799999999876653

>PRK04148 hypothetical protein; Provisional

Probab=83.04  E-value=2.2  Score=35.37  Aligned_cols=20  Identities=15%  Similarity=0.011  Sum_probs=14.6

Q ss_pred             CceEEEeecCCCCc-ccHHHH
Q 024331           50 TKVAIADLGCSSGP-NTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~-Ns~~~~   69 (269)
                      +..+|+|+|||+|. .+..+.
T Consensus        16 ~~~kileIG~GfG~~vA~~L~   36 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLK   36 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHH
Confidence            35799999999996 444333

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=82.12  E-value=2.6  Score=37.21  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             CceEEEeecCCCCcccHHHH---------------------HHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331           50 TKVAIADLGCSSGPNTLLVA---------------------SELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF  102 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~---------------------~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF  102 (269)
                      +.-+++|+|||.|.-.+..+                     ....+.++++++..|....++++..-|.-.+||
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence            35699999999998755332                     222333344444445455567777666655554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=81.73  E-value=3.8  Score=38.13  Aligned_cols=52  Identities=13%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331           50 TKVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDF  102 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF  102 (269)
                      ..-+|+|+|||+|.-|..+++.            .++.++++....+ ..+.++++..|.-..|+
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~~   99 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTEF   99 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhcc
Confidence            3468999999999999988753            4556665543222 12457777777755444

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=81.69  E-value=1.8  Score=38.25  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHH
Q 024331           28 VISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        28 ~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      +..++..+|..-+. ++. ...+.-+|+|||||.|.--..+.
T Consensus        47 ae~riv~wl~d~~~-~~r-v~~~A~~VlDLGtGNG~~L~~L~   86 (227)
T KOG1271|consen   47 AEERIVDWLKDLIV-ISR-VSKQADRVLDLGTGNGHLLFQLA   86 (227)
T ss_pred             HHHHHHHHHHhhhh-hhh-hcccccceeeccCCchHHHHHHH
Confidence            34455666666554 221 12222399999999996544443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=81.19  E-value=4.1  Score=41.78  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=73.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCC--CCCcceEEecCC-C--CCchHHHHHhhHHHHHHHHHhcCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGS--QLPEFQVFLNDL-P--GNDFNTIFRSLASFQKILRKQLGSA  123 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~--~~p~~qv~~nDL-P--~NDFntLF~~l~~~~~~~~~~~~~~  123 (269)
                      .+.++|+|+|=|+|.|.+.+++..-+ .+++    ++  ....++++--+. |  .-|+..+.+..|.+.. +.++..  
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~-~~~~----~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~-~~~~l~--  127 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQ-FRQR----HPPARLKRLHFISFEKFPLTRADLARAHQHWPELAP-LAEQLQ--  127 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHH-hhhh----CCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHH-HHHHHH--
Confidence            34699999999999999998854222 1211    11  112466666664 2  3455555444333221 111110  


Q ss_pred             CCCCCceEEeecCCCccCCCCCCCc--eeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331          124 SGAAGQCFFTGVPGSFYGRLFPRNS--VHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL  201 (269)
Q Consensus       124 ~~~~~~~f~~~vpgSFy~~lfP~~S--vd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL  201 (269)
                           ..|...++| ++...|.++.  +++.+- -+...|++++..    -+.+|..+.+|..=-+-|...+-+.+.+.+
T Consensus       128 -----~~~~~~~~g-~~~~~~~~~~~~l~l~~g-d~~~~~~~~~~~----~d~~~lD~FsP~~np~~W~~~~~~~l~~~~  196 (662)
T PRK01747        128 -----AQWPLLLPG-CHRLLFDDGRVTLDLWFG-DANELLPQLDAR----ADAWFLDGFAPAKNPDMWSPNLFNALARLA  196 (662)
T ss_pred             -----HhCCccCCC-ceEEEecCCcEEEEEEec-CHHHHHHhcccc----ccEEEeCCCCCccChhhccHHHHHHHHHHh
Confidence                 112223343 4444555553  334443 222344444421    367888888874444456555555554444


Q ss_pred             hhhhhhhccCCeEEE
Q 024331          202 KCRSEELVAEGRMVL  216 (269)
Q Consensus       202 ~~Ra~EL~pGG~lv~  216 (269)
                             +|||.++-
T Consensus       197 -------~~~~~~~t  204 (662)
T PRK01747        197 -------RPGATLAT  204 (662)
T ss_pred             -------CCCCEEEE
Confidence                   49988873

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=80.34  E-value=7.1  Score=37.63  Aligned_cols=54  Identities=15%  Similarity=0.072  Sum_probs=38.6

Q ss_pred             cCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeE
Q 024331          135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM  214 (269)
Q Consensus       135 vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l  214 (269)
                      +.+.|-..+|+++++|++.+.-+.+..++                  .   .++|++++            ++++|||+.
T Consensus       165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~------------------~---~~~y~Ei~------------rv~kpGG~~  211 (364)
T KOG1269|consen  165 VVADFGKMPFEDNTFDGVRFLEVVCHAPD------------------L---EKVYAEIY------------RVLKPGGLF  211 (364)
T ss_pred             ehhhhhcCCCCccccCcEEEEeecccCCc------------------H---HHHHHHHh------------cccCCCceE
Confidence            55899999999999999999666555322                  1   22444433            458899999


Q ss_pred             EEEeccc
Q 024331          215 VLTFLGR  221 (269)
Q Consensus       215 v~~~~g~  221 (269)
                      ++-...+
T Consensus       212 i~~e~i~  218 (364)
T KOG1269|consen  212 IVKEWIK  218 (364)
T ss_pred             EeHHHHH
Confidence            9886644

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=80.03  E-value=21  Score=32.80  Aligned_cols=125  Identities=22%  Similarity=0.223  Sum_probs=74.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      -.+|+|.|.|||.-|+.++        ..-      .|+-+|+--|.-. ||-...+.  .    +.. .+  +   .+.
T Consensus        95 g~rVlEAGtGSG~lt~~La--------~~v------g~~G~v~tyE~r~-d~~k~A~~--N----l~~-~~--l---~d~  147 (256)
T COG2519          95 GSRVLEAGTGSGALTAYLA--------RAV------GPEGHVTTYEIRE-DFAKTARE--N----LSE-FG--L---GDR  147 (256)
T ss_pred             CCEEEEcccCchHHHHHHH--------Hhh------CCCceEEEEEecH-HHHHHHHH--H----HHH-hc--c---ccc
Confidence            5799999999999988777        221      1456666666544 55222221  0    111 11  2   111


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                       +.-.-|+...-.+++ .+|.++=        ++|.               |-.+.+-.               .+.|+|
T Consensus       148 -v~~~~~Dv~~~~~~~-~vDav~L--------Dmp~---------------PW~~le~~---------------~~~Lkp  187 (256)
T COG2519         148 -VTLKLGDVREGIDEE-DVDAVFL--------DLPD---------------PWNVLEHV---------------SDALKP  187 (256)
T ss_pred             -eEEEecccccccccc-ccCEEEE--------cCCC---------------hHHHHHHH---------------HHHhCC
Confidence             111228888888888 8888876        4454               22233333               677889


Q ss_pred             CCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccc
Q 024331          211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLL  256 (269)
Q Consensus       211 GG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~  256 (269)
                      ||.+++-.+.              .+.+...+..|.+.|.++.+.+
T Consensus       188 gg~~~~y~P~--------------veQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         188 GGVVVVYSPT--------------VEQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             CcEEEEEcCC--------------HHHHHHHHHHHHhcCccchhhh
Confidence            9999886532              2456777777777788665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		4e-87
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		2e-51
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		2e-50
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		5e-40

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score =  317 bits (812), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 154/250 (61%), Positives = 184/250 (73%), Gaps = 13/250 (5%)
Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFC-STSPTKVAIADLGC 59
           M+V QVLHM GG G  SYA NS +Q +VISI KPITE A+T L+   T  T++AIADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQ-LPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
           SSGPN L   +ELIK V ++  K+G +  PE+Q+FLNDLPGNDFN IFRSL     +   
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--- 117
Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA 178
                    G CF  GVPGSFYGRLFPRN++H  HSSYSL WLSQVP G+ESNKGNI+MA
Sbjct: 118 --------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA 169
Query: 179 STSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL 238
           +T P  VL AYY+QFQ D +LFL+CR++E+V  GRMVLT LGR+S+D +S ECC IW+LL
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL 229
Query: 239 ATALNNMVSE 248
           A ALN MVSE
Sbjct: 230 AMALNQMVSE 239

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 158/259 (61%), Gaps = 18/259 (6%)
Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
           ME+ +VL MNGG G TSYA NS   + V++  KP+ E+ + +L  +  P     + +ADL
Sbjct: 1   MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58  GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNTLL   ++++ ++K+  +  ++L  P  Q+FLNDL  NDFN++F+ L SF + 
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL------E 169
           L K+ G   G+   C    +PGSFY RLFP  S+H  HS Y LQWLSQVP GL       
Sbjct: 121 LEKENGRKIGS---CLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIG 177
Query: 170 SNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
           +NKG+I+ +  S   V  AY +QF +DF+ FL+  SEEL + GRM+LT + +  +  +  
Sbjct: 178 TNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARN 237
Query: 230 ECCYIWELLATALNNMVSE 248
                 +LL  A+N++V E
Sbjct: 238 AI----DLLEMAINDLVVE 252

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 158/261 (60%), Gaps = 23/261 (8%)
Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK---VAIADL 57
           ME+ +VLHMNGG G TSYA NS     +I + KP+ E+ + +L  +  P       + DL
Sbjct: 1   MELQEVLHMNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58  GCSSGPNTLLVASELIKVVNKICDKLGSQL--PEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNT     ++++ ++K+  +  ++L  P  Q+FLNDL  NDFN++F+ L SF + 
Sbjct: 60  GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----- 170
           L K+ G   G+   C    +PGSFY RLFP  S+H  HS Y L WLSQVP GL +     
Sbjct: 120 LEKENGRKIGS---CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGIS 176
Query: 171 -NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ--DPS 227
            NKG I+ +  S P +  AY +QF +DF+ FL+  SEEL++ GRM+LTF+ ++ +   P+
Sbjct: 177 VNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPN 236
Query: 228 SKECCYIWELLATALNNMVSE 248
           S       +LL  ++N++V E
Sbjct: 237 S------MDLLEMSINDLVIE 251

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 126/237 (53%), Gaps = 9/237 (3%)
Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAM--TKLFCSTSPTKVAIADLG 58
           M++ ++L M GG G  SYA+NSL Q         + EE +    L  S SP      DLG
Sbjct: 1   MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 59  CSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
           CSSG NT+ +   ++K ++K  D  G   PEF  F +DLP NDFNT+F+ L         
Sbjct: 61  CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120
Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NK 172
           +   A+      F  GVPGSFY RLFP  ++  FHS++SL WLSQVP+ +        N+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180
Query: 173 GNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
           G +F+         TAY  QFQ D + FL+ R+ E+   G M L  LGR S DP+ +
Sbjct: 181 GRVFIHGAGEKTT-TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQ 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	2e-93
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	3e-92
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	2e-87
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  278 bits (713), Expect = 2e-93
 Identities = 153/250 (61%), Positives = 183/250 (73%), Gaps = 13/250 (5%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTS-PTKVAIADLGC 59
           M+V QVLHM GG G  SYA NS +Q +VISI KPITE A+T L+   +  T++AIADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQL-PEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
           SSGPN L   +ELIK V ++  K+G +  PE+Q+FLNDLPGNDFN IFRSL         
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND---- 116

Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA 178
                    G CF  GVPGSFYGRLFPRN++H  HSSYSL WLSQVP G+ESNKGNI+MA
Sbjct: 117 -------VDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA 169

Query: 179 STSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL 238
           +T P  VL AYY+QFQ D +LFL+CR++E+V  GRMVLT LGR+S+D +S ECC IW+LL
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL 229

Query: 239 ATALNNMVSE 248
           A ALN MVSE
Sbjct: 230 AMALNQMVSE 239

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score =  276 bits (706), Expect = 3e-92
 Identities = 98/274 (35%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLF--CSTSPTKVAIADLG 58
           M++ ++L M GG G  SYA+NSL Q         + EE +  +    S SP      DLG
Sbjct: 1   MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60

Query: 59  CSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
           CSSG NT+ +   ++K ++K  D  G   PEF  F +DLP NDFNT+F+ L         
Sbjct: 61  CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120

Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NK 172
           +   A+      F  GVPGSFY RLFP  ++  FHS++SL WLSQVP+ +        N+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180

Query: 173 GNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECC 232
           G +F+         TAY  QFQ D + FL+ R+ E+   G M L  LGR S DP+ +   
Sbjct: 181 GRVFIHGAGEK-TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGA 239

Query: 233 Y--IWELLATALNNMVSEVTKSFLLLIVFNQLNY 264
                     A +++V E   +      FN   Y
Sbjct: 240 GLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVY 273

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  264 bits (675), Expect = 2e-87
 Identities = 108/275 (39%), Positives = 155/275 (56%), Gaps = 19/275 (6%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSP---TKVAIADL 57
           ME+ +VLHMNGG G TSYA NS     +I   KP+ E+ + +L  +  P       + DL
Sbjct: 1   MELQEVLHMNGGEGDTSYAKNSSYNLFLIR-VKPVLEQCIQELLRANLPNINKCFKVGDL 59

Query: 58  GCSSGPNTLLVASELIKVVNKICDKL--GSQLPEFQVFLNDLPGNDFNTIFRSLASFQKI 115
           GC+SGPNT     ++++ ++K+  +     + P  Q+FLNDL  NDFN++F+ L SF + 
Sbjct: 60  GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119

Query: 116 LRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----- 170
           L K+ G   G    C    +PGSFY RLFP  S+H  HS Y L WLSQVP GL +     
Sbjct: 120 LEKENGRKIG---SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGIS 176

Query: 171 -NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSK 229
            NKG I+ +  S P +  AY +QF +DF+ FL+  SEEL++ GRM+LTF+ ++ +     
Sbjct: 177 VNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFD--- 233

Query: 230 ECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNY 264
                 +LL  ++N++V E       L  FN   Y
Sbjct: 234 -HPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIY 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 50/317 (15%), Positives = 89/317 (28%), Gaps = 92/317 (29%)

Query: 6   VLH-MNGGVGGTSYASNSLVQEKV----------ISIAKPITEEA----MTKLFCSTSPT 50
           ++  +  G G T  A +  +  KV          +++    + E     + KL     P 
Sbjct: 154 LIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 51  KVAIADLGCS-------------------SGPNTLLVASELIKVVNKICDKLGSQLPEFQ 91
             + +D   +                      N LL       V+  + +         +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNVQNA--------K 257

Query: 92  VFLNDLPGNDFNTIFRSLASFQKIL---R-KQLGSASGAAGQCFFTGVPGSFYGRLFPRN 147
            +      N FN          KIL   R KQ+     AA     +    S    L P  
Sbjct: 258 AW------NAFN--LSC-----KILLTTRFKQVTDFLSAATTTHISLDHHS--MTLTPDE 302

Query: 148 SVHLFHSSYSLQWLSQVPDGL--ESNKGN-----IFMASTSPPCVLTAYYEQFQRD---- 196
              L      L++L   P  L  E    N     I   S          ++    D    
Sbjct: 303 VKSLL-----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 197 -FSLFLKCRSEELVAEGRMVLTFLG--RKSQDPSSKECCYIW-ELLATALNNMVSEVTKS 252
                L        AE R +   L     S    +     IW +++ + +  +V+++ K 
Sbjct: 358 IIESSLNVLEP---AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 253 FLLLIVFNQLNYKLKDL 269
            L+     +    +  +
Sbjct: 415 SLVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 56/329 (17%), Positives = 93/329 (28%), Gaps = 108/329 (32%)

Query: 16  TSYASN----SLVQEKVISI---AKPITEEAMTKLF---------------CSTSPTKVA 53
           T +       S      IS+   +  +T + +  L                 +T+P +++
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 54  -IADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF 112
            IA+     G  T     +  K VN  CDKL + +   +  LN L   ++  +F  L+ F
Sbjct: 332 IIAES-IRDGLATW----DNWKHVN--CDKLTTII---ESSLNVLEPAEYRKMFDRLSVF 381

Query: 113 QK----------IL------------RKQLGSASGAAGQCFFTGVPGSFYGRLF-----P 145
                       ++              +L   S    Q   + +  S            
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKL 439

Query: 146 RNSVHLFH----SSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSL-- 199
            N   L H      Y       +P   +S+          PP  L  Y+        +  
Sbjct: 440 ENEYAL-HRSIVDHY------NIPKTFDSDD-------LIPPY-LDQYFYSH-----IGH 479

Query: 200 -FLKCRSEELVAEGRMV---LTFLGRK--SQDPSSKECCYIWELLA-------------T 240
                   E +   RMV     FL +K      +      I   L               
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 241 ALNNMVSEVTKSFLLLIVFNQLNYKLKDL 269
               +V+ +   FL  I  N +  K  DL
Sbjct: 540 KYERLVNAI-LDFLPKIEENLICSKYTDL 567

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	100.0
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	100.0
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	100.0
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.02
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.01
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.0
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.94
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.9
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.9
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.85
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.79
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.78
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.77
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.77
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.76
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.75
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.73
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.72
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.72
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.72
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.71
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.71
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.7
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.7
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.66
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.65
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.64
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.63
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.61
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.61
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.61
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.6
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.6
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.6
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.6
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.59
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.58
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.56
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.56
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.56
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.56
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.55
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.55
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.54
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.54
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.53
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.53
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.53
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.53
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.53
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.53
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.52
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.52
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.51
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.51
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.49
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.48
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.47
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.47
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.47
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.45
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.44
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.44
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.44
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.43
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.42
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.41
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.41
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.4
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.39
3ocj_A	305	Putative exported protein; structural genomics, PS	98.39
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.39
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.36
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.36
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.36
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.35
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.34
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.34
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.33
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.33
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.32
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.31
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.31
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.3
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.3
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.29
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.29
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.29
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.29
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.29
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.27
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.27
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.26
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.26
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.26
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.26
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.26
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.23
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.23
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.22
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.2
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.2
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.19
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.18
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.18
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.17
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.16
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.16
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.15
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.15
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.13
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.13
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.12
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.11
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.11
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.11
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.09
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.08
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.06
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.05
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.03
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.01
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.0
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.0
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.98
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.98
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.98
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.98
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.97
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.96
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.94
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.94
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.92
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.91
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.91
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.89
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.88
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.88
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.87
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.85
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.84
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.84
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.83
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.81
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.81
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.81
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.8
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.78
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.78
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.77
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.76
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.76
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.75
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.7
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.7
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.7
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.68
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.67
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.67
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.67
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.65
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.65
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.63
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.62
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.6
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.6
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.6
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.6
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.59
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.58
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.57
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.49
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.49
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.49
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.48
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.48
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.47
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.46
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.45
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.41
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.4
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.39
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.37
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.36
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.35
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.35
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.35
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.33
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.33
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.32
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.32
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.29
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.28
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.25
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.17
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.15
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.15
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.14
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.13
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.12
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.03
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.0
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.0
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.99
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	96.96
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.96
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.92
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	96.89
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.87
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.86
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.85
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.84
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.83
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.81
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.79
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.78
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.7
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.69
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.68
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.66
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	96.61
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.6
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.55
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.47
2o07_A	304	Spermidine synthase; structural genomics, structur	96.38
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.37
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.36
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.27
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.26
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.2
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.11
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.08
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.0
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.0
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	95.78
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.69
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.64
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	95.62
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	95.39
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	95.38
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	95.3
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	95.28
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	94.83
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	94.79
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	94.51
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	94.26
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	93.93
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	93.84
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	93.7
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	93.68
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	93.36
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.22
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	92.91
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	92.89
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	92.72
3khk_A	544	Type I restriction-modification system methylation	92.35
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	91.83
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	90.79
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	90.5
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	90.19
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	89.97
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	89.8
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	89.15
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	89.09
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	88.85
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	88.67
3k6r_A	278	Putative transferase PH0793; structural genomics,	87.85
3lkd_A	542	Type I restriction-modification system methyltrans	87.39
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	87.32
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	84.31
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	80.37

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=100.00  E-value=5.3e-83  Score=602.33  Aligned_cols=256  Identities=61%  Similarity=1.010  Sum_probs=242.3

Q ss_pred             CcccceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccC-CCCceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331            1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCST-SPTKVAIADLGCSSGPNTLLVASELIKVVNKI   79 (269)
Q Consensus         1 ~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~-~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~   79 (269)
                      |+++++|||+||+|++||++||.+|++++..++|++++||++++... .+++++|||||||+|+||+.+++.||++|+++
T Consensus         1 m~~~~~~~m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~   80 (359)
T 1m6e_X            1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL   80 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred             CCcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999998765 67899999999999999999999999999999


Q ss_pred             HHhcCC-CCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccc
Q 024331           80 CDKLGS-QLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSL  158 (269)
Q Consensus        80 ~~~~~~-~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~al  158 (269)
                      |.+.++ ++|+|||||||||+||||+||++|+.+.    ++.       ++||++|||||||+||||++|+|++||++||
T Consensus        81 ~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~~~-------~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aL  149 (359)
T 1m6e_X           81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----DVD-------GVCFINGVPGSFYGRLFPRNTLHFIHSSYSL  149 (359)
T ss_dssp             HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----SCT-------TCEEEEEEESCSSSCCSCTTCBSCEEEESCT
T ss_pred             HHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----ccC-------CCEEEEecchhhhhccCCCCceEEEEehhhh
Confidence            987776 7899999999999999999999998753    110       3699999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHH
Q 024331          159 QWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL  238 (269)
Q Consensus       159 HWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l  238 (269)
                      ||||++|+.+.+|||+||++++++++|.++|++||++||..||++|++||||||+|+++++|+.+.++.+++.+.+|+.|
T Consensus       150 HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l  229 (359)
T 1m6e_X          150 MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL  229 (359)
T ss_dssp             TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHH
T ss_pred             hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888887777889999


Q ss_pred             HHHHHHHHHccCcccccccceeccccccc
Q 024331          239 ATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       239 ~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      .++|++||.||+|++|++|+||+|.|.+.
T Consensus       230 ~~al~~mv~eGli~~ek~d~f~~P~y~ps  258 (359)
T 1m6e_X          230 AMALNQMVSEGLIEEEKMDKFNIPQYTPS  258 (359)
T ss_dssp             HHHHHHHHHTTCSCCSTTGGGCCCCBCCC
T ss_pred             HHHHHHHHHccccchhhhhccCCCccCCC
Confidence            99999999999999999999999999874

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=100.00  E-value=1.2e-80  Score=590.70  Aligned_cols=257  Identities=42%  Similarity=0.746  Sum_probs=226.8

Q ss_pred             CcccceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCC---ceEEEeecCCCCcccHHHHHHHHHHHH
Q 024331            1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPT---KVAIADLGCSSGPNTLLVASELIKVVN   77 (269)
Q Consensus         1 ~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~---~~~IaD~GCs~G~Ns~~~~~~ii~~i~   77 (269)
                      |+++++|||+||+|++||++||. |++++..++|++++||++++....++   +++|||||||+|+||+.+++.||++|+
T Consensus         1 m~~~~~~~M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~   79 (384)
T 2efj_A            1 MELQEVLHMNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSID   79 (384)
T ss_dssp             --CTTTCCCCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcccccccCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHH
Confidence            88999999999999999999999 99999999999999999998765566   899999999999999999999999999


Q ss_pred             HHHHh--cCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEecc
Q 024331           78 KICDK--LGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus        78 ~~~~~--~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                      ++|..  .+.++|+||||+||||+||||+||++||.+.+++.++.|..+   ++||++|||||||+|+||++|+|++||+
T Consensus        80 ~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~---~~~f~~gvpgSFy~rlfp~~S~d~v~Ss  156 (384)
T 2efj_A           80 KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKI---GSCLIGAMPGSFYSRLFPEESMHFLHSC  156 (384)
T ss_dssp             CC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCT---TSEEEEECCSCTTSCCSCTTCEEEEEEE
T ss_pred             HHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCC---CceEEEecchhhhhccCCCCceEEEEec
Confidence            99865  455679999999999999999999999999988877666544   5899999999999999999999999999


Q ss_pred             ccccccccCCCCCCC------CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCC--CCC
Q 024331          156 YSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ--DPS  227 (269)
Q Consensus       156 ~alHWLS~~P~~l~~------nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~--~~~  227 (269)
                      +||||||++|+.+.+      |||+||+++++|++|.++|++||++||..||++|++||||||+|+++++|+++.  ++.
T Consensus       157 ~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~  236 (384)
T 2efj_A          157 YCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPN  236 (384)
T ss_dssp             SCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCC
T ss_pred             ceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcc
Confidence            999999999999887      999999999999999999999999999999999999999999999999999887  665


Q ss_pred             ChhhhHHHHHHHHHHHHHHHccCcccccccceeccccccc
Q 024331          228 SKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       228 ~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      ++      +.+.++|++||.||+|+++++|+||+|.|.+.
T Consensus       237 ~~------~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps  270 (384)
T 2efj_A          237 SM------DLLEMSINDLVIEGHLEEEKLDSFNVPIYAPS  270 (384)
T ss_dssp             HH------HHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCC
T ss_pred             cH------HHHHHHHHHHHHhCCcchhhhcccCCcccCCC
Confidence            43      38999999999999999999999999999764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-78  Score=575.33  Aligned_cols=263  Identities=37%  Similarity=0.607  Sum_probs=214.4

Q ss_pred             CcccceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhcccC--CCCceEEEeecCCCCcccHHHHHHHHHHHHH
Q 024331            1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCST--SPTKVAIADLGCSSGPNTLLVASELIKVVNK   78 (269)
Q Consensus         1 ~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~--~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~   78 (269)
                      |+++++|||+||+|++||++||.+|++++..++|++++||+++....  .+++++|||||||+|+||+.+++.||++|++
T Consensus         1 m~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~   80 (374)
T 3b5i_A            1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISK   80 (374)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999987654  4678999999999999999999999999999


Q ss_pred             HHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCCCCceEEeecCCCccCCCCCCCceeeEecc
Q 024331           79 ICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus        79 ~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                      +|...+.++|++||++||||+||||+||++|+.+.+++..   ..+...   ++||++|||||||+|+||++|+|++||+
T Consensus        81 ~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~---~~~f~~gvpgSFy~rlfP~~S~d~v~Ss  157 (374)
T 3b5i_A           81 RFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGN---RSYFVAGVPGSFYRRLFPARTIDFFHSA  157 (374)
T ss_dssp             HHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCC---BCSEEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred             HHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCC---CceEEEecChhhhcccCCCcceEEEEec
Confidence            9988887889999999999999999999999976432211   011211   5799999999999999999999999999


Q ss_pred             ccccccccCCCCCCC------CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCC-
Q 024331          156 YSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSS-  228 (269)
Q Consensus       156 ~alHWLS~~P~~l~~------nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~-  228 (269)
                      +||||||++|+.+.+      |||+||+++++++ |.++|++||++||..||++|++||||||+|+++++|+++.++.+ 
T Consensus       158 ~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~  236 (374)
T 3b5i_A          158 FSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK-TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQ  236 (374)
T ss_dssp             SCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCC
T ss_pred             ceeeeeccCchhhhccccccccCCceEeCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccc
Confidence            999999999998875      9999999999988 99999999999999999999999999999999999998877766 


Q ss_pred             hhhhHHH-HHHHHHHHHHHHccCcccccccceeccccccc
Q 024331          229 KECCYIW-ELLATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       229 ~~~~~~~-~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      .+.+.+| +.|.++|++|+.||+|+++++|+||+|.|.+.
T Consensus       237 ~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps  276 (374)
T 3b5i_A          237 GGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPS  276 (374)
T ss_dssp             HHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCC
T ss_pred             cchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCC
Confidence            4456789 99999999999999999999999999999864

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.02  E-value=1.9e-09  Score=94.87  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=98.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +...+|+|+|||+|..++.++        +.        +..+|+..|+...       .+....+... ..+...   .
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la--------~~--------~~~~v~gvD~s~~-------~~~~a~~~~~-~~~~~~---~   97 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLA--------GH--------VTGQVTGLDFLSG-------FIDIFNRNAR-QSGLQN---R   97 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHH--------TT--------CSSEEEEEESCHH-------HHHHHHHHHH-HTTCTT---T
T ss_pred             CCCCEEEEeCCCCCHHHHHHH--------hc--------cCCEEEEEeCCHH-------HHHHHHHHHH-HcCCCc---C
Confidence            456899999999999888776        32        4579999998654       0111111111 112110   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      --|+   .+++....+|++++|+++|..++|++ .                                 +..+|+.=.+-|
T Consensus        98 v~~~---~~d~~~~~~~~~~fD~i~~~~~~~~~-~---------------------------------~~~~l~~~~~~L  140 (267)
T 3kkz_A           98 VTGI---VGSMDDLPFRNEELDLIWSEGAIYNI-G---------------------------------FERGLNEWRKYL  140 (267)
T ss_dssp             EEEE---ECCTTSCCCCTTCEEEEEESSCGGGT-C---------------------------------HHHHHHHHGGGE
T ss_pred             cEEE---EcChhhCCCCCCCEEEEEEcCCceec-C---------------------------------HHHHHHHHHHHc
Confidence            2333   37888888999999999999999985 1                                 112333336778


Q ss_pred             ccCCeEEEEecccCCCCCCChhhhHHHH-------HHHHHHHHHHHccCcccccccceeccccccc
Q 024331          209 VAEGRMVLTFLGRKSQDPSSKECCYIWE-------LLATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~-------~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      +|||+++++.+.+....+.. ....+|.       ......+-|.+.|+   +.++.+.+|.-.|.
T Consensus       141 kpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGf---~~v~~~~~~~~~w~  202 (267)
T 3kkz_A          141 KKGGYLAVSECSWFTDERPA-EINDFWMDAYPEIDTIPNQVAKIHKAGY---LPVATFILPENCWT  202 (267)
T ss_dssp             EEEEEEEEEEEEESSSCCCH-HHHHHHHHHCTTCEEHHHHHHHHHHTTE---EEEEEEECCGGGTT
T ss_pred             CCCCEEEEEEeeecCCCChH-HHHHHHHHhCCCCCCHHHHHHHHHHCCC---EEEEEEECCHhHHH
Confidence            89999999998765443322 2223331       24566677788998   77788899988884

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.01  E-value=1.9e-09  Score=93.61  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=96.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++.       + .+|+..|+... .      +....+... ..+...   +-
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~--------~~~-------~-~~v~~vD~s~~-~------~~~a~~~~~-~~~~~~---~~   98 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLA--------DYV-------K-GQITGIDLFPD-F------IEIFNENAV-KANCAD---RV   98 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHC-------C-SEEEEEESCHH-H------HHHHHHHHH-HTTCTT---TE
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------HhC-------C-CeEEEEECCHH-H------HHHHHHHHH-HcCCCC---ce
Confidence            45799999999999988777        542       3 38999997654 0      111111111 112110   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .++   .+++....+|++++|++++..++||+ . |                 +               .+|+.=.+-|+
T Consensus        99 ~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~-~-~-----------------~---------------~~l~~~~~~L~  141 (257)
T 3f4k_A           99 KGI---TGSMDNLPFQNEELDLIWSEGAIYNI-G-F-----------------E---------------RGMNEWSKYLK  141 (257)
T ss_dssp             EEE---ECCTTSCSSCTTCEEEEEEESCSCCC-C-H-----------------H---------------HHHHHHHTTEE
T ss_pred             EEE---ECChhhCCCCCCCEEEEEecChHhhc-C-H-----------------H---------------HHHHHHHHHcC
Confidence            333   48888888999999999999999995 1 0                 1               12222256788


Q ss_pred             cCCeEEEEecccCCCCCCChhhhHHHH-------HHHHHHHHHHHccCcccccccceeccccccc
Q 024331          210 AEGRMVLTFLGRKSQDPSSKECCYIWE-------LLATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~~~~~~-------~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      |||+++++.+.+....+.. ....+|.       .......-|.+.|+   +.++.+.+|...|.
T Consensus       142 pgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGf---~~v~~~~~~~~~w~  202 (257)
T 3f4k_A          142 KGGFIAVSEASWFTSERPA-EIEDFWMDAYPEISVIPTCIDKMERAGY---TPTAHFILPENCWT  202 (257)
T ss_dssp             EEEEEEEEEEEESSSCCCH-HHHHHHHHHCTTCCBHHHHHHHHHHTTE---EEEEEEECCGGGTC
T ss_pred             CCcEEEEEEeeccCCCChH-HHHHHHHHhCCCCCCHHHHHHHHHHCCC---eEEEEEECChhhHH
Confidence            9999999998765443222 2222332       24556667788898   77778999988884

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.00  E-value=5.4e-09  Score=89.71  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=74.4

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .++.+|+|+|||+|..+..++        +++       |..+|+..|+...          +. +..+++... .   +
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~----------~~-~~a~~~~~~-~---~   92 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLM--------EKY-------PEATFTLVDMSEK----------ML-EIAKNRFRG-N---L   92 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEESCHH----------HH-HHHHHHTCS-C---T
T ss_pred             CCCCeEEEecCCCCHHHHHHH--------HhC-------CCCeEEEEECCHH----------HH-HHHHHhhcc-C---C
Confidence            456899999999999988777        542       5689999998654          21 223322211 1   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                        -+..+.+++....++ +++|+++++.++||++.                               .+...+|+.=.+-|
T Consensus        93 --~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L  138 (234)
T 3dtn_A           93 --KVKYIEADYSKYDFE-EKYDMVVSALSIHHLED-------------------------------EDKKELYKRSYSIL  138 (234)
T ss_dssp             --TEEEEESCTTTCCCC-SCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             --CEEEEeCchhccCCC-CCceEEEEeCccccCCH-------------------------------HHHHHHHHHHHHhc
Confidence              122234888888888 99999999999999632                               11122333335667


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||+++++.....+
T Consensus       139 kpgG~l~~~~~~~~~  153 (234)
T 3dtn_A          139 KESGIFINADLVHGE  153 (234)
T ss_dssp             EEEEEEEEEEECBCS
T ss_pred             CCCcEEEEEEecCCC
Confidence            799999999876643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.94  E-value=1.1e-09  Score=97.89  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=70.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|..+..+.        ++         -.+|+..|+...          ++.    ..... .   +-
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~--------~~---------~~~v~gvD~s~~----------ml~----~a~~~-~---~v   83 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLA--------EF---------FERVHAVDPGEA----------QIR----QALRH-P---RV   83 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHH--------TT---------CSEEEEEESCHH----------HHH----TCCCC-T---TE
T ss_pred             CCCCEEEEcCCCCHHHHHHH--------Hh---------CCEEEEEeCcHH----------hhh----hhhhc-C---Cc
Confidence            34689999999999988776        33         257899997654          321    11111 0   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++....||++|+|+++++.++||+..                   +.               ||+.=+|.||
T Consensus        84 ~~~~---~~~e~~~~~~~sfD~v~~~~~~h~~~~-------------------~~---------------~~~e~~rvLk  126 (257)
T 4hg2_A           84 TYAV---APAEDTGLPPASVDVAIAAQAMHWFDL-------------------DR---------------FWAELRRVAR  126 (257)
T ss_dssp             EEEE---CCTTCCCCCSSCEEEEEECSCCTTCCH-------------------HH---------------HHHHHHHHEE
T ss_pred             eeeh---hhhhhhcccCCcccEEEEeeehhHhhH-------------------HH---------------HHHHHHHHcC
Confidence            3433   788999999999999999999999521                   11               1111256788


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||+|++...+...
T Consensus       127 pgG~l~~~~~~~~~  140 (257)
T 4hg2_A          127 PGAVFAAVTYGLTR  140 (257)
T ss_dssp             EEEEEEEEEECCCB
T ss_pred             CCCEEEEEECCCCC
Confidence            99999998877654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.90  E-value=1.2e-09  Score=94.85  Aligned_cols=128  Identities=13%  Similarity=0.134  Sum_probs=84.9

Q ss_pred             CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331           15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL   94 (269)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~   94 (269)
                      ...|++.+..|......++       ..+   ....+.+|+|+|||+|..+..+.        +++       |..+|+.
T Consensus         8 ~~~y~~~~~~~~~~~~~l~-------~~~---~~~~~~~vLdiG~G~G~~~~~l~--------~~~-------~~~~v~~   62 (259)
T 2p35_A            8 AQQYLKFEDERTRPARDLL-------AQV---PLERVLNGYDLGCGPGNSTELLT--------DRY-------GVNVITG   62 (259)
T ss_dssp             CGGGBCCCCGGGHHHHHHH-------TTC---CCSCCSSEEEETCTTTHHHHHHH--------HHH-------CTTSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-------Hhc---CCCCCCEEEEecCcCCHHHHHHH--------HhC-------CCCEEEE
Confidence            4578887777766554321       111   12345799999999999988776        443       4578999


Q ss_pred             cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331           95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN  174 (269)
Q Consensus        95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~  174 (269)
                      .|+...          +. +..+++ ..     .-.|+.   +++...+ |++++|+++|+.++||+.+           
T Consensus        63 ~D~s~~----------~~-~~a~~~-~~-----~~~~~~---~d~~~~~-~~~~fD~v~~~~~l~~~~~-----------  110 (259)
T 2p35_A           63 IDSDDD----------ML-EKAADR-LP-----NTNFGK---ADLATWK-PAQKADLLYANAVFQWVPD-----------  110 (259)
T ss_dssp             EESCHH----------HH-HHHHHH-ST-----TSEEEE---CCTTTCC-CSSCEEEEEEESCGGGSTT-----------
T ss_pred             EECCHH----------HH-HHHHHh-CC-----CcEEEE---CChhhcC-ccCCcCEEEEeCchhhCCC-----------
Confidence            997654          21 112222 11     123444   6777766 8899999999999999632           


Q ss_pred             eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331          175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                                            ...+|+.=.+-|+|||+++++.++.
T Consensus       111 ----------------------~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A          111 ----------------------HLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             ----------------------HHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             ----------------------HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence                                  2234444478899999999998654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.90  E-value=4.5e-09  Score=93.95  Aligned_cols=111  Identities=18%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..++.++        +++     ..|.++|+..|+...          ++ +..+++. ..+.  ..
T Consensus        70 ~~~~vLDlGcGtG~~~~~la--------~~~-----~~~~~~v~gvD~s~~----------ml-~~A~~~~~~~~~--~~  123 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNSPA----------MI-ERCRRHIDAYKA--PT  123 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHH--------HTC-----CSSSCEEEEEESCHH----------HH-HHHHHHHHTSCC--SS
T ss_pred             CCCEEEEEeCCCCHHHHHHH--------Hhc-----CCCCCEEEEEECCHH----------HH-HHHHHHHHhhcc--Cc
Confidence            45799999999999988776        543     346789999998765          32 2233221 1111  01


Q ss_pred             ce-EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QC-FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~-f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      ++ |+.   +++.+..+  .+.|+++|+++|||++.                               .|...+|+.=.+-
T Consensus       124 ~v~~~~---~D~~~~~~--~~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~  167 (261)
T 4gek_A          124 PVDVIE---GDIRDIAI--ENASMVVLNFTLQFLEP-------------------------------SERQALLDKIYQG  167 (261)
T ss_dssp             CEEEEE---SCTTTCCC--CSEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHH
T ss_pred             eEEEee---cccccccc--cccccceeeeeeeecCc-------------------------------hhHhHHHHHHHHH
Confidence            22 433   78877555  56899999999999632                               1222334433567


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||+|+++.....
T Consensus       168 LkpGG~lii~e~~~~  182 (261)
T 4gek_A          168 LNPGGALVLSEKFSF  182 (261)
T ss_dssp             EEEEEEEEEEEEBCC
T ss_pred             cCCCcEEEEEeccCC
Confidence            889999999876554

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.85  E-value=1.3e-08  Score=91.09  Aligned_cols=114  Identities=14%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcc--eEEecCCCCCchHHHHHhhHHHHHHHHHhc-C-CCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEF--QVFLNDLPGNDFNTIFRSLASFQKILRKQL-G-SASG  125 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~--qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~-~~~~  125 (269)
                      ...+|+|+|||+|..|+.+++.    +..++       |.+  .++..|...+          ++. .++++. . .+. 
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~----l~~~~-------~~~~v~~~~vD~S~~----------ml~-~a~~~~~~~~~~-  108 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSK----VQAQY-------PGVCINNEVVEPSAE----------QIA-KYKELVAKTSNL-  108 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHH----HHHHS-------TTCEEEEEEECSCHH----------HHH-HHHHHHHTCSSC-
T ss_pred             CCCeEEEEcCCCCHHHHHHHHH----HHhhC-------CCceeeEEEEeCCHH----------HHH-HHHHHHHhccCC-
Confidence            4689999999999766655532    33332       345  4489997665          332 122221 1 111 


Q ss_pred             CCCceEEeecCCCccC------CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHH
Q 024331          126 AAGQCFFTGVPGSFYG------RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSL  199 (269)
Q Consensus       126 ~~~~~f~~~vpgSFy~------~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~  199 (269)
                        .++-+.-..++...      +.|+++++|+++++.+|||+.+.+                                 .
T Consensus       109 --~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~---------------------------------~  153 (292)
T 2aot_A          109 --ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP---------------------------------A  153 (292)
T ss_dssp             --TTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHH---------------------------------H
T ss_pred             --CcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHH---------------------------------H
Confidence              22322222344433      237899999999999999964421                                 1


Q ss_pred             HHhhhhhhhccCCeEEEEeccc
Q 024331          200 FLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       200 FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      +|+.=++-|||||+++++....
T Consensus       154 ~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          154 TLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             HHHHHHHTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHcCCCcEEEEEEecC
Confidence            2222256788999999987653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.79  E-value=5.5e-08  Score=85.24  Aligned_cols=111  Identities=14%  Similarity=0.089  Sum_probs=74.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++        ..+|+..|+... .      +........ ..+..    .+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~gvD~s~~-~------~~~a~~~~~-~~~~~----~~  112 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLA--------TAR--------DVRVTGISISRP-Q------VNQANARAT-AAGLA----NR  112 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHS--------CCEEEEEESCHH-H------HHHHHHHHH-HTTCT----TT
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------Hhc--------CCEEEEEeCCHH-H------HHHHHHHHH-hcCCC----cc
Confidence            46799999999999988776        432        368899987654 0      111111111 11211    11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.+++....||++++|+++|..++||+.+                                 ...+|+.=++.|+
T Consensus       113 --~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~L~  157 (273)
T 3bus_A          113 --VTFSYADAMDLPFEDASFDAVWALESLHHMPD---------------------------------RGRALREMARVLR  157 (273)
T ss_dssp             --EEEEECCTTSCCSCTTCEEEEEEESCTTTSSC---------------------------------HHHHHHHHHTTEE
T ss_pred             --eEEEECccccCCCCCCCccEEEEechhhhCCC---------------------------------HHHHHHHHHHHcC
Confidence              22234888888899999999999999999632                                 1233444467888


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||+++++.+....
T Consensus       158 pgG~l~i~~~~~~~  171 (273)
T 3bus_A          158 PGGTVAIADFVLLA  171 (273)
T ss_dssp             EEEEEEEEEEEESS
T ss_pred             CCeEEEEEEeeccC
Confidence            99999999887653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.78  E-value=9.8e-09  Score=89.11  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=68.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..+++.....  .+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~~~~~~--~~   87 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLI--------AR---------GYRYIALDADAA----------ML-EVFRQKIAGVD--RK   87 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHH--------TT---------TCEEEEEESCHH----------HH-HHHHHHTTTSC--TT
T ss_pred             CCCCEEEEeCCcCCHHHHHHH--------HC---------CCEEEEEECCHH----------HH-HHHHHHhhccC--Cc
Confidence            346799999999999988776        22         257899987654          21 22222211101  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|   +.+++....+|++++|+++++.++||+.+                                 ...+|+.=.+-|
T Consensus        88 ~~~---~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~L  131 (263)
T 2yqz_A           88 VQV---VQADARAIPLPDESVHGVIVVHLWHLVPD---------------------------------WPKVLAEAIRVL  131 (263)
T ss_dssp             EEE---EESCTTSCCSCTTCEEEEEEESCGGGCTT---------------------------------HHHHHHHHHHHE
T ss_pred             eEE---EEcccccCCCCCCCeeEEEECCchhhcCC---------------------------------HHHHHHHHHHHC
Confidence            133   34788888899999999999999999642                                 112233335677


Q ss_pred             ccCCeEEEEe
Q 024331          209 VAEGRMVLTF  218 (269)
Q Consensus       209 ~pGG~lv~~~  218 (269)
                      +|||++++++
T Consensus       132 ~pgG~l~~~~  141 (263)
T 2yqz_A          132 KPGGALLEGW  141 (263)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEe
Confidence            8999999983

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.77  E-value=1.5e-08  Score=86.41  Aligned_cols=81  Identities=12%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCC------
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSA------  123 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~------  123 (269)
                      ...+|+|+|||+|.++..++        ++         ..+|+..|+...          ++. ..+++.+..      
T Consensus        22 ~~~~vLD~GCG~G~~~~~la--------~~---------g~~V~gvD~S~~----------~l~-~a~~~~~~~~~~~~~   73 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLS--------GQ---------GYHVVGAELSEA----------AVE-RYFTERGEQPHITSQ   73 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHH--------HH---------CCEEEEEEECHH----------HHH-HHHHHHCSCSEEEEE
T ss_pred             CCCEEEEeCCCCcHhHHHHH--------HC---------CCeEEEEeCCHH----------HHH-HHHHHccCCcccccc
Confidence            46799999999999998777        43         268999998876          332 233322110      


Q ss_pred             -----CCCCCceEEeecCCCccCCCCCC-CceeeEecccccccc
Q 024331          124 -----SGAAGQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWL  161 (269)
Q Consensus       124 -----~~~~~~~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWL  161 (269)
                           +...+--|+.   +++....+++ +++|++++..++|++
T Consensus        74 ~~~~~~~~~~v~~~~---~d~~~l~~~~~~~fD~v~~~~~l~~l  114 (203)
T 1pjz_A           74 GDFKVYAAPGIEIWC---GDFFALTARDIGHCAAFYDRAAMIAL  114 (203)
T ss_dssp             TTEEEEECSSSEEEE---ECCSSSTHHHHHSEEEEEEESCGGGS
T ss_pred             cccccccCCccEEEE---CccccCCcccCCCEEEEEECcchhhC
Confidence                 0000113444   7888888776 899999999999986

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.77  E-value=9e-08  Score=85.17  Aligned_cols=111  Identities=15%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++        ..+|+..|+... .      +....+... ..+...   .-
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~gvD~s~~-~------~~~a~~~~~-~~~~~~---~~  134 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLV--------RKF--------GVSIDCLNIAPV-Q------NKRNEEYNN-QAGLAD---NI  134 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHH-H------HHHHHHHHH-HHTCTT---TE
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHh--------CCEEEEEeCCHH-H------HHHHHHHHH-hcCCCc---ce
Confidence            46799999999999988776        443        158899988654 1      111111111 112110   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|   +.+++...+||++++|++++..++|++..                                 ...+|+.=++-|+
T Consensus       135 ~~---~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~Lk  178 (297)
T 2o57_A          135 TV---KYGSFLEIPCEDNSYDFIWSQDAFLHSPD---------------------------------KLKVFQECARVLK  178 (297)
T ss_dssp             EE---EECCTTSCSSCTTCEEEEEEESCGGGCSC---------------------------------HHHHHHHHHHHEE
T ss_pred             EE---EEcCcccCCCCCCCEeEEEecchhhhcCC---------------------------------HHHHHHHHHHHcC
Confidence            23   34788998999999999999999998643                                 1122233356778


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||+++++.+....
T Consensus       179 pgG~l~~~~~~~~~  192 (297)
T 2o57_A          179 PRGVMAITDPMKED  192 (297)
T ss_dssp             EEEEEEEEEEEECT
T ss_pred             CCeEEEEEEeccCC
Confidence            99999999887654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.76  E-value=4.3e-08  Score=82.22  Aligned_cols=81  Identities=16%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +-+|+|+|||+|..+..+.        ++        |..+|+..|+...       .+......+.. .+...   +-.
T Consensus        44 ~~~vLdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~s~~-------~~~~a~~~~~~-~~~~~---~~~   96 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALA--------KQ--------SDFSIRALDFSKH-------MNEIALKNIAD-ANLND---RIQ   96 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHH--------HH--------SEEEEEEEESCHH-------HHHHHHHHHHH-TTCTT---TEE
T ss_pred             CCEEEEECCCCCHHHHHHH--------Hc--------CCCeEEEEECCHH-------HHHHHHHHHHh-ccccC---ceE
Confidence            3499999999999887776        33        4589999997543       01111111111 11110   113


Q ss_pred             EEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      |+.   +++....+|++++|+++++.++||+
T Consensus        97 ~~~---~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           97 IVQ---GDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEE---CBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             EEE---cCHHHCCCCcccccEEEECchHhhc
Confidence            333   7888888999999999999999996

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.75  E-value=8.6e-08  Score=86.45  Aligned_cols=118  Identities=15%  Similarity=0.169  Sum_probs=71.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~  127 (269)
                      +++.+|+|+|||+|..+..+.        +.        +..+|+..|+...       .+....+.+..... ..-  .
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~--------~~--------~~~~v~gvD~s~~-------~l~~a~~~~~~~~~~~~~--~   87 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWK--------KG--------RINKLVCTDIADV-------SVKQCQQRYEDMKNRRDS--E   87 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHH--------HT--------TCSEEEEEESCHH-------HHHHHHHHHHHHHSSSCC---
T ss_pred             CCCCEEEEECCCCcHHHHHHH--------hc--------CCCEEEEEeCCHH-------HHHHHHHHHHHhhhcccc--c
Confidence            356799999999999987666        32        3468999998764       11111111111100 000  0


Q ss_pred             CceEEeecCCCccCCC----CC--CCceeeEecccccccc-ccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHH
Q 024331          128 GQCFFTGVPGSFYGRL----FP--RNSVHLFHSSYSLQWL-SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLF  200 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~l----fP--~~Svd~~~Ss~alHWL-S~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F  200 (269)
                      ...-+..+.+++....    |+  ++++|+++|+.++||+ ...                              .|...+
T Consensus        88 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~------------------------------~~~~~~  137 (313)
T 3bgv_A           88 YIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESY------------------------------EQADMM  137 (313)
T ss_dssp             CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSH------------------------------HHHHHH
T ss_pred             ccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCH------------------------------HHHHHH
Confidence            0011222336776654    64  4599999999999997 221                              234455


Q ss_pred             HhhhhhhhccCCeEEEEeccc
Q 024331          201 LKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       201 L~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      |+.=++-|+|||++++++++.
T Consensus       138 l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          138 LRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             HHHHHTTEEEEEEEEEEEECH
T ss_pred             HHHHHHHhCCCcEEEEecCCh
Confidence            555577889999999998754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.75  E-value=1.1e-07  Score=79.78  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++..+        ..        +..+|+..|.... .      +....+.... .+..     -
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~--------~~--------~~~~v~~vD~s~~-~------~~~a~~~~~~-~~~~-----~   73 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIF--------VE--------DGYKTYGIEISDL-Q------LKKAENFSRE-NNFK-----L   73 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHH--------HH--------TTCEEEEEECCHH-H------HHHHHHHHHH-HTCC-----C
T ss_pred             CCCEEEEECCCCCHHHHHHH--------Hh--------CCCEEEEEECCHH-H------HHHHHHHHHh-cCCc-----e
Confidence            45799999999999876554        22        2368999997654 0      1111111111 1211     1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .++.   +++....+|++++|+++++.++|+++.                               .|...+|+.=++-|+
T Consensus        74 ~~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~Lk  119 (209)
T 2p8j_A           74 NISK---GDIRKLPFKDESMSFVYSYGTIFHMRK-------------------------------NDVKEAIDEIKRVLK  119 (209)
T ss_dssp             CEEE---CCTTSCCSCTTCEEEEEECSCGGGSCH-------------------------------HHHHHHHHHHHHHEE
T ss_pred             EEEE---CchhhCCCCCCceeEEEEcChHHhCCH-------------------------------HHHHHHHHHHHHHcC
Confidence            3433   677777889999999999988888521                               233444444466788


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++++..+....
T Consensus       120 pgG~l~~~~~~~~~  133 (209)
T 2p8j_A          120 PGGLACINFLTTKD  133 (209)
T ss_dssp             EEEEEEEEEEETTS
T ss_pred             CCcEEEEEEecccc
Confidence            99999999987643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.73  E-value=6.8e-08  Score=83.72  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..++        +++        ..+|+..|+...          +. +..+++.....   .
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~--------~~~--------~~~v~~vD~s~~----------~~-~~a~~~~~~~~---~  103 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYIN--------EKY--------GAHTHGIDICSN----------IV-NMANERVSGNN---K  103 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHH----------HH-HHHHHTCCSCT---T
T ss_pred             CCCCEEEEECCCCCHHHHHHH--------HHc--------CCEEEEEeCCHH----------HH-HHHHHHhhcCC---C
Confidence            346799999999999988777        443        268899997654          22 22332221100   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|+   .+++....+|++++|++++..++|+++.                               .|...+|+.=.+-|
T Consensus       104 ~~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L  149 (266)
T 3ujc_A          104 IIFE---ANDILTKEFPENNFDLIYSRDAILALSL-------------------------------ENKNKLFQKCYKWL  149 (266)
T ss_dssp             EEEE---ECCTTTCCCCTTCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             eEEE---ECccccCCCCCCcEEEEeHHHHHHhcCh-------------------------------HHHHHHHHHHHHHc
Confidence            1333   3788888899999999999999999621                               23344555556778


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||+++++.+....
T Consensus       150 ~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          150 KPTGTLLITDYCATE  164 (266)
T ss_dssp             EEEEEEEEEEEEESC
T ss_pred             CCCCEEEEEEeccCC
Confidence            899999999887654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.72  E-value=1.2e-08  Score=88.37  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=69.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ++..+|+|+|||+|..+..+.        ++         ..+|+..|+...          +. +..++          
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~~-~~a~~----------   81 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCK--------EE---------GIESIGVDINED----------MI-KFCEG----------   81 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHH--------HH---------TCCEEEECSCHH----------HH-HHHHT----------
T ss_pred             cCCCeEEEEeCCCCHHHHHHH--------hC---------CCcEEEEECCHH----------HH-HHHHh----------
Confidence            346899999999999877655        32         256888887543          21 11221          


Q ss_pred             ceEEeecCCCccCC--CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 QCFFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~~f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      .  +..+.+++...  .||++++|+++|+.++||+..                               .|+..+|+.=.+
T Consensus        82 ~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~-------------------------------~~~~~~l~~~~~  128 (240)
T 3dli_A           82 K--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP-------------------------------ERLFELLSLCYS  128 (240)
T ss_dssp             T--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG-------------------------------GGHHHHHHHHHH
T ss_pred             h--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc-------------------------------HHHHHHHHHHHH
Confidence            1  12233566553  789999999999999999642                               123344444467


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      -|+|||++++..+...
T Consensus       129 ~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A          129 KMKYSSYIVIESPNPT  144 (240)
T ss_dssp             HBCTTCCEEEEEECTT
T ss_pred             HcCCCcEEEEEeCCcc
Confidence            7889999999988654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.72  E-value=8e-08  Score=85.14  Aligned_cols=144  Identities=13%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +..   |   |+-.||..|....          +.. .+++.... .  ..-
T Consensus        77 pG~~VldlG~G~G~~~~~la--------~~V---G---~~G~V~avD~s~~----------~~~-~l~~~a~~-~--~ni  128 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMS--------DII---G---PRGRIYGVEFAPR----------VMR-DLLTVVRD-R--RNI  128 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH---C---TTCEEEEEECCHH----------HHH-HHHHHSTT-C--TTE
T ss_pred             CCCEEEEecCcCCHHHHHHH--------HHh---C---CCceEEEEeCCHH----------HHH-HHHHhhHh-h--cCe
Confidence            45899999999999999887        543   1   6688999987654          222 23332211 1  012


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      ..+.+..+......++.+++|++++..+.||-                            .+++.+..       .+-||
T Consensus       129 ~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~----------------------------~~~~l~~~-------~r~LK  173 (233)
T 4df3_A          129 FPILGDARFPEKYRHLVEGVDGLYADVAQPEQ----------------------------AAIVVRNA-------RFFLR  173 (233)
T ss_dssp             EEEESCTTCGGGGTTTCCCEEEEEECCCCTTH----------------------------HHHHHHHH-------HHHEE
T ss_pred             eEEEEeccCccccccccceEEEEEEeccCChh----------------------------HHHHHHHH-------HHhcc
Confidence            56666677777778888999999986555540                            11122333       34456


Q ss_pred             cCCeEEEEecccCCC--CCCChhhhHHHHHHHHHHHHHHHccCcccccccceecccccc
Q 024331          210 AEGRMVLTFLGRKSQ--DPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNYKL  266 (269)
Q Consensus       210 pGG~lv~~~~g~~~~--~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~  266 (269)
                      |||++++++-.+..+  .+..       ..+++..+.|.+.|+   +.++..+|.-|.|
T Consensus       174 pGG~lvI~ik~r~~d~~~p~~-------~~~~~ev~~L~~~GF---~l~e~i~L~pf~~  222 (233)
T 4df3_A          174 DGGYMLMAIKARSIDVTTEPS-------EVYKREIKTLMDGGL---EIKDVVHLDPFDR  222 (233)
T ss_dssp             EEEEEEEEEECCHHHHHTCCC-------HHHHHHHHHHHHTTC---CEEEEEECTTTST
T ss_pred             CCCEEEEEEecccCCCCCChH-------HHHHHHHHHHHHCCC---EEEEEEccCCCCC
Confidence            999999987655421  1111       345778889999999   5455555655554

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.72  E-value=5.2e-08  Score=85.10  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=68.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        ++.         .+|+..|+... .      +....+... +.+..    .-
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~--------~~~---------~~v~gvD~s~~-~------l~~a~~~~~-~~~~~----~v   87 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFA--------PFV---------KKVVAFDLTED-I------LKVARAFIE-GNGHQ----QV   87 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHG--------GGS---------SEEEEEESCHH-H------HHHHHHHHH-HTTCC----SE
T ss_pred             CCCEEEEEeCCCCHHHHHHH--------HhC---------CEEEEEeCCHH-H------HHHHHHHHH-hcCCC----ce
Confidence            46799999999999877665        321         28899997653 1      111111111 11210    11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|   +.+++....||++++|+++|+.++||+.+.+                                 .+|+.=.+-|+
T Consensus        88 ~~---~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~---------------------------------~~l~~~~r~Lk  131 (260)
T 1vl5_A           88 EY---VQGDAEQMPFTDERFHIVTCRIAAHHFPNPA---------------------------------SFVSEAYRVLK  131 (260)
T ss_dssp             EE---EECCC-CCCSCTTCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHHEE
T ss_pred             EE---EEecHHhCCCCCCCEEEEEEhhhhHhcCCHH---------------------------------HHHHHHHHHcC
Confidence            33   3478888899999999999999999974311                                 12222256677


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++.....
T Consensus       132 pgG~l~~~~~~~~  144 (260)
T 1vl5_A          132 KGGQLLLVDNSAP  144 (260)
T ss_dssp             EEEEEEEEEEEBC
T ss_pred             CCCEEEEEEcCCC
Confidence            9999999866543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.71  E-value=1.6e-07  Score=81.35  Aligned_cols=110  Identities=15%  Similarity=0.045  Sum_probs=69.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++        ..+|+..|+... +      +....+... ..+..    .+
T Consensus        36 ~~~~VLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~-~------l~~a~~~~~-~~~~~----~~   87 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWA--------RDH--------GITGTGIDMSSL-F------TAQAKRRAE-ELGVS----ER   87 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HHT--------CCEEEEEESCHH-H------HHHHHHHHH-HTTCT----TT
T ss_pred             CCCEEEEECCCCCHHHHHHH--------Hhc--------CCeEEEEeCCHH-H------HHHHHHHHH-hcCCC----cc
Confidence            45799999999999888776        442        257888887653 1      111111111 11211    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +  ..+.+++...++ ++++|+++|..++|++..                  +..+.+..               ++-|+
T Consensus        88 v--~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~------------------~~~~l~~~---------------~r~Lk  131 (256)
T 1nkv_A           88 V--HFIHNDAAGYVA-NEKCDVAACVGATWIAGG------------------FAGAEELL---------------AQSLK  131 (256)
T ss_dssp             E--EEEESCCTTCCC-SSCEEEEEEESCGGGTSS------------------SHHHHHHH---------------TTSEE
T ss_pred             e--EEEECChHhCCc-CCCCCEEEECCChHhcCC------------------HHHHHHHH---------------HHHcC
Confidence            2  223478888776 899999999999998643                  11222222               67788


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||+++++...+..
T Consensus       132 pgG~l~~~~~~~~~  145 (256)
T 1nkv_A          132 PGGIMLIGEPYWRQ  145 (256)
T ss_dssp             EEEEEEEEEEEETT
T ss_pred             CCeEEEEecCcccC
Confidence            99999998876543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.71  E-value=1e-07  Score=80.71  Aligned_cols=137  Identities=13%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++.      .|..+|+..|+...       .+......+.. .+..    .-
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~--------~~~------~~~~~v~~vD~s~~-------~~~~a~~~~~~-~~~~----~~   90 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLS--------KMV------GEKGKVYAIDVQEE-------MVNYAWEKVNK-LGLK----NV   90 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHH--------HHH------TTTCEEEEEESCHH-------HHHHHHHHHHH-HTCT----TE
T ss_pred             CCCEEEEEecCCCHHHHHHH--------HHh------CCCcEEEEEECCHH-------HHHHHHHHHHH-cCCC----cE
Confidence            45799999999999998877        443      25679999997554       01111111111 1210    11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+   .+++....++++++|+++++.++||+.+                  +               ..+|+.=.+-|+
T Consensus        91 ~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------~---------------~~~l~~~~~~Lk  134 (219)
T 3dh0_A           91 EVL---KSEENKIPLPDNTVDFIFMAFTFHELSE------------------P---------------LKFLEELKRVAK  134 (219)
T ss_dssp             EEE---ECBTTBCSSCSSCEEEEEEESCGGGCSS------------------H---------------HHHHHHHHHHEE
T ss_pred             EEE---ecccccCCCCCCCeeEEEeehhhhhcCC------------------H---------------HHHHHHHHHHhC
Confidence            333   3788888899999999999999999632                  1               122222245677


Q ss_pred             cCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccC
Q 024331          210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVT  250 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~  250 (269)
                      |||.++++............ ....+ ......+.|.+.|+
T Consensus       135 pgG~l~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~Gf  173 (219)
T 3dh0_A          135 PFAYLAIIDWKKEERDKGPP-PEEVY-SEWEVGLILEDAGI  173 (219)
T ss_dssp             EEEEEEEEEECSSCCSSSCC-GGGSC-CHHHHHHHHHHTTC
T ss_pred             CCeEEEEEEecccccccCCc-hhccc-CHHHHHHHHHHCCC
Confidence            99999999876654311111 11111 23444455566787

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.71  E-value=5.6e-08  Score=86.15  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=70.3

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGA  126 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~  126 (269)
                      .+++.+|+|+|||+|..+..++        +.         ..+|+..|+...          +. +..++.. ..+.  
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~~-~~a~~~~~~~~~--  115 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMA--------ER---------GHQVILCDLSAQ----------MI-DRAKQAAEAKGV--  115 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHHHHHC-CC--
T ss_pred             CCCCCEEEEeCCcchHHHHHHH--------HC---------CCEEEEEECCHH----------HH-HHHHHHHHhcCC--
Confidence            3346899999999999887766        32         268999998654          11 1122111 1111  


Q ss_pred             CCc-eEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          127 AGQ-CFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       127 ~~~-~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                      ..+ .|+.   +++.... ++++++|++++..++||+.+.                                 ..+|+.=
T Consensus       116 ~~~v~~~~---~d~~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~  159 (285)
T 4htf_A          116 SDNMQFIH---CAAQDVASHLETPVDLILFHAVLEWVADP---------------------------------RSVLQTL  159 (285)
T ss_dssp             GGGEEEEE---SCGGGTGGGCSSCEEEEEEESCGGGCSCH---------------------------------HHHHHHH
T ss_pred             CcceEEEE---cCHHHhhhhcCCCceEEEECchhhcccCH---------------------------------HHHHHHH
Confidence            011 2333   7887777 899999999999999996321                                 1223333


Q ss_pred             hhhhccCCeEEEEeccc
Q 024331          205 SEELVAEGRMVLTFLGR  221 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~  221 (269)
                      ++-|+|||++++.....
T Consensus       160 ~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          160 WSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             HHTEEEEEEEEEEEEBH
T ss_pred             HHHcCCCeEEEEEEeCC
Confidence            56788999999998754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.70  E-value=8.6e-08  Score=86.53  Aligned_cols=110  Identities=15%  Similarity=0.080  Sum_probs=72.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +++        ..+|+..|+...       .+....+... +.+...   .-
T Consensus       117 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~-------~~~~a~~~~~-~~~~~~---~v  169 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAH--------RRF--------GSRVEGVTLSAA-------QADFGNRRAR-ELRIDD---HV  169 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH--------CCEEEEEESCHH-------HHHHHHHHHH-HTTCTT---TE
T ss_pred             CCCEEEEecCCCCHHHHHHH--------HHc--------CCEEEEEeCCHH-------HHHHHHHHHH-HcCCCC---ce
Confidence            46799999999999988777        442        267889987554       0111111111 112110   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++....||++++|++++..++||+.  +                                ..+|+.=.+-|+
T Consensus       170 ~~~~---~d~~~~~~~~~~fD~V~~~~~l~~~~--~--------------------------------~~~l~~~~~~Lk  212 (312)
T 3vc1_A          170 RSRV---CNMLDTPFDKGAVTASWNNESTMYVD--L--------------------------------HDLFSEHSRFLK  212 (312)
T ss_dssp             EEEE---CCTTSCCCCTTCEEEEEEESCGGGSC--H--------------------------------HHHHHHHHHHEE
T ss_pred             EEEE---CChhcCCCCCCCEeEEEECCchhhCC--H--------------------------------HHHHHHHHHHcC
Confidence            3433   88888889999999999999999962  1                                112222256678


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++++.......
T Consensus       213 pgG~l~~~~~~~~~  226 (312)
T 3vc1_A          213 VGGRYVTITGCWNP  226 (312)
T ss_dssp             EEEEEEEEEEEECT
T ss_pred             CCcEEEEEEccccc
Confidence            99999999877664

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.70  E-value=8.1e-08  Score=80.80  Aligned_cols=105  Identities=11%  Similarity=0.094  Sum_probs=70.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        ++         ..+|+..|+...          +. +..++ .+..    .-
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~~D~s~~----------~~-~~a~~-~~~~----~~   92 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLS--------GL---------ADRVTALDGSAE----------MI-AEAGR-HGLD----NV   92 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHH--------HH---------SSEEEEEESCHH----------HH-HHHGG-GCCT----TE
T ss_pred             CCCeEEEECCCCCHHHHHHH--------hc---------CCeEEEEeCCHH----------HH-HHHHh-cCCC----Ce
Confidence            34699999999999888776        33         257888887543          21 11222 2210    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++... +|++++|+++++.++|++..                               .++..+|+.=.+-|+
T Consensus        93 ~~~~---~d~~~~-~~~~~~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~  137 (218)
T 3ou2_A           93 EFRQ---QDLFDW-TPDRQWDAVFFAHWLAHVPD-------------------------------DRFEAFWESVRSAVA  137 (218)
T ss_dssp             EEEE---CCTTSC-CCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEE
T ss_pred             EEEe---cccccC-CCCCceeEEEEechhhcCCH-------------------------------HHHHHHHHHHHHHcC
Confidence            3333   777766 89999999999999999532                               122334444456778


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||.++++...+.
T Consensus       138 pgG~l~~~~~~~~  150 (218)
T 3ou2_A          138 PGGVVEFVDVTDH  150 (218)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             CCeEEEEEeCCCC
Confidence            9999999988763

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.66  E-value=1.3e-08  Score=90.18  Aligned_cols=127  Identities=18%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             CchHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331           15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL   94 (269)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~   94 (269)
                      +..|.++...|......+...+          ......+|+|+|||+|..+..++        +         +..+|+.
T Consensus        32 a~~y~~~~~~~~~~~~~l~~~l----------~~~~~~~vLDiGcG~G~~~~~l~--------~---------~~~~v~g   84 (279)
T 3ccf_A           32 ATLYQDKHSFVWQYGEDLLQLL----------NPQPGEFILDLGCGTGQLTEKIA--------Q---------SGAEVLG   84 (279)
T ss_dssp             ---------CCSSSCCHHHHHH----------CCCTTCEEEEETCTTSHHHHHHH--------H---------TTCEEEE
T ss_pred             HHHHhhcchHHHHHHHHHHHHh----------CCCCCCEEEEecCCCCHHHHHHH--------h---------CCCeEEE
Confidence            4567766655543333322211          12245799999999999888766        2         2478999


Q ss_pred             cCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcc
Q 024331           95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN  174 (269)
Q Consensus        95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~  174 (269)
                      .|+...          +. +..+++. .     +-.|+.   +++....+ ++++|+++++.++||+.+           
T Consensus        85 vD~s~~----------~~-~~a~~~~-~-----~~~~~~---~d~~~~~~-~~~fD~v~~~~~l~~~~d-----------  132 (279)
T 3ccf_A           85 TDNAAT----------MI-EKARQNY-P-----HLHFDV---ADARNFRV-DKPLDAVFSNAMLHWVKE-----------  132 (279)
T ss_dssp             EESCHH----------HH-HHHHHHC-T-----TSCEEE---CCTTTCCC-SSCEEEEEEESCGGGCSC-----------
T ss_pred             EECCHH----------HH-HHHHhhC-C-----CCEEEE---CChhhCCc-CCCcCEEEEcchhhhCcC-----------
Confidence            997543          21 1122221 1     123444   67777665 589999999999999642           


Q ss_pred             eEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       175 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                                            ...+|+.=++.|+|||++++.+.+..
T Consensus       133 ----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          133 ----------------------PEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             ----------------------HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             ----------------------HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence                                  11223333567889999999887654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.65  E-value=1.1e-07  Score=80.69  Aligned_cols=113  Identities=15%  Similarity=0.014  Sum_probs=70.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..+.        ++.       |..+|+..|+...          +. +..+++.. .++....
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~--------~~~-------~~~~v~gvD~s~~----------~~-~~a~~~~~~~~~~~~~   82 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILL--------KDS-------FFEQITGVDVSYR----------SL-EIAQERLDRLRLPRNQ   82 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHH--------HCT-------TCSEEEEEESCHH----------HH-HHHHHHHTTCCCCHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------hhC-------CCCEEEEEECCHH----------HH-HHHHHHHHHhcCCccc
Confidence            35799999999999888766        432       4579999998654          21 11222111 1110000


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      ..-+..+-+++....++.+++|+++++.++||+..                               .++..+|+.=.+-|
T Consensus        83 ~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L  131 (217)
T 3jwh_A           83 WERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDL-------------------------------SRLGAFERVLFEFA  131 (217)
T ss_dssp             HTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCH-------------------------------HHHHHHHHHHHTTT
T ss_pred             CcceEEEeCCcccccccCCCcCEEeeHHHHHcCCH-------------------------------HHHHHHHHHHHHHc
Confidence            00122233677777778899999999999999622                               23445566557788


Q ss_pred             ccCCeEEEEec
Q 024331          209 VAEGRMVLTFL  219 (269)
Q Consensus       209 ~pGG~lv~~~~  219 (269)
                      +|||+++++..
T Consensus       132 kpgG~li~~~~  142 (217)
T 3jwh_A          132 QPKIVIVTTPN  142 (217)
T ss_dssp             CCSEEEEEEEB
T ss_pred             CCCEEEEEccC
Confidence            99997776654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.65  E-value=7.5e-08  Score=83.59  Aligned_cols=104  Identities=17%  Similarity=0.264  Sum_probs=69.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..++        ++.       +. +|+..|+...          +. +..++.... .   .-
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~--------~~~-------~~-~v~~vD~s~~----------~~-~~a~~~~~~-~---~~   92 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAA--------EHG-------AK-KVLGIDLSER----------ML-TEAKRKTTS-P---VV   92 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HTT-------CS-EEEEEESCHH----------HH-HHHHHHCCC-T---TE
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HcC-------CC-EEEEEECCHH----------HH-HHHHHhhcc-C---Ce
Confidence            46899999999998877766        331       22 8899997543          21 223322211 0   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++....+|++++|+++++.++||+.+                                 ...+|+.=.+-|+
T Consensus        93 ~~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~Lk  136 (253)
T 3g5l_A           93 CYEQ---KAIEDIAIEPDAYNVVLSSLALHYIAS---------------------------------FDDICKKVYINLK  136 (253)
T ss_dssp             EEEE---CCGGGCCCCTTCEEEEEEESCGGGCSC---------------------------------HHHHHHHHHHHEE
T ss_pred             EEEE---cchhhCCCCCCCeEEEEEchhhhhhhh---------------------------------HHHHHHHHHHHcC
Confidence            3444   788888899999999999999999622                                 1122333356677


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||+++++...
T Consensus       137 pgG~l~~~~~~  147 (253)
T 3g5l_A          137 SSGSFIFSVEH  147 (253)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCcEEEEEeCC
Confidence            99999998654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.64  E-value=1.2e-07  Score=83.39  Aligned_cols=110  Identities=18%  Similarity=0.280  Sum_probs=71.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +...+|+|+|||+|..+..+.        ++.       |..+|+..|+..+=       +........ ..+..    .
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~~-------~~~a~~~~~-~~~~~----~   88 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILA--------KNN-------PDAEITSIDISPES-------LEKARENTE-KNGIK----N   88 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHH--------HHC-------TTSEEEEEESCHHH-------HHHHHHHHH-HTTCC----S
T ss_pred             CCCCeEEEecCCCCHHHHHHH--------HhC-------CCCEEEEEECCHHH-------HHHHHHHHH-HcCCC----C
Confidence            456899999999999887766        442       56899999986540       111111111 11110    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|+   .+++...++|++++|+++++.++||+.+.+                                 .+|+.=.+-|
T Consensus        89 ~~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~L  132 (276)
T 3mgg_A           89 VKFL---QANIFSLPFEDSSFDHIFVCFVLEHLQSPE---------------------------------EALKSLKKVL  132 (276)
T ss_dssp             EEEE---ECCGGGCCSCTTCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHHE
T ss_pred             cEEE---EcccccCCCCCCCeeEEEEechhhhcCCHH---------------------------------HHHHHHHHHc
Confidence            1333   378888899999999999999999964311                                 1122224567


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||.+++.....
T Consensus       133 ~pgG~l~~~~~~~  145 (276)
T 3mgg_A          133 KPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEEEEEEECG
T ss_pred             CCCcEEEEEEcCC
Confidence            7999999987654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.63  E-value=7e-08  Score=81.98  Aligned_cols=110  Identities=17%  Similarity=0.068  Sum_probs=70.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCC--
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGA--  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~--  126 (269)
                      ++.+|+|+|||+|..+..+.        ++       .|..+|+..|+...          +. +..+++.. .++..  
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~gvD~s~~----------~~-~~a~~~~~~~~~~~~~   82 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLL--------KD-------KSFEQITGVDVSYS----------VL-ERAKDRLKIDRLPEMQ   82 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHH--------TS-------TTCCEEEEEESCHH----------HH-HHHHHHHTGGGSCHHH
T ss_pred             CCCEEEEecCCCCHHHHHHH--------hc-------CCCCEEEEEECCHH----------HH-HHHHHHHHhhcccccc
Confidence            35799999999999887766        32       25589999998654          11 11211110 00000  


Q ss_pred             -CCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          127 -AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       127 -~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                       ..--|+.   +++....++++++|+++++.++|+++.                               .++..+|+.=+
T Consensus        83 ~~~v~~~~---~d~~~~~~~~~~fD~V~~~~~l~~~~~-------------------------------~~~~~~l~~~~  128 (219)
T 3jwg_A           83 RKRISLFQ---SSLVYRDKRFSGYDAATVIEVIEHLDE-------------------------------NRLQAFEKVLF  128 (219)
T ss_dssp             HTTEEEEE---CCSSSCCGGGTTCSEEEEESCGGGCCH-------------------------------HHHHHHHHHHH
T ss_pred             CcceEEEe---CcccccccccCCCCEEEEHHHHHhCCH-------------------------------HHHHHHHHHHH
Confidence             0012333   677777888899999999999999622                               23445565557


Q ss_pred             hhhccCCeEEEEec
Q 024331          206 EELVAEGRMVLTFL  219 (269)
Q Consensus       206 ~EL~pGG~lv~~~~  219 (269)
                      +-|+|||+++.+..
T Consensus       129 ~~LkpgG~~i~~~~  142 (219)
T 3jwg_A          129 EFTRPQTVIVSTPN  142 (219)
T ss_dssp             TTTCCSEEEEEEEB
T ss_pred             HhhCCCEEEEEccc
Confidence            88899996665543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.61  E-value=8.4e-08  Score=85.84  Aligned_cols=111  Identities=18%  Similarity=0.280  Sum_probs=71.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..++        +++      .+..+|+..|+... +      +....+......+...   +-
T Consensus        36 ~~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~-~------~~~a~~~~~~~~~~~~---~v   91 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMA--------QEL------KPFEQIIGSDLSAT-M------IKTAEVIKEGSPDTYK---NV   91 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHH--------HHS------SCCSEEEEEESCHH-H------HHHHHHHHHHCC-CCT---TE
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HhC------CCCCEEEEEeCCHH-H------HHHHHHHHHhccCCCC---ce
Confidence            56899999999999988777        432      24689999998654 1      1111111111101110   12


Q ss_pred             eEEeecCCCccCCCCCC------CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024331          130 CFFTGVPGSFYGRLFPR------NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC  203 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~------~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~  203 (269)
                      .|+.   +++....+++      +++|+++++.++||+ +                                 +..+|+.
T Consensus        92 ~~~~---~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~---------------------------------~~~~l~~  134 (299)
T 3g5t_A           92 SFKI---SSSDDFKFLGADSVDKQKIDMITAVECAHWF-D---------------------------------FEKFQRS  134 (299)
T ss_dssp             EEEE---CCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C---------------------------------HHHHHHH
T ss_pred             EEEE---cCHHhCCccccccccCCCeeEEeHhhHHHHh-C---------------------------------HHHHHHH
Confidence            3433   7888878888      999999999999996 2                                 1122222


Q ss_pred             hhhhhccCCeEEEEeccc
Q 024331          204 RSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~~g~  221 (269)
                      =.+-|+|||.+++...+.
T Consensus       135 ~~~~LkpgG~l~i~~~~~  152 (299)
T 3g5t_A          135 AYANLRKDGTIAIWGYAD  152 (299)
T ss_dssp             HHHHEEEEEEEEEEEEEE
T ss_pred             HHHhcCCCcEEEEEecCC
Confidence            256678999999966554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.61  E-value=2.7e-07  Score=78.78  Aligned_cols=109  Identities=16%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ++..+|+|+|||+|..+..++        ++         ..+++..|+...-       +......... .+..     
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~--------~~---------~~~~~~~D~s~~~-------~~~a~~~~~~-~~~~-----   85 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLC--------PK---------FKNTWAVDLSQEM-------LSEAENKFRS-QGLK-----   85 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHG--------GG---------SSEEEEECSCHHH-------HHHHHHHHHH-TTCC-----
T ss_pred             CCCCeEEEeCCCCCHHHHHHH--------HC---------CCcEEEEECCHHH-------HHHHHHHHhh-cCCC-----
Confidence            356799999999999988766        32         2578888876540       1111111111 1111     


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -.+   +.+++....+| +++|+++++. ++||+..                              ..|...+|+.=++-
T Consensus        86 ~~~---~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~------------------------------~~~~~~~l~~~~~~  131 (246)
T 1y8c_A           86 PRL---ACQDISNLNIN-RKFDLITCCLDSTNYIID------------------------------SDDLKKYFKAVSNH  131 (246)
T ss_dssp             CEE---ECCCGGGCCCS-CCEEEEEECTTGGGGCCS------------------------------HHHHHHHHHHHHTT
T ss_pred             eEE---EecccccCCcc-CCceEEEEcCccccccCC------------------------------HHHHHHHHHHHHHh
Confidence            123   34788877777 8999999998 9998521                              02445566666788


Q ss_pred             hccCCeEEEEeccc
Q 024331          208 LVAEGRMVLTFLGR  221 (269)
Q Consensus       208 L~pGG~lv~~~~g~  221 (269)
                      |+|||++++.+...
T Consensus       132 L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          132 LKEGGVFIFDINSY  145 (246)
T ss_dssp             EEEEEEEEEEEECH
T ss_pred             cCCCcEEEEEecCH
Confidence            99999999977643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.61  E-value=5.2e-08  Score=81.68  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..+++. .     +-.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~~-~~a~~~~-~-----~~~   87 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLA--------SL---------GHQIEGLEPATR----------LV-ELARQTH-P-----SVT   87 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHH--------HT---------TCCEEEECCCHH----------HH-HHHHHHC-T-----TSE
T ss_pred             CCeEEEecCCCCHHHHHHH--------hc---------CCeEEEEeCCHH----------HH-HHHHHhC-C-----CCe
Confidence            5799999999999887666        32         257888887543          21 2222221 1     123


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      |+.   +++....+|++++|+++++.++|+++.                               .|...+|+.=++-|+|
T Consensus        88 ~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~p  133 (203)
T 3h2b_A           88 FHH---GTITDLSDSPKRWAGLLAWYSLIHMGP-------------------------------GELPDALVALRMAVED  133 (203)
T ss_dssp             EEC---CCGGGGGGSCCCEEEEEEESSSTTCCT-------------------------------TTHHHHHHHHHHTEEE
T ss_pred             EEe---CcccccccCCCCeEEEEehhhHhcCCH-------------------------------HHHHHHHHHHHHHcCC
Confidence            433   788888899999999999999999641                               1222334444677889


Q ss_pred             CCeEEEEecccCC
Q 024331          211 EGRMVLTFLGRKS  223 (269)
Q Consensus       211 GG~lv~~~~g~~~  223 (269)
                      ||+++++.+....
T Consensus       134 gG~l~i~~~~~~~  146 (203)
T 3h2b_A          134 GGGLLMSFFSGPS  146 (203)
T ss_dssp             EEEEEEEEECCSS
T ss_pred             CcEEEEEEccCCc
Confidence            9999999876654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.60  E-value=2.5e-07  Score=84.20  Aligned_cols=113  Identities=17%  Similarity=0.150  Sum_probs=70.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..++        +++       |..+++..|+|.-        +....+.... .+..    .
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~~-~~~~----~  219 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALL--------TAH-------EDLSGTVLDLQGP--------ASAAHRRFLD-TGLS----G  219 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HHHHHHHHHH-TTCT----T
T ss_pred             CCCCEEEEeCCChhHHHHHHH--------HHC-------CCCeEEEecCHHH--------HHHHHHhhhh-cCcC----c
Confidence            346899999999998877666        553       5678888898432        2221111211 1110    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +..+.++|+ ..+|. ++|++++...||..++                               .+..++|+.=++-|
T Consensus       220 ~--v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L  264 (332)
T 3i53_A          220 R--AQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDD-------------------------------LSAVAILRRCAEAA  264 (332)
T ss_dssp             T--EEEEECCTT-SCCCC-SCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHH
T ss_pred             C--eEEecCCCC-CCCCC-CCcEEEEehhhccCCH-------------------------------HHHHHHHHHHHHhc
Confidence            2  223458998 56787 8999999999985321                               12233444445667


Q ss_pred             ccCCeEEEEecccCCC
Q 024331          209 VAEGRMVLTFLGRKSQ  224 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~  224 (269)
                      +|||++++.....++.
T Consensus       265 ~pgG~l~i~e~~~~~~  280 (332)
T 3i53_A          265 GSGGVVLVIEAVAGDE  280 (332)
T ss_dssp             TTTCEEEEEECCCC--
T ss_pred             CCCCEEEEEeecCCCC
Confidence            7999999987765543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.60  E-value=4.2e-07  Score=76.96  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        ++.       +  +|+..|+... .      +....+.... .+.     .-
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~--------~~~-------~--~v~~vD~s~~-~------~~~a~~~~~~-~~~-----~~   87 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLE--------DYG-------F--EVVGVDISED-M------IRKAREYAKS-RES-----NV   87 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHH--------HTT-------C--EEEEEESCHH-H------HHHHHHHHHH-TTC-----CC
T ss_pred             CCCeEEEEeccCCHHHHHHH--------HcC-------C--EEEEEECCHH-H------HHHHHHHHHh-cCC-----Cc
Confidence            36799999999998876665        331       2  7888887543 1      1111111111 111     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .++.   +++....+|++++|+++++.++|+...                               .|...+|+.=++-|+
T Consensus        88 ~~~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~  133 (227)
T 1ve3_A           88 EFIV---GDARKLSFEDKTFDYVIFIDSIVHFEP-------------------------------LELNQVFKEVRRVLK  133 (227)
T ss_dssp             EEEE---CCTTSCCSCTTCEEEEEEESCGGGCCH-------------------------------HHHHHHHHHHHHHEE
T ss_pred             eEEE---CchhcCCCCCCcEEEEEEcCchHhCCH-------------------------------HHHHHHHHHHHHHcC
Confidence            3433   788887789999999999888544110                               233444554466788


Q ss_pred             cCCeEEEEeccc
Q 024331          210 AEGRMVLTFLGR  221 (269)
Q Consensus       210 pGG~lv~~~~g~  221 (269)
                      |||++++..+..
T Consensus       134 ~gG~l~~~~~~~  145 (227)
T 1ve3_A          134 PSGKFIMYFTDL  145 (227)
T ss_dssp             EEEEEEEEEECH
T ss_pred             CCcEEEEEecCh
Confidence            999999987753

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.60  E-value=9.1e-08  Score=82.08  Aligned_cols=105  Identities=17%  Similarity=0.314  Sum_probs=69.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..+.        ++         ..+|+..|+...          +. +..+++... .   +-
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~~~~-~---~~  100 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLS--------RT---------GYKAVGVDISEV----------MI-QKGKERGEG-P---DL  100 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHTTTCB-T---TE
T ss_pred             CCCeEEEEcCCCCHHHHHHH--------Hc---------CCeEEEEECCHH----------HH-HHHHhhccc-C---Cc
Confidence            46799999999999887766        32         257889887543          11 212222111 0   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++....+|++++|++++..++|++.+                  +.               .+|+.=.+-|+
T Consensus       101 ~~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------~~---------------~~l~~~~~~L~  144 (242)
T 3l8d_A          101 SFIK---GDLSSLPFENEQFEAIMAINSLEWTEE------------------PL---------------RALNEIKRVLK  144 (242)
T ss_dssp             EEEE---CBTTBCSSCTTCEEEEEEESCTTSSSC------------------HH---------------HHHHHHHHHEE
T ss_pred             eEEE---cchhcCCCCCCCccEEEEcChHhhccC------------------HH---------------HHHHHHHHHhC
Confidence            3433   788888899999999999999998622                  11               12222245677


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++..+..
T Consensus       145 pgG~l~i~~~~~~  157 (242)
T 3l8d_A          145 SDGYACIAILGPT  157 (242)
T ss_dssp             EEEEEEEEEECTT
T ss_pred             CCeEEEEEEcCCc
Confidence            9999999987664

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.60  E-value=2.2e-07  Score=80.21  Aligned_cols=108  Identities=16%  Similarity=0.111  Sum_probs=72.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++.        ..+|+..|....          + .+..+++...      .
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~--------~~~--------~~~v~~vD~s~~----------~-~~~a~~~~~~------~  139 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLL--------TKL--------YATTDLLEPVKH----------M-LEEAKRELAG------M  139 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTH--------HHH--------CSEEEEEESCHH----------H-HHHHHHHTTT------S
T ss_pred             CCCEEEEECCCcCHHHHHHH--------Hhh--------cCEEEEEeCCHH----------H-HHHHHHHhcc------C
Confidence            46899999999999888776        332        146788886543          1 1222322211      0


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .-+..+.+++....+|++++|+++++.++|+++.                               .|+..+|+.=.+-|+
T Consensus       140 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~Lk  188 (254)
T 1xtp_A          140 PVGKFILASMETATLPPNTYDLIVIQWTAIYLTD-------------------------------ADFVKFFKHCQQALT  188 (254)
T ss_dssp             SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEE
T ss_pred             CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcC
Confidence            1122234788888889999999999999998532                               234455555567788


Q ss_pred             cCCeEEEEeccc
Q 024331          210 AEGRMVLTFLGR  221 (269)
Q Consensus       210 pGG~lv~~~~g~  221 (269)
                      |||+++++....
T Consensus       189 pgG~l~i~~~~~  200 (254)
T 1xtp_A          189 PNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEEEEEEBC
T ss_pred             CCeEEEEEecCC
Confidence            999999998643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.59  E-value=2.4e-07  Score=78.61  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~  127 (269)
                      ++..+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..++... .+....
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~~~~~~~~~~   80 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELA--------SK---------GYSVTGIDINSE----------AI-RLAETAARSPGLNQK   80 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHHHTTCCSCCSS
T ss_pred             CCCCeEEEECCCCCHHHHHHH--------hC---------CCeEEEEECCHH----------HH-HHHHHHHHhcCCccc
Confidence            356799999999999888776        32         268999998654          11 11222211 111000


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      ..-.+..+.+++....+|++++|+++++..+|++..                   +           .++..+|+.=.+-
T Consensus        81 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-------------------~-----------~~~~~~l~~~~~~  130 (235)
T 3sm3_A           81 TGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPD-------------------P-----------KERSRIIKEVFRV  130 (235)
T ss_dssp             SSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCC-------------------H-----------HHHHHHHHHHHHH
T ss_pred             cCcceEEEEecccccCCCCCceeEEEEcchhhcCCC-------------------H-----------HHHHHHHHHHHHH
Confidence            011233345788888899999999999999998532                   1           1122344444567


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||+++++.++..
T Consensus       131 L~pgG~l~~~~~~~~  145 (235)
T 3sm3_A          131 LKPGAYLYLVEFGQN  145 (235)
T ss_dssp             EEEEEEEEEEEEBCC
T ss_pred             cCCCeEEEEEECCcc
Confidence            789999999988764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.58  E-value=4.8e-07  Score=79.76  Aligned_cols=113  Identities=16%  Similarity=0.206  Sum_probs=72.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      ++..+|+|+|||+|..+..+.        +.        +..+|+..|+...          +. +..+++. ..+.   
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~~~~v~gvD~s~~----------~~-~~a~~~~~~~~~---  112 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYE--------RA--------GIGEYYGVDIAEV----------SI-NDARVRARNMKR---  112 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHH--------HH--------TCSEEEEEESCHH----------HH-HHHHHHHHTSCC---
T ss_pred             CCCCeEEEECCCCCHHHHHHH--------HC--------CCCEEEEEECCHH----------HH-HHHHHHHHhcCC---
Confidence            346799999999999887655        32        2348899997654          11 1122111 1111   


Q ss_pred             CceEEeecCCCccCCCC-CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lf-P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                       ..-+..+.+++....+ +++++|++++..++||+-.                  .           ..|...+|+.=++
T Consensus       113 -~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~------------------~-----------~~~~~~~l~~~~~  162 (298)
T 1ri5_A          113 -RFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFS------------------T-----------SESLDIAQRNIAR  162 (298)
T ss_dssp             -SSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGS------------------S-----------HHHHHHHHHHHHH
T ss_pred             -CccEEEEECCccccccCCCCCcCEEEECchhhhhcC------------------C-----------HHHHHHHHHHHHH
Confidence             0112233478877777 6899999999999998411                  0           1344556665577


Q ss_pred             hhccCCeEEEEeccc
Q 024331          207 ELVAEGRMVLTFLGR  221 (269)
Q Consensus       207 EL~pGG~lv~~~~g~  221 (269)
                      -|+|||+++++.+..
T Consensus       163 ~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          163 HLRPGGYFIMTVPSR  177 (298)
T ss_dssp             TEEEEEEEEEEEECH
T ss_pred             hcCCCCEEEEEECCH
Confidence            888999999998653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.56  E-value=2.2e-07  Score=82.11  Aligned_cols=134  Identities=13%  Similarity=0.060  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC-----------
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN-----------  100 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N-----------  100 (269)
                      +..++.+.+.++......+..+|+|+|||+|..++.++        ..        .--+|+..|+..+           
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~--------~~--------~~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA--------CD--------SFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG--------GG--------TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHH--------Hh--------hhcceeeccccHHHHHHHHHHHhc
Confidence            44555555555543223356899999999998876544        21        1126888887754           


Q ss_pred             -----chHHHHHhhHH----------HHHHHHHhcCCCCCCCCceEEeecCCCccC-CCC---CCCceeeEecccccccc
Q 024331          101 -----DFNTIFRSLAS----------FQKILRKQLGSASGAAGQCFFTGVPGSFYG-RLF---PRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       101 -----DFntLF~~l~~----------~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~-~lf---P~~Svd~~~Ss~alHWL  161 (269)
                           |++.....+..          ..+.++.          .+ ...+.++... .++   +.+++|+++|+++|||+
T Consensus       101 ~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~----------~i-~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i  169 (263)
T 2a14_A          101 EPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA----------AV-KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA  169 (263)
T ss_dssp             CTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH----------HE-EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred             CCCcccchHHHHHHHhcCCCCcchhhHHHHHHh----------hh-heEEeccccCCCCCCccccCCCCEeeehHHHHHh
Confidence                 22111111100          0000000          11 0023356655 233   36799999999999996


Q ss_pred             ccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331          162 SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       162 S~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      ..-+                             .|+...|+.=++-|||||+|+++....
T Consensus       170 ~~~~-----------------------------~~~~~~l~~i~r~LKPGG~li~~~~~~  200 (263)
T 2a14_A          170 CCSL-----------------------------DAYRAALCNLASLLKPGGHLVTTVTLR  200 (263)
T ss_dssp             CSSH-----------------------------HHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             cCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            4311                             234444444467888999999997543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.56  E-value=3e-07  Score=77.69  Aligned_cols=107  Identities=11%  Similarity=0.083  Sum_probs=71.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..+.        ++         ..+|+..|+...          +. +..+++... .   +
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~~~~-~---~   97 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLA--------PH---------CKRLTVIDVMPR----------AI-GRACQRTKR-W---S   97 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHG--------GG---------EEEEEEEESCHH----------HH-HHHHHHTTT-C---S
T ss_pred             CCCCcEEEEcCCCCHHHHHHH--------Hc---------CCEEEEEECCHH----------HH-HHHHHhccc-C---C
Confidence            346899999999999887765        32         258889887643          21 222222211 1   1


Q ss_pred             c-eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 Q-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      + .|+.   +++.... |++++|+++++.++||+...                              .++..+|+.=++-
T Consensus        98 ~~~~~~---~d~~~~~-~~~~fD~v~~~~~l~~~~~~------------------------------~~~~~~l~~~~~~  143 (216)
T 3ofk_A           98 HISWAA---TDILQFS-TAELFDLIVVAEVLYYLEDM------------------------------TQMRTAIDNMVKM  143 (216)
T ss_dssp             SEEEEE---CCTTTCC-CSCCEEEEEEESCGGGSSSH------------------------------HHHHHHHHHHHHT
T ss_pred             CeEEEE---cchhhCC-CCCCccEEEEccHHHhCCCH------------------------------HHHHHHHHHHHHH
Confidence            2 2333   7777766 89999999999999996431                              1233445555678


Q ss_pred             hccCCeEEEEeccc
Q 024331          208 LVAEGRMVLTFLGR  221 (269)
Q Consensus       208 L~pGG~lv~~~~g~  221 (269)
                      |+|||.++++....
T Consensus       144 L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          144 LAPGGHLVFGSARD  157 (216)
T ss_dssp             EEEEEEEEEEEECH
T ss_pred             cCCCCEEEEEecCC
Confidence            88999999987644

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.56  E-value=4.2e-07  Score=81.36  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=74.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +++       + .+|+..|+...       .+....+... ..+..    .+
T Consensus        72 ~~~~vLDiGcG~G~~~~~la--------~~~-------~-~~v~gvD~s~~-------~~~~a~~~~~-~~~~~----~~  123 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAV--------AEY-------D-VNVIGLTLSEN-------QYAHDKAMFD-EVDSP----RR  123 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH-------C-CEEEEEECCHH-------HHHHHHHHHH-HSCCS----SC
T ss_pred             CcCEEEEeeccCcHHHHHHH--------HhC-------C-CEEEEEECCHH-------HHHHHHHHHH-hcCCC----Cc
Confidence            45799999999999988877        543       3 68999998654       0111111111 11211    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +  ..+.+++...   ++++|+++|..++|++.+... ..                       ..+++..+|+.=.+-|+
T Consensus       124 v--~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~-~~-----------------------~~~~~~~~l~~~~~~Lk  174 (302)
T 3hem_A          124 K--EVRIQGWEEF---DEPVDRIVSLGAFEHFADGAG-DA-----------------------GFERYDTFFKKFYNLTP  174 (302)
T ss_dssp             E--EEEECCGGGC---CCCCSEEEEESCGGGTTCCSS-CC-----------------------CTTHHHHHHHHHHHSSC
T ss_pred             e--EEEECCHHHc---CCCccEEEEcchHHhcCcccc-cc-----------------------chhHHHHHHHHHHHhcC
Confidence            2  1223666553   899999999999999765311 00                       01344556666677888


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++++..+....
T Consensus       175 pgG~l~i~~~~~~~  188 (302)
T 3hem_A          175 DDGRMLLHTITIPD  188 (302)
T ss_dssp             TTCEEEEEEEECCC
T ss_pred             CCcEEEEEEEeccC
Confidence            99999999887653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.56  E-value=1.7e-07  Score=83.21  Aligned_cols=81  Identities=6%  Similarity=0.010  Sum_probs=54.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC-------
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS-------  122 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~-------  122 (269)
                      ...+|+|+|||+|.++..++        ++         ..+|+..|+...          +. +..+++.+.       
T Consensus        68 ~~~~vLD~GCG~G~~~~~La--------~~---------G~~V~gvD~S~~----------~i-~~a~~~~~~~~~~~~~  119 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFA--------DR---------GHTVVGVEISEI----------GI-REFFAEQNLSYTEEPL  119 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHH--------HT---------TCEEEEECSCHH----------HH-HHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEeCCCCcHHHHHHH--------HC---------CCeEEEEECCHH----------HH-HHHHHhcccccccccc
Confidence            45799999999999998777        43         268999998876          32 223222210       


Q ss_pred             ----CC-----CCCCceEEeecCCCccCCCCCC-CceeeEecccccccc
Q 024331          123 ----AS-----GAAGQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWL  161 (269)
Q Consensus       123 ----~~-----~~~~~~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWL  161 (269)
                          ++     ....--|+.   +++....+++ +++|++++..+||++
T Consensus       120 ~~~~~~~~~~~~~~~i~~~~---~D~~~l~~~~~~~FD~V~~~~~l~~l  165 (252)
T 2gb4_A          120 AEIAGAKVFKSSSGSISLYC---CSIFDLPRANIGKFDRIWDRGALVAI  165 (252)
T ss_dssp             TTSTTCEEEEETTSSEEEEE---SCTTTGGGGCCCCEEEEEESSSTTTS
T ss_pred             cccccccccccCCCceEEEE---CccccCCcccCCCEEEEEEhhhhhhC
Confidence                00     000112333   8898887775 899999999999997

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.56  E-value=6.7e-07  Score=83.00  Aligned_cols=112  Identities=16%  Similarity=0.221  Sum_probs=73.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..+..++        +++       |..+++..|+|.-        +....+.... .+..    .
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~~-~~l~----~  252 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVL--------DAF-------PGLRGTLLERPPV--------AEEARELLTG-RGLA----D  252 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HHHHHHHHHH-TTCT----T
T ss_pred             ccCcEEEEeCCCccHHHHHHH--------HHC-------CCCeEEEEcCHHH--------HHHHHHhhhh-cCcC----C
Confidence            356899999999999887776        554       6789999998432        2221111211 1110    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +..+.++|+ ..+|. ++|++++...||+.++                               .+..++|+.=++-|
T Consensus       253 ~--v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L  297 (369)
T 3gwz_A          253 R--CEILPGDFF-ETIPD-GADVYLIKHVLHDWDD-------------------------------DDVVRILRRIATAM  297 (369)
T ss_dssp             T--EEEEECCTT-TCCCS-SCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHTTC
T ss_pred             c--eEEeccCCC-CCCCC-CceEEEhhhhhccCCH-------------------------------HHHHHHHHHHHHHc
Confidence            2  223448998 67787 8999999999997422                               12223444446778


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++.....++
T Consensus       298 ~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          298 KPDSRLLVIDNLIDE  312 (369)
T ss_dssp             CTTCEEEEEEEBCCS
T ss_pred             CCCCEEEEEEeccCC
Confidence            899999998876654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.55  E-value=9.5e-08  Score=80.69  Aligned_cols=103  Identities=17%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..+++.+       -
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~~~-------~   87 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAML--------AA---------GFDVDATDGSPE----------LA-AEASRRLG-------R   87 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHHHHT-------S
T ss_pred             CCCcEEEECCCCCHHHHHHH--------Hc---------CCeEEEECCCHH----------HH-HHHHHhcC-------C
Confidence            46799999999999887776        32         268889987543          11 11222211       1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .++.   +++.... +++++|+++++.++|++..                               .|+..+|+.=++-|+
T Consensus        88 ~~~~---~d~~~~~-~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~Lk  132 (211)
T 3e23_A           88 PVRT---MLFHQLD-AIDAYDAVWAHACLLHVPR-------------------------------DELADVLKLIWRALK  132 (211)
T ss_dssp             CCEE---CCGGGCC-CCSCEEEEEECSCGGGSCH-------------------------------HHHHHHHHHHHHHEE
T ss_pred             ceEE---eeeccCC-CCCcEEEEEecCchhhcCH-------------------------------HHHHHHHHHHHHhcC
Confidence            2323   6777766 8999999999999998531                               234445555566788


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||++++++....
T Consensus       133 pgG~l~~~~~~~~  145 (211)
T 3e23_A          133 PGGLFYASYKSGE  145 (211)
T ss_dssp             EEEEEEEEEECCS
T ss_pred             CCcEEEEEEcCCC
Confidence            9999999986554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.55  E-value=2.5e-07  Score=86.37  Aligned_cols=115  Identities=19%  Similarity=0.235  Sum_probs=72.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh---c-C-CCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---L-G-SAS  124 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~---~-~-~~~  124 (269)
                      +..+|+|+|||+|..++.++        +.+      .|..+|+..|+... .      +....+.+...   . | ...
T Consensus        83 ~~~~VLDlGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~-~------l~~a~~~~~~~~~~~~g~~~~  141 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLAS--------KLV------GEHGKVIGVDMLDN-Q------LEVARKYVEYHAEKFFGSPSR  141 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH------TTTCEEEEEECCHH-H------HHHHHHTHHHHHHHHHSSTTC
T ss_pred             CCCEEEEecCccCHHHHHHH--------HHh------CCCCEEEEEECCHH-H------HHHHHHHHHHhhhhcccccCC
Confidence            46799999999999988777        443      14579999998654 1      11111111100   0 2 100


Q ss_pred             CCCCceEEeecCCCccCC------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHH
Q 024331          125 GAAGQCFFTGVPGSFYGR------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFS  198 (269)
Q Consensus       125 ~~~~~~f~~~vpgSFy~~------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~  198 (269)
                        .+-.|+.   +++...      .+|++++|+++|+.++||+.+.                                 .
T Consensus       142 --~~v~~~~---~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~---------------------------------~  183 (383)
T 4fsd_A          142 --SNVRFLK---GFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK---------------------------------L  183 (383)
T ss_dssp             --CCEEEEE---SCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCH---------------------------------H
T ss_pred             --CceEEEE---ccHHHhhhcccCCCCCCCEEEEEEccchhcCCCH---------------------------------H
Confidence              0123433   677765      8999999999999999996331                                 1


Q ss_pred             HHHhhhhhhhccCCeEEEEecccCC
Q 024331          199 LFLKCRSEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       199 ~FL~~Ra~EL~pGG~lv~~~~g~~~  223 (269)
                      .+|+.=.+-|||||+|+++.+....
T Consensus       184 ~~l~~~~r~LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          184 ALFKEIHRVLRDGGELYFSDVYADR  208 (383)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHcCCCCEEEEEEecccc
Confidence            2233335677899999999876653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.54  E-value=3.8e-07  Score=78.92  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..++        +..         .+|+..|+... .      +......... .+..    .
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~--------~~~---------~~v~~vD~s~~-~------~~~a~~~~~~-~~~~----~   70 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFS--------PYV---------QECIGVDATKE-M------VEVASSFAQE-KGVE----N   70 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHG--------GGS---------SEEEEEESCHH-H------HHHHHHHHHH-HTCC----S
T ss_pred             CCCCEEEEEccCcCHHHHHHH--------HhC---------CEEEEEECCHH-H------HHHHHHHHHH-cCCC----C
Confidence            346899999999999887665        321         37888887543 1      1111111111 1210    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|+   .+++....+|++++|++++..++||+.+.                                 ..+|+.=.+-|
T Consensus        71 v~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L  114 (239)
T 1xxl_A           71 VRFQ---QGTAESLPFPDDSFDIITCRYAAHHFSDV---------------------------------RKAVREVARVL  114 (239)
T ss_dssp             EEEE---ECBTTBCCSCTTCEEEEEEESCGGGCSCH---------------------------------HHHHHHHHHHE
T ss_pred             eEEE---ecccccCCCCCCcEEEEEECCchhhccCH---------------------------------HHHHHHHHHHc
Confidence            1233   37888888999999999999999986321                                 12222225677


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||+++++.....
T Consensus       115 kpgG~l~~~~~~~~  128 (239)
T 1xxl_A          115 KQDGRFLLVDHYAP  128 (239)
T ss_dssp             EEEEEEEEEEECBC
T ss_pred             CCCcEEEEEEcCCC
Confidence            89999999876553

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.54  E-value=3.3e-07  Score=77.54  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..++....     +-
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~~~~-----~~   91 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLL--------LA---------GRTVYGIEPSRE----------MR-MIAKEKLPK-----EF   91 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHH--------HT---------TCEEEEECSCHH----------HH-HHHHHHSCT-----TC
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------hC---------CCeEEEEeCCHH----------HH-HHHHHhCCC-----ce
Confidence            35799999999999887766        32         268899997654          21 222222111     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      -|+   .+++....++ +++|++++..++||+..                   +            +...+|+.=.+-|+
T Consensus        92 ~~~---~~d~~~~~~~-~~fD~v~~~~~l~~~~~-------------------~------------~~~~~l~~~~~~Lk  136 (220)
T 3hnr_A           92 SIT---EGDFLSFEVP-TSIDTIVSTYAFHHLTD-------------------D------------EKNVAIAKYSQLLN  136 (220)
T ss_dssp             CEE---SCCSSSCCCC-SCCSEEEEESCGGGSCH-------------------H------------HHHHHHHHHHHHSC
T ss_pred             EEE---eCChhhcCCC-CCeEEEEECcchhcCCh-------------------H------------HHHHHHHHHHHhcC
Confidence            333   3788888888 99999999999999633                   0            11223444456778


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||.++++.+...
T Consensus       137 pgG~l~i~~~~~~  149 (220)
T 3hnr_A          137 KGGKIVFADTIFA  149 (220)
T ss_dssp             TTCEEEEEEECBS
T ss_pred             CCCEEEEEecccc
Confidence            9999999976554

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.53  E-value=2e-07  Score=83.76  Aligned_cols=60  Identities=10%  Similarity=0.073  Sum_probs=42.2

Q ss_pred             CCCccCCC-----CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          136 PGSFYGRL-----FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       136 pgSFy~~l-----fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      .+++....     ++++++|+|+|...+||+.                           ......++.++|+.=.+-|+|
T Consensus       160 ~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ih---------------------------l~~~~~~~~~~l~~~~~~Lkp  212 (292)
T 3g07_A          160 TGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVH---------------------------LNWGDEGLKRMFRRIYRHLRP  212 (292)
T ss_dssp             ECCCCCSSHHHHTTCCCCEEEEEEESCHHHHH---------------------------HHHHHHHHHHHHHHHHHHEEE
T ss_pred             ecccccCccccccccCCCcCEEEEChHHHHhh---------------------------hcCCHHHHHHHHHHHHHHhCC
Confidence            36666544     6789999999999999941                           011224556666666778889


Q ss_pred             CCeEEEEecccC
Q 024331          211 EGRMVLTFLGRK  222 (269)
Q Consensus       211 GG~lv~~~~g~~  222 (269)
                      ||+|++....+.
T Consensus       213 GG~lil~~~~~~  224 (292)
T 3g07_A          213 GGILVLEPQPWS  224 (292)
T ss_dssp             EEEEEEECCCHH
T ss_pred             CcEEEEecCCch
Confidence            999999866554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.53  E-value=9.3e-08  Score=84.04  Aligned_cols=144  Identities=15%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..+..+.        +         |..+|+..|+...          +.    . .....    .
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~--------~---------~~~~v~gvD~s~~----------~~----~-~a~~~----~   76 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALA--------N---------QGLFVYAVEPSIV----------MR----Q-QAVVH----P   76 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHH--------T---------TTCEEEEECSCHH----------HH----H-SSCCC----T
T ss_pred             CCCCEEEEEcCcccHHHHHHH--------h---------CCCEEEEEeCCHH----------HH----H-HHHhc----c
Confidence            346899999999999887666        2         3579999997653          21    1 01010    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                        -+..+.+++....+|++++|++++..++||+.+                                 +..+|+.=.+-|
T Consensus        77 --~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~L  121 (261)
T 3ege_A           77 --QVEWFTGYAENLALPDKSVDGVISILAIHHFSH---------------------------------LEKSFQEMQRII  121 (261)
T ss_dssp             --TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS---------------------------------HHHHHHHHHHHB
T ss_pred             --CCEEEECchhhCCCCCCCEeEEEEcchHhhccC---------------------------------HHHHHHHHHHHh
Confidence              122234788888899999999999999998622                                 122333336789


Q ss_pred             ccCCeEEEEecccCCCCCC-Chhh----hH----HHHHHHHHHHHHHHccCcccccccceecccccc
Q 024331          209 VAEGRMVLTFLGRKSQDPS-SKEC----CY----IWELLATALNNMVSEVTKSFLLLIVFNQLNYKL  266 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~-~~~~----~~----~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~~~  266 (269)
                      + ||.+++..+........ ....    ..    .+......- -|.+.|+-. .++..+.+|...|
T Consensus       122 k-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~-v~~~~~~~p~~~~  185 (261)
T 3ege_A          122 R-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRR-VEAIPFLLPHDLS  185 (261)
T ss_dssp             C-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSE-EEEEECCEETTCS
T ss_pred             C-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCc-eeEEEecCCCcCc
Confidence            9 99988888765432111 1000    00    011223333 677778743 3446777777666

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.53  E-value=1e-07  Score=81.33  Aligned_cols=102  Identities=14%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +.+|+|+|||+|..+..+.        ++.         .+|+..|+...          +. +..+++...+     --
T Consensus        43 ~~~vLDiGcG~G~~~~~l~--------~~~---------~~v~gvD~s~~----------~~-~~a~~~~~~~-----v~   89 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQ--------EHF---------NDITCVEASEE----------AI-SHAQGRLKDG-----IT   89 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHT--------TTC---------SCEEEEESCHH----------HH-HHHHHHSCSC-----EE
T ss_pred             CCcEEEECCCCCHHHHHHH--------HhC---------CcEEEEeCCHH----------HH-HHHHHhhhCC-----eE
Confidence            4689999999999877665        321         26888887643          21 2233222111     12


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh-hhhc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS-EELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra-~EL~  209 (269)
                      |+.   +++... +|++++|+++++.+||++.+                  +               ..+|+.=+ +-|+
T Consensus        90 ~~~---~d~~~~-~~~~~fD~v~~~~~l~~~~~------------------~---------------~~~l~~~~~~~Lk  132 (250)
T 2p7i_A           90 YIH---SRFEDA-QLPRRYDNIVLTHVLEHIDD------------------P---------------VALLKRINDDWLA  132 (250)
T ss_dssp             EEE---SCGGGC-CCSSCEEEEEEESCGGGCSS------------------H---------------HHHHHHHHHTTEE
T ss_pred             EEE---ccHHHc-CcCCcccEEEEhhHHHhhcC------------------H---------------HHHHHHHHHHhcC
Confidence            333   677665 78999999999999999632                  1               12222225 7788


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++.+...
T Consensus       133 pgG~l~i~~~~~~  145 (250)
T 2p7i_A          133 EGGRLFLVCPNAN  145 (250)
T ss_dssp             EEEEEEEEEECTT
T ss_pred             CCCEEEEEcCChH
Confidence            9999999987553

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.53  E-value=1.5e-07  Score=81.36  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=70.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..++        ++.        ..+|+..|+...          +. +..+++....    +.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~~vD~s~~----------~~-~~a~~~~~~~----~~  127 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLL--------LPL--------FREVDMVDITED----------FL-VQAKTYLGEE----GK  127 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTT--------TTT--------CSEEEEEESCHH----------HH-HHHHHHTGGG----GG
T ss_pred             CCCEEEEECCCCCHHHHHHH--------Hhc--------CCEEEEEeCCHH----------HH-HHHHHHhhhc----CC
Confidence            46899999999999887666        321        247888887654          11 1122211100    00


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      ..+..+.+++....++++++|++++..++|++.+                               .++..+|+.=.+-|+
T Consensus       128 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~Lk  176 (241)
T 2ex4_A          128 RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTD-------------------------------QHLAEFLRRCKGSLR  176 (241)
T ss_dssp             GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEE
T ss_pred             ceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcC
Confidence            1122234778888889999999999999998532                               122334444456677


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++.....
T Consensus       177 pgG~l~i~~~~~~  189 (241)
T 2ex4_A          177 PNGIIVIKDNMAQ  189 (241)
T ss_dssp             EEEEEEEEEEEBS
T ss_pred             CCeEEEEEEccCC
Confidence            9999999876554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.53  E-value=1.4e-07  Score=87.37  Aligned_cols=111  Identities=18%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      .+.+|+|+|||+|..+..++        +++       |..+++..|+|.-        +..    .+++.. .+.    
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~----a~~~~~~~~~----  227 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCV--------QYN-------KEVEVTIVDLPQQ--------LEM----MRKQTAGLSG----  227 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHH--------HHS-------TTCEEEEEECHHH--------HHH----HHHHHTTCTT----
T ss_pred             CCCEEEEeCCCcCHHHHHHH--------HhC-------CCCEEEEEeCHHH--------HHH----HHHHHHhcCc----
Confidence            45799999999999988777        654       6789999998532        221    222211 111    


Q ss_pred             ceEEeecCCCccCC--CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 QCFFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~~f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      .-.+..+.++|+..  ++| +++|++++...||.++.                               .+...+|+.=++
T Consensus       228 ~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~  275 (363)
T 3dp7_A          228 SERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSE-------------------------------EEVISILTRVAQ  275 (363)
T ss_dssp             GGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCH-------------------------------HHHHHHHHHHHH
T ss_pred             ccceEEEEccccccCCCCC-CCcCEEEEechhhhCCH-------------------------------HHHHHHHHHHHH
Confidence            11233355999885  578 89999999999984221                               233344444456


Q ss_pred             hhccCCeEEEEecccCC
Q 024331          207 ELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~  223 (269)
                      -|+|||++++.....++
T Consensus       276 ~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          276 SIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             HCCTTCEEEEEECCTTS
T ss_pred             hcCCCcEEEEEeeccCC
Confidence            78899999998766654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.53  E-value=1.7e-06  Score=78.08  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..+..++        +++       |..+++..|++ . .      +....+...+ .+..    .
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~-~-~------~~~a~~~~~~-~~~~----~  215 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVA--------QHN-------PNAEIFGVDWA-S-V------LEVAKENARI-QGVA----S  215 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHH--------HHC-------TTCEEEEEECH-H-H------HHHHHHHHHH-HTCG----G
T ss_pred             CCCCEEEEECCCcCHHHHHHH--------HHC-------CCCeEEEEecH-H-H------HHHHHHHHHh-cCCC----c
Confidence            456899999999998877666        543       56899999987 3 2      2111111111 1110    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +..+.+++....+|++ +|++++...+|..+.                               .+...+|+.=++-|
T Consensus       216 ~--v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L  261 (335)
T 2r3s_A          216 R--YHTIAGSAFEVDYGND-YDLVLLPNFLHHFDV-------------------------------ATCEQLLRKIKTAL  261 (335)
T ss_dssp             G--EEEEESCTTTSCCCSC-EEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             c--eEEEecccccCCCCCC-CcEEEEcchhccCCH-------------------------------HHHHHHHHHHHHhC
Confidence            1  2224488888777776 999999999986421                               12333444435667


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++..+...+
T Consensus       262 ~pgG~l~i~e~~~~~  276 (335)
T 2r3s_A          262 AVEGKVIVFDFIPNS  276 (335)
T ss_dssp             EEEEEEEEEECCCCT
T ss_pred             CCCcEEEEEeecCCC
Confidence            899999998876654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.52  E-value=1.8e-07  Score=85.20  Aligned_cols=116  Identities=9%  Similarity=0.135  Sum_probs=68.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh---cCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGSASG  125 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~---~~~~~~  125 (269)
                      +...+|+|+|||+|..+..++        +.        ...+|+..|+...          ++.. ++++   .+....
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~--------~~--------~~~~v~GiD~S~~----------~l~~-A~~~~~~~~~~~~   99 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYF--------YG--------EIALLVATDPDAD----------AIAR-GNERYNKLNSGIK   99 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHH--------HT--------TCSEEEEEESCHH----------HHHH-HHHHHHHHCC---
T ss_pred             CCCCeEEEEecCCcHhHHHHH--------hc--------CCCeEEEEECCHH----------HHHH-HHHHHHhcccccc
Confidence            346799999999998766443        21        2368999998876          3321 2211   111000


Q ss_pred             CC-Cc-eEEe-ecCCCccC----CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHH
Q 024331          126 AA-GQ-CFFT-GVPGSFYG----RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFS  198 (269)
Q Consensus       126 ~~-~~-~f~~-~vpgSFy~----~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~  198 (269)
                      .. -. -|.. -+-++-+.    ..+|++++|++.|.+++||+-..+.                              ..
T Consensus       100 ~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~------------------------------~~  149 (302)
T 2vdw_A          100 TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRH------------------------------YA  149 (302)
T ss_dssp             -CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTT------------------------------HH
T ss_pred             ccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHH------------------------------HH
Confidence            00 00 1333 23333321    2478899999999999999633211                              12


Q ss_pred             HHHhhhhhhhccCCeEEEEeccc
Q 024331          199 LFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       199 ~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      .+|+.=++-|||||+++++++.+
T Consensus       150 ~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          150 TVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECH
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCH
Confidence            33333367788999999998743

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.52  E-value=8.2e-08  Score=85.15  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh---cCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGSASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~---~~~~~~~  126 (269)
                      ++.+|+|+|||+|..++.++        ++         ..+|+..|+...          +. +..+++   .+.....
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~l-~~a~~~~~~~~~~~~~  108 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLV--------EE---------GFSVTSVDASDK----------ML-KYALKERWNRRKEPAF  108 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHHHHHHTTTSHHH
T ss_pred             CCCEEEEecCCCCHHHHHHH--------HC---------CCeEEEEECCHH----------HH-HHHHHhhhhccccccc
Confidence            35799999999999887776        32         248999998764          11 111111   0100000


Q ss_pred             CCceEEeecCCCccCCC---CCCCceeeEecc-ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 024331          127 AGQCFFTGVPGSFYGRL---FPRNSVHLFHSS-YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLK  202 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~l---fP~~Svd~~~Ss-~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~  202 (269)
                      ..-.+..   +++....   ++++++|++++. .++|++......                          ..++..+|+
T Consensus       109 ~~~~~~~---~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~--------------------------~~~~~~~l~  159 (293)
T 3thr_A          109 DKWVIEE---ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD--------------------------QSEHRLALK  159 (293)
T ss_dssp             HTCEEEE---CCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSS--------------------------SHHHHHHHH
T ss_pred             ceeeEee---cChhhCccccccCCCeEEEEEcChHHhhcCccccC--------------------------HHHHHHHHH
Confidence            0012333   6666655   899999999998 899987653321                          134556666


Q ss_pred             hhhhhhccCCeEEEEecc
Q 024331          203 CRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       203 ~Ra~EL~pGG~lv~~~~g  220 (269)
                      .=++-|+|||+++++...
T Consensus       160 ~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          160 NIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             HHHHTEEEEEEEEEEEEC
T ss_pred             HHHHHcCCCeEEEEEeCC
Confidence            667889999999998753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.51  E-value=2.5e-07  Score=79.56  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +.+|+|+|||+|..+..++        +         +..+|+..|+...          +. +..+++.....   ..-
T Consensus        67 ~~~vLDiGcG~G~~~~~l~--------~---------~~~~v~gvD~s~~----------~~-~~a~~~~~~~~---~~~  115 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMA--------S---------PERFVVGLDISES----------AL-AKANETYGSSP---KAE  115 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHC--------B---------TTEEEEEECSCHH----------HH-HHHHHHHTTSG---GGG
T ss_pred             CCCEEEeCCCCCHHHHHHH--------h---------CCCeEEEEECCHH----------HH-HHHHHHhhccC---CCc
Confidence            4699999999999887664        2         3478999998654          11 11222211100   011


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      .+..+.+++.... |+.++|+++++.++||++.                               .|...+|+.=++-|+|
T Consensus       116 ~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~Lkp  163 (235)
T 3lcc_A          116 YFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEP-------------------------------EMRPAWAKSMYELLKP  163 (235)
T ss_dssp             GEEEECCCTTTCC-CSSCEEEEEEESSTTTSCG-------------------------------GGHHHHHHHHHHHEEE
T ss_pred             ceEEEECchhcCC-CCCCeeEEEEChhhhcCCH-------------------------------HHHHHHHHHHHHHCCC
Confidence            1233447777744 7779999999999999631                               0112233333556779


Q ss_pred             CCeEEEEecccC
Q 024331          211 EGRMVLTFLGRK  222 (269)
Q Consensus       211 GG~lv~~~~g~~  222 (269)
                      ||++++......
T Consensus       164 gG~l~~~~~~~~  175 (235)
T 3lcc_A          164 DGELITLMYPIT  175 (235)
T ss_dssp             EEEEEEEECCCS
T ss_pred             CcEEEEEEeccc
Confidence            999999877654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.51  E-value=5.5e-07  Score=82.31  Aligned_cols=112  Identities=12%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..++        +++       |..+++..|+|.-        +....+...+ .+.      .-
T Consensus       180 ~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~~-~~~------~~  229 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVL--------RRH-------PQLTGQIWDLPTT--------RDAARKTIHA-HDL------GG  229 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHH--------HHC-------TTCEEEEEECGGG--------HHHHHHHHHH-TTC------GG
T ss_pred             CCEEEEeCCCcCHHHHHHH--------HhC-------CCCeEEEEECHHH--------HHHHHHHHHh-cCC------CC
Confidence            6899999999999888777        554       6689999999642        2221111111 111      11


Q ss_pred             EEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          131 FFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .+..+.++|+... ++++++|+++++..+|+++.                               .+...+|+.=++-|+
T Consensus       230 ~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L~  278 (352)
T 3mcz_A          230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDA-------------------------------REAREVIGHAAGLVK  278 (352)
T ss_dssp             GEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTEE
T ss_pred             ceEEEeCCcccCcccCCCCccEEEEecccccCCH-------------------------------HHHHHHHHHHHHHcC
Confidence            2333558888755 35567999999999997422                               233445555567788


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++++.....++
T Consensus       279 pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          279 PGGALLILTMTMND  292 (352)
T ss_dssp             EEEEEEEEEECCCT
T ss_pred             CCCEEEEEEeccCC
Confidence            99999998876654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.49  E-value=8.5e-08  Score=85.40  Aligned_cols=47  Identities=17%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEec
Q 024331          144 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL  219 (269)
Q Consensus       144 fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~  219 (269)
                      +|++++|+++|+.+|||++.-                             ..|+..+|+.=++-|||||+|+++..
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPD-----------------------------LASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSS-----------------------------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCCCCCEEEehhhhhhhcCC-----------------------------HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            567889999999999996431                             12444455555788889999999753

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.48  E-value=1.4e-06  Score=78.96  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=69.2

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceE
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF  131 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f  131 (269)
                      .+|+|+|||+|..+..++        +++       |..+++..|+|.-        +....+.+.+. +..    .+  
T Consensus       169 ~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~~~-~~~----~~--  218 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAIL--------QAE-------PSARGVMLDREGS--------LGVARDNLSSL-LAG----ER--  218 (334)
T ss_dssp             CEEEEETCTTCHHHHHHH--------HHC-------TTCEEEEEECTTC--------THHHHHHTHHH-HHT----TS--
T ss_pred             CEEEEeCCCchHHHHHHH--------HHC-------CCCEEEEeCcHHH--------HHHHHHHHhhc-CCC----Cc--
Confidence            899999999998877766        543       5689999999443        22221111111 100    11  


Q ss_pred             EeecCCCccCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       132 ~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      +..+.++|+. .+| +++|++++...+| |    |                 +           .+...+|+.=++-|+|
T Consensus       219 v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~----~-----------------~-----------~~~~~~l~~~~~~L~p  264 (334)
T 2ip2_A          219 VSLVGGDMLQ-EVP-SNGDIYLLSRIIGDL----D-----------------E-----------AASLRLLGNCREAMAG  264 (334)
T ss_dssp             EEEEESCTTT-CCC-SSCSEEEEESCGGGC----C-----------------H-----------HHHHHHHHHHHHHSCT
T ss_pred             EEEecCCCCC-CCC-CCCCEEEEchhccCC----C-----------------H-----------HHHHHHHHHHHHhcCC
Confidence            2234488888 577 6899999999998 6    1                 1           1123334433566779


Q ss_pred             CCeEEEEecccCC
Q 024331          211 EGRMVLTFLGRKS  223 (269)
Q Consensus       211 GG~lv~~~~g~~~  223 (269)
                      ||++++.....++
T Consensus       265 gG~l~i~e~~~~~  277 (334)
T 2ip2_A          265 DGRVVVIERTISA  277 (334)
T ss_dssp             TCEEEEEECCBCS
T ss_pred             CCEEEEEEeccCC
Confidence            9999999776654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.47  E-value=3.9e-07  Score=76.71  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcc-eEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEF-QVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~-qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..+                    .. +++..|+...          +. +..+++. .     .
T Consensus        36 ~~~~vLdiG~G~G~~~~~l--------------------~~~~v~~vD~s~~----------~~-~~a~~~~-~-----~   78 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL--------------------PYPQKVGVEPSEA----------ML-AVGRRRA-P-----E   78 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC--------------------CCSEEEEECCCHH----------HH-HHHHHHC-T-----T
T ss_pred             CCCeEEEECCCCCHhHHhC--------------------CCCeEEEEeCCHH----------HH-HHHHHhC-C-----C
Confidence            5679999999999865533                    14 7888887553          21 1222221 1     1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.++.   +++....+|++++|+++++.++||+.+                  +               ..+|+.=.+-|
T Consensus        79 ~~~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------~---------------~~~l~~~~~~L  122 (211)
T 2gs9_A           79 ATWVR---AWGEALPFPGESFDVVLLFTTLEFVED------------------V---------------ERVLLEARRVL  122 (211)
T ss_dssp             SEEEC---CCTTSCCSCSSCEEEEEEESCTTTCSC------------------H---------------HHHHHHHHHHE
T ss_pred             cEEEE---cccccCCCCCCcEEEEEEcChhhhcCC------------------H---------------HHHHHHHHHHc
Confidence            23333   677777899999999999999999632                  1               12222225667


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||+++++.+.+.
T Consensus       123 ~pgG~l~i~~~~~~  136 (211)
T 2gs9_A          123 RPGGALVVGVLEAL  136 (211)
T ss_dssp             EEEEEEEEEEECTT
T ss_pred             CCCCEEEEEecCCc
Confidence            79999999987654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.47  E-value=4.2e-07  Score=80.49  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++         ..+|+..|....       .+......... .+.       
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~--------~~---------g~~v~~vD~s~~-------~~~~a~~~~~~-~~~-------  167 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLS--------LL---------GYDVTSWDHNEN-------SIAFLNETKEK-ENL-------  167 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHH--------HT---------TCEEEEEESCHH-------HHHHHHHHHHH-TTC-------
T ss_pred             CCCcEEEECCCCCHHHHHHH--------HC---------CCeEEEEECCHH-------HHHHHHHHHHH-cCC-------
Confidence            46799999999999988776        32         268899997654       01111111111 111       


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                       -+..+.+++....+ ++++|+++++.++||++.                               .++..+|+.=.+-|+
T Consensus       168 -~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~Lk  214 (286)
T 3m70_A          168 -NISTALYDINAANI-QENYDFIVSTVVFMFLNR-------------------------------ERVPSIIKNMKEHTN  214 (286)
T ss_dssp             -CEEEEECCGGGCCC-CSCEEEEEECSSGGGSCG-------------------------------GGHHHHHHHHHHTEE
T ss_pred             -ceEEEEeccccccc-cCCccEEEEccchhhCCH-------------------------------HHHHHHHHHHHHhcC
Confidence             22223377777666 889999999999999732                               122234444466788


Q ss_pred             cCCeEEEEeccc
Q 024331          210 AEGRMVLTFLGR  221 (269)
Q Consensus       210 pGG~lv~~~~g~  221 (269)
                      |||++++.....
T Consensus       215 pgG~l~i~~~~~  226 (286)
T 3m70_A          215 VGGYNLIVAAMS  226 (286)
T ss_dssp             EEEEEEEEEEBC
T ss_pred             CCcEEEEEEecC
Confidence            999988766544

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.47  E-value=2.3e-06  Score=73.89  Aligned_cols=122  Identities=18%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhH
Q 024331           31 IAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLA  110 (269)
Q Consensus        31 ~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~  110 (269)
                      ....++++.+....   .+++.+|+|+|||+|..++.++        ++         ..+|+..|+... .      +.
T Consensus        25 ~~~~~~~~~~~~~~---~~~~~~vLDlGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~-~------l~   77 (252)
T 1wzn_A           25 AEIDFVEEIFKEDA---KREVRRVLDLACGTGIPTLELA--------ER---------GYEVVGLDLHEE-M------LR   77 (252)
T ss_dssp             HHHHHHHHHHHHTC---SSCCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHH-H------HH
T ss_pred             HHHHHHHHHHHHhc---ccCCCEEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECCHH-H------HH
Confidence            33445555444332   2345799999999999888766        32         258999997654 0      11


Q ss_pred             HHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHH
Q 024331          111 SFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAY  189 (269)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay  189 (269)
                      ...+.... .+.     .-.++.   +++....++ +++|++++.. .+|+++                           
T Consensus        78 ~a~~~~~~-~~~-----~v~~~~---~d~~~~~~~-~~fD~v~~~~~~~~~~~---------------------------  120 (252)
T 1wzn_A           78 VARRKAKE-RNL-----KIEFLQ---GDVLEIAFK-NEFDAVTMFFSTIMYFD---------------------------  120 (252)
T ss_dssp             HHHHHHHH-TTC-----CCEEEE---SCGGGCCCC-SCEEEEEECSSGGGGSC---------------------------
T ss_pred             HHHHHHHh-cCC-----ceEEEE---CChhhcccC-CCccEEEEcCCchhcCC---------------------------
Confidence            11111111 111     113333   777776655 6899999863 344421                           


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCeEEEEecc
Q 024331          190 YEQFQRDFSLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       190 ~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                          ..|...+|+.=++-|+|||++++.+..
T Consensus       121 ----~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          121 ----EEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             ----HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence                023445555556778899999987754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.45  E-value=6.2e-07  Score=75.00  Aligned_cols=122  Identities=15%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..++.++        +..       +. +|+..|+...          +. +..+++... .  ..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~--------~~~-------~~-~v~~~D~s~~----------~~-~~a~~~~~~-~--~~   90 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELF--------LGG-------FP-NVTSVDYSSV----------VV-AAMQACYAH-V--PQ   90 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHH--------HTT-------CC-CEEEEESCHH----------HH-HHHHHHTTT-C--TT
T ss_pred             CCCCeEEEECCCCcHHHHHHH--------HcC-------CC-cEEEEeCCHH----------HH-HHHHHhccc-C--CC
Confidence            346799999999999988766        321       22 7888887543          11 222222211 0  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.++.   +++....+|++++|++++..++|.+........       .   ..        .....+...+|+.=.+-|
T Consensus        91 i~~~~---~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~-------~---~~--------~~~~~~~~~~l~~~~~~L  149 (215)
T 2pxx_A           91 LRWET---MDVRKLDFPSASFDVVLEKGTLDALLAGERDPW-------T---VS--------SEGVHTVDQVLSEVSRVL  149 (215)
T ss_dssp             CEEEE---CCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTT-------S---CC--------HHHHHHHHHHHHHHHHHE
T ss_pred             cEEEE---cchhcCCCCCCcccEEEECcchhhhcccccccc-------c---cc--------cchhHHHHHHHHHHHHhC
Confidence            13333   677777889999999999998887642211100       0   00        012356667777777889


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||++++..++.
T Consensus       150 kpgG~li~~~~~~  162 (215)
T 2pxx_A          150 VPGGRFISMTSAA  162 (215)
T ss_dssp             EEEEEEEEEESCC
T ss_pred             cCCCEEEEEeCCC
Confidence            9999999988765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.44  E-value=7.2e-07  Score=73.83  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +.+|+|+|||+|..+..++        ++         ..+|+..|+...-       +....+.... .+.     .+ 
T Consensus        33 ~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~~-------~~~a~~~~~~-~~~-----~~-   81 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLA--------AN---------GYDVDAWDKNAMS-------IANVERIKSI-ENL-----DN-   81 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHHH-------HHHHHHHHHH-HTC-----TT-
T ss_pred             CCeEEEEcCCCCHHHHHHH--------HC---------CCeEEEEECCHHH-------HHHHHHHHHh-CCC-----CC-
Confidence            4699999999999887766        32         2588898875430       1111111111 111     12 


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                       +..+.+++....+ ++++|+++++.++||++.                               .+...+|+.=.+-|+|
T Consensus        82 -~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~~  128 (199)
T 2xvm_A           82 -LHTRVVDLNNLTF-DRQYDFILSTVVLMFLEA-------------------------------KTIPGLIANMQRCTKP  128 (199)
T ss_dssp             -EEEEECCGGGCCC-CCCEEEEEEESCGGGSCG-------------------------------GGHHHHHHHHHHTEEE
T ss_pred             -cEEEEcchhhCCC-CCCceEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCC
Confidence             2223367777766 889999999999999642                               1122334433567889


Q ss_pred             CCeEEEEec
Q 024331          211 EGRMVLTFL  219 (269)
Q Consensus       211 GG~lv~~~~  219 (269)
                      ||++++...
T Consensus       129 gG~l~~~~~  137 (199)
T 2xvm_A          129 GGYNLIVAA  137 (199)
T ss_dssp             EEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            999877654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.44  E-value=4.7e-07  Score=79.06  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ++..+|+|+|||+|..+..+.        ++         ..+|+..|+...          +. +..+++..      +
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~~-~~a~~~~~------~   94 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLA--------DS---------FGTVEGLELSAD----------ML-AIARRRNP------D   94 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHT--------TT---------SSEEEEEESCHH----------HH-HHHHHHCT------T
T ss_pred             CCCCcEEEeCCcCCHHHHHHH--------Hc---------CCeEEEEECCHH----------HH-HHHHhhCC------C
Confidence            446899999999999887665        32         247888887543          21 22222211      1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -.|+.   +++....+ ++++|+++++. ++||+..                              ..|+..+|+.=++-
T Consensus        95 ~~~~~---~d~~~~~~-~~~fD~v~~~~~~l~~~~~------------------------------~~~~~~~l~~~~~~  140 (263)
T 3pfg_A           95 AVLHH---GDMRDFSL-GRRFSAVTCMFSSIGHLAG------------------------------QAELDAALERFAAH  140 (263)
T ss_dssp             SEEEE---CCTTTCCC-SCCEEEEEECTTGGGGSCH------------------------------HHHHHHHHHHHHHT
T ss_pred             CEEEE---CChHHCCc-cCCcCEEEEcCchhhhcCC------------------------------HHHHHHHHHHHHHh
Confidence            13444   77777666 78999999998 9999522                              13455566666788


Q ss_pred             hccCCeEEEEec
Q 024331          208 LVAEGRMVLTFL  219 (269)
Q Consensus       208 L~pGG~lv~~~~  219 (269)
                      |+|||++++...
T Consensus       141 L~pgG~l~i~~~  152 (263)
T 3pfg_A          141 VLPDGVVVVEPW  152 (263)
T ss_dssp             EEEEEEEEECCC
T ss_pred             cCCCcEEEEEec
Confidence            899999999753

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.44  E-value=1.2e-06  Score=78.37  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             ceEEEeecCCC---CcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           51 KVAIADLGCSS---GPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        51 ~~~IaD~GCs~---G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .-+|+|+|||+   |..+. .+       .+++       |..+|+..|+...          ++ +..+++....-   
T Consensus        78 ~~~vLDlGcG~pt~G~~~~-~~-------~~~~-------p~~~v~~vD~sp~----------~l-~~Ar~~~~~~~---  128 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHE-VA-------QSVN-------PDARVVYVDIDPM----------VL-THGRALLAKDP---  128 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHH-HH-------HHHC-------TTCEEEEEESSHH----------HH-HHHHHHHTTCT---
T ss_pred             CCEEEEECCCCCCCChHHH-HH-------HHhC-------CCCEEEEEECChH----------HH-HHHHHhcCCCC---
Confidence            46999999999   94332 22       1332       5689999998543          22 11222221100   


Q ss_pred             CceEEeecCCCccCC-----------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHH
Q 024331          128 GQCFFTGVPGSFYGR-----------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRD  196 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~-----------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D  196 (269)
                      +-.|+   .+++...           .+|-+++|+++++..|||+++- .               +..+.+.+       
T Consensus       129 ~v~~~---~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-~---------------~~~~l~~~-------  182 (274)
T 2qe6_A          129 NTAVF---TADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-V---------------VDRVVGAY-------  182 (274)
T ss_dssp             TEEEE---ECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-T---------------HHHHHHHH-------
T ss_pred             CeEEE---EeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcH-H---------------HHHHHHHH-------
Confidence            12344   4787642           3565789999999999997542 0               11222222       


Q ss_pred             HHHHHhhhhhhhccCCeEEEEecccC
Q 024331          197 FSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       197 ~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                              ++-|+|||+|+++.+..+
T Consensus       183 --------~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          183 --------RDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             --------HHHSCTTCEEEEEEEBCS
T ss_pred             --------HHhCCCCcEEEEEEecCc
Confidence                    556779999999998764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.43  E-value=4.4e-07  Score=84.40  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..++        +++       |..+++..|+|.-        +.       . ... .   .
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~-------~-a~~-~---~  246 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIV--------AKY-------PSINAINFDLPHV--------IQ-------D-APA-F---S  246 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HT-------T-CCC-C---T
T ss_pred             cCCCEEEEeCCCcCHHHHHHH--------HhC-------CCCEEEEEehHHH--------HH-------h-hhh-c---C
Confidence            346899999999999988877        654       6789999998421        11       0 000 0   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +.-+.|+|+. .+|++  |++++++.||+.+.                               .+..++|+.=++-|
T Consensus       247 ~--v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L  290 (368)
T 3reo_A          247 G--VEHLGGDMFD-GVPKG--DAIFIKWICHDWSD-------------------------------EHCLKLLKNCYAAL  290 (368)
T ss_dssp             T--EEEEECCTTT-CCCCC--SEEEEESCGGGBCH-------------------------------HHHHHHHHHHHHHS
T ss_pred             C--CEEEecCCCC-CCCCC--CEEEEechhhcCCH-------------------------------HHHHHHHHHHHHHc
Confidence            2  2334599997 78876  99999999985321                               22334444445678


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++.-...++
T Consensus       291 ~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          291 PDHGKVIVAEYILPP  305 (368)
T ss_dssp             CTTCEEEEEECCCCS
T ss_pred             CCCCEEEEEEeccCC
Confidence            899999998776554

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.43  E-value=3.2e-07  Score=84.34  Aligned_cols=109  Identities=23%  Similarity=0.228  Sum_probs=72.3

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~  127 (269)
                      +...+|+|+|||+|..+..++        +++       |..+++..|+|.-        +.      +++.. .+.   
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~------~~~~~~~~~---  230 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVL--------REH-------PGLQGVLLDRAEV--------VA------RHRLDAPDV---  230 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHH--------HHC-------TTEEEEEEECHHH--------HT------TCCCCCGGG---
T ss_pred             cCCceEEEECCccCHHHHHHH--------HHC-------CCCEEEEecCHHH--------hh------cccccccCC---
Confidence            456899999999999888777        554       6789999998532        10      00000 000   


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       .-.+.-+.++|+ ..+|  ++|+++++.+||..++                               .+...+|+.=++-
T Consensus       231 -~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~  275 (348)
T 3lst_A          231 -AGRWKVVEGDFL-REVP--HADVHVLKRILHNWGD-------------------------------EDSVRILTNCRRV  275 (348)
T ss_dssp             -TTSEEEEECCTT-TCCC--CCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHT
T ss_pred             -CCCeEEEecCCC-CCCC--CCcEEEEehhccCCCH-------------------------------HHHHHHHHHHHHh
Confidence             112333458998 6677  9999999999985322                               1233445544677


Q ss_pred             hccCCeEEEEecccCCC
Q 024331          208 LVAEGRMVLTFLGRKSQ  224 (269)
Q Consensus       208 L~pGG~lv~~~~g~~~~  224 (269)
                      |+|||++++.....++.
T Consensus       276 LkpgG~l~i~e~~~~~~  292 (348)
T 3lst_A          276 MPAHGRVLVIDAVVPEG  292 (348)
T ss_dssp             CCTTCEEEEEECCBCSS
T ss_pred             cCCCCEEEEEEeccCCC
Confidence            88999999987765543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.42  E-value=2e-06  Score=79.05  Aligned_cols=112  Identities=16%  Similarity=0.227  Sum_probs=73.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..+..++        +++       |..+++..|+|.-        +....+.+.. .+..    .
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~~-~~~~----~  240 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAML--------KHF-------PELDSTILNLPGA--------IDLVNENAAE-KGVA----D  240 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHH--------HHC-------TTCEEEEEECGGG--------HHHHHHHHHH-TTCT----T
T ss_pred             CCCCEEEEECCcccHHHHHHH--------HHC-------CCCeEEEEecHHH--------HHHHHHHHHh-cCCC----C
Confidence            356799999999999888777        553       5689999999432        2222222221 1110    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .  +..+.++|....+|+.  |+++++..+|..++                               .+...+|+.=++-|
T Consensus       241 ~--v~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d-------------------------------~~~~~~l~~~~~~L  285 (359)
T 1x19_A          241 R--MRGIAVDIYKESYPEA--DAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAM  285 (359)
T ss_dssp             T--EEEEECCTTTSCCCCC--SEEEEESCGGGSCH-------------------------------HHHHHHHHHHHTTC
T ss_pred             C--EEEEeCccccCCCCCC--CEEEEechhccCCH-------------------------------HHHHHHHHHHHHhc
Confidence            1  2234589988888876  99999999984211                               23445555556778


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++.....++
T Consensus       286 ~pgG~l~i~e~~~~~  300 (359)
T 1x19_A          286 RSGGRLLILDMVIDD  300 (359)
T ss_dssp             CTTCEEEEEEECCCC
T ss_pred             CCCCEEEEEecccCC
Confidence            899999888766543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.41  E-value=5e-07  Score=73.51  Aligned_cols=101  Identities=16%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..+.        ++.         .+|+..|+...          +. +..++. ..     .-
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~--------~~~---------~~v~~vD~s~~----------~~-~~a~~~-~~-----~v   62 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLL--------EFA---------TKLYCIDINVI----------AL-KEVKEK-FD-----SV   62 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHH--------TTE---------EEEEEECSCHH----------HH-HHHHHH-CT-----TS
T ss_pred             CCCeEEEECCCCCHHHHHHH--------hhc---------CeEEEEeCCHH----------HH-HHHHHh-CC-----Cc
Confidence            46799999999999988776        331         38888887543          11 112222 11     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   ++   ..+|++++|+++++.++|++.+                  +               ..+|+.=.+-|+
T Consensus        63 ~~~~---~d---~~~~~~~~D~v~~~~~l~~~~~------------------~---------------~~~l~~~~~~L~  103 (170)
T 3i9f_A           63 ITLS---DP---KEIPDNSVDFILFANSFHDMDD------------------K---------------QHVISEVKRILK  103 (170)
T ss_dssp             EEES---SG---GGSCTTCEEEEEEESCSTTCSC------------------H---------------HHHHHHHHHHEE
T ss_pred             EEEe---CC---CCCCCCceEEEEEccchhcccC------------------H---------------HHHHHHHHHhcC
Confidence            2333   44   6688999999999999998632                  1               122222245677


Q ss_pred             cCCeEEEEecccCC
Q 024331          210 AEGRMVLTFLGRKS  223 (269)
Q Consensus       210 pGG~lv~~~~g~~~  223 (269)
                      |||++++..+....
T Consensus       104 pgG~l~~~~~~~~~  117 (170)
T 3i9f_A          104 DDGRVIIIDWRKEN  117 (170)
T ss_dssp             EEEEEEEEEECSSC
T ss_pred             CCCEEEEEEcCccc
Confidence            99999999876653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.41  E-value=4.4e-07  Score=84.34  Aligned_cols=104  Identities=20%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|..+..++        +++       |..+++..|+|.-        +..    .+    . .   .
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~----a~----~-~---~  244 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIA--------AHY-------PTIKGVNFDLPHV--------ISE----AP----Q-F---P  244 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HTT----CC----C-C---T
T ss_pred             cCCCEEEEeCCCCCHHHHHHH--------HHC-------CCCeEEEecCHHH--------HHh----hh----h-c---C
Confidence            346899999999999888777        654       6788999998531        110    00    0 0   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +.-+.|+|+. .+|++  |++++++.||..+.                               ++...+|+.=++-|
T Consensus       245 ~--v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L  288 (364)
T 3p9c_A          245 G--VTHVGGDMFK-EVPSG--DTILMKWILHDWSD-------------------------------QHCATLLKNCYDAL  288 (364)
T ss_dssp             T--EEEEECCTTT-CCCCC--SEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHS
T ss_pred             C--eEEEeCCcCC-CCCCC--CEEEehHHhccCCH-------------------------------HHHHHHHHHHHHHc
Confidence            2  2335599998 88976  99999999984211                               23344455446678


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++.-...++
T Consensus       289 ~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          289 PAHGKVVLVQCILPV  303 (364)
T ss_dssp             CTTCEEEEEECCBCS
T ss_pred             CCCCEEEEEEeccCC
Confidence            899999998776654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.40  E-value=4.5e-07  Score=81.08  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=68.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCC-CC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGA-AG  128 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~-~~  128 (269)
                      +-+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..+++. ..+... .+
T Consensus        83 ~~~vLDlGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~~-~~a~~~~~~~~~~~~~~  134 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFL--------DL---------GWEVTALELSTS----------VL-AAFRKRLAEAPADVRDR  134 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHH--------TT---------TCCEEEEESCHH----------HH-HHHHHHHHTSCHHHHTT
T ss_pred             CCcEEEEeccCCHHHHHHH--------Hc---------CCeEEEEECCHH----------HH-HHHHHHHhhcccccccc
Confidence            3499999999999988777        32         267899998654          11 1122111 110000 01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEe-ccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFH-SSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~-Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -.|+.   +++....+ ++++|+++ +...+||++.                               .|...+|+.=++-
T Consensus       135 v~~~~---~d~~~~~~-~~~fD~v~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~  179 (299)
T 3g2m_A          135 CTLVQ---GDMSAFAL-DKRFGTVVISSGSINELDE-------------------------------ADRRGLYASVREH  179 (299)
T ss_dssp             EEEEE---CBTTBCCC-SCCEEEEEECHHHHTTSCH-------------------------------HHHHHHHHHHHHH
T ss_pred             eEEEe---CchhcCCc-CCCcCEEEECCcccccCCH-------------------------------HHHHHHHHHHHHH
Confidence            12433   78887666 78999887 5678888521                               2344455555677


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||+|++.++...
T Consensus       180 L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          180 LEPGGKFLLSLAMSE  194 (299)
T ss_dssp             EEEEEEEEEEEECCH
T ss_pred             cCCCcEEEEEeecCc
Confidence            889999999988764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.39  E-value=5.2e-07  Score=80.27  Aligned_cols=108  Identities=12%  Similarity=0.016  Sum_probs=69.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .++.+|+|+|||+|..++.++        +.+      ++..+|+..|+...          +. +..+++... .    
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~--------~~~------~~~~~v~gvD~s~~----------~~-~~a~~~~~~-~----   70 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLM--------PLL------PEGSKYTGIDSGET----------LL-AEARELFRL-L----   70 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHT--------TTS------CTTCEEEEEESCHH----------HH-HHHHHHHHS-S----
T ss_pred             CCCCeEEEecCCCCHHHHHHH--------HhC------CCCCEEEEEECCHH----------HH-HHHHHHHHh-c----
Confidence            457899999999998887766        332      12489999998654          11 112222111 0    


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +.-+..+.+++....++ +++|++++..++|++...                                 ..+|+.=.+-|
T Consensus        71 ~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L  116 (284)
T 3gu3_A           71 PYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTP---------------------------------ETMLQKMIHSV  116 (284)
T ss_dssp             SSEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSH---------------------------------HHHHHHHHHTE
T ss_pred             CCceEEEEcchhhcCcC-CCeeEEEECChhhcCCCH---------------------------------HHHHHHHHHHc
Confidence            11223344788887775 699999999999986321                                 12222224678


Q ss_pred             ccCCeEEEEecc
Q 024331          209 VAEGRMVLTFLG  220 (269)
Q Consensus       209 ~pGG~lv~~~~g  220 (269)
                      +|||.+++..+.
T Consensus       117 kpgG~l~~~~~~  128 (284)
T 3gu3_A          117 KKGGKIICFEPH  128 (284)
T ss_dssp             EEEEEEEEEECC
T ss_pred             CCCCEEEEEecc
Confidence            899999998876

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.39  E-value=9.2e-07  Score=79.46  Aligned_cols=115  Identities=14%  Similarity=0.067  Sum_probs=73.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      ....+|+|+|||+|..++.++        ..      ..|..+|+..|+...          +. +..+++. ..+.   
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la--------~~------~~~~~~v~gvD~s~~----------~~-~~a~~~~~~~~~---  168 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALD--------YS------ACPGVQLVGIDYDPE----------AL-DGATRLAAGHAL---  168 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSC--------CT------TCTTCEEEEEESCHH----------HH-HHHHHHHTTSTT---
T ss_pred             CCCCEEEEecCCCCHHHHHHH--------Hh------cCCCCeEEEEECCHH----------HH-HHHHHHHHhcCC---
Confidence            346899999999998877553        11      236789999998554          21 1222221 1111   


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       .--+..+.+++....++ +++|+++++..+|++..                   +.           ....||+.=.+-
T Consensus       169 -~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~-------------------~~-----------~~~~~l~~~~~~  216 (305)
T 3ocj_A          169 -AGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPD-------------------DA-----------RVTELYRRFWQA  216 (305)
T ss_dssp             -GGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCC-------------------HH-----------HHHHHHHHHHHH
T ss_pred             -CCceEEEECchhcCCcc-CCeEEEEECChhhhcCC-------------------HH-----------HHHHHHHHHHHh
Confidence             11122234889998888 99999999999998532                   11           112233333566


Q ss_pred             hccCCeEEEEecccCC
Q 024331          208 LVAEGRMVLTFLGRKS  223 (269)
Q Consensus       208 L~pGG~lv~~~~g~~~  223 (269)
                      |+|||+++++.+.+..
T Consensus       217 LkpgG~l~i~~~~~~~  232 (305)
T 3ocj_A          217 LKPGGALVTSFLTPPP  232 (305)
T ss_dssp             EEEEEEEEEECCCCCT
T ss_pred             cCCCeEEEEEecCCCC
Confidence            7899999999887653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.39  E-value=1.8e-06  Score=76.26  Aligned_cols=108  Identities=16%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..++        +++       + .+|+..|+..+          +. +..+++. ..+.  ..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~--------~~~-------~-~~v~gvd~s~~----------~~-~~a~~~~~~~~~--~~  114 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAV--------EKY-------D-VNVVGLTLSKN----------QA-NHVQQLVANSEN--LR  114 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH-------C-CEEEEEESCHH----------HH-HHHHHHHHTCCC--CS
T ss_pred             CcCEEEEECCcccHHHHHHH--------HHc-------C-CEEEEEECCHH----------HH-HHHHHHHHhcCC--CC
Confidence            45799999999999888776        443       1 48899997654          11 1122111 1111  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      ++  ..+.+++..  +| +++|+++|..++|++..                               .|+..+|+.=.+-|
T Consensus       115 ~~--~~~~~d~~~--~~-~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L  158 (287)
T 1kpg_A          115 SK--RVLLAGWEQ--FD-EPVDRIVSIGAFEHFGH-------------------------------ERYDAFFSLAHRLL  158 (287)
T ss_dssp             CE--EEEESCGGG--CC-CCCSEEEEESCGGGTCT-------------------------------TTHHHHHHHHHHHS
T ss_pred             Ce--EEEECChhh--CC-CCeeEEEEeCchhhcCh-------------------------------HHHHHHHHHHHHhc
Confidence            22  122366644  45 89999999999998632                               11223333335678


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||++++..+...
T Consensus       159 kpgG~l~~~~~~~~  172 (287)
T 1kpg_A          159 PADGVMLLHTITGL  172 (287)
T ss_dssp             CTTCEEEEEEEEEC
T ss_pred             CCCCEEEEEEecCC
Confidence            89999999988764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.38  E-value=2.4e-06  Score=72.78  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ++..+|+|+|||+|..+..+.        ++.       +  +|+..|+...          +. +..+++. .     +
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~--------~~~-------~--~v~~~D~s~~----------~~-~~a~~~~-~-----~   84 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFT--------KEF-------G--DTAGLELSED----------ML-THARKRL-P-----D   84 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHH--------HHH-------S--EEEEEESCHH----------HH-HHHHHHC-T-----T
T ss_pred             CCCCeEEEecccCCHHHHHHH--------HhC-------C--cEEEEeCCHH----------HH-HHHHHhC-C-----C
Confidence            346799999999999988776        443       2  7888886543          21 2222221 1     1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -.++.   +++....+ ++++|+++|+. ++||+..                              ..|+..+|+.=.+-
T Consensus        85 ~~~~~---~d~~~~~~-~~~~D~v~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~  130 (239)
T 3bxo_A           85 ATLHQ---GDMRDFRL-GRKFSAVVSMFSSVGYLKT------------------------------TEELGAAVASFAEH  130 (239)
T ss_dssp             CEEEE---CCTTTCCC-SSCEEEEEECTTGGGGCCS------------------------------HHHHHHHHHHHHHT
T ss_pred             CEEEE---CCHHHccc-CCCCcEEEEcCchHhhcCC------------------------------HHHHHHHHHHHHHh
Confidence            13333   67776655 78999999544 8888532                              02445566665778


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||++++......
T Consensus       131 L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          131 LEPGGVVVVEPWWFP  145 (239)
T ss_dssp             EEEEEEEEECCCCCT
T ss_pred             cCCCeEEEEEeccCc
Confidence            889999999865443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.36  E-value=1.3e-06  Score=80.71  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ++        +..+|+..|+. . .      +....+... ..+..-   .-
T Consensus        66 ~~~~VLDvGcG~G~~~~~la--------~~--------g~~~v~gvD~s-~-~------l~~a~~~~~-~~~~~~---~v  117 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAA--------KA--------GARKVIGIECS-S-I------SDYAVKIVK-ANKLDH---VV  117 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HT--------TCSEEEEEECS-T-H------HHHHHHHHH-HTTCTT---TE
T ss_pred             CCCEEEEEeccchHHHHHHH--------HC--------CCCEEEEECcH-H-H------HHHHHHHHH-HcCCCC---cE
Confidence            35799999999999888776        32        34699999987 4 2      211111111 122110   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .++   -+++....+|++++|+++|....+++...                              .++..+|+.+.+-|+
T Consensus       118 ~~~---~~d~~~~~~~~~~fD~Iis~~~~~~l~~~------------------------------~~~~~~l~~~~r~Lk  164 (349)
T 3q7e_A          118 TII---KGKVEEVELPVEKVDIIISEWMGYCLFYE------------------------------SMLNTVLHARDKWLA  164 (349)
T ss_dssp             EEE---ESCTTTCCCSSSCEEEEEECCCBBTBTBT------------------------------CCHHHHHHHHHHHEE
T ss_pred             EEE---ECcHHHccCCCCceEEEEEccccccccCc------------------------------hhHHHHHHHHHHhCC
Confidence            333   38888888999999999997655554221                              234467778889999


Q ss_pred             cCCeEEEE
Q 024331          210 AEGRMVLT  217 (269)
Q Consensus       210 pGG~lv~~  217 (269)
                      |||+++..
T Consensus       165 pgG~li~~  172 (349)
T 3q7e_A          165 PDGLIFPD  172 (349)
T ss_dssp             EEEEEESC
T ss_pred             CCCEEccc
Confidence            99999743

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.36  E-value=1.7e-06  Score=78.93  Aligned_cols=142  Identities=20%  Similarity=0.140  Sum_probs=80.3

Q ss_pred             HHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHH
Q 024331           36 TEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKI  115 (269)
Q Consensus        36 l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~  115 (269)
                      |++++..+.  ......+|+|+|||||..|..++        ++        +.-+|+..|+..+          ++...
T Consensus        73 l~~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~--------~~--------ga~~V~aVDvs~~----------mL~~a  124 (291)
T 3hp7_A           73 LEKALAVFN--LSVEDMITIDIGASTGGFTDVML--------QN--------GAKLVYAVDVGTN----------QLVWK  124 (291)
T ss_dssp             HHHHHHHTT--CCCTTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEECSSSS----------CSCHH
T ss_pred             HHHHHHhcC--CCccccEEEecCCCccHHHHHHH--------hC--------CCCEEEEEECCHH----------HHHHH
Confidence            444444432  12345799999999999998776        32        2368999999988          44332


Q ss_pred             HHHhcCCCCCCCCceEEeecCCCcc---CCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHH
Q 024331          116 LRKQLGSASGAAGQCFFTGVPGSFY---GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ  192 (269)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~vpgSFy---~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q  192 (269)
                      ++++        +.+-.. -..++.   ..-+|..++|++++..++|++..                     +.++.   
T Consensus       125 ~r~~--------~rv~~~-~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~~---------------------vL~e~---  171 (291)
T 3hp7_A          125 LRQD--------DRVRSM-EQYNFRYAEPVDFTEGLPSFASIDVSFISLNL---------------------ILPAL---  171 (291)
T ss_dssp             HHTC--------TTEEEE-CSCCGGGCCGGGCTTCCCSEEEECCSSSCGGG---------------------THHHH---
T ss_pred             HHhC--------ccccee-cccCceecchhhCCCCCCCEEEEEeeHhhHHH---------------------HHHHH---
Confidence            3321        111111 001111   11257778999999999988622                     12233   


Q ss_pred             HHHHHHHHHhhhhhhhccCCeEEEEec-----ccCCCCC--CChhhhHHHHHHHHHHHHHHHccC
Q 024331          193 FQRDFSLFLKCRSEELVAEGRMVLTFL-----GRKSQDP--SSKECCYIWELLATALNNMVSEVT  250 (269)
Q Consensus       193 ~~~D~~~FL~~Ra~EL~pGG~lv~~~~-----g~~~~~~--~~~~~~~~~~~l~~~l~~mv~eG~  250 (269)
                                  ++-|+|||++++.+-     ++..-+.  ...+.......+.++..-+.+.|+
T Consensus       172 ------------~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf  224 (291)
T 3hp7_A          172 ------------AKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGF  224 (291)
T ss_dssp             ------------HHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTE
T ss_pred             ------------HHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCC
Confidence                        567779999999731     1111000  000111123466777777788887

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.36  E-value=5.6e-07  Score=78.83  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=67.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        ++         ..+|+..|+...          +. +..+++..       .
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~----------~l-~~a~~~~~-------~   98 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQ--------ER---------GFEVVLVDPSKE----------ML-EVAREKGV-------K   98 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCHH----------HH-HHHHHHTC-------S
T ss_pred             CCCeEEEeCCCcCHHHHHHH--------Hc---------CCeEEEEeCCHH----------HH-HHHHhhcC-------C
Confidence            46799999999999887665        22         257889887644          21 22222211       1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .++.   +++....+|++++|+++++. .+||..+                                 ...+|+.=.+-|
T Consensus        99 ~~~~---~d~~~~~~~~~~fD~v~~~~~~~~~~~~---------------------------------~~~~l~~~~~~L  142 (260)
T 2avn_A           99 NVVE---AKAEDLPFPSGAFEAVLALGDVLSYVEN---------------------------------KDKAFSEIRRVL  142 (260)
T ss_dssp             CEEE---CCTTSCCSCTTCEEEEEECSSHHHHCSC---------------------------------HHHHHHHHHHHE
T ss_pred             CEEE---CcHHHCCCCCCCEEEEEEcchhhhcccc---------------------------------HHHHHHHHHHHc
Confidence            2444   67788889999999999975 5666322                                 112233335677


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||+++++++.+.
T Consensus       143 kpgG~l~~~~~~~~  156 (260)
T 2avn_A          143 VPDGLLIATVDNFY  156 (260)
T ss_dssp             EEEEEEEEEEEBHH
T ss_pred             CCCeEEEEEeCChH
Confidence            89999999987653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.35  E-value=9.5e-07  Score=73.84  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=66.1

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF  132 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~  132 (269)
                      +|+|+|||+|..+..+.        +.         ..+|+..|+...       .+....+.+.. .+.        -+
T Consensus        32 ~vLdiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~-------~~~~a~~~~~~-~~~--------~~   78 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLA--------SL---------GYEVTAVDQSSV-------GLAKAKQLAQE-KGV--------KI   78 (202)
T ss_dssp             EEEECCCSCTHHHHHHH--------TT---------TCEEEEECSSHH-------HHHHHHHHHHH-HTC--------CE
T ss_pred             CEEEECCCCCHhHHHHH--------hC---------CCeEEEEECCHH-------HHHHHHHHHHh-cCC--------ce
Confidence            99999999999887665        22         258899987543       01111111111 111        12


Q ss_pred             eecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 024331          133 TGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG  212 (269)
Q Consensus       133 ~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  212 (269)
                      ..+.+++....+|++++|++++++ .|+    +                            ..|...+|+.=.+-|+|||
T Consensus        79 ~~~~~d~~~~~~~~~~fD~v~~~~-~~~----~----------------------------~~~~~~~l~~~~~~L~pgG  125 (202)
T 2kw5_A           79 TTVQSNLADFDIVADAWEGIVSIF-CHL----P----------------------------SSLRQQLYPKVYQGLKPGG  125 (202)
T ss_dssp             EEECCBTTTBSCCTTTCSEEEEEC-CCC----C----------------------------HHHHHHHHHHHHTTCCSSE
T ss_pred             EEEEcChhhcCCCcCCccEEEEEh-hcC----C----------------------------HHHHHHHHHHHHHhcCCCc
Confidence            223477777788999999999853 343    1                            0233444555567788999


Q ss_pred             eEEEEecccCC
Q 024331          213 RMVLTFLGRKS  223 (269)
Q Consensus       213 ~lv~~~~g~~~  223 (269)
                      ++++..+....
T Consensus       126 ~l~~~~~~~~~  136 (202)
T 2kw5_A          126 VFILEGFAPEQ  136 (202)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecccc
Confidence            99999886643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.34  E-value=8.4e-07  Score=76.61  Aligned_cols=138  Identities=11%  Similarity=0.081  Sum_probs=78.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +.       .+ -+|+..|+..+          ++ +.++++... .    .
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~--------~~-------~~-~~v~gvD~s~~----------~l-~~a~~~~~~-~----~  107 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQ--------EA-------PI-DEHWIIECNDG----------VF-QRLRDWAPR-Q----T  107 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHH--------TS-------CE-EEEEEEECCHH----------HH-HHHHHHGGG-C----S
T ss_pred             CCCeEEEEeccCCHHHHHHH--------hc-------CC-CeEEEEcCCHH----------HH-HHHHHHHHh-c----C
Confidence            45899999999998887665        21       12 38899998765          22 222222110 0    0


Q ss_pred             eEEeecCCCccCC--CCCCCceeeEec-cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          130 CFFTGVPGSFYGR--LFPRNSVHLFHS-SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       130 ~f~~~vpgSFy~~--lfP~~Svd~~~S-s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      .-+.-+-+++...  .||++++|++++ .++++. ....                            ..++..+|+.=++
T Consensus       108 ~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~----------------------------~~~~~~~l~~~~r  158 (236)
T 1zx0_A          108 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSE-ETWH----------------------------THQFNFIKNHAFR  158 (236)
T ss_dssp             SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBG-GGTT----------------------------THHHHHHHHTHHH
T ss_pred             CCeEEEecCHHHhhcccCCCceEEEEECCcccch-hhhh----------------------------hhhHHHHHHHHHH
Confidence            1122234787776  799999999999 666522 1110                            0223344554467


Q ss_pred             hhccCCeEEEEecccCC---CCCCChhhhHHHHHHHHHHHHHHHccCc
Q 024331          207 ELVAEGRMVLTFLGRKS---QDPSSKECCYIWELLATALNNMVSEVTK  251 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~---~~~~~~~~~~~~~~l~~~l~~mv~eG~i  251 (269)
                      -|||||+|++..+....   ..... .....|  -...+..|.+.|.-
T Consensus       159 ~LkpgG~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~l~~aGF~  203 (236)
T 1zx0_A          159 LLKPGGVLTYCNLTSWGELMKSKYS-DITIMF--EETQVPALLEAGFR  203 (236)
T ss_dssp             HEEEEEEEEECCHHHHHHHTTTTCS-CHHHHH--HHHTHHHHHHTTCC
T ss_pred             hcCCCeEEEEEecCcHHHhhchhhh-hhhhhc--cHHHHHHHHHCCCC
Confidence            78899999987654321   11111 111111  24445678888874

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.34  E-value=6.1e-07  Score=76.73  Aligned_cols=104  Identities=19%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        ++        ...+|+..|+...          +. +..+++...     .+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~--------~~--------~~~~v~~vD~s~~----------~~-~~a~~~~~~-----~~   90 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAH--------EH--------GASYVLGLDLSEK----------ML-ARARAAGPD-----TG   90 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEESCHH----------HH-HHHHHTSCS-----SS
T ss_pred             CCCEEEEEcCcCCHHHHHHH--------HC--------CCCeEEEEcCCHH----------HH-HHHHHhccc-----CC
Confidence            45799999999999877665        32        1128888887543          21 222222111     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.+++....+|++++|+++++.++|++..                  .               ..+|+.=++-|+
T Consensus        91 --~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------~---------------~~~l~~~~~~L~  135 (243)
T 3bkw_A           91 --ITYERADLDKLHLPQDSFDLAYSSLALHYVED------------------V---------------ARLFRTVHQALS  135 (243)
T ss_dssp             --EEEEECCGGGCCCCTTCEEEEEEESCGGGCSC------------------H---------------HHHHHHHHHHEE
T ss_pred             --ceEEEcChhhccCCCCCceEEEEeccccccch------------------H---------------HHHHHHHHHhcC
Confidence              22234788888889999999999999998632                  1               122222256678


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||+++++...
T Consensus       136 pgG~l~~~~~~  146 (243)
T 3bkw_A          136 PGGHFVFSTEH  146 (243)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cCcEEEEEeCC
Confidence            99999998753

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.33  E-value=6.9e-06  Score=71.80  Aligned_cols=119  Identities=11%  Similarity=0.008  Sum_probs=69.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..++        +++      .|..+|+..|+....+-+- ..+....+.+.. .+..    .+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~--------~~~------g~~~~v~gvD~s~~~~~~~-~~~~~a~~~~~~-~~~~----~~  102 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLA--------DQV------GSSGHVTGIDIASPDYGAP-LTLGQAWNHLLA-GPLG----DR  102 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH------CTTCEEEEECSSCTTCCSS-SCHHHHHHHHHT-STTG----GG
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEEECCccccccH-HHHHHHHHHHHh-cCCC----Cc
Confidence            45799999999999988776        443      1457999999876511000 002111111111 1110    12


Q ss_pred             eEEeecCCC-c--cCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          130 CFFTGVPGS-F--YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       130 ~f~~~vpgS-F--y~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      +  ..+.++ +  ....||++++|+++|..++|++...                  .               .+++...+
T Consensus       103 v--~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~------------------~---------------~~~~~~~~  147 (275)
T 3bkx_A          103 L--TVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASA------------------N---------------ALALLFKN  147 (275)
T ss_dssp             E--EEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCH------------------H---------------HHHHHHHH
T ss_pred             e--EEEECChhhhccCCCCCCCEEEEEEccchhhCCCH------------------H---------------HHHHHHHH
Confidence            2  223355 4  3456788999999999999985331                  0               12233334


Q ss_pred             hhccCCeEEEEecccCC
Q 024331          207 ELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~  223 (269)
                      -++|||++++..+....
T Consensus       148 l~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          148 MAAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             HTTTCSEEEEEEECSSC
T ss_pred             HhCCCCEEEEEEecCCC
Confidence            44579999999877654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.33  E-value=3.2e-07  Score=79.48  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-------HhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEec
Q 024331           23 LVQEKVISIAKPITEEAM-------TKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLN   95 (269)
Q Consensus        23 ~~Q~~~~~~~~~~l~~ai-------~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~n   95 (269)
                      ..|+++++...|.+.-..       .+++   ....-+|+|+|||+|..++.++        ++.       |+..|+..
T Consensus         3 ~~q~~~~~~~~~~~~~~~~~~~~d~~~~f---~~~~~~vLDiGcG~G~~~~~lA--------~~~-------p~~~v~gi   64 (218)
T 3dxy_A            3 SGQEHALENYWPVMGVEFSEDMLDFPALF---GREAPVTLEIGFGMGASLVAMA--------KDR-------PEQDFLGI   64 (218)
T ss_dssp             ----CHHHHHHHHHBCCCCSSCCCHHHHH---SSCCCEEEEESCTTCHHHHHHH--------HHC-------TTSEEEEE
T ss_pred             HHHHHHHHHHhHHhCCCCCCCCCCHHHHc---CCCCCeEEEEeeeChHHHHHHH--------HHC-------CCCeEEEE
Confidence            357777777777664210       1111   1135699999999999988777        542       67899999


Q ss_pred             CCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCceEEeecCCCccCC---CCCCCceeeEecccccccc
Q 024331           96 DLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQCFFTGVPGSFYGR---LFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus        96 DLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~f~~~vpgSFy~~---lfP~~Svd~~~Ss~alHWL  161 (269)
                      |+..+          +... ++++. ..+.   .++-  -+.++....   .||++|+|.+++++...|-
T Consensus        65 D~s~~----------~l~~-a~~~~~~~~l---~nv~--~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~  118 (218)
T 3dxy_A           65 EVHSP----------GVGA-CLASAHEEGL---SNLR--VMCHDAVEVLHKMIPDNSLRMVQLFFPDPWH  118 (218)
T ss_dssp             CSCHH----------HHHH-HHHHHHHTTC---SSEE--EECSCHHHHHHHHSCTTCEEEEEEESCCCCC
T ss_pred             EecHH----------HHHH-HHHHHHHhCC---CcEE--EEECCHHHHHHHHcCCCChheEEEeCCCCcc
Confidence            98765          2211 11111 0111   2322  234666553   4899999999999888883

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.32  E-value=4.3e-07  Score=76.85  Aligned_cols=61  Identities=18%  Similarity=0.118  Sum_probs=45.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.                    .+|+..|+...          .                 -
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~--------------------~~v~~~D~s~~----------~-----------------~   99 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR--------------------NPVHCFDLASL----------D-----------------P   99 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC--------------------SCEEEEESSCS----------S-----------------T
T ss_pred             CCCeEEEECCcCCHHHHHhh--------------------ccEEEEeCCCC----------C-----------------c
Confidence            45799999999998765331                    46788887765          0                 1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      .++.   +++....+|++++|+++++.++||
T Consensus       100 ~~~~---~d~~~~~~~~~~fD~v~~~~~l~~  127 (215)
T 2zfu_A          100 RVTV---CDMAQVPLEDESVDVAVFCLSLMG  127 (215)
T ss_dssp             TEEE---SCTTSCSCCTTCEEEEEEESCCCS
T ss_pred             eEEE---eccccCCCCCCCEeEEEEehhccc
Confidence            2333   566777789999999999999986

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.31  E-value=3.6e-06  Score=78.61  Aligned_cols=109  Identities=16%  Similarity=0.154  Sum_probs=70.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..++.++        ++        ..-+|+..|+. + .      +....+... ..+..-   .
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la--------~~--------g~~~V~gvD~s-~-~------~~~a~~~~~-~~~~~~---~  113 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSA--------QA--------GARKVYAVEAT-K-M------ADHARALVK-ANNLDH---I  113 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHH--------HT--------TCSEEEEEESS-T-T------HHHHHHHHH-HTTCTT---T
T ss_pred             CCCCEEEEeccCcCHHHHHHH--------hc--------CCCEEEEEccH-H-H------HHHHHHHHH-HcCCCC---e
Confidence            346899999999998888766        32        12489999987 4 2      111111111 122110   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.++.   +++....+| +++|+++|....|++...                              .++..+|+.+.+-|
T Consensus       114 v~~~~---~d~~~~~~~-~~~D~Iv~~~~~~~l~~e------------------------------~~~~~~l~~~~~~L  159 (376)
T 3r0q_C          114 VEVIE---GSVEDISLP-EKVDVIISEWMGYFLLRE------------------------------SMFDSVISARDRWL  159 (376)
T ss_dssp             EEEEE---SCGGGCCCS-SCEEEEEECCCBTTBTTT------------------------------CTHHHHHHHHHHHE
T ss_pred             EEEEE---CchhhcCcC-CcceEEEEcChhhcccch------------------------------HHHHHHHHHHHhhC
Confidence            13333   788888888 899999997666665321                              23456777888899


Q ss_pred             ccCCeEEEEec
Q 024331          209 VAEGRMVLTFL  219 (269)
Q Consensus       209 ~pGG~lv~~~~  219 (269)
                      +|||+|++...
T Consensus       160 kpgG~li~~~~  170 (376)
T 3r0q_C          160 KPTGVMYPSHA  170 (376)
T ss_dssp             EEEEEEESSEE
T ss_pred             CCCeEEEEecC
Confidence            99999987543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.31  E-value=4e-06  Score=69.90  Aligned_cols=110  Identities=10%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|..++        +++     +++..+|+..|+....      .+            .     +-
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~--------~~~-----~~~~~~v~gvD~s~~~------~~------------~-----~v   65 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVIL--------ERT-----KNYKNKIIGIDKKIMD------PI------------P-----NV   65 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHH--------HHT-----TTSCEEEEEEESSCCC------CC------------T-----TC
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHc-----CCCCceEEEEeCCccC------CC------------C-----Cc
Confidence            45799999999999988877        553     1115789999987631      00            0     11


Q ss_pred             eEEeecCCCccCCC-------------------------CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHH
Q 024331          130 CFFTGVPGSFYGRL-------------------------FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPC  184 (269)
Q Consensus       130 ~f~~~vpgSFy~~l-------------------------fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~  184 (269)
                      .|+.   +++....                         +|++++|+++|..++||...                    .
T Consensus        66 ~~~~---~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~--------------------~  122 (201)
T 2plw_A           66 YFIQ---GEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN--------------------K  122 (201)
T ss_dssp             EEEE---CCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSC--------------------H
T ss_pred             eEEE---ccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC--------------------c
Confidence            2322   4555443                         68899999999999888311                    0


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecc
Q 024331          185 VLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       185 v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                      ..+.+.  ..+....+|+.=.+-|+|||.+++.++.
T Consensus       123 ~~d~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A          123 IDDHLN--SCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccCHHH--HHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence            001111  1112233444335677899999997654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.30  E-value=1.5e-06  Score=74.58  Aligned_cols=80  Identities=14%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      .-+|+|+|||+|..++.++        +++       |..+|+..|+...          +.. .++++. ..+.   .+
T Consensus        39 ~~~vLDiGcG~G~~~~~la--------~~~-------p~~~v~giD~s~~----------~l~-~a~~~~~~~~~---~n   89 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMA--------KQN-------PDINYIGIELFKS----------VIV-TAVQKVKDSEA---QN   89 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHH--------HHC-------TTSEEEEECSCHH----------HHH-HHHHHHHHSCC---SS
T ss_pred             CceEEEEecCCCHHHHHHH--------HHC-------CCCCEEEEEechH----------HHH-HHHHHHHHcCC---CC
Confidence            4689999999999988776        442       6789999998665          221 111111 0111   23


Q ss_pred             eEEeecCCCccCC--CCCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWL  161 (269)
                      +-  .+-++....  .||++++|.++..++.+|.
T Consensus        90 v~--~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~  121 (213)
T 2fca_A           90 VK--LLNIDADTLTDVFEPGEVKRVYLNFSDPWP  121 (213)
T ss_dssp             EE--EECCCGGGHHHHCCTTSCCEEEEESCCCCC
T ss_pred             EE--EEeCCHHHHHhhcCcCCcCEEEEECCCCCc
Confidence            22  233666553  3889999999987777773

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.30  E-value=4.3e-06  Score=75.19  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..++        +++        ..+|+..|+...          +. +..++.. ..+.  ..
T Consensus        90 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~----------~~-~~a~~~~~~~~~--~~  140 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAV--------ERF--------DVNVIGLTLSKN----------QH-ARCEQVLASIDT--NR  140 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH--------CCEEEEEESCHH----------HH-HHHHHHHHTSCC--SS
T ss_pred             CcCEEEEEcccchHHHHHHH--------HHC--------CCEEEEEECCHH----------HH-HHHHHHHHhcCC--CC
Confidence            45799999999999887766        443        158899987554          21 1122211 1111  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .+  ..+.+++...  | +++|++++..++|++..                               .|...+|+.=.+-|
T Consensus       141 ~v--~~~~~d~~~~--~-~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L  184 (318)
T 2fk8_A          141 SR--QVLLQGWEDF--A-EPVDRIVSIEAFEHFGH-------------------------------ENYDDFFKRCFNIM  184 (318)
T ss_dssp             CE--EEEESCGGGC--C-CCCSEEEEESCGGGTCG-------------------------------GGHHHHHHHHHHHS
T ss_pred             ce--EEEECChHHC--C-CCcCEEEEeChHHhcCH-------------------------------HHHHHHHHHHHHhc
Confidence            12  2223666553  4 89999999999998632                               12223333335678


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++..+....
T Consensus       185 kpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          185 PADGRMTVQSSVSYH  199 (318)
T ss_dssp             CTTCEEEEEEEECCC
T ss_pred             CCCcEEEEEEeccCC
Confidence            899999999887653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.29  E-value=2.6e-06  Score=78.87  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=69.8

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ++..+|+|+|||+|..+..++        +++       |.++++..|+|.-        +.       . . ...   +
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~--------~~~-------~~~~~~~~D~~~~--------~~-------~-a-~~~---~  252 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELII--------SKY-------PLIKGINFDLPQV--------IE-------N-A-PPL---S  252 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HT-------T-C-CCC---T
T ss_pred             CCCCEEEEeCCCCcHHHHHHH--------HHC-------CCCeEEEeChHHH--------HH-------h-h-hhc---C
Confidence            456899999999999988777        553       5688999998421        11       0 0 001   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +..+.++|+. .+|.  +|+++++..||++++                               .+...+|+.=++-|
T Consensus       253 ~--v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d-------------------------------~~~~~~l~~~~~~L  296 (372)
T 1fp1_D          253 G--IEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD-------------------------------EKCIEFLSNCHKAL  296 (372)
T ss_dssp             T--EEEEECCTTT-CCCC--EEEEEEESSGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             C--CEEEeCCccc-CCCC--CCEEEEecccccCCH-------------------------------HHHHHHHHHHHHhc
Confidence            2  3335589988 6786  899999999996422                               11223444445677


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++..+..+.
T Consensus       297 ~pgG~l~i~e~~~~~  311 (372)
T 1fp1_D          297 SPNGKVIIVEFILPE  311 (372)
T ss_dssp             EEEEEEEEEEEEECS
T ss_pred             CCCCEEEEEEeccCC
Confidence            899999998765543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.29  E-value=4.1e-06  Score=71.94  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..+..+.        ++.       +..+|+..|+...
T Consensus        57 ~g~~VLDlGcGtG~~~~~la--------~~~-------~~~~V~gvD~s~~   92 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLA--------DIV-------DEGIIYAVEYSAK   92 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHH--------HHT-------TTSEEEEECCCHH
T ss_pred             CCCEEEEECCcCCHHHHHHH--------HHc-------CCCEEEEEECCHH
Confidence            45799999999999888776        443       2368999997654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.29  E-value=2e-06  Score=74.49  Aligned_cols=56  Identities=11%  Similarity=-0.030  Sum_probs=39.2

Q ss_pred             CCCccCC-CCCC---CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 024331          136 PGSFYGR-LFPR---NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE  211 (269)
Q Consensus       136 pgSFy~~-lfP~---~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG  211 (269)
                      .+++... ++++   +++|+++++.+||++..-                             ..+...+|+.=.+-|+||
T Consensus       141 ~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~~~Lkpg  191 (265)
T 2i62_A          141 KCDVTQSQPLGGVSLPPADCLLSTLCLDAACPD-----------------------------LPAYRTALRNLGSLLKPG  191 (265)
T ss_dssp             ECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS-----------------------------HHHHHHHHHHHHTTEEEE
T ss_pred             EeeeccCCCCCccccCCccEEEEhhhhhhhcCC-----------------------------hHHHHHHHHHHHhhCCCC
Confidence            3666664 3466   899999999999975320                             124445555557789999


Q ss_pred             CeEEEEecc
Q 024331          212 GRMVLTFLG  220 (269)
Q Consensus       212 G~lv~~~~g  220 (269)
                      |+|+++...
T Consensus       192 G~li~~~~~  200 (265)
T 2i62_A          192 GFLVMVDAL  200 (265)
T ss_dssp             EEEEEEEES
T ss_pred             cEEEEEecC
Confidence            999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.29  E-value=2.9e-06  Score=72.09  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=51.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc-
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ-  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~-  129 (269)
                      .-+|+|+|||+|..++.++        ++.       |..+|+..|+...=       +........ +.+.     .+ 
T Consensus        42 ~~~vLDiGcG~G~~~~~la--------~~~-------p~~~v~gvD~s~~~-------l~~a~~~~~-~~~~-----~~v   93 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMA--------KQN-------PDINYIGIDIQKSV-------LSYALDKVL-EVGV-----PNI   93 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHH--------HHC-------TTSEEEEEESCHHH-------HHHHHHHHH-HHCC-----SSE
T ss_pred             CCeEEEEccCcCHHHHHHH--------HHC-------CCCCEEEEEcCHHH-------HHHHHHHHH-HcCC-----CCE
Confidence            5689999999999988776        442       57899999986540       111111111 1121     12 


Q ss_pred             eEEeecCCCccCCC--CCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWL  161 (269)
                      .++.   ++.....  ||++++|++++++..+|.
T Consensus        94 ~~~~---~d~~~~~~~~~~~~~D~i~~~~~~~~~  124 (214)
T 1yzh_A           94 KLLW---VDGSDLTDYFEDGEIDRLYLNFSDPWP  124 (214)
T ss_dssp             EEEE---CCSSCGGGTSCTTCCSEEEEESCCCCC
T ss_pred             EEEe---CCHHHHHhhcCCCCCCEEEEECCCCcc
Confidence            2333   5665533  889999999998776663

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.29  E-value=2.4e-06  Score=69.48  Aligned_cols=79  Identities=9%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..++.++        ++       .|..+|+..|+...          +. +..+++. ..+.  ..
T Consensus        25 ~~~~vldiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~~~~----------~~-~~a~~~~~~~~~--~~   76 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWL--------RS-------TPQTTAVCFEISEE----------RR-ERILSNAINLGV--SD   76 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHH--------TT-------SSSEEEEEECSCHH----------HH-HHHHHHHHTTTC--TT
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------HH-------CCCCeEEEEeCCHH----------HH-HHHHHHHHHhCC--CC
Confidence            45799999999999888776        33       25689999998654          11 1122111 1111  12


Q ss_pred             ceEEeecCCCccCCCCCC--CceeeEeccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPR--NSVHLFHSSYSLQW  160 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~--~Svd~~~Ss~alHW  160 (269)
                      ++++.   ++... .+|.  +++|+++++.++||
T Consensus        77 ~~~~~---~d~~~-~~~~~~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           77 RIAVQ---QGAPR-AFDDVPDNPDVIFIGGGLTA  106 (178)
T ss_dssp             SEEEE---CCTTG-GGGGCCSCCSEEEECC-TTC
T ss_pred             CEEEe---cchHh-hhhccCCCCCEEEECCcccH
Confidence            45444   55443 5555  89999999888877

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.27  E-value=2.1e-06  Score=77.03  Aligned_cols=100  Identities=9%  Similarity=-0.015  Sum_probs=64.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ++         ..+|+..|+..+          ++ +.++++...      .
T Consensus        45 ~g~~VLDlGcGtG~~a~~La--------~~---------g~~V~gvD~S~~----------ml-~~Ar~~~~~------~   90 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKAL--------ER---------GASVTVFDFSQR----------MC-DDLAEALAD------R   90 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHHHTSS------S
T ss_pred             CcCEEEEEeCcchHHHHHHH--------hc---------CCEEEEEECCHH----------HH-HHHHHHHHh------c
Confidence            45799999999999988777        43         258999997765          32 223333211      1


Q ss_pred             eEEeecCCCccCCCC-----CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          130 CFFTGVPGSFYGRLF-----PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf-----P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                       +   +.+++....+     +++++|+++|+.++||+..                               .+...+|+.=
T Consensus        91 -~---v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~-------------------------------~~~~~~l~~l  135 (261)
T 3iv6_A           91 -C---VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTT-------------------------------EEARRACLGM  135 (261)
T ss_dssp             -C---CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCH-------------------------------HHHHHHHHHH
T ss_pred             -c---ceeeeeecccccccccCCCccEEEEhhhhHhCCH-------------------------------HHHHHHHHHH
Confidence             1   2233333222     3679999999999998521                               2333334443


Q ss_pred             hhhhccCCeEEEEec
Q 024331          205 SEELVAEGRMVLTFL  219 (269)
Q Consensus       205 a~EL~pGG~lv~~~~  219 (269)
                      ++-| |||++++++.
T Consensus       136 ~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          136 LSLV-GSGTVRASVK  149 (261)
T ss_dssp             HHHH-TTSEEEEEEE
T ss_pred             HHhC-cCcEEEEEec
Confidence            5567 9999999874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.27  E-value=6.4e-06  Score=77.51  Aligned_cols=108  Identities=18%  Similarity=0.091  Sum_probs=69.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.+.        ++         ..+|+..|....       .+......+. ..+  .   .-
T Consensus       233 ~~~~VLDlGcG~G~~~~~la--------~~---------g~~V~gvDis~~-------al~~A~~n~~-~~~--~---~v  282 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLA--------RM---------GAEVVGVEDDLA-------SVLSLQKGLE-ANA--L---KA  282 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHH--------HT---------TCEEEEEESBHH-------HHHHHHHHHH-HTT--C---CC
T ss_pred             CCCEEEEEeeeCCHHHHHHH--------Hc---------CCEEEEEECCHH-------HHHHHHHHHH-HcC--C---Ce
Confidence            45799999999999998877        32         258999987443       1111111111 111  1   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      -|+.   +++...+++++++|+++|+..+||-.....                            .+...|++.=.+-|+
T Consensus       283 ~~~~---~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~----------------------------~~~~~~l~~~~~~Lk  331 (381)
T 3dmg_A          283 QALH---SDVDEALTEEARFDIIVTNPPFHVGGAVIL----------------------------DVAQAFVNVAAARLR  331 (381)
T ss_dssp             EEEE---CSTTTTSCTTCCEEEEEECCCCCTTCSSCC----------------------------HHHHHHHHHHHHHEE
T ss_pred             EEEE---cchhhccccCCCeEEEEECCchhhcccccH----------------------------HHHHHHHHHHHHhcC
Confidence            3333   788888888899999999999988332211                            233445555556677


Q ss_pred             cCCeEEEEe
Q 024331          210 AEGRMVLTF  218 (269)
Q Consensus       210 pGG~lv~~~  218 (269)
                      |||+++++.
T Consensus       332 pGG~l~iv~  340 (381)
T 3dmg_A          332 PGGVFFLVS  340 (381)
T ss_dssp             EEEEEEEEE
T ss_pred             cCcEEEEEE
Confidence            999999975

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.26  E-value=2.3e-06  Score=71.91  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      .+.+|+|+|||+|..+..+.        ++         ..+|+..|+...          + .+..+++ +      ..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~-~~~a~~~-~------~~   96 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALA--------DR---------GIEAVGVDGDRT----------L-VDAARAA-G------AG   96 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCHH----------H-HHHHHHT-C------SS
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HC---------CCEEEEEcCCHH----------H-HHHHHHh-c------cc
Confidence            35899999999998887665        22         358899987643          2 1223322 1      12


Q ss_pred             eEEeecCCCccCC---CCCC-CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYGR---LFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~~---lfP~-~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      .+..   +++...   .++. +++|+++++.++|+    +.               +.               .+|+.=.
T Consensus        97 ~~~~---~~~~~~~~~~~~~~~~fD~v~~~~~l~~----~~---------------~~---------------~~l~~~~  139 (227)
T 3e8s_A           97 EVHL---ASYAQLAEAKVPVGKDYDLICANFALLH----QD---------------II---------------ELLSAMR  139 (227)
T ss_dssp             CEEE---CCHHHHHTTCSCCCCCEEEEEEESCCCS----SC---------------CH---------------HHHHHHH
T ss_pred             ccch---hhHHhhcccccccCCCccEEEECchhhh----hh---------------HH---------------HHHHHHH
Confidence            3444   333332   4444 45999999999992    11               11               1222235


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+++++.+...
T Consensus       140 ~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          140 TLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             HTEEEEEEEEEEECCTT
T ss_pred             HHhCCCeEEEEEecCcc
Confidence            67889999999988664

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.26  E-value=3e-06  Score=80.88  Aligned_cols=129  Identities=12%  Similarity=0.061  Sum_probs=82.5

Q ss_pred             CCceEEEeecCC------CCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC
Q 024331           49 PTKVAIADLGCS------SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS  122 (269)
Q Consensus        49 ~~~~~IaD~GCs------~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~  122 (269)
                      .++.+|+|+|||      +|..|+.++        +++      .|..+|+..|+..+          +.      ....
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la--------~~~------fP~a~V~GVDiSp~----------m~------~~~~  264 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMW--------KSF------FPRGQIYGLDIMDK----------SH------VDEL  264 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHH--------HHH------CTTCEEEEEESSCC----------GG------GCBT
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHH--------HHh------CCCCEEEEEECCHH----------Hh------hcCC
Confidence            357899999999      888888776        443      15689999999887          11      0111


Q ss_pred             CCCCCCceEEeecCCCccCCCCC------CCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHH
Q 024331          123 ASGAAGQCFFTGVPGSFYGRLFP------RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRD  196 (269)
Q Consensus       123 ~~~~~~~~f~~~vpgSFy~~lfP------~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D  196 (269)
                           +-.|+.   |+.....|+      ++++|+++|..+ |+.                                 .|
T Consensus       265 -----rI~fv~---GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~---------------------------------~d  302 (419)
T 3sso_A          265 -----RIRTIQ---GDQNDAEFLDRIARRYGPFDIVIDDGS-HIN---------------------------------AH  302 (419)
T ss_dssp             -----TEEEEE---CCTTCHHHHHHHHHHHCCEEEEEECSC-CCH---------------------------------HH
T ss_pred             -----CcEEEE---ecccccchhhhhhcccCCccEEEECCc-ccc---------------------------------hh
Confidence                 123444   788887777      799999999654 441                                 12


Q ss_pred             HHHHHhhhhhhhccCCeEEEEecccCC----CCCCC--hhhhHHHHHHHHHHHHHHHcc
Q 024331          197 FSLFLKCRSEELVAEGRMVLTFLGRKS----QDPSS--KECCYIWELLATALNNMVSEV  249 (269)
Q Consensus       197 ~~~FL~~Ra~EL~pGG~lv~~~~g~~~----~~~~~--~~~~~~~~~l~~~l~~mv~eG  249 (269)
                      +.++|+.=.+-|||||++++.-+-..-    ++...  .....+.+.++..+..+-.+-
T Consensus       303 ~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~  361 (419)
T 3sso_A          303 VRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQE  361 (419)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccc
Confidence            233444446788999999998665221    11110  112345677777777776553

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.26  E-value=1e-06  Score=76.00  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||+|.++..++        +..       +  +|+..|+...          +. +..+++....    +
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la--------~~~-------~--~v~gvD~s~~----------~~-~~a~~~~~~~----~  102 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLS--------QFF-------P--RVIGLDVSKS----------AL-EIAAKENTAA----N  102 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHH--------HHS-------S--CEEEEESCHH----------HH-HHHHHHSCCT----T
T ss_pred             CCCCeEEEEcCCCCHHHHHHH--------HhC-------C--CEEEEECCHH----------HH-HHHHHhCccc----C
Confidence            345789999999999998877        442       2  7888887543          21 2222222110    1


Q ss_pred             ceEEeecCCCccCCCCCC-----CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024331          129 QCFFTGVPGSFYGRLFPR-----NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC  203 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~-----~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~  203 (269)
                      -.|+.   +++....++.     .++|+++++.++||++.                               .|...+|+.
T Consensus       103 ~~~~~---~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~-------------------------------~~~~~~l~~  148 (245)
T 3ggd_A          103 ISYRL---LDGLVPEQAAQIHSEIGDANIYMRTGFHHIPV-------------------------------EKRELLGQS  148 (245)
T ss_dssp             EEEEE---CCTTCHHHHHHHHHHHCSCEEEEESSSTTSCG-------------------------------GGHHHHHHH
T ss_pred             ceEEE---CcccccccccccccccCccEEEEcchhhcCCH-------------------------------HHHHHHHHH
Confidence            23433   6666644332     34899999999999632                               011222332


Q ss_pred             hhhhhccCCeEEEEecccC
Q 024331          204 RSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~~g~~  222 (269)
                      =.+-|+|||++++..++..
T Consensus       149 ~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          149 LRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             HHHHHTTTCEEEEEEECTT
T ss_pred             HHHHcCCCCEEEEEeCCcc
Confidence            3566779999999887654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.26  E-value=3.6e-06  Score=77.83  Aligned_cols=109  Identities=15%  Similarity=0.217  Sum_probs=73.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|..++.++        +++       |.++++.-|+|.-        +..    .++.....    ..
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~--------~~~-------p~~~~~~~dlp~v--------~~~----a~~~~~~~----~~  227 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECM--------SLY-------PGCKITVFDIPEV--------VWT----AKQHFSFQ----EE  227 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHH--------HHC-------SSCEEEEEECHHH--------HHH----HHHHSCC------C
T ss_pred             cCCeEEeeCCCCCHHHHHHH--------HhC-------CCceeEeccCHHH--------HHH----HHHhhhhc----cc
Confidence            44699999999999888777        765       7889999998753        222    22221110    01


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.+..++|+|+..++|.  .|+++....|| | ++                               .+..++|+.=++-|
T Consensus       228 ~rv~~~~gD~~~~~~~~--~D~~~~~~vlh~~-~d-------------------------------~~~~~iL~~~~~al  273 (353)
T 4a6d_A          228 EQIDFQEGDFFKDPLPE--ADLYILARVLHDW-AD-------------------------------GKCSHLLERIYHTC  273 (353)
T ss_dssp             CSEEEEESCTTTSCCCC--CSEEEEESSGGGS-CH-------------------------------HHHHHHHHHHHHHC
T ss_pred             CceeeecCccccCCCCC--ceEEEeeeecccC-CH-------------------------------HHHHHHHHHHHhhC
Confidence            12444679999887765  59999999999 5 11                               22334455446678


Q ss_pred             ccCCeEEEEecccCC
Q 024331          209 VAEGRMVLTFLGRKS  223 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~  223 (269)
                      +|||++++.-...++
T Consensus       274 ~pgg~lli~e~~~~~  288 (353)
T 4a6d_A          274 KPGGGILVIESLLDE  288 (353)
T ss_dssp             CTTCEEEEEECCCCT
T ss_pred             CCCCEEEEEEeeeCC
Confidence            899999998776654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.26  E-value=3.6e-06  Score=68.92  Aligned_cols=104  Identities=19%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +.         ..+++..|....          . .+..+++. .     +-
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~~D~~~~----------~-~~~a~~~~-~-----~~   91 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLS--------KQ---------GHDVLGTDLDPI----------L-IDYAKQDF-P-----EA   91 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHH--------HT---------TCEEEEEESCHH----------H-HHHHHHHC-T-----TS
T ss_pred             CCCeEEEECCCCCHHHHHHH--------HC---------CCcEEEEcCCHH----------H-HHHHHHhC-C-----CC
Confidence            46799999999999887666        32         257888886543          1 11122221 1     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecc-ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSS-YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss-~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .++.   +++....+|++++|+++++ ..+|+++.                               .+...+|+.=.+-|
T Consensus        92 ~~~~---~d~~~~~~~~~~~D~i~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~l  137 (195)
T 3cgg_A           92 RWVV---GDLSVDQISETDFDLIVSAGNVMGFLAE-------------------------------DGREPALANIHRAL  137 (195)
T ss_dssp             EEEE---CCTTTSCCCCCCEEEEEECCCCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             cEEE---cccccCCCCCCceeEEEECCcHHhhcCh-------------------------------HHHHHHHHHHHHHh
Confidence            3333   6777777889999999997 66776421                               12344455446677


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||++++.....
T Consensus       138 ~~~G~l~~~~~~~  150 (195)
T 3cgg_A          138 GADGRAVIGFGAG  150 (195)
T ss_dssp             EEEEEEEEEEETT
T ss_pred             CCCCEEEEEeCCC
Confidence            8999999987544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.23  E-value=2.6e-06  Score=78.30  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..++.++        +++       |..+++..|+ .. .      +....+.... .+..    .
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------~~~~~~~~D~-~~-~------~~~a~~~~~~-~~~~----~  232 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIA--------LRA-------PHLRGTLVEL-AG-P------AERARRRFAD-AGLA----D  232 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEEC-HH-H------HHHHHHHHHH-TTCT----T
T ss_pred             CCCCEEEEECCCcCHHHHHHH--------HHC-------CCCEEEEEeC-HH-H------HHHHHHHHHh-cCCC----C
Confidence            346899999999998877766        543       5689999998 32 1      2221111211 1110    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +  +..+.++|.. .+|.+ +|++++...+|+.++                               .+...+|+.=.+-|
T Consensus       233 ~--v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~-------------------------------~~~~~~l~~~~~~L  277 (374)
T 1qzz_A          233 R--VTVAEGDFFK-PLPVT-ADVVLLSFVLLNWSD-------------------------------EDALTILRGCVRAL  277 (374)
T ss_dssp             T--EEEEECCTTS-CCSCC-EEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             c--eEEEeCCCCC-cCCCC-CCEEEEeccccCCCH-------------------------------HHHHHHHHHHHHhc
Confidence            2  2224488876 56765 999999999986321                               11223333335677


Q ss_pred             ccCCeEEEEec
Q 024331          209 VAEGRMVLTFL  219 (269)
Q Consensus       209 ~pGG~lv~~~~  219 (269)
                      +|||++++...
T Consensus       278 ~pgG~l~i~e~  288 (374)
T 1qzz_A          278 EPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCcEEEEEec
Confidence            89999999877

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.23  E-value=5e-06  Score=71.00  Aligned_cols=105  Identities=23%  Similarity=0.324  Sum_probs=65.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..++        +        .  .+|+..|+...       .+....+.... .+.     .-.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~--------~--------~--~~v~~vD~s~~-------~~~~a~~~~~~-~~~-----~~~   82 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLA--------D--------H--YEVTGVDLSEE-------MLEIAQEKAME-TNR-----HVD   82 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHT--------T--------T--SEEEEEESCHH-------HHHHHHHHHHH-TTC-----CCE
T ss_pred             CCeEEEecCCCCHHHHHHh--------h--------C--CeEEEEECCHH-------HHHHHHHhhhh-cCC-----ceE
Confidence            4799999999999877655        1        1  57888887554       01111111111 111     113


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccc-cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~-alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      ++.   +++....+| +++|++++.. ++||+..                              ..+...+|+.=++-|+
T Consensus        83 ~~~---~d~~~~~~~-~~fD~v~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~L~  128 (243)
T 3d2l_A           83 FWV---QDMRELELP-EPVDAITILCDSLNYLQT------------------------------EADVKQTFDSAARLLT  128 (243)
T ss_dssp             EEE---CCGGGCCCS-SCEEEEEECTTGGGGCCS------------------------------HHHHHHHHHHHHHHEE
T ss_pred             EEE---cChhhcCCC-CCcCEEEEeCCchhhcCC------------------------------HHHHHHHHHHHHHhcC
Confidence            333   677776666 8999999987 8888521                              0234445554467788


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||++++.+..
T Consensus       129 pgG~l~~~~~~  139 (243)
T 3d2l_A          129 DGGKLLFDVHS  139 (243)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCeEEEEEcCC
Confidence            99999997643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.22  E-value=5.9e-06  Score=70.30  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..+.+.                     +..|....          + .+..+++   +.     .
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~---------------------~~vD~s~~----------~-~~~a~~~---~~-----~   87 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK---------------------IGVEPSER----------M-AEIARKR---GV-----F   87 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC---------------------EEEESCHH----------H-HHHHHHT---TC-----E
T ss_pred             CCcEEEeCCCCCHHHHHHHHH---------------------hccCCCHH----------H-HHHHHhc---CC-----E
Confidence            579999999999998765411                     44554332          1 1112221   11     2


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      ++.   +++....++++++|++++..++|++.+                  +.               .+|+.=.+-|+|
T Consensus        88 ~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~~------------------~~---------------~~l~~~~~~L~p  131 (219)
T 1vlm_A           88 VLK---GTAENLPLKDESFDFALMVTTICFVDD------------------PE---------------RALKEAYRILKK  131 (219)
T ss_dssp             EEE---CBTTBCCSCTTCEEEEEEESCGGGSSC------------------HH---------------HHHHHHHHHEEE
T ss_pred             EEE---cccccCCCCCCCeeEEEEcchHhhccC------------------HH---------------HHHHHHHHHcCC
Confidence            333   677777789999999999999999632                  11               122222456779


Q ss_pred             CCeEEEEeccc
Q 024331          211 EGRMVLTFLGR  221 (269)
Q Consensus       211 GG~lv~~~~g~  221 (269)
                      ||.++++.+..
T Consensus       132 gG~l~i~~~~~  142 (219)
T 1vlm_A          132 GGYLIVGIVDR  142 (219)
T ss_dssp             EEEEEEEEECS
T ss_pred             CcEEEEEEeCC
Confidence            99999998754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.20  E-value=3e-06  Score=71.33  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..+.        ++        + .+++..|....          + .+..++.    .    .
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~--------~~--------~-~~~~~~D~~~~----------~-~~~~~~~----~----~   75 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIK--------EN--------G-TRVSGIEAFPE----------A-AEQAKEK----L----D   75 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------TT--------T-CEEEEEESSHH----------H-HHHHHTT----S----S
T ss_pred             CCCcEEEeCCCCCHHHHHHH--------hc--------C-CeEEEEeCCHH----------H-HHHHHHh----C----C
Confidence            56899999999999887665        21        3 68888887543          1 1112211    1    1


Q ss_pred             eEEeecCCCccC--CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 CFFTGVPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 ~f~~~vpgSFy~--~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      -++.   +++..  ..+|++++|+++++.++|++..                  +               ..+|+.=.+-
T Consensus        76 ~~~~---~d~~~~~~~~~~~~fD~v~~~~~l~~~~~------------------~---------------~~~l~~~~~~  119 (230)
T 3cc8_A           76 HVVL---GDIETMDMPYEEEQFDCVIFGDVLEHLFD------------------P---------------WAVIEKVKPY  119 (230)
T ss_dssp             EEEE---SCTTTCCCCSCTTCEEEEEEESCGGGSSC------------------H---------------HHHHHHTGGG
T ss_pred             cEEE---cchhhcCCCCCCCccCEEEECChhhhcCC------------------H---------------HHHHHHHHHH
Confidence            2333   56654  6788899999999999998632                  1               1334444677


Q ss_pred             hccCCeEEEEecc
Q 024331          208 LVAEGRMVLTFLG  220 (269)
Q Consensus       208 L~pGG~lv~~~~g  220 (269)
                      |+|||.++++.+.
T Consensus       120 L~~gG~l~~~~~~  132 (230)
T 3cc8_A          120 IKQNGVILASIPN  132 (230)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             cCCCCEEEEEeCC
Confidence            8999999999765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.20  E-value=5.6e-06  Score=68.83  Aligned_cols=110  Identities=17%  Similarity=0.090  Sum_probs=66.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ++        +..+|+..|+...       .+....+.+.. .+..    .-
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~--------~~--------~~~~v~~vD~~~~-------~~~~a~~~~~~-~~~~----~v   95 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEAL--------SR--------GAASVLFVESDQR-------SAAVIARNIEA-LGLS----GA   95 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEECCHH-------HHHHHHHHHHH-HTCS----CE
T ss_pred             CCCEEEEeCCCcCHHHHHHH--------HC--------CCCeEEEEECCHH-------HHHHHHHHHHH-cCCC----ce
Confidence            45799999999999888665        22        2357999998654       11111111111 1210    11


Q ss_pred             eEEeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh-
Q 024331          130 CFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE-  206 (269)
Q Consensus       130 ~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~-  206 (269)
                      .++.   +++...+  ++++++|++++...+||.                                ..++..+|+.-.+ 
T Consensus        96 ~~~~---~d~~~~~~~~~~~~fD~i~~~~p~~~~--------------------------------~~~~~~~l~~~~~~  140 (189)
T 3p9n_A           96 TLRR---GAVAAVVAAGTTSPVDLVLADPPYNVD--------------------------------SADVDAILAALGTN  140 (189)
T ss_dssp             EEEE---SCHHHHHHHCCSSCCSEEEECCCTTSC--------------------------------HHHHHHHHHHHHHS
T ss_pred             EEEE---ccHHHHHhhccCCCccEEEECCCCCcc--------------------------------hhhHHHHHHHHHhc
Confidence            3433   6766543  468899999996555551                                0233333433333 


Q ss_pred             -hhccCCeEEEEecccC
Q 024331          207 -ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 -EL~pGG~lv~~~~g~~  222 (269)
                       -|+|||++++....+.
T Consensus       141 ~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          141 GWTREGTVAVVERATTC  157 (189)
T ss_dssp             SSCCTTCEEEEEEETTS
T ss_pred             CccCCCeEEEEEecCCC
Confidence             8999999999887654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.19  E-value=8.6e-06  Score=67.11  Aligned_cols=116  Identities=14%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..|+.++        ++         ..+|+..|+...       .+....+... +.+.     .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la--------~~---------~~~v~~vD~s~~-------~l~~a~~~~~-~~~~-----~   70 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLA--------GL---------SKKVYAFDVQEQ-------ALGKTSQRLS-DLGI-----E   70 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHH--------TT---------SSEEEEEESCHH-------HHHHHHHHHH-HHTC-----C
T ss_pred             CCCCEEEEEcCCCCHHHHHHH--------Hh---------CCEEEEEECCHH-------HHHHHHHHHH-HcCC-----C
Confidence            346799999999999998777        32         378999997654       0111111111 1121     1


Q ss_pred             c-eEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 Q-CFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      + .|+.   +++.... ++++++|+++++  ++|+......+.           ..           ..+...+|+.=.+
T Consensus        71 ~v~~~~---~~~~~l~~~~~~~fD~v~~~--~~~~~~~~~~~~-----------~~-----------~~~~~~~l~~~~~  123 (185)
T 3mti_A           71 NTELIL---DGHENLDHYVREPIRAAIFN--LGYLPSADKSVI-----------TK-----------PHTTLEAIEKILD  123 (185)
T ss_dssp             CEEEEE---SCGGGGGGTCCSCEEEEEEE--EC----------------------C-----------HHHHHHHHHHHHH
T ss_pred             cEEEEe---CcHHHHHhhccCCcCEEEEe--CCCCCCcchhcc-----------cC-----------hhhHHHHHHHHHH
Confidence            2 2333   5554422 568899999875  344432111110           01           1222334444456


Q ss_pred             hhccCCeEEEEeccc
Q 024331          207 ELVAEGRMVLTFLGR  221 (269)
Q Consensus       207 EL~pGG~lv~~~~g~  221 (269)
                      -|+|||++++.....
T Consensus       124 ~LkpgG~l~i~~~~~  138 (185)
T 3mti_A          124 RLEVGGRLAIMIYYG  138 (185)
T ss_dssp             HEEEEEEEEEEEC--
T ss_pred             hcCCCcEEEEEEeCC
Confidence            788999999987643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.18  E-value=4.3e-07  Score=85.10  Aligned_cols=104  Identities=12%  Similarity=0.091  Sum_probs=66.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        ++         ..+|+..|+..+          +. +..+++ +...  ...
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~--------~~---------g~~v~gvD~s~~----------~~-~~a~~~-~~~~--~~~  155 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQ--------EA---------GVRHLGFEPSSG----------VA-AKAREK-GIRV--RTD  155 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHH--------HT---------TCEEEEECCCHH----------HH-HHHHTT-TCCE--ECS
T ss_pred             CCCEEEEecCCCCHHHHHHH--------Hc---------CCcEEEECCCHH----------HH-HHHHHc-CCCc--cee
Confidence            46799999999999877665        32         258999998665          22 112221 2110  001


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|.   .++.....++++++|+++|+.++||+.+                                 ...||+.=++-|+
T Consensus       156 ~~~---~~~~~~l~~~~~~fD~I~~~~vl~h~~d---------------------------------~~~~l~~~~r~Lk  199 (416)
T 4e2x_A          156 FFE---KATADDVRRTEGPANVIYAANTLCHIPY---------------------------------VQSVLEGVDALLA  199 (416)
T ss_dssp             CCS---HHHHHHHHHHHCCEEEEEEESCGGGCTT---------------------------------HHHHHHHHHHHEE
T ss_pred             eec---hhhHhhcccCCCCEEEEEECChHHhcCC---------------------------------HHHHHHHHHHHcC
Confidence            111   1333344578899999999999999632                                 2233333356777


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||+|++....
T Consensus       200 pgG~l~i~~~~  210 (416)
T 4e2x_A          200 PDGVFVFEDPY  210 (416)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCeEEEEEeCC
Confidence            99999998764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.18  E-value=4.7e-06  Score=76.28  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..++        +++       |.++++..|+| . .      +....+.... .+..    .+
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~--------~~~-------~~~~~~~~D~~-~-~------~~~a~~~~~~-~~~~----~~  234 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIA--------RRA-------PHVSATVLEMA-G-T------VDTARSYLKD-EGLS----DR  234 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECT-T-H------HHHHHHHHHH-TTCT----TT
T ss_pred             cCcEEEEeCCcCcHHHHHHH--------HhC-------CCCEEEEecCH-H-H------HHHHHHHHHh-cCCC----Cc
Confidence            46799999999999888776        543       56899999993 3 2      2221111211 1110    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +  .-+.+++.. .+|.+ +|+++++..+|..+.                               .+...+|+.=.+-|+
T Consensus       235 v--~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~-------------------------------~~~~~~l~~~~~~L~  279 (360)
T 1tw3_A          235 V--DVVEGDFFE-PLPRK-ADAIILSFVLLNWPD-------------------------------HDAVRILTRCAEALE  279 (360)
T ss_dssp             E--EEEECCTTS-CCSSC-EEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTEE
T ss_pred             e--EEEeCCCCC-CCCCC-ccEEEEcccccCCCH-------------------------------HHHHHHHHHHHHhcC
Confidence            2  223478876 56765 999999999975311                               122233443356788


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||++++....
T Consensus       280 pgG~l~i~e~~  290 (360)
T 1tw3_A          280 PGGRILIHERD  290 (360)
T ss_dssp             EEEEEEEEECC
T ss_pred             CCcEEEEEEEe
Confidence            99999998776

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.17  E-value=5.7e-06  Score=72.05  Aligned_cols=149  Identities=8%  Similarity=-0.040  Sum_probs=77.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|.++..+.        +.       .| -+|+..|+...          + .+.+++.. ..+    .
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~--------~~-------~~-~~v~~id~~~~----------~-~~~a~~~~~~~~----~  108 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQ--------EA-------PI-DEHWIIECNDG----------V-FQRLRDWAPRQT----H  108 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHT--------TS-------CE-EEEEEEECCHH----------H-HHHHHHHGGGCS----S
T ss_pred             CCCeEEEECCCccHHHHHHH--------Hh-------CC-cEEEEEeCCHH----------H-HHHHHHHHhhCC----C
Confidence            46899999999998877655        32       23 46778887543          1 12232221 111    1


Q ss_pred             ceEEeecCCCcc--CCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 QCFFTGVPGSFY--GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~~f~~~vpgSFy--~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      ++.+.  -|+..  ...+|++++|.++.-.....       .                     ......|...||+.=+|
T Consensus       109 ~~~~~--~~~a~~~~~~~~~~~FD~i~~D~~~~~-------~---------------------~~~~~~~~~~~~~e~~r  158 (236)
T 3orh_A          109 KVIPL--KGLWEDVAPTLPDGHFDGILYDTYPLS-------E---------------------ETWHTHQFNFIKNHAFR  158 (236)
T ss_dssp             EEEEE--ESCHHHHGGGSCTTCEEEEEECCCCCB-------G---------------------GGTTTHHHHHHHHTHHH
T ss_pred             ceEEE--eehHHhhcccccccCCceEEEeeeecc-------c---------------------chhhhcchhhhhhhhhh
Confidence            22222  24443  34589999999964111000       0                     00012456667776688


Q ss_pred             hhccCCeEEEEecccCC---CCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccc
Q 024331          207 ELVAEGRMVLTFLGRKS---QDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLN  263 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~---~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~  263 (269)
                      .|||||+|++.......   ...+.. ...+  ..+.....|.+.|+-. +.++.-.++.
T Consensus       159 vLkPGG~l~f~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~L~eaGF~~-~~i~~~~~~l  214 (236)
T 3orh_A          159 LLKPGGVLTYCNLTSWGELMKSKYSD-ITIM--FEETQVPALLEAGFRR-ENIRTEVMAL  214 (236)
T ss_dssp             HEEEEEEEEECCHHHHHHHTTTTCSC-HHHH--HHHHTHHHHHHHTCCG-GGEEEEEEEC
T ss_pred             eeCCCCEEEEEecCCchhhhhhhhhh-hhhh--hHHHHHHHHHHcCCeE-EEEEEEeecc
Confidence            99999999875432211   111111 1111  2344556777788632 3334434433

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.16  E-value=6e-06  Score=75.77  Aligned_cols=103  Identities=19%  Similarity=0.319  Sum_probs=67.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..++        +++       |..+++..|+|.-        +..    .+     ..   ++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~~--------~~~----a~-----~~---~~  232 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIIC--------ETF-------PKLKCIVFDRPQV--------VEN----LS-----GS---NN  232 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HTT----CC-----CB---TT
T ss_pred             cCceEEEeCCCccHHHHHHH--------HHC-------CCCeEEEeeCHHH--------Hhh----cc-----cC---CC
Confidence            45799999999998887776        553       5688999998321        110    00     01   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.++|+. .+|+  +|+++++..||.+++                               .+...+|+.=++-|+
T Consensus       233 --v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d-------------------------------~~~~~~l~~~~~~L~  276 (352)
T 1fp2_A          233 --LTYVGGDMFT-SIPN--ADAVLLKYILHNWTD-------------------------------KDCLRILKKCKEAVT  276 (352)
T ss_dssp             --EEEEECCTTT-CCCC--CSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHHS
T ss_pred             --cEEEeccccC-CCCC--ccEEEeehhhccCCH-------------------------------HHHHHHHHHHHHhCC
Confidence              3335589987 6774  999999999995321                               112233333356677


Q ss_pred             c---CCeEEEEecccCC
Q 024331          210 A---EGRMVLTFLGRKS  223 (269)
Q Consensus       210 p---GG~lv~~~~g~~~  223 (269)
                      |   ||++++..+..++
T Consensus       277 p~~~gG~l~i~e~~~~~  293 (352)
T 1fp2_A          277 NDGKRGKVTIIDMVIDK  293 (352)
T ss_dssp             GGGCCCEEEEEECEECT
T ss_pred             CCCCCcEEEEEEeecCC
Confidence            9   9999998876654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.16  E-value=1.1e-06  Score=76.11  Aligned_cols=142  Identities=13%  Similarity=0.050  Sum_probs=85.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +.+-+|+|+|||+|+.++.++        .       ..|.+++...|....        +-.+........|..    .
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~--------~-------~~p~a~~~A~Di~~~--------~leiar~~~~~~g~~----~  100 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQW--------N-------ENEKIIYHAYDIDRA--------EIAFLSSIIGKLKTT----I  100 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHH--------C-------SSCCCEEEEECSCHH--------HHHHHHHHHHHSCCS----S
T ss_pred             CCCCeEEEecCCCCHHHHHHH--------h-------cCCCCEEEEEeCCHH--------HHHHHHHHHHhcCCC----c
Confidence            457899999999999999877        2       347889999998664        111111111122221    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      ++-+    .++-.. .|+.++|++.++..||-|.+.+..+.                  ..               .+.|
T Consensus       101 ~v~~----~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~------------------~v---------------~~~L  142 (200)
T 3fzg_A          101 KYRF----LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNIL------------------DF---------------LQLF  142 (200)
T ss_dssp             EEEE----ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHH------------------HH---------------HHTC
T ss_pred             cEEE----eccccc-CCCCCcChhhHhhHHHhhhhhHHHHH------------------HH---------------HHHh
Confidence            3333    333333 68899999999999999955443321                  22               5678


Q ss_pred             ccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccc
Q 024331          209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLN  263 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~  263 (269)
                      +|||+ ++++..+.=.++.-+    +.+.=...|...+.+..   +.++.+.++.
T Consensus       143 ~pggv-fISfptksl~Gr~~g----m~~~Y~~~~~~~~~~~~---~~~~~~~~~n  189 (200)
T 3fzg_A          143 HTQNF-VISFPIKSLSGKEKG----MEENYQLWFESFTKGWI---KILDSKVIGN  189 (200)
T ss_dssp             EEEEE-EEEEECCCCC--CTT----CCCCHHHHHHHHTTTTS---CEEEEEEETT
T ss_pred             CCCCE-EEEeChHHhcCCCcc----hhhhHHHHHHHhccCcc---eeeeeeeeCc
Confidence            89865 567774443333221    11223445666666766   6777777664

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.15  E-value=1.3e-05  Score=73.78  Aligned_cols=105  Identities=19%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +.        +..+|+..|.. . .      +....+... ..+..    .+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la--------~~--------g~~~v~gvD~s-~-~------~~~a~~~~~-~~~~~----~~  114 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAA--------KA--------GAKKVLGVDQS-E-I------LYQAMDIIR-LNKLE----DT  114 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEESS-T-H------HHHHHHHHH-HTTCT----TT
T ss_pred             CCCEEEEeeccCcHHHHHHH--------Hc--------CCCEEEEEChH-H-H------HHHHHHHHH-HcCCC----Cc
Confidence            45799999999998877665        32        23589999975 3 2      111111122 12211    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +-  .+.+++....+|++++|+++|....+-+.                              ...++..+|+.+.+-|+
T Consensus       115 i~--~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~------------------------------~~~~~~~~l~~~~~~Lk  162 (340)
T 2fyt_A          115 IT--LIKGKIEEVHLPVEKVDVIISEWMGYFLL------------------------------FESMLDSVLYAKNKYLA  162 (340)
T ss_dssp             EE--EEESCTTTSCCSCSCEEEEEECCCBTTBT------------------------------TTCHHHHHHHHHHHHEE
T ss_pred             EE--EEEeeHHHhcCCCCcEEEEEEcCchhhcc------------------------------CHHHHHHHHHHHHhhcC
Confidence            22  23377888789999999999954211110                              01345577888889999


Q ss_pred             cCCeEE
Q 024331          210 AEGRMV  215 (269)
Q Consensus       210 pGG~lv  215 (269)
                      |||+++
T Consensus       163 pgG~li  168 (340)
T 2fyt_A          163 KGGSVY  168 (340)
T ss_dssp             EEEEEE
T ss_pred             CCcEEE
Confidence            999998

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.15  E-value=2.2e-05  Score=62.74  Aligned_cols=110  Identities=17%  Similarity=0.186  Sum_probs=69.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++      .|..+++..|+..  .-.    +            .     +-
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~--------~~~------~~~~~v~~~D~~~--~~~----~------------~-----~~   64 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVV--------TQI------GGKGRIIACDLLP--MDP----I------------V-----GV   64 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHH--------HHH------CTTCEEEEEESSC--CCC----C------------T-----TE
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------HHh------CCCCeEEEEECcc--ccc----c------------C-----cE
Confidence            45699999999999888776        432      1457888888765  200    0            0     11


Q ss_pred             eEEeecCCCccCCC--------CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 024331          130 CFFTGVPGSFYGRL--------FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL  201 (269)
Q Consensus       130 ~f~~~vpgSFy~~l--------fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL  201 (269)
                      .++.   +++....        +|++++|++++...+||......                 .   ..  ........+|
T Consensus        65 ~~~~---~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~-----------------~---~~--~~~~~~~~~l  119 (180)
T 1ej0_A           65 DFLQ---GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAV-----------------D---IP--RAMYLVELAL  119 (180)
T ss_dssp             EEEE---SCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHH-----------------H---HH--HHHHHHHHHH
T ss_pred             EEEE---cccccchhhhhhhccCCCCceeEEEECCCccccCCCcc-----------------c---hH--HHHHHHHHHH
Confidence            2333   5666544        78899999999999988533100                 0   00  0112234555


Q ss_pred             hhhhhhhccCCeEEEEeccc
Q 024331          202 KCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       202 ~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      +.=.+-|+|||.++++....
T Consensus       120 ~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A          120 EMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHHHHHEEEEEEEEEEEESS
T ss_pred             HHHHHHcCCCcEEEEEEecC
Confidence            55566788999999987644

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.13  E-value=1.3e-05  Score=67.31  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..+..+.        +.         ..+|+..|....    .   +....+.+. +.+  +   .+
T Consensus        77 ~~~~vLdiG~G~G~~~~~la--------~~---------~~~v~~vD~~~~----~---~~~a~~~~~-~~~--~---~~  126 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILA--------HL---------VQHVCSVERIKG----L---QWQARRRLK-NLD--L---HN  126 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HH---------SSEEEEEESCHH----H---HHHHHHHHH-HTT--C---CS
T ss_pred             CCCEEEEEcCCCCHHHHHHH--------Hh---------CCEEEEEecCHH----H---HHHHHHHHH-HcC--C---Cc
Confidence            46799999999999988776        33         157888887543    0   111111111 112  1   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+-++....+.+.+++|++++..++|++.+                        ..               .+-|+
T Consensus       127 --v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~------------------------~~---------------~~~L~  165 (210)
T 3lbf_A          127 --VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT------------------------AL---------------MTQLD  165 (210)
T ss_dssp             --EEEEESCGGGCCGGGCCEEEEEESSBCSSCCT------------------------HH---------------HHTEE
T ss_pred             --eEEEECCcccCCccCCCccEEEEccchhhhhH------------------------HH---------------HHhcc
Confidence              22233788887778899999999988887431                        11               45688


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||++++++..
T Consensus       166 pgG~lv~~~~~  176 (210)
T 3lbf_A          166 EGGILVLPVGE  176 (210)
T ss_dssp             EEEEEEEEECS
T ss_pred             cCcEEEEEEcC
Confidence            99999999865

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.13  E-value=3e-06  Score=71.88  Aligned_cols=73  Identities=14%  Similarity=0.069  Sum_probs=47.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHH---HHHHhc-CCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQK---ILRKQL-GSASG  125 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~---~~~~~~-~~~~~  125 (269)
                      ...+|+|+|||+|..+..++        +++       |..+|+..|+...          ++..   ..+++. ..+. 
T Consensus        27 ~~~~vLDiGcG~G~~~~~la--------~~~-------p~~~v~gvD~s~~----------~l~~~~~~a~~~~~~~~~-   80 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVA--------RQN-------PSRLVVALDADKS----------RMEKISAKAAAKPAKGGL-   80 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHH--------HHC-------TTEEEEEEESCGG----------GGHHHHHHHTSCGGGTCC-
T ss_pred             CCCEEEEecCCCCHHHHHHH--------HHC-------CCCEEEEEECCHH----------HHHHHHHHHHHhhhhcCC-
Confidence            46899999999999998877        543       5689999998776          2221   111111 1111 


Q ss_pred             CCCceEEeecCCCccCCCCCCCceeeEe
Q 024331          126 AAGQCFFTGVPGSFYGRLFPRNSVHLFH  153 (269)
Q Consensus       126 ~~~~~f~~~vpgSFy~~lfP~~Svd~~~  153 (269)
                       .+-.|+.   +++....+++++ |.++
T Consensus        81 -~~v~~~~---~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           81 -PNLLYLW---ATAERLPPLSGV-GELH  103 (218)
T ss_dssp             -TTEEEEE---CCSTTCCSCCCE-EEEE
T ss_pred             -CceEEEe---cchhhCCCCCCC-CEEE
Confidence             0113433   888888899888 8777

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.12  E-value=4.9e-06  Score=68.65  Aligned_cols=73  Identities=19%  Similarity=0.137  Sum_probs=51.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.++        ++         - +|+..|+...          +...      ..     .--
T Consensus        24 ~~~vLD~GcG~G~~~~~l~--------~~---------~-~v~gvD~s~~----------~~~~------~~-----~~~   64 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLR--------KR---------N-TVVSTDLNIR----------ALES------HR-----GGN   64 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHT--------TT---------S-EEEEEESCHH----------HHHT------CS-----SSC
T ss_pred             CCeEEEeccCccHHHHHHH--------hc---------C-cEEEEECCHH----------HHhc------cc-----CCe
Confidence            4599999999999888766        22         1 8889987654          2211      11     113


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCC
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPD  166 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~  166 (269)
                      ++.   +++.. .++++++|+++|+..+||.+..+.
T Consensus        65 ~~~---~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~   96 (170)
T 3q87_B           65 LVR---ADLLC-SINQESVDVVVFNPPYVPDTDDPI   96 (170)
T ss_dssp             EEE---CSTTT-TBCGGGCSEEEECCCCBTTCCCTT
T ss_pred             EEE---CChhh-hcccCCCCEEEECCCCccCCcccc
Confidence            444   77777 678899999999999999776543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.11  E-value=4.2e-06  Score=68.45  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=66.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +.         ..+|+..|+...=       +......... .+  .   .+
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~--------~~---------~~~v~~~D~~~~~-------~~~a~~~~~~-~~--~---~~  101 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALA--------DE---------VKSTTMADINRRA-------IKLAKENIKL-NN--L---DN  101 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHG--------GG---------SSEEEEEESCHHH-------HHHHHHHHHH-TT--C---TT
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------Hc---------CCeEEEEECCHHH-------HHHHHHHHHH-cC--C---Cc
Confidence            45799999999998887665        21         2688888875540       1111111111 11  1   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      -.+..+.+++.. .++++++|++++...+||-                                ..++..+|+.=.+-|+
T Consensus       102 ~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~--------------------------------~~~~~~~l~~~~~~L~  148 (194)
T 1dus_A          102 YDIRVVHSDLYE-NVKDRKYNKIITNPPIRAG--------------------------------KEVLHRIIEEGKELLK  148 (194)
T ss_dssp             SCEEEEECSTTT-TCTTSCEEEEEECCCSTTC--------------------------------HHHHHHHHHHHHHHEE
T ss_pred             cceEEEECchhc-ccccCCceEEEECCCcccc--------------------------------hhHHHHHHHHHHHHcC
Confidence            001223366666 5678899999997777760                                1234445555567788


Q ss_pred             cCCeEEEEeccc
Q 024331          210 AEGRMVLTFLGR  221 (269)
Q Consensus       210 pGG~lv~~~~g~  221 (269)
                      |||.+++.....
T Consensus       149 ~gG~l~~~~~~~  160 (194)
T 1dus_A          149 DNGEIWVVIQTK  160 (194)
T ss_dssp             EEEEEEEEEEST
T ss_pred             CCCEEEEEECCC
Confidence            999999988654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.11  E-value=1.7e-06  Score=72.21  Aligned_cols=130  Identities=14%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..++.++        ++.       |..+|+..|+...          +. +..+++... .    
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~--------~~~-------~~~~v~~vD~~~~----------~~-~~a~~~~~~-~----   77 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIA--------LAC-------PGVSVTAVDLSMD----------AL-AVARRNAER-F----   77 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHH--------HHC-------TTEEEEEEECC------------------------------
T ss_pred             CCCCEEEEecCCHhHHHHHHH--------HhC-------CCCeEEEEECCHH----------HH-HHHHHHHHH-h----
Confidence            457899999999999888777        442       5689999998665          11 111111100 0    


Q ss_pred             ceEEeecCCCccCCCCCC-----CceeeEeccccccccccC---CCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHH
Q 024331          129 QCFFTGVPGSFYGRLFPR-----NSVHLFHSSYSLQWLSQV---PDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLF  200 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~-----~Svd~~~Ss~alHWLS~~---P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F  200 (269)
                      ..-+..+.+++.. .+++     +++|++++.-..++....   +..+....-.....+.          ......+..|
T Consensus        78 ~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  146 (215)
T 4dzr_A           78 GAVVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGG----------EDGLQFYRRM  146 (215)
T ss_dssp             -----CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC----------------------------------CTTHHHHHH
T ss_pred             CCceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCC----------CcHHHHHHHH
Confidence            0122334467776 6776     999999997665543322   1111100000000000          0122345778


Q ss_pred             HhhhhhhhccCCeEEEEecc
Q 024331          201 LKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       201 L~~Ra~EL~pGG~lv~~~~g  220 (269)
                      ++.=.+-|+|||++++...+
T Consensus       147 l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          147 AALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             HTCCGGGBCSSSEEEEEECT
T ss_pred             HHHHHHHhcCCCeEEEEEEC
Confidence            88888999999995555444

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.11  E-value=9.4e-06  Score=70.95  Aligned_cols=72  Identities=25%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +..       |..+|+..|....          +. +..++. +.     .-
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~----------~~-~~a~~~-~~-----~~  132 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFA--------DAL-------PEITTFGLDVSKV----------AI-KAAAKR-YP-----QV  132 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHH--------HTC-------TTSEEEEEESCHH----------HH-HHHHHH-CT-----TS
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HhC-------CCCeEEEEeCCHH----------HH-HHHHHh-CC-----Cc
Confidence            46799999999999988776        431       3468999987654          21 112222 11     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSY  156 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~  156 (269)
                      .|+.   +++....++++++|+++++.
T Consensus       133 ~~~~---~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A          133 TFCV---ASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             EEEE---CCTTSCSBCTTCEEEEEEES
T ss_pred             EEEE---cchhhCCCCCCceeEEEEeC
Confidence            3433   67777789999999999854

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.09  E-value=1e-05  Score=67.80  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=64.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.+.        +.        +..+|+..|+...       .+....+.... .+.     .+
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~--------~~--------~~~~v~~vD~s~~-------~~~~a~~~~~~-~~~-----~~  110 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAH--------KL--------GAKSVLATDISDE-------SMTAAEENAAL-NGI-----YD  110 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEESCHH-------HHHHHHHHHHH-TTC-----CC
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HC--------CCCEEEEEECCHH-------HHHHHHHHHHH-cCC-----Cc
Confidence            45799999999998877654        22        3358999998653       01111111111 111     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.+++..  ++++++|++++...+|+                                    +..+|+.=.+-|+
T Consensus       111 --v~~~~~d~~~--~~~~~fD~i~~~~~~~~------------------------------------~~~~l~~~~~~L~  150 (205)
T 3grz_A          111 --IALQKTSLLA--DVDGKFDLIVANILAEI------------------------------------LLDLIPQLDSHLN  150 (205)
T ss_dssp             --CEEEESSTTT--TCCSCEEEEEEESCHHH------------------------------------HHHHGGGSGGGEE
T ss_pred             --eEEEeccccc--cCCCCceEEEECCcHHH------------------------------------HHHHHHHHHHhcC
Confidence              2223366655  45789999999655444                                    2345555578899


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+++++.+...
T Consensus       151 ~gG~l~~~~~~~~  163 (205)
T 3grz_A          151 EDGQVIFSGIDYL  163 (205)
T ss_dssp             EEEEEEEEEEEGG
T ss_pred             CCCEEEEEecCcc
Confidence            9999999766553

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.08  E-value=3.6e-06  Score=74.25  Aligned_cols=63  Identities=13%  Similarity=0.070  Sum_probs=40.8

Q ss_pred             hHHHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecC
Q 024331           17 SYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND   96 (269)
Q Consensus        17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nD   96 (269)
                      .|......|.+....++..|+    .+   ......+|+|+|||+|..|..+.        +..      .|+-+|+..|
T Consensus        50 ~yr~w~~~~skla~~ll~~l~----~~---~l~~g~~VLDlG~GtG~~t~~la--------~~v------~~~G~V~avD  108 (232)
T 3id6_C           50 EYREWNAFRSKLAGAILKGLK----TN---PIRKGTKVLYLGAASGTTISHVS--------DII------ELNGKAYGVE  108 (232)
T ss_dssp             EEEECCTTTCHHHHHHHTTCS----CC---SCCTTCEEEEETCTTSHHHHHHH--------HHH------TTTSEEEEEE
T ss_pred             chhhhchHHHHHHHHHHhhhh----hc---CCCCCCEEEEEeecCCHHHHHHH--------HHh------CCCCEEEEEE
Confidence            366666677665554433221    11   12245899999999999888777        432      1457999999


Q ss_pred             CCCC
Q 024331           97 LPGN  100 (269)
Q Consensus        97 LP~N  100 (269)
                      +...
T Consensus       109 ~s~~  112 (232)
T 3id6_C          109 FSPR  112 (232)
T ss_dssp             CCHH
T ss_pred             CcHH
Confidence            8654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.06  E-value=7.6e-06  Score=78.43  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=68.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhh-HHHHHHHHHhcCCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSL-ASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l-~~~~~~~~~~~~~~~~~~~  128 (269)
                      ...+|+|+|||+|..++.++        ...       +.-+|+..|+..+ .-.+.+.. ..+.... +..|...   .
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA--------~~~-------g~~kVvGIDiS~~-~lelAr~n~e~frkr~-~~~Gl~~---~  232 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVA--------AAT-------NCKHHYGVEKADI-PAKYAETMDREFRKWM-KWYGKKH---A  232 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHC-------CCSEEEEEECCHH-HHHHHHHHHHHHHHHH-HHHTBCC---C
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHC-------CCCEEEEEeCCHH-HHHHHHHHHHHHHHHH-HHhCCCC---C
Confidence            45799999999999988776        332       2236999988764 11122111 1111101 1112100   1


Q ss_pred             ceEEeecCCCccCCCCCC--CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPR--NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~--~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      +  +.-+-|+|....|++  .++|+++++..++|                                  .|...-|+...+
T Consensus       233 r--Vefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~----------------------------------pdl~~aL~Ei~R  276 (438)
T 3uwp_A          233 E--YTLERGDFLSEEWRERIANTSVIFVNNFAFG----------------------------------PEVDHQLKERFA  276 (438)
T ss_dssp             E--EEEEECCTTSHHHHHHHHTCSEEEECCTTCC----------------------------------HHHHHHHHHHHT
T ss_pred             C--eEEEECcccCCccccccCCccEEEEcccccC----------------------------------chHHHHHHHHHH
Confidence            2  223449999988765  57999999766554                                  133334445568


Q ss_pred             hhccCCeEEEEec
Q 024331          207 ELVAEGRMVLTFL  219 (269)
Q Consensus       207 EL~pGG~lv~~~~  219 (269)
                      .|||||+++++-.
T Consensus       277 vLKPGGrIVssE~  289 (438)
T 3uwp_A          277 NMKEGGRIVSSKP  289 (438)
T ss_dssp             TSCTTCEEEESSC
T ss_pred             cCCCCcEEEEeec
Confidence            9999999998844

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.05  E-value=1.9e-05  Score=72.21  Aligned_cols=105  Identities=18%  Similarity=0.240  Sum_probs=65.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.++        +.        +..+|+..|+. . .      +....+... ..+..    ..+
T Consensus        39 ~~~VLDiGcGtG~ls~~la--------~~--------g~~~v~~vD~s-~-~------~~~a~~~~~-~~~~~----~~i   89 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAA--------KH--------GAKHVIGVDMS-S-I------IEMAKELVE-LNGFS----DKI   89 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHH--------HT--------CCSEEEEEESS-T-H------HHHHHHHHH-HTTCT----TTE
T ss_pred             CCEEEEecCccHHHHHHHH--------HC--------CCCEEEEEChH-H-H------HHHHHHHHH-HcCCC----CCE
Confidence            4699999999998877665        32        23589999986 3 2      111111122 12211    122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      -  .+.+++....+|.+++|+++|....+.+..                              ..++..+|+.+.+-|+|
T Consensus        90 ~--~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~------------------------------~~~~~~~l~~~~~~Lkp  137 (328)
T 1g6q_1           90 T--LLRGKLEDVHLPFPKVDIIISEWMGYFLLY------------------------------ESMMDTVLYARDHYLVE  137 (328)
T ss_dssp             E--EEESCTTTSCCSSSCEEEEEECCCBTTBST------------------------------TCCHHHHHHHHHHHEEE
T ss_pred             E--EEECchhhccCCCCcccEEEEeCchhhccc------------------------------HHHHHHHHHHHHhhcCC
Confidence            2  233778777889899999999643332211                              01334567777888999


Q ss_pred             CCeEEE
Q 024331          211 EGRMVL  216 (269)
Q Consensus       211 GG~lv~  216 (269)
                      ||+++.
T Consensus       138 gG~li~  143 (328)
T 1g6q_1          138 GGLIFP  143 (328)
T ss_dssp             EEEEES
T ss_pred             CeEEEE
Confidence            999973

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.05  E-value=1.5e-05  Score=66.31  Aligned_cols=120  Identities=19%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +++      .|..+|+..|+...       .+....+.+.. .+..    .+
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~--------~~~------~~~~~v~~vD~s~~-------~~~~a~~~~~~-~~~~----~~   75 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLA--------SLV------GENGRVFGFDIQDK-------AIANTTKKLTD-LNLI----DR   75 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHH--------HHH------CTTCEEEEECSCHH-------HHHHHHHHHHH-TTCG----GG
T ss_pred             CCCEEEEcCCCCCHHHHHHH--------HHh------CCCCEEEEEECCHH-------HHHHHHHHHHH-cCCC----CC
Confidence            35799999999999888777        443      13468999998654       01111111111 1110    12


Q ss_pred             eEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                        +..+-+++.... ++++++|++++...+     +|..    ...+.    ..+           ++...+|+.=.+-|
T Consensus        76 --v~~~~~d~~~~~~~~~~~fD~v~~~~~~-----~~~~----~~~~~----~~~-----------~~~~~~l~~~~~~L  129 (197)
T 3eey_A           76 --VTLIKDGHQNMDKYIDCPVKAVMFNLGY-----LPSG----DHSIS----TRP-----------ETTIQALSKAMELL  129 (197)
T ss_dssp             --EEEECSCGGGGGGTCCSCEEEEEEEESB-----CTTS----CTTCB----CCH-----------HHHHHHHHHHHHHE
T ss_pred             --eEEEECCHHHHhhhccCCceEEEEcCCc-----ccCc----ccccc----cCc-----------ccHHHHHHHHHHhC
Confidence              222347776654 677999999987555     2211    11111    011           12333555556677


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||++++.....
T Consensus       130 k~gG~l~~~~~~~  142 (197)
T 3eey_A          130 VTGGIITVVIYYG  142 (197)
T ss_dssp             EEEEEEEEEECCB
T ss_pred             cCCCEEEEEEccC
Confidence            8999999987543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.03  E-value=1.4e-05  Score=72.12  Aligned_cols=44  Identities=16%  Similarity=0.255  Sum_probs=27.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||||..+..++-.    +.+..   +.....++|+..|+..+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~----L~e~~---~~~~~~~~I~atDis~~  148 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAIT----LADAL---GMAPGRWKVFASDIDTE  148 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHH----HHHHH---CSCTTSEEEEEEESCHH
T ss_pred             CCcEEEEeeccCChhHHHHHHH----HHHhc---ccCCCCeEEEEEECCHH
Confidence            4689999999999854332211    11322   11111479999999876

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.01  E-value=9.8e-06  Score=74.51  Aligned_cols=103  Identities=18%  Similarity=0.314  Sum_probs=68.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++       |..+++..|+| . .      +.       . . ...   .+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~-~-~------~~-------~-a-~~~---~~  237 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIH--------EIF-------PHLKCTVFDQP-Q-V------VG-------N-L-TGN---EN  237 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTSEEEEEECH-H-H------HS-------S-C-CCC---SS
T ss_pred             CCCEEEEECCCcCHHHHHHH--------HHC-------CCCeEEEeccH-H-H------Hh-------h-c-ccC---CC
Confidence            35799999999999888777        654       56788888985 2 1      11       0 0 001   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                        +..+.++|+. .+|  ++|+++++..||+.++                               .+...+|+.=++-|+
T Consensus       238 --v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d-------------------------------~~~~~~l~~~~~~L~  281 (358)
T 1zg3_A          238 --LNFVGGDMFK-SIP--SADAVLLKWVLHDWND-------------------------------EQSLKILKNSKEAIS  281 (358)
T ss_dssp             --EEEEECCTTT-CCC--CCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHTG
T ss_pred             --cEEEeCccCC-CCC--CceEEEEcccccCCCH-------------------------------HHHHHHHHHHHHhCC
Confidence              3345689988 677  4999999999997422                               112233443356677


Q ss_pred             c---CCeEEEEecccCC
Q 024331          210 A---EGRMVLTFLGRKS  223 (269)
Q Consensus       210 p---GG~lv~~~~g~~~  223 (269)
                      |   ||++++..+...+
T Consensus       282 p~~~gG~l~i~e~~~~~  298 (358)
T 1zg3_A          282 HKGKDGKVIIIDISIDE  298 (358)
T ss_dssp             GGGGGCEEEEEECEECT
T ss_pred             CCCCCcEEEEEEeccCC
Confidence            9   9999998776543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.00  E-value=3.2e-06  Score=77.75  Aligned_cols=108  Identities=14%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..++.++        ++.       |..+|+..|....       .+......+.. .+.     ...
T Consensus       197 ~~~VLDlGcG~G~~~~~la--------~~~-------~~~~v~~vD~s~~-------~l~~a~~~~~~-~~~-----~~~  248 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFA--------RHS-------PKIRLTLCDVSAP-------AVEASRATLAA-NGV-----EGE  248 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHH--------HHC-------TTCBCEEEESBHH-------HHHHHHHHHHH-TTC-----CCE
T ss_pred             CCeEEEecCccCHHHHHHH--------HHC-------CCCEEEEEECCHH-------HHHHHHHHHHH-hCC-----CCE
Confidence            4589999999999988776        442       5678999997553       01111111111 111     112


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      +   +.+++..  ++++++|+++++..+||.-.                            ....+...||+.=.+-|+|
T Consensus       249 ~---~~~d~~~--~~~~~fD~Iv~~~~~~~g~~----------------------------~~~~~~~~~l~~~~~~Lkp  295 (343)
T 2pjd_A          249 V---FASNVFS--EVKGRFDMIISNPPFHDGMQ----------------------------TSLDAAQTLIRGAVRHLNS  295 (343)
T ss_dssp             E---EECSTTT--TCCSCEEEEEECCCCCSSSH----------------------------HHHHHHHHHHHHHGGGEEE
T ss_pred             E---EEccccc--cccCCeeEEEECCCcccCcc----------------------------CCHHHHHHHHHHHHHhCCC
Confidence            2   3366665  34789999999988887211                            0124567788888899999


Q ss_pred             CCeEEEEec
Q 024331          211 EGRMVLTFL  219 (269)
Q Consensus       211 GG~lv~~~~  219 (269)
                      ||.+++...
T Consensus       296 gG~l~i~~~  304 (343)
T 2pjd_A          296 GGELRIVAN  304 (343)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEEc
Confidence            999999764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.00  E-value=1.1e-05  Score=70.53  Aligned_cols=87  Identities=11%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ++       .|...|+..|+... .   ..........+++....+.   .+
T Consensus        46 ~~~~vLDiGcG~G~~~~~la--------~~-------~p~~~v~GiDis~~-~---l~~A~~~~~~l~~~~~~~~---~n  103 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELS--------PL-------FPDTLILGLEIRVK-V---SDYVQDRIRALRAAPAGGF---QN  103 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHG--------GG-------STTSEEEEEESCHH-H---HHHHHHHHHHHHHSTTCCC---TT
T ss_pred             CCCeEEEEccCCcHHHHHHH--------HH-------CCCCeEEEEECCHH-H---HHHHHHHHHHHHHHHhcCC---Ce
Confidence            46799999999999988776        43       26789999997665 0   0000000001111000111   23


Q ss_pred             eEEeecCCCccC---CCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYG---RLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~---~lfP~~Svd~~~Ss~alHW  160 (269)
                      +-+  +-++...   ..||++++|.++..+.-.|
T Consensus       104 v~~--~~~d~~~~l~~~~~~~~~D~v~~~~~dp~  135 (235)
T 3ckk_A          104 IAC--LRSNAMKHLPNFFYKGQLTKMFFLFPDPH  135 (235)
T ss_dssp             EEE--EECCTTTCHHHHCCTTCEEEEEEESCC--
T ss_pred             EEE--EECcHHHhhhhhCCCcCeeEEEEeCCCch
Confidence            222  2356554   2388999999998776666

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.98  E-value=2.2e-05  Score=65.00  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhc--CCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKL--GSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~--~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      ...+|+|+|||+|..++.++        +++...  +...|..+|+..|+...-      .++                 
T Consensus        22 ~~~~vLDlGcG~G~~~~~la--------~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~-----------------   70 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAV--------QKVNAAGTDPSSPVGFVLGVDLLHIF------PLE-----------------   70 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHH--------HHTTTTCCCTTSCCCEEEEECSSCCC------CCT-----------------
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HHhccccccccCCCceEEEEechhcc------cCC-----------------
Confidence            45799999999999988777        443100  011234789999987630      000                 


Q ss_pred             CceEEeecCCCccCC--------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHH
Q 024331          128 GQCFFTGVPGSFYGR--------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSL  199 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~--------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~  199 (269)
                      .-.++  ..+++...        .++++++|+++|..++||.-.                    ...+.+  ........
T Consensus        71 ~~~~~--~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~--------------------~~~~~~--~~~~~~~~  126 (196)
T 2nyu_A           71 GATFL--CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGF--------------------RDLDHD--RLISLCLT  126 (196)
T ss_dssp             TCEEE--CSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSC--------------------HHHHHH--HHHHHHHH
T ss_pred             CCeEE--EeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCC--------------------cccCHH--HHHHHHHH
Confidence            11222  02454432        256789999999776666211                    000010  01122345


Q ss_pred             HHhhhhhhhccCCeEEEEecc
Q 024331          200 FLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       200 FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                      +|+.=.+-|+|||++++..+.
T Consensus       127 ~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A          127 LLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCEEEEEecC
Confidence            555556778899999998653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.98  E-value=1e-05  Score=75.88  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=64.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.++        +++       |..+|+..|....       .+......+.. .+..    ...
T Consensus       223 ~~~VLDlGcG~G~~s~~la--------~~~-------p~~~V~gvD~s~~-------al~~Ar~n~~~-ngl~----~~~  275 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDESPM-------AVASSRLNVET-NMPE----ALD  275 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHH--------HHC-------TTCEEEEEESCHH-------HHHHHHHHHHH-HCGG----GGG
T ss_pred             CCeEEEEeCcchHHHHHHH--------HHC-------CCCEEEEEECcHH-------HHHHHHHHHHH-cCCC----cCc
Confidence            3799999999999998877        543       5689999997543       11111111111 1110    011


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      -+..+.++++. .+|++++|+++|+-.+|+...++...                     ..       .||+.=.+-|+|
T Consensus       276 ~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~---------------------~~-------~~l~~~~~~Lkp  326 (375)
T 4dcm_A          276 RCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNV---------------------AW-------EMFHHARRCLKI  326 (375)
T ss_dssp             GEEEEECSTTT-TCCTTCEEEEEECCCC-------CCH---------------------HH-------HHHHHHHHHEEE
T ss_pred             eEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHH---------------------HH-------HHHHHHHHhCCC
Confidence            12223367776 67889999999988888743332211                     11       233333455679


Q ss_pred             CCeEEEEe
Q 024331          211 EGRMVLTF  218 (269)
Q Consensus       211 GG~lv~~~  218 (269)
                      ||+++++.
T Consensus       327 gG~l~iv~  334 (375)
T 4dcm_A          327 NGELYIVA  334 (375)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999975

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.98  E-value=8.6e-05  Score=63.76  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +++       +..+|+..|....          +. +.+++......   .-
T Consensus        74 ~~~~VLDlGcG~G~~~~~la--------~~~-------~~~~v~gvD~s~~----------~~-~~a~~~~~~~~---~v  124 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVA--------DIA-------DKGIVYAIEYAPR----------IM-RELLDACAERE---NI  124 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHH--------HHT-------TTSEEEEEESCHH----------HH-HHHHHHTTTCT---TE
T ss_pred             CCCEEEEEcccCCHHHHHHH--------HHc-------CCcEEEEEECCHH----------HH-HHHHHHhhcCC---Ce
Confidence            45799999999999988777        543       2468999987653          21 11222211100   12


Q ss_pred             eEEeecCCCccC----CCCCCCceeeEe
Q 024331          130 CFFTGVPGSFYG----RLFPRNSVHLFH  153 (269)
Q Consensus       130 ~f~~~vpgSFy~----~lfP~~Svd~~~  153 (269)
                      .++.   +++..    ..++ +++|+++
T Consensus       125 ~~~~---~d~~~~~~~~~~~-~~~D~v~  148 (230)
T 1fbn_A          125 IPIL---GDANKPQEYANIV-EKVDVIY  148 (230)
T ss_dssp             EEEE---CCTTCGGGGTTTS-CCEEEEE
T ss_pred             EEEE---CCCCCcccccccC-ccEEEEE
Confidence            3433   56655    6666 8999998

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.98  E-value=7.4e-06  Score=71.78  Aligned_cols=48  Identities=21%  Similarity=0.187  Sum_probs=33.9

Q ss_pred             HHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           35 ITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        35 ~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .|++++..+.  ..++..+|+|+|||+|..|..++        ++        ...+|+..|+..+
T Consensus        24 kL~~~L~~~~--~~~~g~~VLDiGcGtG~~t~~la--------~~--------g~~~V~gvDis~~   71 (232)
T 3opn_A           24 KLEKALKEFH--LEINGKTCLDIGSSTGGFTDVML--------QN--------GAKLVYALDVGTN   71 (232)
T ss_dssp             HHHHHHHHTT--CCCTTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEECSSCC
T ss_pred             HHHHHHHHcC--CCCCCCEEEEEccCCCHHHHHHH--------hc--------CCCEEEEEcCCHH
Confidence            3455555442  23345799999999999988776        32        1248999999988

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.97  E-value=1.8e-05  Score=71.72  Aligned_cols=114  Identities=13%  Similarity=0.135  Sum_probs=68.6

Q ss_pred             CceEEEeecCCC--CcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           50 TKVAIADLGCSS--GPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        50 ~~~~IaD~GCs~--G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      ..-+|+|+|||+  +.|+..++        ++.      .|+.+|+..|....          ++.. .++...... ..
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la--------~~~------~P~arVv~VD~sp~----------mLa~-Ar~~l~~~~-~~  131 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIA--------QSV------APESRVVYVDNDPI----------VLTL-SQGLLASTP-EG  131 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHH--------HHH------CTTCEEEEEECCHH----------HHHT-THHHHCCCS-SS
T ss_pred             CCCEEEEeCCCCCcccHHHHHH--------HHH------CCCCEEEEEeCChH----------HHHH-HHHHhccCC-CC
Confidence            346899999998  77877666        331      26799999997654          3321 222221100 00


Q ss_pred             CceEEeecCCCccCC------CCCCCcee-----eEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHH
Q 024331          128 GQCFFTGVPGSFYGR------LFPRNSVH-----LFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRD  196 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~------lfP~~Svd-----~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D  196 (269)
                      +--|+.   +++...      +...+++|     .++++..||||.+-..               +..+.+.+       
T Consensus       132 ~~~~v~---aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~---------------p~~~l~~l-------  186 (277)
T 3giw_A          132 RTAYVE---ADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD---------------AVGIVRRL-------  186 (277)
T ss_dssp             EEEEEE---CCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC---------------HHHHHHHH-------
T ss_pred             cEEEEE---ecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh---------------HHHHHHHH-------
Confidence            123444   677653      11145666     4889999999855210               11223333       


Q ss_pred             HHHHHhhhhhhhccCCeEEEEecccC
Q 024331          197 FSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       197 ~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                              .+-|+|||+|+++.+..+
T Consensus       187 --------~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          187 --------LEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             --------HTTSCTTCEEEEEEECCT
T ss_pred             --------HHhCCCCcEEEEEeccCC
Confidence                    667889999999998775

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.96  E-value=5.7e-05  Score=63.58  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=49.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +..      .|..+|+..|...+ .      +....+... ..+.     .+
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~--------~~~------~~~~~v~~vD~~~~-~------~~~a~~~~~-~~~~-----~~  129 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTA--------EIV------GEDGLVVSIERIPE-L------AEKAERTLR-KLGY-----DN  129 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEEESCHH-H------HHHHHHHHH-HHTC-----TT
T ss_pred             CCCEEEEECCCccHHHHHHH--------HHh------CCCCEEEEEeCCHH-H------HHHHHHHHH-HcCC-----CC
Confidence            35799999999999988777        442      13468899887543 1      111111111 1121     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      +-  .+.+++...+.+.+++|++++..++|++
T Consensus       130 v~--~~~~d~~~~~~~~~~fD~v~~~~~~~~~  159 (215)
T 2yxe_A          130 VI--VIVGDGTLGYEPLAPYDRIYTTAAGPKI  159 (215)
T ss_dssp             EE--EEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             eE--EEECCcccCCCCCCCeeEEEECCchHHH
Confidence            21  1235665443347899999999998874

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.94  E-value=1.9e-05  Score=67.87  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        +++      .|..+|+..|+...       .+....+..+.+  .     .-
T Consensus        77 ~~~~vLDlG~G~G~~~~~la--------~~~------g~~~~v~gvD~s~~-------~i~~~~~~a~~~--~-----~v  128 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVS--------DIV------GPDGLVYAVEFSHR-------SGRDLINLAKKR--T-----NI  128 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTCEEEEECCCHH-------HHHHHHHHHHHC--T-----TE
T ss_pred             CCCEEEEEcccCCHHHHHHH--------HHh------CCCcEEEEEECCHH-------HHHHHHHHhhcc--C-----Ce
Confidence            35799999999999988877        443      14468999987653       111111212221  1     11


Q ss_pred             eEEeecCCCccC---CCCCCCceeeEecc
Q 024331          130 CFFTGVPGSFYG---RLFPRNSVHLFHSS  155 (269)
Q Consensus       130 ~f~~~vpgSFy~---~lfP~~Svd~~~Ss  155 (269)
                      .|+.   +++..   ..++++++|++++.
T Consensus       129 ~~~~---~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A          129 IPVI---EDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             EEEC---SCTTCGGGGGGGCCCEEEEEEC
T ss_pred             EEEE---cccCChhhhcccCCcEEEEEEc
Confidence            2333   66655   34567899999993

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.94  E-value=9.8e-05  Score=61.81  Aligned_cols=121  Identities=15%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ++.       |..+|+..|.... .      +....+... ..+.     .+
T Consensus        40 ~~~~vLDiG~G~G~~~~~la--------~~~-------~~~~v~~vD~s~~-~------~~~a~~~~~-~~~~-----~~   91 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEAS--------NLM-------PNGRIFALERNPQ-Y------LGFIRDNLK-KFVA-----RN   91 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HHC-------TTSEEEEEECCHH-H------HHHHHHHHH-HHTC-----TT
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEeCCHH-H------HHHHHHHHH-HhCC-----Cc
Confidence            45799999999999988777        542       5689999997654 0      111111111 1121     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +  ..+.+++...+.+..++|++++..+++                                    +...+|+.=.+-|+
T Consensus        92 v--~~~~~d~~~~~~~~~~~D~i~~~~~~~------------------------------------~~~~~l~~~~~~Lk  133 (204)
T 3e05_A           92 V--TLVEAFAPEGLDDLPDPDRVFIGGSGG------------------------------------MLEEIIDAVDRRLK  133 (204)
T ss_dssp             E--EEEECCTTTTCTTSCCCSEEEESCCTT------------------------------------CHHHHHHHHHHHCC
T ss_pred             E--EEEeCChhhhhhcCCCCCEEEECCCCc------------------------------------CHHHHHHHHHHhcC
Confidence            2  122367666555557899999854442                                    11122333355677


Q ss_pred             cCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccC
Q 024331          210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVT  250 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~  250 (269)
                      |||++++......              ........|.+.|+
T Consensus       134 pgG~l~~~~~~~~--------------~~~~~~~~l~~~g~  160 (204)
T 3e05_A          134 SEGVIVLNAVTLD--------------TLTKAVEFLEDHGY  160 (204)
T ss_dssp             TTCEEEEEECBHH--------------HHHHHHHHHHHTTC
T ss_pred             CCeEEEEEecccc--------------cHHHHHHHHHHCCC
Confidence            9999999765432              34445555666775

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.92  E-value=3.8e-05  Score=65.37  Aligned_cols=78  Identities=14%  Similarity=0.026  Sum_probs=48.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +..         .+|+..|....          . .+..++.... .   ++
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~--------~~~---------~~v~~vD~~~~----------~-~~~a~~~~~~-~---~~  117 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIA--------EIV---------DKVVSVEINEK----------M-YNYASKLLSY-Y---NN  117 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHS---------SEEEEEESCHH----------H-HHHHHHHHTT-C---SS
T ss_pred             CCCEEEEEcCCCCHHHHHHH--------HHc---------CEEEEEeCCHH----------H-HHHHHHHHhh-c---CC
Confidence            35799999999999988776        431         47888886543          1 1112222111 0   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                        +..+.+++...+.+++++|++++..++|++
T Consensus       118 --v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A          118 --IKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             --EEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             --eEEEECCcccccccCCCccEEEECCcHHHH
Confidence              122336776645567899999999888874

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.91  E-value=1.3e-05  Score=69.49  Aligned_cols=134  Identities=14%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ...       |..+|+..|.... .      +....+... +.+.     .+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la--------~~~-------~~~~v~~vD~s~~-~------~~~a~~~~~-~~~~-----~~  121 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIK--------ICF-------PHLHVTIVDSLNK-R------ITFLEKLSE-ALQL-----EN  121 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHH--------HHC-------TTCEEEEEESCHH-H------HHHHHHHHH-HHTC-----SS
T ss_pred             CCCEEEEecCCCCHHHHHHH--------HhC-------CCCEEEEEeCCHH-H------HHHHHHHHH-HcCC-----CC
Confidence            45799999999999998777        331       5678999997653 0      111111111 1121     12


Q ss_pred             eEEeecCCCccCCCCC---CCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          130 CFFTGVPGSFYGRLFP---RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP---~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                        +..+.+++....++   ++++|+++|..           +                          .|+..+++.=.+
T Consensus       122 --v~~~~~d~~~~~~~~~~~~~fD~V~~~~-----------~--------------------------~~~~~~l~~~~~  162 (240)
T 1xdz_A          122 --TTFCHDRAETFGQRKDVRESYDIVTARA-----------V--------------------------ARLSVLSELCLP  162 (240)
T ss_dssp             --EEEEESCHHHHTTCTTTTTCEEEEEEEC-----------C--------------------------SCHHHHHHHHGG
T ss_pred             --EEEEeccHHHhcccccccCCccEEEEec-----------c--------------------------CCHHHHHHHHHH
Confidence              22334777766554   68999999832           0                          123344555567


Q ss_pred             hhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccc
Q 024331          207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLN  263 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~  263 (269)
                      -|+|||++++.. |..     ..      +-+....+.+...|+ ...++..|.+|.
T Consensus       163 ~LkpgG~l~~~~-g~~-----~~------~~~~~~~~~l~~~g~-~~~~~~~~~~~~  206 (240)
T 1xdz_A          163 LVKKNGLFVALK-AAS-----AE------EELNAGKKAITTLGG-ELENIHSFKLPI  206 (240)
T ss_dssp             GEEEEEEEEEEE-CC------CH------HHHHHHHHHHHHTTE-EEEEEEEEECTT
T ss_pred             hcCCCCEEEEEe-CCC-----ch------HHHHHHHHHHHHcCC-eEeEEEEEecCC
Confidence            889999998852 211     11      123444555666675 333445566664

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.91  E-value=4.3e-05  Score=65.03  Aligned_cols=88  Identities=11%  Similarity=-0.037  Sum_probs=51.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC---CCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS---ASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~---~~~~  126 (269)
                      ...+|+|+|||+|..++.+.        +...  ....|..+|+..|.... .      +....+.+.. .+.   ..  
T Consensus        80 ~~~~VLdiG~G~G~~~~~la--------~~~~--~~~~~~~~v~~vD~~~~-~------~~~a~~~~~~-~~~~~~~~--  139 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMA--------IKMN--VLENKNSYVIGLERVKD-L------VNFSLENIKR-DKPELLKI--  139 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHTT--TTTCTTCEEEEEESCHH-H------HHHHHHHHHH-HCGGGGSS--
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HHhc--ccCCCCCEEEEEeCCHH-H------HHHHHHHHHH-cCcccccc--
Confidence            35799999999999888776        4320  01125578999997543 1      1111111111 110   00  


Q ss_pred             CCceEEeecCCCccCCC----CCCCceeeEeccccccc
Q 024331          127 AGQCFFTGVPGSFYGRL----FPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~l----fP~~Svd~~~Ss~alHW  160 (269)
                      ..-.++.   +++...+    ++.+++|++++..++|+
T Consensus       140 ~~v~~~~---~d~~~~~~~~~~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          140 DNFKIIH---KNIYQVNEEEKKELGLFDAIHVGASASE  174 (227)
T ss_dssp             TTEEEEE---CCGGGCCHHHHHHHCCEEEEEECSBBSS
T ss_pred             CCEEEEE---CChHhcccccCccCCCcCEEEECCchHH
Confidence            0112333   6777655    67789999999888775

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.89  E-value=0.0002  Score=60.84  Aligned_cols=143  Identities=8%  Similarity=-0.011  Sum_probs=75.5

Q ss_pred             CCceEEEeecCC-CCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           49 PTKVAIADLGCS-SGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs-~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .+..+|+|+||| +|..++.++        ++.        ..+|+..|+...       .+........ ..+..    
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la--------~~~--------~~~v~~vD~s~~-------~~~~a~~~~~-~~~~~----  105 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAE--------KFF--------NCKVTATEVDEE-------FFEYARRNIE-RNNSN----  105 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHH--------HHH--------CCEEEEEECCHH-------HHHHHHHHHH-HTTCC----
T ss_pred             CCCCEEEEcCCCHHHHHHHHHH--------Hhc--------CCEEEEEECCHH-------HHHHHHHHHH-HhCCC----
Confidence            356899999999 999988776        332        268999997554       0111111111 11111    


Q ss_pred             CceEEeecCCCcc-CCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          128 GQCFFTGVPGSFY-GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       128 ~~~f~~~vpgSFy-~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                       --++.   ++.. -..+|++++|+++++-..+|......  .. ...-+..+..           ...+...||+.=.+
T Consensus       106 -v~~~~---~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~--~~-~~~~~~~~~~-----------~~~~~~~~l~~~~~  167 (230)
T 3evz_A          106 -VRLVK---SNGGIIKGVVEGTFDVIFSAPPYYDKPLGRV--LT-EREAIGGGKY-----------GEEFSVKLLEEAFD  167 (230)
T ss_dssp             -CEEEE---CSSCSSTTTCCSCEEEEEECCCCC------------------CCSS-----------SCHHHHHHHHHHGG
T ss_pred             -cEEEe---CCchhhhhcccCceeEEEECCCCcCCccccc--cC-hhhhhccCcc-----------chHHHHHHHHHHHH
Confidence             12333   5542 23567799999999877776544111  00 0000000000           01223456665567


Q ss_pred             hhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccC
Q 024331          207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVT  250 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~  250 (269)
                      -|+|||++++.+....             +......+.|.+.|+
T Consensus       168 ~LkpgG~l~~~~~~~~-------------~~~~~~~~~l~~~g~  198 (230)
T 3evz_A          168 HLNPGGKVALYLPDKE-------------KLLNVIKERGIKLGY  198 (230)
T ss_dssp             GEEEEEEEEEEEESCH-------------HHHHHHHHHHHHTTC
T ss_pred             HhCCCeEEEEEecccH-------------hHHHHHHHHHHHcCC
Confidence            7889999999764321             234555566667776

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.88  E-value=2.3e-05  Score=63.99  Aligned_cols=110  Identities=9%  Similarity=-0.058  Sum_probs=62.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|..++.++        ++        +..+|+..|+...          +. +.+++.. ..++  ..
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~--------~~--------~~~~v~~vD~~~~----------~~-~~a~~~~~~~~~--~~   81 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAV--------SR--------GMSAAVLVEKNRK----------AQ-AIIQDNIIMTKA--EN   81 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHH--------HT--------TCCEEEEECCCHH----------HH-HHHHHHHHTTTC--GG
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------Hc--------CCCEEEEEECCHH----------HH-HHHHHHHHHcCC--CC
Confidence            45799999999999988766        32        3368999997543          11 1121111 1111  01


Q ss_pred             ceEEeecCCCccCC-CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 QCFFTGVPGSFYGR-LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~~f~~~vpgSFy~~-lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      ++  ..+.+++... ...++++|++++...+|+                           .   ...+.+..+.+  .+-
T Consensus        82 ~~--~~~~~d~~~~~~~~~~~fD~i~~~~~~~~---------------------------~---~~~~~~~~l~~--~~~  127 (177)
T 2esr_A           82 RF--TLLKMEAERAIDCLTGRFDLVFLDPPYAK---------------------------E---TIVATIEALAA--KNL  127 (177)
T ss_dssp             GE--EEECSCHHHHHHHBCSCEEEEEECCSSHH---------------------------H---HHHHHHHHHHH--TTC
T ss_pred             ce--EEEECcHHHhHHhhcCCCCEEEECCCCCc---------------------------c---hHHHHHHHHHh--CCC
Confidence            22  2234676652 234567999998433221                           0   01122222322  678


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||++++......
T Consensus       128 L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          128 LSEQVMVVCETDKTV  142 (177)
T ss_dssp             EEEEEEEEEEEETTC
T ss_pred             cCCCcEEEEEECCcc
Confidence            999999999987654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.88  E-value=5.8e-05  Score=63.04  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..++.++        +.+       |..+|+..|.... .      +........ ..+  .   .+ 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~--------~~~-------~~~~v~~vD~s~~-~------~~~a~~~~~-~~~--~---~~-  116 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLS--------IVR-------PEAHFTLLDSLGK-R------VRFLRQVQH-ELK--L---EN-  116 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHH--------HHC-------TTSEEEEEESCHH-H------HHHHHHHHH-HTT--C---SS-
T ss_pred             CCeEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEeCCHH-H------HHHHHHHHH-HcC--C---CC-
Confidence            4699999999999998877        442       5678999997653 1      111111111 111  1   12 


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                       +..+.+++.... |++++|++++..           +                          .++..+|+.=.+-|+|
T Consensus       117 -v~~~~~d~~~~~-~~~~~D~i~~~~-----------~--------------------------~~~~~~l~~~~~~L~~  157 (207)
T 1jsx_A          117 -IEPVQSRVEEFP-SEPPFDGVISRA-----------F--------------------------ASLNDMVSWCHHLPGE  157 (207)
T ss_dssp             -EEEEECCTTTSC-CCSCEEEEECSC-----------S--------------------------SSHHHHHHHHTTSEEE
T ss_pred             -eEEEecchhhCC-ccCCcCEEEEec-----------c--------------------------CCHHHHHHHHHHhcCC
Confidence             222346776543 678999999831           0                          0123444444678889


Q ss_pred             CCeEEEEe
Q 024331          211 EGRMVLTF  218 (269)
Q Consensus       211 GG~lv~~~  218 (269)
                      ||.+++..
T Consensus       158 gG~l~~~~  165 (207)
T 1jsx_A          158 QGRFYALK  165 (207)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEe
Confidence            99999974

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.87  E-value=3.6e-05  Score=72.49  Aligned_cols=105  Identities=17%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+|||+|..|+..+        +.    |    .-+|+..|...  .      + .......+..|..    ..+
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa--------~a----G----A~~V~ave~s~--~------~-~~a~~~~~~n~~~----~~i  134 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCA--------QA----G----ARRVYAVEASA--I------W-QQAREVVRFNGLE----DRV  134 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHH--------HT----T----CSEEEEEECST--T------H-HHHHHHHHHTTCT----TTE
T ss_pred             CCEEEEeCCCccHHHHHHH--------Hh----C----CCEEEEEeChH--H------H-HHHHHHHHHcCCC----ceE
Confidence            3589999999998777655        32    1    24799999642  2      1 1111122222321    122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                        .-+.|+....-+| ..+|+++|-    |+...-.                          .+..+..+|.+|.+=|+|
T Consensus       135 --~~i~~~~~~~~lp-e~~DvivsE----~~~~~l~--------------------------~e~~l~~~l~a~~r~Lkp  181 (376)
T 4hc4_A          135 --HVLPGPVETVELP-EQVDAIVSE----WMGYGLL--------------------------HESMLSSVLHARTKWLKE  181 (376)
T ss_dssp             --EEEESCTTTCCCS-SCEEEEECC----CCBTTBT--------------------------TTCSHHHHHHHHHHHEEE
T ss_pred             --EEEeeeeeeecCC-ccccEEEee----ccccccc--------------------------ccchhhhHHHHHHhhCCC
Confidence              2234777777777 579999993    3221110                          113456778888999999


Q ss_pred             CCeEEEE
Q 024331          211 EGRMVLT  217 (269)
Q Consensus       211 GG~lv~~  217 (269)
                      ||+|+-.
T Consensus       182 ~G~~iP~  188 (376)
T 4hc4_A          182 GGLLLPA  188 (376)
T ss_dssp             EEEEESC
T ss_pred             CceECCc
Confidence            9998743

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.85  E-value=9.1e-05  Score=62.91  Aligned_cols=82  Identities=17%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC---CCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS---ASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~---~~~~  126 (269)
                      ...+|+|+|||+|..+..++        +.+      .+..+|+..|+... .      +....+.... .+.   +.  
T Consensus        77 ~~~~vLDiG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~-~------~~~a~~~~~~-~~~~~~~~--  132 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFA--------RMV------GCTGKVIGIDHIKE-L------VDDSVNNVRK-DDPTLLSS--  132 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH------CTTCEEEEEESCHH-H------HHHHHHHHHH-HCTHHHHT--
T ss_pred             CCCEEEEEcCCcCHHHHHHH--------HHh------CCCcEEEEEeCCHH-H------HHHHHHHHHh-hcccccCC--
Confidence            45799999999999988776        443      14468999997543 1      1111111111 110   00  


Q ss_pred             CCc-eEEeecCCCccCCCCCCCceeeEecccccc
Q 024331          127 AGQ-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ  159 (269)
Q Consensus       127 ~~~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH  159 (269)
                       .+ .++.   ++......+.+++|++++...++
T Consensus       133 -~~v~~~~---~d~~~~~~~~~~fD~i~~~~~~~  162 (226)
T 1i1n_A          133 -GRVQLVV---GDGRMGYAEEAPYDAIHVGAAAP  162 (226)
T ss_dssp             -SSEEEEE---SCGGGCCGGGCCEEEEEECSBBS
T ss_pred             -CcEEEEE---CCcccCcccCCCcCEEEECCchH
Confidence             12 2333   56665556678999999876654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.84  E-value=6.6e-05  Score=68.07  Aligned_cols=83  Identities=11%  Similarity=0.117  Sum_probs=51.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ++.      ....+|+..|+..+ .      +....+... +.+.     .+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~-~------~~~a~~~~~-~~g~-----~~  127 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMS--------RVV------GEKGLVVSVEYSRK-I------CEIAKRNVE-RLGI-----EN  127 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTCEEEEEESCHH-H------HHHHHHHHH-HTTC-----CS
T ss_pred             CcCEEEEecCCchHHHHHHH--------Hhc------CCCCEEEEEECCHH-H------HHHHHHHHH-HcCC-----CC
Confidence            35799999999999888776        443      01367999997654 0      111111111 1121     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                        +..+-+++...+.+.+++|++++...+|++
T Consensus       128 --v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          128 --VIFVCGDGYYGVPEFSPYDVIFVTVGVDEV  157 (317)
T ss_dssp             --EEEEESCGGGCCGGGCCEEEEEECSBBSCC
T ss_pred             --eEEEECChhhccccCCCeEEEEEcCCHHHH
Confidence              222347777766678899999999888874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.84  E-value=5.5e-05  Score=65.12  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..+..++        +..       + .+|+..|.... .      +....+.+. ..+  +   .++
T Consensus        92 ~~~vLdiG~G~G~~~~~la--------~~~-------~-~~v~~vD~~~~-~------~~~a~~~~~-~~~--~---~~v  142 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALIS--------EIV-------K-TDVYTIERIPE-L------VEFAKRNLE-RAG--V---KNV  142 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHH--------HHH-------C-SCEEEEESCHH-H------HHHHHHHHH-HTT--C---CSE
T ss_pred             CCEEEEEeCCcCHHHHHHH--------HHh-------C-CEEEEEeCCHH-H------HHHHHHHHH-HcC--C---CCc
Confidence            4699999999999988776        443       2 57888886543 0      111111111 112  1   122


Q ss_pred             EEeecCCCccCCCCCCCc-eeeEecccccccc
Q 024331          131 FFTGVPGSFYGRLFPRNS-VHLFHSSYSLQWL  161 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~S-vd~~~Ss~alHWL  161 (269)
                        ..+.+++ ...+|+++ +|++++..++|++
T Consensus       143 --~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~  171 (235)
T 1jg1_A          143 --HVILGDG-SKGFPPKAPYDVIIVTAGAPKI  171 (235)
T ss_dssp             --EEEESCG-GGCCGGGCCEEEEEECSBBSSC
T ss_pred             --EEEECCc-ccCCCCCCCccEEEECCcHHHH
Confidence              2233666 44556554 9999998888763

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.83  E-value=0.00011  Score=64.84  Aligned_cols=126  Identities=14%  Similarity=0.171  Sum_probs=71.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +..       |..+|+..|.... .      +........ ..+.     .+
T Consensus       109 ~~~~vLDlG~GsG~~~~~la--------~~~-------~~~~v~~vD~s~~-~------l~~a~~n~~-~~~~-----~~  160 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALA--------SER-------PDCEIIAVDRMPD-A------VSLAQRNAQ-HLAI-----KN  160 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHH--------HHC-------TTSEEEEECSSHH-H------HHHHHHHHH-HHTC-----CS
T ss_pred             CCCEEEEecCCccHHHHHHH--------HhC-------CCCEEEEEECCHH-H------HHHHHHHHH-HcCC-----Cc
Confidence            35799999999999888776        432       5689999997654 0      111111111 1121     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccccc--CCCCCCC--CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ--VPDGLES--NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~--~P~~l~~--nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                        +..+.+++.. .+|++++|+++|+...++...  ++..+..  ....++    .        ......++..+++.=.
T Consensus       161 --v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~----~--------~~~g~~~~~~~l~~~~  225 (276)
T 2b3t_A          161 --IHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALV----A--------ADSGMADIVHIIEQSR  225 (276)
T ss_dssp             --EEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTB----C--------HHHHTHHHHHHHHHHG
T ss_pred             --eEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHc----C--------CCcHHHHHHHHHHHHH
Confidence              2223467665 466789999999866665433  0000000  000000    0        0112345667777667


Q ss_pred             hhhccCCeEEEEe
Q 024331          206 EELVAEGRMVLTF  218 (269)
Q Consensus       206 ~EL~pGG~lv~~~  218 (269)
                      +-|+|||.+++..
T Consensus       226 ~~LkpgG~l~~~~  238 (276)
T 2b3t_A          226 NALVSGGFLLLEH  238 (276)
T ss_dssp             GGEEEEEEEEEEC
T ss_pred             HhcCCCCEEEEEE
Confidence            8899999999963

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.81  E-value=0.00013  Score=63.10  Aligned_cols=76  Identities=21%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +..      .|..+|+..|+... +      +....+.+. ..+.     .+
T Consensus        93 ~~~~vldiG~G~G~~~~~l~--------~~~------~~~~~v~~~D~~~~-~------~~~a~~~~~-~~~~-----~~  145 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLA--------NIV------GPEGRVVSYEIRED-F------AKLAWENIK-WAGF-----DD  145 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEECSCHH-H------HHHHHHHHH-HHTC-----TT
T ss_pred             CCCEEEEecCCchHHHHHHH--------HHh------CCCeEEEEEecCHH-H------HHHHHHHHH-HcCC-----CC
Confidence            45799999999999988777        432      15678999988653 1      111111111 1121     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                       .+..+.+++.. .+|++++|++++
T Consensus       146 -~v~~~~~d~~~-~~~~~~~D~v~~  168 (255)
T 3mb5_A          146 -RVTIKLKDIYE-GIEEENVDHVIL  168 (255)
T ss_dssp             -TEEEECSCGGG-CCCCCSEEEEEE
T ss_pred             -ceEEEECchhh-ccCCCCcCEEEE
Confidence             12223477774 489999999998

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.81  E-value=8.9e-05  Score=68.27  Aligned_cols=78  Identities=14%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ++        +..+|+..|+. . .  + ...   .+..+ ..+..    .+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la--------~~--------g~~~V~~vD~s-~-~--~-~~a---~~~~~-~~~l~----~~  100 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAA--------QA--------GARKIYAVEAS-T-M--A-QHA---EVLVK-SNNLT----DR  100 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEECS-T-H--H-HHH---HHHHH-HTTCT----TT
T ss_pred             CcCEEEEcCCCccHHHHHHH--------hC--------CCCEEEEECCH-H-H--H-HHH---HHHHH-HcCCC----Cc
Confidence            35799999999999887665        32        33689999985 2 2  1 111   11111 12211    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ  159 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH  159 (269)
                      +  ..+.+++....+| +++|+++|...++
T Consensus       101 v--~~~~~d~~~~~~~-~~~D~Ivs~~~~~  127 (348)
T 2y1w_A          101 I--VVIPGKVEEVSLP-EQVDIIISEPMGY  127 (348)
T ss_dssp             E--EEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred             E--EEEEcchhhCCCC-CceeEEEEeCchh
Confidence            2  2234777776666 6899999976544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.81  E-value=6.2e-05  Score=64.35  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=49.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCC---CCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS---ASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~---~~~~  126 (269)
                      ...+|+|+|||+|..+..+.        +.+...+ ..+..+|+..|.... .   .+   ...+.+... +.   ..  
T Consensus        84 ~~~~VLdiG~G~G~~~~~la--------~~~~~~~-~~~~~~v~~vD~~~~-~---~~---~a~~~~~~~-~~~~~~~--  144 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFY--------RYIKAKG-VDADTRIVGIEHQAE-L---VR---RSKANLNTD-DRSMLDS--  144 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHHHHSC-CCTTCEEEEEESCHH-H---HH---HHHHHHHHH-HHHHHHH--
T ss_pred             CCCEEEEECCCccHHHHHHH--------Hhccccc-CCccCEEEEEEcCHH-H---HH---HHHHHHHhc-CccccCC--
Confidence            35799999999999988777        3321100 113458899987553 1   11   111111110 00   00  


Q ss_pred             CCceEEeecCCCccCCCCCC-CceeeEecccccccc
Q 024331          127 AGQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWL  161 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWL  161 (269)
                      ..-.++.   ++... .+|+ +++|++++..++|++
T Consensus       145 ~~v~~~~---~d~~~-~~~~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          145 GQLLIVE---GDGRK-GYPPNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             TSEEEEE---SCGGG-CCGGGCSEEEEEECSCBSSC
T ss_pred             CceEEEE---CCccc-CCCcCCCccEEEECCchHHH
Confidence            0112333   66665 4565 899999998888763

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.80  E-value=7.3e-05  Score=65.32  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..++.++        +.+      ++..+|+..|+...
T Consensus        63 ~~~~VLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~   99 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMA--------REL------PADGQLLTLEADAH   99 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEECCHH
T ss_pred             CCCEEEEecCCchHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            35799999999999998777        432      23689999998543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.78  E-value=5.6e-05  Score=66.23  Aligned_cols=126  Identities=10%  Similarity=0.029  Sum_probs=66.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ++       .+ .+|+..|+...=       +........ ..+..    .+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la--------~~-------~~-~~v~gvDi~~~~-------~~~a~~n~~-~~~~~----~~  100 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLS--------TR-------TK-AKIVGVEIQERL-------ADMAKRSVA-YNQLE----DQ  100 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHH--------TT-------CC-CEEEEECCSHHH-------HHHHHHHHH-HTTCT----TT
T ss_pred             CCCEEEEcCCchhHHHHHHH--------Hh-------cC-CcEEEEECCHHH-------HHHHHHHHH-HCCCc----cc
Confidence            46799999999999888766        32       13 389999986540       111111111 11211    12


Q ss_pred             eEEeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 CFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 ~f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      +  ..+-+++....  +|++++|+++|+-..+.....  .+.           ++....+.-......++..|++.=.+-
T Consensus       101 v--~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~l~~~~~~  165 (259)
T 3lpm_A          101 I--EIIEYDLKKITDLIPKERADIVTCNPPYFATPDT--SLK-----------NTNEHFRIARHEVMCTLEDTIRVAASL  165 (259)
T ss_dssp             E--EEECSCGGGGGGTSCTTCEEEEEECCCC------------------------------------HHHHHHHHHHHHH
T ss_pred             E--EEEECcHHHhhhhhccCCccEEEECCCCCCCccc--cCC-----------CCchHHHhhhccccCCHHHHHHHHHHH
Confidence            2  22336776644  678999999995433321000  000           000000000111235677788887888


Q ss_pred             hccCCeEEEEe
Q 024331          208 LVAEGRMVLTF  218 (269)
Q Consensus       208 L~pGG~lv~~~  218 (269)
                      |+|||++++..
T Consensus       166 LkpgG~l~~~~  176 (259)
T 3lpm_A          166 LKQGGKANFVH  176 (259)
T ss_dssp             EEEEEEEEEEE
T ss_pred             ccCCcEEEEEE
Confidence            99999999964

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.78  E-value=0.00035  Score=60.53  Aligned_cols=37  Identities=22%  Similarity=0.110  Sum_probs=27.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      .+.+|+|+|||+|..++.+++.+      +.       +..+|+..|+..
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~------~~-------~~~~v~gvDis~   87 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLH------RR-------SLRQVIASDVDP   87 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHT------GG-------GEEEEEEEESCH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHh------cc-------CCCeEEEEECCH
Confidence            46899999999998877766221      01       457899999754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.77  E-value=3.7e-05  Score=67.84  Aligned_cols=123  Identities=20%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-C---CCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-G---SASG  125 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~---~~~~  125 (269)
                      ...+|+|+|||+|..++.++        +++       |..+|+..|+-..          . .+..+++. .   .++ 
T Consensus        36 ~~~~VLDlG~G~G~~~l~la--------~~~-------~~~~v~gvDi~~~----------~-~~~a~~n~~~~~~~~l-   88 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVA--------ARL-------EKAEVTLYERSQE----------M-AEFARRSLELPDNAAF-   88 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHH--------HHC-------TTEEEEEEESSHH----------H-HHHHHHHTTSGGGTTT-
T ss_pred             CCCEEEEeCChHhHHHHHHH--------HhC-------CCCeEEEEECCHH----------H-HHHHHHHHHhhhhCCC-
Confidence            45799999999999988777        443       5689999997553          1 11122221 1   111 


Q ss_pred             CCCceEEeecCCCccCC-------CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHH-HHHHH
Q 024331          126 AAGQCFFTGVPGSFYGR-------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ-FQRDF  197 (269)
Q Consensus       126 ~~~~~f~~~vpgSFy~~-------lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q-~~~D~  197 (269)
                       ..++-  .+-+++...       .++++++|+++++--.++...          ..      .+...++.+.. ...++
T Consensus        89 -~~~v~--~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~----------~~------~~~~~~~~a~~~~~~~~  149 (260)
T 2ozv_A           89 -SARIE--VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGD----------RR------TPDALKAEAHAMTEGLF  149 (260)
T ss_dssp             -GGGEE--EEECCTTCCHHHHHHTTCCTTCEEEEEECCCC-------------------------------------CCH
T ss_pred             -cceEE--EEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCC----------CC------CcCHHHHHHhhcCcCCH
Confidence             01122  233677664       478899999999644443210          00      00011111110 11236


Q ss_pred             HHHHhhhhhhhccCCeEEEEe
Q 024331          198 SLFLKCRSEELVAEGRMVLTF  218 (269)
Q Consensus       198 ~~FL~~Ra~EL~pGG~lv~~~  218 (269)
                      ..||+.=++-|+|||++++..
T Consensus       150 ~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          150 EDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEE
Confidence            677777778899999999965

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.76  E-value=0.00015  Score=74.69  Aligned_cols=87  Identities=17%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC---CCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG---SASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~---~~~~~  126 (269)
                      ...+|+|+|||+|..++.++        ++      ..|..+|+..|+...       .+..-.+.+.....   .+.  
T Consensus       721 ~g~rVLDVGCGTG~lai~LA--------r~------g~p~a~VtGVDIS~e-------mLe~AReRLa~~lnAkr~gl--  777 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLL--------DY------PTSLQTIIGVDISPK-------GLARAAKMLHVKLNKEACNV--  777 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHT--------SS------CCCCCEEEEEESCHH-------HHHHHHHHHHHHTTTTCSSC--
T ss_pred             CCCEEEEECCCCCHHHHHHH--------Hh------CCCCCeEEEEECCHH-------HHHHHHHHhhhccchhhcCC--
Confidence            45799999999999988776        32      124579999998764       11111111111100   111  


Q ss_pred             CCceEEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331          127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS  162 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS  162 (269)
                       .  -+..+-|++....++++++|++++..++||+.
T Consensus       778 -~--nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~  810 (950)
T 3htx_A          778 -K--SATLYDGSILEFDSRLHDVDIGTCLEVIEHME  810 (950)
T ss_dssp             -S--EEEEEESCTTSCCTTSCSCCEEEEESCGGGSC
T ss_pred             -C--ceEEEECchHhCCcccCCeeEEEEeCchhhCC
Confidence             1  22233489999999999999999999999963

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.76  E-value=0.00014  Score=69.75  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++.++        +.+       +..+|+..|+...
T Consensus       242 ~g~~VLDLGCGsG~la~~LA--------~~~-------g~~~V~GVDis~~  277 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAA--------LEC-------GCALSFGCEIMDD  277 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH-------CCSEEEEEECCHH
T ss_pred             CCCEEEEeCCCcCHHHHHHH--------HHC-------CCCEEEEEeCCHH
Confidence            46799999999999998877        543       3357899988664

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.75  E-value=9.4e-05  Score=67.69  Aligned_cols=72  Identities=15%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASG  125 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~  125 (269)
                      ..+.+|+|+|||+|+.|..++        .+.       +..+|+..|+...          +. +..++   +.|..  
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~l--------A~~-------~ga~V~gIDis~~----------~l-~~Ar~~~~~~gl~--  172 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILL--------SHV-------YGMRVNVVEIEPD----------IA-ELSRKVIEGLGVD--  172 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHH--------HHT-------TCCEEEEEESSHH----------HH-HHHHHHHHHHTCC--
T ss_pred             CCcCEEEEECCCccHHHHHHH--------HHc-------cCCEEEEEECCHH----------HH-HHHHHHHHhcCCC--
Confidence            457899999999998776555        221       4578999998664          21 11221   12221  


Q ss_pred             CCCceEEeecCCCccCCCCCCCceeeEecc
Q 024331          126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       126 ~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                        +--|+.   |++..  +|++++|++++.
T Consensus       173 --~v~~v~---gDa~~--l~d~~FDvV~~~  195 (298)
T 3fpf_A          173 --GVNVIT---GDETV--IDGLEFDVLMVA  195 (298)
T ss_dssp             --SEEEEE---SCGGG--GGGCCCSEEEEC
T ss_pred             --CeEEEE---Cchhh--CCCCCcCEEEEC
Confidence              123444   66666  478999999974

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.70  E-value=4.4e-05  Score=65.33  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..++        ++         ..+|+..|+...          +. +..+++ ..     .-
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~----------~~-~~a~~~-~~-----~~   93 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFG--------PQ---------AARWAAYDFSPE----------LL-KLARAN-AP-----HA   93 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHG--------GG---------SSEEEEEESCHH----------HH-HHHHHH-CT-----TS
T ss_pred             CCCeEEEeCCCCCHHHHHHH--------Hc---------CCEEEEEECCHH----------HH-HHHHHh-CC-----Cc
Confidence            45799999999999887666        32         268899997654          21 222222 11     12


Q ss_pred             eEEeecCCCc-cCCCCC-CCceeeEecc
Q 024331          130 CFFTGVPGSF-YGRLFP-RNSVHLFHSS  155 (269)
Q Consensus       130 ~f~~~vpgSF-y~~lfP-~~Svd~~~Ss  155 (269)
                      .|+.   +++ ....++ ++++|+++|+
T Consensus        94 ~~~~---~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           94 DVYE---WNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             EEEE---CCSCSSCCTTCCCCEEEEEEE
T ss_pred             eEEE---cchhhccCCcCCCCEEEEEeC
Confidence            3444   666 456678 8999999985

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.70  E-value=7.5e-05  Score=61.09  Aligned_cols=78  Identities=12%  Similarity=-0.016  Sum_probs=46.9

Q ss_pred             CCccCCCC---CCCceeeEecccccccc-ccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 024331          137 GSFYGRLF---PRNSVHLFHSSYSLQWL-SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG  212 (269)
Q Consensus       137 gSFy~~lf---P~~Svd~~~Ss~alHWL-S~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG  212 (269)
                      +++....+   |++++|+++|++++||+ .+.                  ..+.++.               ++-|||||
T Consensus        49 ~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~------------------~~~l~~~---------------~r~LkpgG   95 (176)
T 2ld4_A           49 ENIKQLLQSAHKESSFDIILSGLVPGSTTLHS------------------AEILAEI---------------ARILRPGG   95 (176)
T ss_dssp             EEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC------------------HHHHHHH---------------HHHEEEEE
T ss_pred             echhcCccccCCCCCEeEEEECChhhhcccCH------------------HHHHHHH---------------HHHCCCCE
Confidence            44555445   89999999999999997 221                  1122222               56778999


Q ss_pred             eEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcc
Q 024331          213 RMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKS  252 (269)
Q Consensus       213 ~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~  252 (269)
                      ++++............    + .....+....|.+.|++.
T Consensus        96 ~l~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~aGfi~  130 (176)
T 2ld4_A           96 CLFLKEPVETAVDNNS----K-VKTASKLCSALTLSGLVE  130 (176)
T ss_dssp             EEEEEEEEESSSCSSS----S-SCCHHHHHHHHHHTTCEE
T ss_pred             EEEEEccccccccccc----c-cCCHHHHHHHHHHCCCcE
Confidence            9999655332211100    0 012455566677888844

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.70  E-value=0.00022  Score=61.36  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=47.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +..      .|..+|+..|.... .      +....+.+....|.     .+
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~--------~~~------~~~~~v~~~D~~~~-~------~~~a~~~~~~~~g~-----~~  149 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLA--------RAV------GEKGLVESYEARPH-H------LAQAERNVRAFWQV-----EN  149 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEEESCHH-H------HHHHHHHHHHHCCC-----CC
T ss_pred             CCCEEEEECCCcCHHHHHHH--------HHh------CCCCEEEEEeCCHH-H------HHHHHHHHHHhcCC-----CC
Confidence            45799999999999988777        432      14578999987543 1      11111111111021     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      +-  .+.+++....+|++++|++++
T Consensus       150 v~--~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A          150 VR--FHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             EE--EEESCGGGCCCCTTCEEEEEE
T ss_pred             EE--EEECchhhcCCCCCCcCEEEE
Confidence            22  223788776789999999997

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.68  E-value=7.5e-05  Score=65.76  Aligned_cols=75  Identities=19%  Similarity=0.145  Sum_probs=46.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ..+       |..+|+..|.... .      +....+ ..++.+.     .+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la--------~~~-------~~~~v~~vD~s~~-~------~~~a~~-~~~~~~l-----~~  131 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLK--------IVR-------PELELVLVDATRK-K------VAFVER-AIEVLGL-----KG  131 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHH--------HHC-------TTCEEEEEESCHH-H------HHHHHH-HHHHHTC-----SS
T ss_pred             CCCEEEEEcCCCCHHHHHHH--------HHC-------CCCEEEEEECCHH-H------HHHHHH-HHHHhCC-----Cc
Confidence            46799999999999998877        432       6789999997654 1      111111 1112222     22


Q ss_pred             eEEeecCCCccCCCC---CCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLF---PRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf---P~~Svd~~~S  154 (269)
                        +..+.++......   .++++|+++|
T Consensus       132 --v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A          132 --ARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             --EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             --eEEEECcHHHhhcccccCCCceEEEE
Confidence              2223466666443   3589999998

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.67  E-value=6e-05  Score=61.59  Aligned_cols=110  Identities=9%  Similarity=-0.129  Sum_probs=62.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ++        +..+|+..|+... .      +......... .+..    .+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~--------~~--------~~~~v~~vD~~~~-~------~~~a~~~~~~-~~~~----~~   95 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAV--------SR--------GMDKSICIEKNFA-A------LKVIKENIAI-TKEP----EK   95 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHH--------HT--------TCSEEEEEESCHH-H------HHHHHHHHHH-HTCG----GG
T ss_pred             CCCCEEEeCCccCHHHHHHH--------Hc--------CCCEEEEEECCHH-H------HHHHHHHHHH-hCCC----cc
Confidence            45799999999999988765        32        2368999997543 1      1111111111 1110    12


Q ss_pred             -eEEeecCCCccCCC----CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          130 -CFFTGVPGSFYGRL----FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 -~f~~~vpgSFy~~l----fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                       .++.   +++...+    ++++++|++++...+|+-                   ..+.+           +. .+. .
T Consensus        96 ~~~~~---~d~~~~~~~~~~~~~~fD~i~~~~~~~~~-------------------~~~~~-----------~~-~l~-~  140 (187)
T 2fhp_A           96 FEVRK---MDANRALEQFYEEKLQFDLVLLDPPYAKQ-------------------EIVSQ-----------LE-KML-E  140 (187)
T ss_dssp             EEEEE---SCHHHHHHHHHHTTCCEEEEEECCCGGGC-------------------CHHHH-----------HH-HHH-H
T ss_pred             eEEEE---CcHHHHHHHHHhcCCCCCEEEECCCCCch-------------------hHHHH-----------HH-HHH-H
Confidence             2333   6765522    237899999986443320                   01111           11 122 2


Q ss_pred             hhhhccCCeEEEEecccC
Q 024331          205 SEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~~  222 (269)
                      .+-|+|||.+++......
T Consensus       141 ~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          141 RQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             TTCEEEEEEEEEEEETTC
T ss_pred             hcccCCCCEEEEEeCCcc
Confidence            677899999999876654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.67  E-value=0.0002  Score=63.25  Aligned_cols=75  Identities=9%  Similarity=0.048  Sum_probs=46.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..++.++        +..      .|..+|+..|+... .      +....+.+. .. |.     .
T Consensus       110 ~~~~VLD~G~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~-~------~~~a~~~~~-~~~g~-----~  162 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYIL--------YAL------NGKGTLTVVERDED-N------LKKAMDNLS-EFYDI-----G  162 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------TTSSEEEEECSCHH-H------HHHHHHHHH-TTSCC-----T
T ss_pred             CcCEEEEecCCCCHHHHHHH--------HHc------CCCCEEEEEECCHH-H------HHHHHHHHH-hcCCC-----C
Confidence            45799999999999888777        331      14578999997553 0      111111111 11 21     1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEec
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      ++-  .+.+++.. .+|++++|++++
T Consensus       163 ~v~--~~~~d~~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          163 NVR--TSRSDIAD-FISDQMYDAVIA  185 (275)
T ss_dssp             TEE--EECSCTTT-CCCSCCEEEEEE
T ss_pred             cEE--EEECchhc-cCcCCCccEEEE
Confidence            222  23377776 778899999998

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.67  E-value=6.7e-05  Score=63.43  Aligned_cols=34  Identities=15%  Similarity=-0.032  Sum_probs=25.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|..++.++        .+.        ..+|+..|+...
T Consensus        54 ~~~vLDlGcGtG~~~~~~~--------~~~--------~~~v~gvD~s~~   87 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEAL--------SRQ--------AKKVTFLELDKT   87 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHH--------HTT--------CSEEEEECSCHH
T ss_pred             CCeEEEcCCccCHHHHHHH--------Hcc--------CCEEEEEECCHH
Confidence            4699999999999988755        321        147999997654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.65  E-value=4.5e-06  Score=71.85  Aligned_cols=86  Identities=17%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +.         ..+|+..|+...       .+......+. ..+..-   .-
T Consensus        78 ~~~~vLD~gcG~G~~~~~la--------~~---------~~~v~~vD~s~~-------~~~~a~~~~~-~~~~~~---~~  129 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFA--------LT---------GMRVIAIDIDPV-------KIALARNNAE-VYGIAD---KI  129 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHH--------HT---------TCEEEEEESCHH-------HHHHHHHHHH-HTTCGG---GE
T ss_pred             CCCEEEECccccCHHHHHHH--------Hc---------CCEEEEEECCHH-------HHHHHHHHHH-HcCCCc---Ce
Confidence            35799999999999998877        32         268899987654       0111111111 111100   11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCC
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDG  167 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~  167 (269)
                      .|+.   +++...+ +++++|++++...+||.......
T Consensus       130 ~~~~---~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~  163 (241)
T 3gdh_A          130 EFIC---GDFLLLA-SFLKADVVFLSPPWGGPDYATAE  163 (241)
T ss_dssp             EEEE---SCHHHHG-GGCCCSEEEECCCCSSGGGGGSS
T ss_pred             EEEE---CChHHhc-ccCCCCEEEECCCcCCcchhhhH
Confidence            3333   7777655 78899999999999998765543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.65  E-value=9.9e-05  Score=65.98  Aligned_cols=154  Identities=14%  Similarity=0.051  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHH
Q 024331           33 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF  112 (269)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~  112 (269)
                      +|.++.--..+...  +.+-+|+|+|||+|+.++..+                  |...++..|+-..        +=.+
T Consensus        90 Lp~ld~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~------------------~~~~y~a~DId~~--------~i~~  141 (253)
T 3frh_A           90 LAELDTLYDFIFSA--ETPRRVLDIACGLNPLALYER------------------GIASVWGCDIHQG--------LGDV  141 (253)
T ss_dssp             GGGHHHHHHHHTSS--CCCSEEEEETCTTTHHHHHHT------------------TCSEEEEEESBHH--------HHHH
T ss_pred             hhhHHHHHHHHhcC--CCCCeEEEecCCccHHHHHhc------------------cCCeEEEEeCCHH--------HHHH
Confidence            45555444443332  457899999999998877544                  4689999998765        1111


Q ss_pred             HHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHH
Q 024331          113 QKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ  192 (269)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q  192 (269)
                      ....-...|.     +--|..   .++...++|. +.|++.++-++|-|.+-....                ..      
T Consensus       142 ar~~~~~~g~-----~~~~~v---~D~~~~~~~~-~~DvvLllk~lh~LE~q~~~~----------------~~------  190 (253)
T 3frh_A          142 ITPFAREKDW-----DFTFAL---QDVLCAPPAE-AGDLALIFKLLPLLEREQAGS----------------AM------  190 (253)
T ss_dssp             HHHHHHHTTC-----EEEEEE---CCTTTSCCCC-BCSEEEEESCHHHHHHHSTTH----------------HH------
T ss_pred             HHHHHHhcCC-----CceEEE---eecccCCCCC-CcchHHHHHHHHHhhhhchhh----------------HH------
Confidence            1111112222     123333   6777777666 999999999999997755421                11      


Q ss_pred             HHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceeccc
Q 024331          193 FQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLN  263 (269)
Q Consensus       193 ~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~  263 (269)
                            ++|.    +|+++ .++++++.+.=.++.-    .|.+.=...|...+.+..   +.++.|.+++
T Consensus       191 ------~ll~----aL~~~-~vvVsfPtksl~Gr~~----gm~~~Y~~~~e~~~~~~~---~~~~~~~~~n  243 (253)
T 3frh_A          191 ------ALLQ----SLNTP-RMAVSFPTRSLGGRGK----GMEANYAAWFEGGLPAEF---EIEDKKTIGT  243 (253)
T ss_dssp             ------HHHH----HCBCS-EEEEEEECC---------------CHHHHHHHHSCTTE---EEEEEEEETT
T ss_pred             ------HHHH----HhcCC-CEEEEcChHHhcCCCc----chhhHHHHHHHHHhhccc---hhhhheecCc
Confidence                  2222    67776 6778888554333321    123445566777777766   7777777765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.63  E-value=0.00034  Score=61.24  Aligned_cols=79  Identities=16%  Similarity=0.136  Sum_probs=48.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +..      .|..+|+..|+... .      +....+......|.-.   .+
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~--------~~~------~~~~~v~~vD~~~~-~------~~~a~~~~~~~~g~~~---~~  154 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLL--------RAV------GPAGQVISYEQRAD-H------AEHARRNVSGCYGQPP---DN  154 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEECSCHH-H------HHHHHHHHHHHHTSCC---TT
T ss_pred             CCCEEEEEcccccHHHHHHH--------HHh------CCCCEEEEEeCCHH-H------HHHHHHHHHHhcCCCC---Cc
Confidence            35699999999999988777        432      14578999987443 1      1111111111101000   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      +  ..+.+++....++++++|++++
T Consensus       155 v--~~~~~d~~~~~~~~~~~D~v~~  177 (280)
T 1i9g_A          155 W--RLVVSDLADSELPDGSVDRAVL  177 (280)
T ss_dssp             E--EEECSCGGGCCCCTTCEEEEEE
T ss_pred             E--EEEECchHhcCCCCCceeEEEE
Confidence            2  2234788888888999999998

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.62  E-value=0.00095  Score=56.63  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=27.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ...+|+|+|||+|..++.++        ++.      .|..+|+..|...
T Consensus        73 ~~~~vLDlG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~  108 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVS--------DIV------GWEGKIFGIEFSP  108 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHH--------HHH------CTTSEEEEEESCH
T ss_pred             CCCEEEEEeccCCHHHHHHH--------HHh------CCCeEEEEEECCH
Confidence            45699999999999998877        443      1346788888654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.60  E-value=8.6e-05  Score=63.26  Aligned_cols=37  Identities=14%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..|+.++        +.+      ++..+|+..|+...
T Consensus        58 ~~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~   94 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMA--------RLL------QPGARLLTMEINPD   94 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HhC------CCCCEEEEEeCChH
Confidence            35799999999999999877        321      24678999998654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.60  E-value=0.00011  Score=63.54  Aligned_cols=36  Identities=19%  Similarity=0.004  Sum_probs=29.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..-+|+|+|||+|..++.++        ++       .|..+|+..|+...
T Consensus        24 ~~~~vLDiGCG~G~~~~~la--------~~-------~~~~~v~GvD~s~~   59 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLA--------IN-------DQNTFYIGIDPVKE   59 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHH--------HT-------CTTEEEEEECSCCG
T ss_pred             CCCEEEEEeccCcHHHHHHH--------Hh-------CCCCEEEEEeCCHH
Confidence            45799999999999888776        33       26799999999844

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.60  E-value=0.00023  Score=62.49  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=44.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.+.        +.    +   +  +|+..|+...=       +....+.... .+  .    .
T Consensus       120 ~~~~VLDiGcG~G~l~~~la--------~~----g---~--~v~gvDi~~~~-------v~~a~~n~~~-~~--~----~  168 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAE--------KL----G---G--KALGVDIDPMV-------LPQAEANAKR-NG--V----R  168 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT----T---C--EEEEEESCGGG-------HHHHHHHHHH-TT--C----C
T ss_pred             CCCEEEEecCCCcHHHHHHH--------Hh----C---C--eEEEEECCHHH-------HHHHHHHHHH-cC--C----c
Confidence            35799999999998877654        32    1   2  89999986541       1111111111 11  1    1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ  159 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH  159 (269)
                        +..+.+++... +|++++|+++++...|
T Consensus       169 --v~~~~~d~~~~-~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          169 --PRFLEGSLEAA-LPFGPFDLLVANLYAE  195 (254)
T ss_dssp             --CEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred             --EEEEECChhhc-CcCCCCCEEEECCcHH
Confidence              22223565553 6788999999864433

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.60  E-value=0.00011  Score=62.21  Aligned_cols=77  Identities=10%  Similarity=-0.023  Sum_probs=44.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      ..+|+|+|||+|..++.++        ++.        .-+|+..|+...          +. +.++++. ..+.  ..-
T Consensus        55 ~~~vLDlgcG~G~~~~~l~--------~~~--------~~~V~~vD~s~~----------~l-~~a~~~~~~~~~--~~v  105 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEAL--------SRY--------AAGATLIEMDRA----------VS-QQLIKNLATLKA--GNA  105 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHH--------HTT--------CSEEEEECSCHH----------HH-HHHHHHHHHTTC--CSE
T ss_pred             CCeEEEeCCCcCHHHHHHH--------hcC--------CCEEEEEECCHH----------HH-HHHHHHHHHcCC--CcE
Confidence            4699999999999988765        321        137999997654          21 1121111 0111  011


Q ss_pred             eEEeecCCCccC-CCCCCCceeeEecccccc
Q 024331          130 CFFTGVPGSFYG-RLFPRNSVHLFHSSYSLQ  159 (269)
Q Consensus       130 ~f~~~vpgSFy~-~lfP~~Svd~~~Ss~alH  159 (269)
                      .|+   -+++.. ..++++++|++++...+|
T Consensus       106 ~~~---~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A          106 RVV---NSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             EEE---CSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             EEE---ECCHHHHHhhcCCCCCEEEECCCCC
Confidence            233   367655 344678999999854433

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.59  E-value=0.00035  Score=60.61  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=29.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..++.++        +..       |..+|+..|....
T Consensus        49 ~~~~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gvD~s~~   84 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLS--------PAF-------PEDLILGMEIRVQ   84 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHH--------HHS-------TTSEEEEEESCHH
T ss_pred             CCCEEEEEcCCCCHHHHHHH--------HhC-------CCCCEEEEEcCHH
Confidence            45799999999999998877        542       5678999997654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.58  E-value=0.00011  Score=58.97  Aligned_cols=34  Identities=18%  Similarity=-0.004  Sum_probs=25.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..++.++        ++.       +  +|+..|+...
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~--------~~~-------~--~v~~vD~~~~   74 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAA--------SEG-------W--EAVLVEKDPE   74 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHH--------HTT-------C--EEEEECCCHH
T ss_pred             CCCeEEEeCCCcCHHHHHHH--------HCC-------C--eEEEEeCCHH
Confidence            35799999999999888776        331       3  3899997543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.57  E-value=0.00015  Score=65.70  Aligned_cols=149  Identities=13%  Similarity=0.046  Sum_probs=76.0

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHH-hhHHHHHHHHHhcCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFR-SLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~-~l~~~~~~~~~~~~~~~~~~  127 (269)
                      +++.+|+|+|||+|..+..++        +.       .+..+|+..|+... .-.+.+ .++.    +......     
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~-~i~~a~~~~~~----~~~~~~~-----  148 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVL--------RH-------GTVEHCDLVDIDGE-VMEQSKQHFPQ----ISRSLAD-----  148 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHH--------TC-------TTCCEEEEEESCHH-HHHHHHHHCHH----HHGGGGC-----
T ss_pred             CCCCeEEEEcCCCCHHHHHHH--------hC-------CCCCEEEEEECCHH-HHHHHHHHhHH----hhcccCC-----
Confidence            456899999999999877665        32       24568999997653 101111 0110    0111101     


Q ss_pred             CceEEeecCCCccCCCC--CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          128 GQCFFTGVPGSFYGRLF--PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lf--P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      +++-+  +-+++...+.  +++++|++++....++.   |.      ..             .|..       .||+.=.
T Consensus       149 ~~v~~--~~~D~~~~~~~~~~~~fDvIi~d~~~~~~---~~------~~-------------l~~~-------~~l~~~~  197 (304)
T 3bwc_A          149 PRATV--RVGDGLAFVRQTPDNTYDVVIIDTTDPAG---PA------SK-------------LFGE-------AFYKDVL  197 (304)
T ss_dssp             TTEEE--EESCHHHHHHSSCTTCEEEEEEECC-------------------------------CCH-------HHHHHHH
T ss_pred             CcEEE--EECcHHHHHHhccCCceeEEEECCCCccc---cc------hh-------------hhHH-------HHHHHHH
Confidence            12211  2366655444  58899999996655541   10      00             1111       2222224


Q ss_pred             hhhccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecccc
Q 024331          206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNY  264 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~  264 (269)
                      +-|+|||+|++.....     ...     -.......+.|.+.|. +.-.+....+|.|
T Consensus       198 ~~LkpgG~lv~~~~~~-----~~~-----~~~~~~~~~~l~~~GF-~~v~~~~~~vP~y  245 (304)
T 3bwc_A          198 RILKPDGICCNQGESI-----WLD-----LELIEKMSRFIRETGF-ASVQYALMHVPTY  245 (304)
T ss_dssp             HHEEEEEEEEEEECCT-----TTC-----HHHHHHHHHHHHHHTC-SEEEEEECCCTTS
T ss_pred             HhcCCCcEEEEecCCc-----ccc-----hHHHHHHHHHHHhCCC-CcEEEEEeecccc
Confidence            5677999999974321     111     1235555666666775 2233344556765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.49  E-value=0.00023  Score=60.25  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=28.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..++.++        +.+      ++..+|+..|+...
T Consensus        58 ~~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~   94 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLA--------RGL------SSGGRVVTLEASEK   94 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHH--------TTC------CSSCEEEEEESCHH
T ss_pred             CCCEEEEecCCccHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            35799999999999998877        432      23679999997543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.49  E-value=0.00021  Score=61.13  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|..++.++        +.+       |..+|+..|....
T Consensus        55 ~~~vLdiG~G~G~~~~~la--------~~~-------~~~~v~~vD~~~~   89 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMA--------QAL-------PEATIVSIERDER   89 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHH--------HHC-------TTCEEEEECCCHH
T ss_pred             CCEEEEecCCCcHHHHHHH--------HHC-------CCCEEEEEECCHH
Confidence            5699999999999988777        442       3578999997543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.49  E-value=0.0012  Score=55.79  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=26.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++.++        ++         ..+|+..|+...
T Consensus        55 ~~~~vLDlGcG~G~~~~~la--------~~---------~~~v~~vD~s~~   88 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWC--------LA---------GGRAITIEPRAD   88 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHH
T ss_pred             CCCEEEEecCCCCHHHHHHH--------Hc---------CCEEEEEeCCHH
Confidence            45799999999999988776        32         267889987553

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.48  E-value=0.00057  Score=61.37  Aligned_cols=112  Identities=15%  Similarity=0.057  Sum_probs=61.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|..++        ++          .+|+..|+..-        +....+  ........+ .+-
T Consensus        82 ~g~~VLDlGcGtG~~s~~la--------~~----------~~V~gVD~s~m--------~~~a~~--~~~~~~~~~-~~v  132 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAA--------SQ----------PNVREVKAYTL--------GTSGHE--KPRLVETFG-WNL  132 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHH--------TS----------TTEEEEEEECC--------CCTTSC--CCCCCCCTT-GGG
T ss_pred             CCCEEEEeccCCCHHHHHHH--------Hc----------CCEEEEECchh--------hhhhhh--chhhhhhcC-CCe
Confidence            45799999999999888766        21          46777777542        000000  000000000 011


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+. --+++..  +|++++|+++|..+ ++...                    ...+.+.     .+. .|+.-.+-|+
T Consensus       133 ~~~~-~~~D~~~--l~~~~fD~Vvsd~~-~~~~~--------------------~~~d~~~-----~l~-~L~~~~r~Lk  182 (276)
T 2wa2_A          133 ITFK-SKVDVTK--MEPFQADTVLCDIG-ESNPT--------------------AAVEASR-----TLT-VLNVISRWLE  182 (276)
T ss_dssp             EEEE-CSCCGGG--CCCCCCSEEEECCC-CCCSC--------------------HHHHHHH-----HHH-HHHHHHHHHH
T ss_pred             EEEe-ccCcHhh--CCCCCcCEEEECCC-cCCCc--------------------hhhhHHH-----HHH-HHHHHHHHhc
Confidence            3331 1367766  57899999999766 54210                    0011110     111 5555567788


Q ss_pred             cCC--eEEEEecc
Q 024331          210 AEG--RMVLTFLG  220 (269)
Q Consensus       210 pGG--~lv~~~~g  220 (269)
                      |||  .+++..+.
T Consensus       183 pGG~~~~v~~~~~  195 (276)
T 2wa2_A          183 YNQGCGFCVKVLN  195 (276)
T ss_dssp             HSTTCEEEEEESC
T ss_pred             cCCCcEEEEEeCC
Confidence            999  99987765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.48  E-value=0.00048  Score=60.67  Aligned_cols=76  Identities=18%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ++.      .|..+|+..|+... .      +....+.+. ..+.    ..+
T Consensus       112 ~~~~VLDiG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~-~------~~~a~~~~~-~~~~----~~~  165 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLA--------RAV------GSSGKVFAYEKREE-F------AKLAESNLT-KWGL----IER  165 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHT------TTTCEEEEECCCHH-H------HHHHHHHHH-HTTC----GGG
T ss_pred             CCCEEEEECCcCCHHHHHHH--------HHh------CCCcEEEEEECCHH-H------HHHHHHHHH-HcCC----CCC
Confidence            35699999999999888776        431      14578999997543 1      111111111 1111    012


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                        +..+.+++... +|++++|++++
T Consensus       166 --v~~~~~d~~~~-~~~~~~D~V~~  187 (277)
T 1o54_A          166 --VTIKVRDISEG-FDEKDVDALFL  187 (277)
T ss_dssp             --EEEECCCGGGC-CSCCSEEEEEE
T ss_pred             --EEEEECCHHHc-ccCCccCEEEE
Confidence              22234777765 88899999998

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.47  E-value=0.00035  Score=56.68  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        +.        - .+|+..|.... .      +....+.+. ..+..    .+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~--------~~--------~-~~v~~~D~~~~-~------~~~a~~~~~-~~~~~----~~   83 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELA--------GR--------V-RRVYAIDRNPE-A------ISTTEMNLQ-RHGLG----DN   83 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------TT--------S-SEEEEEESCHH-H------HHHHHHHHH-HTTCC----TT
T ss_pred             CCCEEEEECCCCCHHHHHHH--------Hh--------c-CEEEEEECCHH-H------HHHHHHHHH-HcCCC----cc
Confidence            45799999999999887666        32        1 57888887443 0      111111111 11110    12


Q ss_pred             -eEEeecCCCccCCCCCC-CceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 -CFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 -~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       .++.   +++.. .+|+ +++|++++...+|+                                    +..+|+.=.+-
T Consensus        84 ~~~~~---~d~~~-~~~~~~~~D~v~~~~~~~~------------------------------------~~~~l~~~~~~  123 (192)
T 1l3i_A           84 VTLME---GDAPE-ALCKIPDIDIAVVGGSGGE------------------------------------LQEILRIIKDK  123 (192)
T ss_dssp             EEEEE---SCHHH-HHTTSCCEEEEEESCCTTC------------------------------------HHHHHHHHHHT
T ss_pred             eEEEe---cCHHH-hcccCCCCCEEEECCchHH------------------------------------HHHHHHHHHHh
Confidence             2322   56555 4555 68999998654432                                    12233333567


Q ss_pred             hccCCeEEEEecc
Q 024331          208 LVAEGRMVLTFLG  220 (269)
Q Consensus       208 L~pGG~lv~~~~g  220 (269)
                      |+|||.+++....
T Consensus       124 l~~gG~l~~~~~~  136 (192)
T 1l3i_A          124 LKPGGRIIVTAIL  136 (192)
T ss_dssp             EEEEEEEEEEECB
T ss_pred             cCCCcEEEEEecC
Confidence            8899999997653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.46  E-value=0.00081  Score=56.64  Aligned_cols=107  Identities=15%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|..|..++        ++         ..+|+..|+....      .+            .     +
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la--------~~---------~~~V~gvD~~~~~------~~------------~-----~   63 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLN--------SL---------ARKIISIDLQEME------EI------------A-----G   63 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHT--------TT---------CSEEEEEESSCCC------CC------------T-----T
T ss_pred             CCCCEEEEEeecCCHHHHHHH--------Hc---------CCcEEEEeccccc------cC------------C-----C
Confidence            346899999999999888776        22         3688999986541      00            0     1


Q ss_pred             ceEEeecCCCccCCCC--------C---CCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHH
Q 024331          129 QCFFTGVPGSFYGRLF--------P---RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDF  197 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lf--------P---~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~  197 (269)
                      -.|+.   |++.....        +   .+++|+++|..+..+        .   |.        . ....+  ......
T Consensus        64 v~~~~---~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~--------~---g~--------~-~~d~~--~~~~l~  118 (191)
T 3dou_A           64 VRFIR---CDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKV--------S---GI--------P-SRDHA--VSYQIG  118 (191)
T ss_dssp             CEEEE---CCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCC--------C---SC--------H-HHHHH--HHHHHH
T ss_pred             eEEEE---ccccCHHHHHHHHHHhhcccCCcceEEecCCCcCC--------C---CC--------c-ccCHH--HHHHHH
Confidence            13433   67666432        2   148999999543222        1   00        0 01111  122334


Q ss_pred             HHHHhhhhhhhccCCeEEEEecc
Q 024331          198 SLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       198 ~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                      ...|+.=.+-|+|||.|++.++.
T Consensus       119 ~~~l~~a~~~LkpGG~lv~k~~~  141 (191)
T 3dou_A          119 QRVMEIAVRYLRNGGNVLLKQFQ  141 (191)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHccCCCEEEEEEcC
Confidence            45555556788899999987763

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.45  E-value=0.00071  Score=60.32  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|..++        ++          .+|+..|+..-        +....+  ........+ .+-
T Consensus        74 ~g~~VLDlGcGtG~~s~~la--------~~----------~~V~gvD~s~m--------~~~a~~--~~~~~~~~~-~~v  124 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAA--------SR----------PHVMDVRAYTL--------GVGGHE--VPRITESYG-WNI  124 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHH--------TS----------TTEEEEEEECC--------CCSSCC--CCCCCCBTT-GGG
T ss_pred             CCCEEEEeCcCCCHHHHHHH--------Hc----------CcEEEEECchh--------hhhhhh--hhhhhhccC-CCe
Confidence            45799999999999887766        21          45777776542        000000  000000000 011


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+. --+++..  +|++++|+++|..+ |....                   + ..+..     +.+. .|+.-.+-|+
T Consensus       125 ~~~~-~~~D~~~--l~~~~fD~V~sd~~-~~~~~-------------------~-~~d~~-----~~l~-~L~~~~r~Lk  174 (265)
T 2oxt_A          125 VKFK-SRVDIHT--LPVERTDVIMCDVG-ESSPK-------------------W-SVESE-----RTIK-ILELLEKWKV  174 (265)
T ss_dssp             EEEE-CSCCTTT--SCCCCCSEEEECCC-CCCSC-------------------H-HHHHH-----HHHH-HHHHHHHHHH
T ss_pred             EEEe-cccCHhH--CCCCCCcEEEEeCc-ccCCc-------------------c-chhHH-----HHHH-HHHHHHHHhc
Confidence            3431 0367766  57889999999766 44110                   0 00111     0111 5555567788


Q ss_pred             cCC--eEEEEecc
Q 024331          210 AEG--RMVLTFLG  220 (269)
Q Consensus       210 pGG--~lv~~~~g  220 (269)
                      |||  .+++..+.
T Consensus       175 pGG~~~fv~kv~~  187 (265)
T 2oxt_A          175 KNPSADFVVKVLC  187 (265)
T ss_dssp             HCTTCEEEEEESC
T ss_pred             cCCCeEEEEEeCC
Confidence            999  99997765

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.41  E-value=0.00054  Score=62.23  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             CCceEEEeecCCCCccc----HHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCC
Q 024331           49 PTKVAIADLGCSSGPNT----LLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSAS  124 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns----~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~  124 (269)
                      +...+|+|+|||+|.+.    ..+.        ++.      ++..+|+..|+...        ++              
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs~~~a--------~~~------~~~~~V~gvDis~~--------v~--------------  105 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGTAVLR--------QWL------PTGTLLVDSDLNDF--------VS--------------  105 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHH--------HHS------CTTCEEEEEESSCC--------BC--------------
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHH--------HHc------CCCCEEEEEECCCC--------CC--------------
Confidence            34579999999885543    2222        332      23578999999775        11              


Q ss_pred             CCCCceE-EeecCCCccCCCCCCCceeeEeccccccc
Q 024331          125 GAAGQCF-FTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       125 ~~~~~~f-~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                         +-.| +.   |++....++ +++|+++|..+.+|
T Consensus       106 ---~v~~~i~---gD~~~~~~~-~~fD~Vvsn~~~~~  135 (290)
T 2xyq_A          106 ---DADSTLI---GDCATVHTA-NKWDLIISDMYDPR  135 (290)
T ss_dssp             ---SSSEEEE---SCGGGCCCS-SCEEEEEECCCCCC
T ss_pred             ---CCEEEEE---CccccCCcc-CcccEEEEcCCccc
Confidence               1134 44   777776555 78999999866554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.40  E-value=0.00064  Score=58.47  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..++.++        +.       .|..+|+..|+...
T Consensus        71 ~~~~vLDiG~G~G~~~~~la--------~~-------~~~~~v~~vD~~~~  106 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFA--------SI-------SDDIHVTTIERNET  106 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHH--------TT-------CTTCEEEEEECCHH
T ss_pred             CCCEEEEEeCchhHHHHHHH--------Hh-------CCCCEEEEEECCHH
Confidence            35799999999999998777        32       24689999998553

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.39  E-value=0.00037  Score=60.15  Aligned_cols=35  Identities=9%  Similarity=-0.032  Sum_probs=27.8

Q ss_pred             eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        52 ~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .+|+|+|||+|..|+.++        +.+      +|..+|+..|+...
T Consensus        58 ~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~   92 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYIL--------NGL------ADNTTLTCIDPESE   92 (221)
T ss_dssp             CEEEEESTTHHHHHHHHH--------HHS------CTTSEEEEECSCHH
T ss_pred             CCEEEEcCCchHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            499999999999999887        442      24688999998654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.36  E-value=0.00059  Score=62.57  Aligned_cols=115  Identities=17%  Similarity=0.077  Sum_probs=68.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..++.++        ...      .|..+|+..|+...          +. +.++++. ..++  ..
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a--------~~~------~~~~~v~g~Di~~~----------~i-~~a~~n~~~~g~--~~  255 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAA--------STL------GPTSPVYAGDLDEK----------RL-GLAREAALASGL--SW  255 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHH--------HHH------CTTSCEEEEESCHH----------HH-HHHHHHHHHTTC--TT
T ss_pred             CCCEEEeCCCCcCHHHHHHH--------Hhh------CCCceEEEEECCHH----------HH-HHHHHHHHHcCC--Cc
Confidence            35789999999999888776        332      14578999998654          11 1122111 0111  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      -.|..   +++.....|.+++|++++.--.+|-             +    ....        ........+++.=.+-|
T Consensus       256 i~~~~---~D~~~~~~~~~~~D~Ii~npPyg~r-------------~----~~~~--------~~~~~~~~~~~~~~~~L  307 (354)
T 3tma_A          256 IRFLR---ADARHLPRFFPEVDRILANPPHGLR-------------L----GRKE--------GLFHLYWDFLRGALALL  307 (354)
T ss_dssp             CEEEE---CCGGGGGGTCCCCSEEEECCCSCC---------------------CH--------HHHHHHHHHHHHHHHTS
T ss_pred             eEEEe---CChhhCccccCCCCEEEECCCCcCc-------------c----CCcc--------cHHHHHHHHHHHHHHhc
Confidence            13433   8888888888889999994333220             0    0011        12233455666556778


Q ss_pred             ccCCeEEEEec
Q 024331          209 VAEGRMVLTFL  219 (269)
Q Consensus       209 ~pGG~lv~~~~  219 (269)
                      +|||++++.+.
T Consensus       308 kpgG~l~i~t~  318 (354)
T 3tma_A          308 PPGGRVALLTL  318 (354)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCcEEEEEeC
Confidence            89999999864

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.35  E-value=0.00042  Score=60.54  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=29.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..|+.++        +.+      ++..+|+..|+...
T Consensus        60 ~~~~VLDiG~G~G~~t~~la--------~~~------~~~~~v~~iD~~~~   96 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMS--------LAL------PDDGQVITCDINEG   96 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHH--------HTS------CTTCEEEEEECCCS
T ss_pred             CcCEEEEeeCCcCHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            35799999999999999877        432      23689999998765

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.35  E-value=0.00058  Score=65.98  Aligned_cols=76  Identities=14%  Similarity=0.278  Sum_probs=44.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +.        +..+|+..|+..  .   .+..   .+... +.+..    .+
T Consensus       158 ~~~~VLDiGcGtG~la~~la--------~~--------~~~~V~gvD~s~--~---l~~A---~~~~~-~~gl~----~~  208 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAA--------QA--------GARKIYAVEAST--M---AQHA---EVLVK-SNNLT----DR  208 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHH--------HT--------TCSEEEEEECHH--H---HHHH---HHHHH-HTTCT----TT
T ss_pred             CCCEEEEecCcccHHHHHHH--------Hc--------CCCEEEEEEcHH--H---HHHH---HHHHH-HcCCC----Cc
Confidence            35799999999998776554        32        346899999742  1   1111   11111 12211    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYS  157 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~a  157 (269)
                      +  ..+.+++....+| +++|+++|...
T Consensus       209 v--~~~~~d~~~~~~~-~~fD~Ivs~~~  233 (480)
T 3b3j_A          209 I--VVIPGKVEEVSLP-EQVDIIISEPM  233 (480)
T ss_dssp             E--EEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             E--EEEECchhhCccC-CCeEEEEEeCc
Confidence            2  2234777775566 58999999655

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.35  E-value=0.00087  Score=59.59  Aligned_cols=72  Identities=8%  Similarity=-0.058  Sum_probs=44.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        +..       +. +|+..|+...       .+....+... ..+..    ..+
T Consensus       126 ~~~VLDlgcG~G~~~~~la--------~~~-------~~-~V~~vD~s~~-------~~~~a~~n~~-~n~~~----~~v  177 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIA--------VYG-------KA-KVIAIEKDPY-------TFKFLVENIH-LNKVE----DRM  177 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHH--------HHT-------CC-EEEEECCCHH-------HHHHHHHHHH-HTTCT----TTE
T ss_pred             CCEEEEecccCCHHHHHHH--------HhC-------CC-EEEEEECCHH-------HHHHHHHHHH-HcCCC----ceE
Confidence            5799999999999999887        442       22 7999998654       0111111111 11211    123


Q ss_pred             -EEeecCCCccCCCCCCCceeeEec
Q 024331          131 -FFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       131 -f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                       |+.   +++...+. ++++|++++
T Consensus       178 ~~~~---~D~~~~~~-~~~fD~Vi~  198 (278)
T 2frn_A          178 SAYN---MDNRDFPG-ENIADRILM  198 (278)
T ss_dssp             EEEC---SCTTTCCC-CSCEEEEEE
T ss_pred             EEEE---CCHHHhcc-cCCccEEEE
Confidence             444   77777665 789999988

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.33  E-value=0.0011  Score=53.34  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +         +..+|+..|.... .      +....+... ..+.     .+
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~--------~---------~~~~v~~vD~~~~-~------~~~a~~~~~-~~~~-----~~   84 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIA--------K---------RCKFVYAIDYLDG-A------IEVTKQNLA-KFNI-----KN   84 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHH--------T---------TSSEEEEEECSHH-H------HHHHHHHHH-HTTC-----CS
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------h---------cCCeEEEEeCCHH-H------HHHHHHHHH-HcCC-----Cc
Confidence            45799999999999888776        2         3578999997553 1      111111111 1111     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYS  157 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~a  157 (269)
                      +  ..+.+++.. .+|++++|++++...
T Consensus        85 ~--~~~~~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           85 C--QIIKGRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             E--EEEESCHHH-HGGGCCCSEEEECSC
T ss_pred             E--EEEECCccc-cccCCCCcEEEECCc
Confidence            2  223377777 788889999999544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.33  E-value=0.00077  Score=61.25  Aligned_cols=129  Identities=15%  Similarity=0.022  Sum_probs=69.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        +.+      .+..+|+..|+...       .+....+.+. +.|.     .+ 
T Consensus       119 g~~VLDlg~G~G~~t~~la--------~~~------~~~~~v~avD~s~~-------~l~~a~~~~~-~~g~-----~~-  170 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLA--------QLM------RNDGVIYAFDVDEN-------RLRETRLNLS-RLGV-----LN-  170 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHH--------HHT------TTCSEEEEECSCHH-------HHHHHHHHHH-HHTC-----CS-
T ss_pred             CCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEEcCCHH-------HHHHHHHHHH-HhCC-----Ce-
Confidence            4699999999999999877        442      13478999997654       1111111111 1121     12 


Q ss_pred             EEeecCCCccCCCCCCCceeeEecc---ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSS---YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss---~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       +..+-+++.....+++++|++++.   +.+.-+.+.|....         ..++..     .....+.-..+|+.=.+-
T Consensus       171 -v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~---------~~~~~~-----~~~~~~~q~~~L~~~~~~  235 (315)
T 1ixk_A          171 -VILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKW---------NRTMDD-----IKFCQGLQMRLLEKGLEV  235 (315)
T ss_dssp             -EEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC-----------------CCHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhh---------cCCHHH-----HHHHHHHHHHHHHHHHHh
Confidence             222346666544456789999972   11111112221110         011111     112233445666666677


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||+|++++....
T Consensus       236 LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          236 LKPGGILVYSTCSLE  250 (315)
T ss_dssp             EEEEEEEEEEESCCC
T ss_pred             CCCCCEEEEEeCCCC
Confidence            889999999886553

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.32  E-value=0.00065  Score=64.28  Aligned_cols=127  Identities=17%  Similarity=0.096  Sum_probs=72.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|..++        +..       +..+|+.+|....=.       ....+.+. +.|.     ...
T Consensus       247 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~~~~~l-------~~~~~~~~-~~g~-----~~~  298 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHIL--------EVA-------PEAQVVAVDIDEQRL-------SRVYDNLK-RLGM-----KAT  298 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHH--------HHC-------TTCEEEEEESSTTTH-------HHHHHHHH-HTTC-----CCE
T ss_pred             cCeEEEECCCchHHHHHHH--------HHc-------CCCEEEEECCCHHHH-------HHHHHHHH-HcCC-----CeE
Confidence            4699999999999999887        442       347999999877622       11111111 1121     112


Q ss_pred             EEeecCCCccCCC--CCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          131 FFTGVPGSFYGRL--FPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       131 f~~~vpgSFy~~l--fP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      ++   .+++....  ++++++|++++   .+....+.+.|....        .. ++.. .    ....+....+|+.=.
T Consensus       299 ~~---~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~--------~~-~~~~-~----~~l~~~q~~~L~~a~  361 (429)
T 1sqg_A          299 VK---QGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKW--------LR-RDRD-I----PELAQLQSEILDAIW  361 (429)
T ss_dssp             EE---ECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHH--------HC-CTTH-H----HHHHHHHHHHHHHHG
T ss_pred             EE---eCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhh--------cC-CHHH-H----HHHHHHHHHHHHHHH
Confidence            33   36665544  67789999986   223333333332110        00 1111 1    112233345666556


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+|+++++...
T Consensus       362 ~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          362 PHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             GGEEEEEEEEEEESCCC
T ss_pred             HhcCCCCEEEEEECCCC
Confidence            77889999999987664

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.32  E-value=0.00023  Score=63.91  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      ...+|+|+|||+|..|..++        ++.         .+|+..|+...          + .+.++++.. .+.  ..
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~--------~~~---------~~v~~vD~~~~----------~-~~~a~~~~~~~~~--~~   77 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLL--------EKA---------KKVVACELDPR----------L-VAELHKRVQGTPV--AS   77 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHH--------HHS---------SEEEEEESCHH----------H-HHHHHHHHTTSTT--GG
T ss_pred             CCCEEEEEcCcccHHHHHHH--------hhC---------CEEEEEECCHH----------H-HHHHHHHHHhcCC--CC
Confidence            45799999999999999887        431         47888886543          1 111222211 100  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      ++  ..+-+++....+|  ++|.++++...||.+.
T Consensus        78 ~v--~~~~~D~~~~~~~--~fD~vv~nlpy~~~~~  108 (285)
T 1zq9_A           78 KL--QVLVGDVLKTDLP--FFDTCVANLPYQISSP  108 (285)
T ss_dssp             GE--EEEESCTTTSCCC--CCSEEEEECCGGGHHH
T ss_pred             ce--EEEEcceecccch--hhcEEEEecCcccchH
Confidence            21  2233788776566  7999999988888653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.29  E-value=0.00034  Score=60.57  Aligned_cols=83  Identities=7%  Similarity=-0.080  Sum_probs=46.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        ++.       |..+|+..|+...       .+........ ..+..    ..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la--------~~~-------~~~~v~gvD~s~~-------~~~~a~~~~~-~~~~~----~~  117 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLG--------ATL-------NGWYFLATEVDDM-------CFNYAKKNVE-QNNLS----DL  117 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHH--------HHH-------HCCEEEEEESCHH-------HHHHHHHHHH-HTTCT----TT
T ss_pred             CCCEEEEeCCChhHHHHHHH--------HhC-------CCCeEEEEECCHH-------HHHHHHHHHH-HcCCC----cc
Confidence            45799999999999988776        433       3478999997654       0111111111 11211    11


Q ss_pred             -eEEeecCCCccC---CCCCC---CceeeEeccccccccc
Q 024331          130 -CFFTGVPGSFYG---RLFPR---NSVHLFHSSYSLQWLS  162 (269)
Q Consensus       130 -~f~~~vpgSFy~---~lfP~---~Svd~~~Ss~alHWLS  162 (269)
                       -++.   ++...   ..++.   +++|+++|+-..|+..
T Consensus       118 v~~~~---~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          118 IKVVK---VPQKTLLMDALKEESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             EEEEE---CCTTCSSTTTSTTCCSCCBSEEEECCCCC---
T ss_pred             EEEEE---cchhhhhhhhhhcccCCcccEEEECCCCccCc
Confidence             2333   44333   24553   6899999986666543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.28  E-value=0.00023  Score=65.60  Aligned_cols=81  Identities=14%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +++.+|+|+|||+|..+..++        +++       |.++|...|+-..           ..+..++..+...  .+
T Consensus        88 p~~~rVLdIG~G~G~la~~la--------~~~-------p~~~v~~VEidp~-----------vi~~Ar~~~~~~~--~~  139 (317)
T 3gjy_A           88 ASKLRITHLGGGACTMARYFA--------DVY-------PQSRNTVVELDAE-----------LARLSREWFDIPR--AP  139 (317)
T ss_dssp             GGGCEEEEESCGGGHHHHHHH--------HHS-------TTCEEEEEESCHH-----------HHHHHHHHSCCCC--TT
T ss_pred             CCCCEEEEEECCcCHHHHHHH--------HHC-------CCcEEEEEECCHH-----------HHHHHHHhccccC--CC
Confidence            456799999999998877666        543       5678888887654           1222233222110  01


Q ss_pred             ce-EEeecCCCccCC--CCCCCceeeEeccccccc
Q 024331          129 QC-FFTGVPGSFYGR--LFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       129 ~~-f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHW  160 (269)
                      ++ ++.   ++...-  -++++++|+|++....||
T Consensus       140 rv~v~~---~Da~~~l~~~~~~~fDvIi~D~~~~~  171 (317)
T 3gjy_A          140 RVKIRV---DDARMVAESFTPASRDVIIRDVFAGA  171 (317)
T ss_dssp             TEEEEE---SCHHHHHHTCCTTCEEEEEECCSTTS
T ss_pred             ceEEEE---CcHHHHHhhccCCCCCEEEECCCCcc
Confidence            22 223   555442  257789999999765555

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.25  E-value=0.00082  Score=61.12  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=17.4

Q ss_pred             CceEEEeecCCCCcccHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      ...+|+|+|||+|..|..++
T Consensus        82 ~g~~VLDlGcG~G~~s~~la  101 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCG  101 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHH
Confidence            35799999999999988777

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.17  E-value=0.00057  Score=60.85  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=25.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++.++        +.        ...+|+..|+++.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a--------~~--------~~~~v~~~D~s~~  113 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAF--------LA--------GADQVVATDYPDP  113 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHH--------HT--------TCSEEEEEECSCH
T ss_pred             CCCeEEEecccccHHHHHHH--------Hc--------CCCEEEEEeCCCH
Confidence            34699999999999887665        32        1248999998543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.16  E-value=0.00067  Score=61.59  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ...+|+|+|||+|..++.++        +..      .|..+|+..|+..
T Consensus       105 ~g~~VLDiG~G~G~~~~~la--------~~~------g~~~~v~~vD~~~  140 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLS--------KAV------GSQGRVISFEVRK  140 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCcCHHHHHHH--------HHh------CCCceEEEEeCCH
Confidence            35799999999999998877        432      1457888888744

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.15  E-value=0.00054  Score=57.89  Aligned_cols=37  Identities=11%  Similarity=0.151  Sum_probs=28.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..|+.++        +.+      ++..+|+..|....
T Consensus        64 ~~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~  100 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMG--------LAL------PKDGTLITCDVDEK  100 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHH--------TTC------CTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCcchHHHHHHH--------HhC------CCCCEEEEEeCCHH
Confidence            35699999999999998777        332      23689999997653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.15  E-value=0.00057  Score=59.45  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=28.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +.+|+|+|||+|..|+.++        +.++..   .|..+|+..|+...
T Consensus        82 ~~~VLDiG~GtG~~t~~la--------~~~~~~---~~~~~V~gvD~s~~  120 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFR--------DLTKIM---GIDCQVIGIDRDLS  120 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHH--------HHHHHT---TCCCEEEEEESCCT
T ss_pred             CCEEEEEeCCCCHHHHHHH--------Hhhhhc---CCCCEEEEEeCChH
Confidence            4699999999999999777        321111   15688999998765

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.14  E-value=0.002  Score=55.35  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=26.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      +.+|+|+|||+|..++.++        +..      ++..+|+..|...
T Consensus        61 ~~~VLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~   95 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFA--------SAL------PEDGKILCCDVSE   95 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHH--------HHS------CTTCEEEEEESCH
T ss_pred             cCEEEEEeCCCCHHHHHHH--------HhC------CCCCEEEEEECCH
Confidence            5799999999999998877        442      1246888888654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.13  E-value=0.0014  Score=59.31  Aligned_cols=142  Identities=13%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +.+-+|+|+|||.|+.|+.++        .       ..|..+++..|.-..        +-.+....-...|.     +
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~--------~-------~~p~a~y~a~DId~~--------~le~a~~~l~~~g~-----~  182 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWM--------G-------LPAETVYIASDIDAR--------LVGFVDEALTRLNV-----P  182 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTT--------T-------CCTTCEEEEEESBHH--------HHHHHHHHHHHTTC-----C
T ss_pred             CCCceeeeeccCccHHHHHHH--------h-------hCCCCEEEEEeCCHH--------HHHHHHHHHHhcCC-----C
Confidence            457899999999999999777        2       347899999997654        11111111112222     1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      ..+..   .++-... |....|++.++-++|-|.+-...      .             .|         ++    -+.|
T Consensus       183 ~~~~v---~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg------~-------------g~---------~l----l~aL  226 (281)
T 3lcv_B          183 HRTNV---ADLLEDR-LDEPADVTLLLKTLPCLETQQRG------S-------------GW---------EV----IDIV  226 (281)
T ss_dssp             EEEEE---CCTTTSC-CCSCCSEEEETTCHHHHHHHSTT------H-------------HH---------HH----HHHS
T ss_pred             ceEEE---eeecccC-CCCCcchHHHHHHHHHhhhhhhH------H-------------HH---------HH----HHHh
Confidence            12222   5655555 77789999999999998663321      1             11         12    2356


Q ss_pred             ccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHH-ccCcccccccceeccc
Q 024331          209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVS-EVTKSFLLLIVFNQLN  263 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~-eG~i~~~~~d~FnlP~  263 (269)
                      +||| +++++.-+.=.++.-    .|.+.-.+.|...+. .|.    .++.+.++.
T Consensus       227 ~~~~-vvVSfp~ksl~Grs~----gm~~~Y~~~~e~~~~~~g~----~~~~~~~~n  273 (281)
T 3lcv_B          227 NSPN-IVVTFPTKSLGQRSK----GMFQNYSQSFESQARERSC----RIQRLEIGN  273 (281)
T ss_dssp             SCSE-EEEEEECC-----------CHHHHHHHHHHHHHHHHTC----CEEEEEETT
T ss_pred             CCCC-EEEeccchhhcCCCc----chhhHHHHHHHHHHHhcCC----ceeeeeecC
Confidence            6765 567777654333332    134555666777555 554    445555553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.12  E-value=0.002  Score=62.29  Aligned_cols=130  Identities=11%  Similarity=0.042  Sum_probs=71.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|+.++        ++.      .+..+|+.+|+...=       +....+.++ +.|.     .+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA--------~~~------~~~g~V~avDis~~~-------l~~~~~n~~-r~g~-----~n  169 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQIS--------ARM------NNEGAILANEFSASR-------VKVLHANIS-RCGI-----SN  169 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHH--------HHT------TTCSEEEEECSSHHH-------HHHHHHHHH-HHTC-----CS
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HhC------CCCCEEEEEECCHHH-------HHHHHHHHH-HcCC-----Cc
Confidence            35799999999999999887        442      134789999986541       111111111 1221     12


Q ss_pred             eEEeecCCCccCCCC-CCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYGRLF-PRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf-P~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      +-  .+-++...... +++++|.|++   .+...-+.+.|....         ..++.. .+.    ..+.-..+|+.=.
T Consensus       170 v~--~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~---------~~~~~~-~~~----l~~~q~~iL~~a~  233 (479)
T 2frx_A          170 VA--LTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALK---------NWSPES-NQE----IAATQRELIDSAF  233 (479)
T ss_dssp             EE--EECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSS---------SCCHHH-HHH----HHHHHHHHHHHHH
T ss_pred             EE--EEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHh---------hcCHhH-HHH----HHHHHHHHHHHHH
Confidence            21  22355544322 4678999997   233333344443221         111111 111    2222344555555


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|||||+|+++++...
T Consensus       234 ~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          234 HALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             HHEEEEEEEEEEESCCS
T ss_pred             HhcCCCCEEEEecccCC
Confidence            67889999999987664

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.08  E-value=0.0004  Score=61.63  Aligned_cols=128  Identities=9%  Similarity=-0.008  Sum_probs=66.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        +..      ....+|+..|+...       .+....+.+. +.|.     .++
T Consensus        84 g~~VLDlgaG~G~~t~~la--------~~~------~~~~~v~avD~~~~-------~l~~~~~~~~-~~g~-----~~v  136 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLA--------QLM------KNKGTIVAVEISKT-------RTKALKSNIN-RMGV-----LNT  136 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHH--------HHT------TTCSEEEEEESCHH-------HHHHHHHHHH-HTTC-----CSE
T ss_pred             cCEEEEeCCCccHHHHHHH--------HHc------CCCCEEEEECCCHH-------HHHHHHHHHH-HhCC-----CcE
Confidence            4699999999999998877        432      12378999998654       0111111111 1121     122


Q ss_pred             EEeecCCCccCCCC----CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRLF----PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~lf----P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      -  .+-+++.....    +.+++|++++.        .|+.-.   |.+.  +.  +.....-.....++...+|+.=.+
T Consensus       137 ~--~~~~D~~~~~~~~~~~~~~fD~Vl~d--------~Pcs~~---g~~~--~~--p~~~~~~~~~~~~~~~~~l~~~~~  199 (274)
T 3ajd_A          137 I--IINADMRKYKDYLLKNEIFFDKILLD--------APCSGN---IIKD--KN--RNVSEEDIKYCSLRQKELIDIGID  199 (274)
T ss_dssp             E--EEESCHHHHHHHHHHTTCCEEEEEEE--------ECCC-------------------HHHHTGGGTCHHHHHHHHHH
T ss_pred             E--EEeCChHhcchhhhhccccCCEEEEc--------CCCCCC---cccc--cC--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1  22356655433    36789999873        232111   1100  00  000000011112334556665567


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      -|+|||+|++++....
T Consensus       200 ~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          200 LLKKDGELVYSTCSME  215 (274)
T ss_dssp             HEEEEEEEEEEESCCC
T ss_pred             hCCCCCEEEEEECCCC
Confidence            7889999999987664

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.03  E-value=0.0021  Score=54.75  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..++.++        ++         ..+|+..|.... .      +....+... ..+..    .+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~--------~~---------~~~v~~vD~~~~-~------~~~a~~~~~-~~~~~----~~  141 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLS--------EV---------AGEVWTFEAVEE-F------YKTAQKNLK-KFNLG----KN  141 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HH---------SSEEEEECSCHH-H------HHHHHHHHH-HTTCC----TT
T ss_pred             CCCEEEEeCCCccHHHHHHH--------Hh---------CCEEEEEecCHH-H------HHHHHHHHH-HcCCC----Cc
Confidence            35799999999999888776        32         257888887543 1      111111111 11210    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      +  ..+.+++....++++++|++++
T Consensus       142 ~--~~~~~d~~~~~~~~~~~D~v~~  164 (248)
T 2yvl_A          142 V--KFFNVDFKDAEVPEGIFHAAFV  164 (248)
T ss_dssp             E--EEECSCTTTSCCCTTCBSEEEE
T ss_pred             E--EEEEcChhhcccCCCcccEEEE
Confidence            1  2234777765547889999997

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.00  E-value=0.0016  Score=59.84  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +.         ..+|+..|+...       .+....+... ..+...  .+-
T Consensus       153 ~~~~VLDlgcGtG~~sl~la--------~~---------ga~V~~VD~s~~-------al~~a~~n~~-~~gl~~--~~v  205 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAA--------AA---------GAEVTHVDASKK-------AIGWAKENQV-LAGLEQ--API  205 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEECSCHH-------HHHHHHHHHH-HHTCTT--SCE
T ss_pred             CCCcEEEcccccCHHHHHHH--------Hc---------CCEEEEEECCHH-------HHHHHHHHHH-HcCCCc--cce
Confidence            35799999999999998777        32         138999997654       0111111111 112100  001


Q ss_pred             eEEeecCCCccCCCC----CCCceeeEeccccccccccCCCCCCC-CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          130 CFFTGVPGSFYGRLF----PRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf----P~~Svd~~~Ss~alHWLS~~P~~l~~-nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                      .|+   -++....+.    ..+++|++++.         |+.+.. .++.++               ...+|...+|+.=
T Consensus       206 ~~i---~~D~~~~l~~~~~~~~~fD~Ii~d---------PP~~~~~~~~~~~---------------~~~~~~~~ll~~~  258 (332)
T 2igt_A          206 RWI---CEDAMKFIQREERRGSTYDIILTD---------PPKFGRGTHGEVW---------------QLFDHLPLMLDIC  258 (332)
T ss_dssp             EEE---CSCHHHHHHHHHHHTCCBSEEEEC---------CCSEEECTTCCEE---------------EHHHHHHHHHHHH
T ss_pred             EEE---ECcHHHHHHHHHhcCCCceEEEEC---------CccccCCchHHHH---------------HHHHHHHHHHHHH
Confidence            233   366655332    15789999982         221110 011122               1345667777777


Q ss_pred             hhhhccCCeEEEEeccc
Q 024331          205 SEELVAEGRMVLTFLGR  221 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~  221 (269)
                      .+-|+|||++++.....
T Consensus       259 ~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          259 REILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHTBCTTCCEEEEEECC
T ss_pred             HHhcCcCcEEEEEECCC
Confidence            78899999988877543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.00  E-value=0.0017  Score=61.94  Aligned_cols=129  Identities=10%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        +..      ....+|+.+|....       .+....+.+. +.|.     .++
T Consensus       260 g~~VLDlgaG~G~~t~~la--------~~~------~~~~~v~a~D~s~~-------~l~~~~~~~~-~~g~-----~~v  312 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLA--------ELM------KNKGKIYAFDVDKM-------RMKRLKDFVK-RMGI-----KIV  312 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHH--------HHT------TTCSEEEEECSCHH-------HHHHHHHHHH-HTTC-----CSE
T ss_pred             cCEEEEeCCCccHHHHHHH--------HHc------CCCCEEEEEcCCHH-------HHHHHHHHHH-HcCC-----CcE
Confidence            4699999999999999877        442      12378999998764       1111111111 1121     122


Q ss_pred             EEeecCCCccCCC--CCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          131 FFTGVPGSFYGRL--FPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       131 f~~~vpgSFy~~l--fP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                        ..+.+++....  ++++++|++++   .+.+.-+.+.|...       |..  ++.. .+.+    .+.-..+|+.=.
T Consensus       313 --~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~-------~~~--~~~~-~~~l----~~~q~~iL~~a~  376 (450)
T 2yxl_A          313 --KPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELR-------WRL--REDK-INEM----SQLQRELLESAA  376 (450)
T ss_dssp             --EEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHH-------HHC--CTTS-HHHH----HHHHHHHHHHHH
T ss_pred             --EEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhh-------hhC--CHHH-HHHH----HHHHHHHHHHHH
Confidence              22335665543  67789999996   12222222333210       000  0100 0111    111134455445


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+|+++++...
T Consensus       377 ~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          377 RLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             TTEEEEEEEEEEESCCC
T ss_pred             HhcCCCcEEEEEeCCCC
Confidence            66789999999987654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.99  E-value=0.0029  Score=56.66  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=27.1

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|..++.++        +.        |..+|+..|+...
T Consensus       124 ~~~vLDlG~GsG~~~~~la--------~~--------~~~~v~~vDis~~  157 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVA--------KF--------SDAIVFATDVSSK  157 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHH--------HH--------SSCEEEEEESCHH
T ss_pred             CCEEEEEeCchhHHHHHHH--------HC--------CCCEEEEEECCHH
Confidence            4689999999999988776        32        4589999997654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=96.96  E-value=0.0012  Score=58.12  Aligned_cols=77  Identities=4%  Similarity=-0.007  Sum_probs=48.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +.-+|+|+|||||.-++.++        +.       .|..+|+..|+-..          ++ +.++++. ..++  ..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la--------~~-------~~~~~V~AvDi~~~----------al-~~A~~N~~~~gl--~~   72 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLL--------QM-------GYCDFAIAGEVVNG----------PY-QSALKNVSEHGL--TS   72 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHH--------HT-------TCEEEEEEEESSHH----------HH-HHHHHHHHHTTC--TT
T ss_pred             CCCEEEEECCchHHHHHHHH--------Hh-------CCCCEEEEEECCHH----------HH-HHHHHHHHHcCC--CC
Confidence            45899999999999999887        43       25678999998765          22 1122211 1111  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSY  156 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~  156 (269)
                      .  +..+.|+....+.|.+.+|+++..-
T Consensus        73 ~--I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           73 K--IDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             T--EEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             c--EEEEECchhhccccccccCEEEEeC
Confidence            1  2234478788777777899887543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.96  E-value=0.00027  Score=64.30  Aligned_cols=85  Identities=11%  Similarity=0.078  Sum_probs=47.4

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH-hcCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK-QLGSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~-~~~~~~~~~  127 (269)
                      +++.+|+|+|||+|..+..++        ++       .|..+|+..|+... .-.+.+      +.+.. ..+ .+. .
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~-~i~~ar------~~~~~~~~~-~~~-~  131 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVL--------KH-------PTVEKAVMVDIDGE-LVEVAK------RHMPEWHQG-AFD-D  131 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHT--------TS-------TTCCEEEEEESCHH-HHHHHH------HHCHHHHTT-GGG-C
T ss_pred             CCCCeEEEEcCCcCHHHHHHH--------hc-------CCCCEEEEEECCHH-HHHHHH------HHhHhhccc-ccc-C
Confidence            356899999999999887665        32       24568899987653 111111      10111 001 000 0


Q ss_pred             Cc-eEEeecCCCccCC-CCCCCceeeEeccccccc
Q 024331          128 GQ-CFFTGVPGSFYGR-LFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       128 ~~-~f~~~vpgSFy~~-lfP~~Svd~~~Ss~alHW  160 (269)
                      ++ -++.   ++...- ..+++++|++++....||
T Consensus       132 ~~v~~~~---~D~~~~l~~~~~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          132 PRAVLVI---DDARAYLERTEERYDVVIIDLTDPV  163 (314)
T ss_dssp             TTEEEEE---SCHHHHHHHCCCCEEEEEEECCCCB
T ss_pred             CceEEEE---chHHHHHHhcCCCccEEEECCCCcc
Confidence            12 2222   554432 235789999999877776

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.92  E-value=0.0018  Score=54.83  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=28.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..++.++        +..      ++..+|+..|+...
T Consensus        69 ~~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~  105 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALA--------LAL------PADGRVVTCEVDAQ  105 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCSH
T ss_pred             CCCEEEEEcCCccHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            35799999999999988777        321      23578999998654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=96.89  E-value=0.0015  Score=58.03  Aligned_cols=131  Identities=11%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +.-+|+|+|||+|.-++.++        +.       .|..+|+..|+-..          .+ +.++++. ..++  ..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la--------~~-------~~~~~V~avDi~~~----------al-~~A~~N~~~~gl--~~   72 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAV--------KN-------QTASFAIAGEVVDG----------PF-QSAQKQVRSSGL--TE   72 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHH--------HT-------TSEEEEEEEESSHH----------HH-HHHHHHHHHTTC--TT
T ss_pred             CCCEEEEECCccHHHHHHHH--------Hh-------CCCCEEEEEECCHH----------HH-HHHHHHHHHcCC--Cc
Confidence            45799999999999999887        43       25678999998665          22 1122211 1111  01


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccc-----cccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSY-----SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC  203 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~-----alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~  203 (269)
                      .  +..+.|+.+..+.|..++|++++.-     -.+-|.+.+..+.+ .+.+.++.-...           ..++++|..
T Consensus        73 ~--I~v~~gD~l~~~~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~-~~~lIlq~~~~~-----------~~lr~~L~~  138 (244)
T 3gnl_A           73 Q--IDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAG-VTKLILQPNIAA-----------WQLREWSEQ  138 (244)
T ss_dssp             T--EEEEECSGGGGCCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTT-CCEEEEEESSCH-----------HHHHHHHHH
T ss_pred             e--EEEEecchhhccCccccccEEEEeCCchHHHHHHHHHHHHHhCC-CCEEEEEcCCCh-----------HHHHHHHHH
Confidence            1  2223477788777766799988753     23345555555432 234444433332           233334443


Q ss_pred             h------hhhhccCCeEEEEecccC
Q 024331          204 R------SEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       204 R------a~EL~pGG~lv~~~~g~~  222 (269)
                      .      -..++-+|..+-.+....
T Consensus       139 ~Gf~i~~E~lv~e~~k~Yeii~~~~  163 (244)
T 3gnl_A          139 NNWLITSEAILREDNKVYEIMVLAP  163 (244)
T ss_dssp             HTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEECCEEEEEEEEEe
Confidence            3      233456887776665443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.87  E-value=0.002  Score=62.19  Aligned_cols=129  Identities=12%  Similarity=0.041  Sum_probs=71.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|+.++        ++.      .+..+|+.+|+...=       +....+.+. +.|  .    .
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA--------~~~------~~~g~V~AvDis~~~-------l~~a~~n~~-r~G--~----~  152 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLA--------ARM------GGKGLLLANEVDGKR-------VRGLLENVE-RWG--A----P  152 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHH--------HHT------TTCSEEEEECSCHHH-------HHHHHHHHH-HHC--C----C
T ss_pred             CCCEEEEEcCCcCHHHHHHH--------HhC------CCCCEEEEEECCHHH-------HHHHHHHHH-HcC--C----e
Confidence            35799999999999999888        543      134689999976541       111111111 122  1    1


Q ss_pred             eEEeecCCCccCCC-CCCCceeeEec---cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYGRL-FPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~~l-fP~~Svd~~~S---s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                        +..+-++..... +.++++|.|++   .+..--+.+.|....         ..++..+ +.    ..+.-..+|+.=.
T Consensus       153 --v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~---------~~~~~~~-~~----l~~~Q~~iL~~a~  216 (464)
T 3m6w_A          153 --LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAAR---------HWGPSAP-KR----MAEVQKALLAQAS  216 (464)
T ss_dssp             --CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGG---------GCCTTHH-HH----HHHHHHHHHHHHH
T ss_pred             --EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhh---------hcCHHHH-HH----HHHHHHHHHHHHH
Confidence              222335654433 34689999985   112222223332211         1112111 12    2233356666666


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +-|+|||+|+.+++...
T Consensus       217 ~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          217 RLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             TTEEEEEEEEEEESCCC
T ss_pred             HhcCCCcEEEEEeccCc
Confidence            77889999999987654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.86  E-value=0.0028  Score=58.93  Aligned_cols=115  Identities=16%  Similarity=0.065  Sum_probs=69.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +.         ..+|+..|+...       .+........ ..+  .   .+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la--------~~---------~~~v~~vD~s~~-------~~~~a~~n~~-~n~--~---~~  258 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLA--------LG---------FREVVAVDSSAE-------ALRRAEENAR-LNG--L---GN  258 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHH--------HH---------EEEEEEEESCHH-------HHHHHHHHHH-HTT--C---TT
T ss_pred             CCCeEEEeeeccCHHHHHHH--------Hh---------CCEEEEEECCHH-------HHHHHHHHHH-HcC--C---CC
Confidence            45799999999999998877        32         257888886543       0111111111 112  1   12


Q ss_pred             -eEEeecCCCccCCCC----CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          130 -CFFTGVPGSFYGRLF----PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 -~f~~~vpgSFy~~lf----P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                       .|+.   ++....+.    +..++|++++        + |+.+..++          ..     .....+++..+++.=
T Consensus       259 ~~~~~---~d~~~~~~~~~~~~~~fD~Ii~--------d-pP~~~~~~----------~~-----~~~~~~~~~~~l~~~  311 (382)
T 1wxx_A          259 VRVLE---ANAFDLLRRLEKEGERFDLVVL--------D-PPAFAKGK----------KD-----VERAYRAYKEVNLRA  311 (382)
T ss_dssp             EEEEE---SCHHHHHHHHHHTTCCEEEEEE--------C-CCCSCCST----------TS-----HHHHHHHHHHHHHHH
T ss_pred             ceEEE---CCHHHHHHHHHhcCCCeeEEEE--------C-CCCCCCCh----------hH-----HHHHHHHHHHHHHHH
Confidence             2333   66655322    1678999996        2 32222111          11     123557888888888


Q ss_pred             hhhhccCCeEEEEeccc
Q 024331          205 SEELVAEGRMVLTFLGR  221 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~  221 (269)
                      .+-|+|||.++++....
T Consensus       312 ~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          312 IKLLKEGGILATASCSH  328 (382)
T ss_dssp             HHTEEEEEEEEEEECCT
T ss_pred             HHhcCCCCEEEEEECCC
Confidence            89999999999987544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.85  E-value=0.0017  Score=57.66  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=27.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      +.-+|+|+|||+|..|+.++        ++.       +..+|+..|+..
T Consensus       119 ~~~~VLDlgcG~G~~s~~la--------~~~-------~~~~V~~vD~s~  153 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLA--------KYS-------KPKLVYAIEKNP  153 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHH--------HHT-------CCSEEEEEECCH
T ss_pred             CCCEEEEecCcCCHHHHHHH--------HhC-------CCCEEEEEeCCH
Confidence            45799999999999999887        542       346899999754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.84  E-value=0.00079  Score=62.08  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        ++       .|..+|+..|+...
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la--------~~-------~~~~~V~~VDis~~  155 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVA--------RH-------ASIEQIDMCEIDKM  155 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHT--------TC-------TTCCEEEEEESCHH
T ss_pred             CCCCEEEEECCCccHHHHHHH--------Hc-------CCCCEEEEEECCHH
Confidence            456899999999999887666        32       25678999997654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.83  E-value=0.0026  Score=56.64  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=27.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        ++       .+..+|...|+-..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vEid~~  110 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREIL--------KH-------PSVKKATLVDIDGK  110 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHT--------TC-------TTCSEEEEEESCHH
T ss_pred             CCCCEEEEECCchHHHHHHHH--------hC-------CCCceEEEEECCHH
Confidence            457899999999998877655        22       24568888887553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.81  E-value=0.0017  Score=55.78  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=26.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      +.+|+|+|||+|..++.++        +.+      ++..+|+..|...
T Consensus        73 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~iD~~~  107 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMA--------LQL------PPDGQIIACDQDP  107 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCH
T ss_pred             CCEEEEecCCCCHHHHHHH--------HhC------CCCCEEEEEECCH
Confidence            5699999999999998877        332      1357899998754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.79  E-value=0.0043  Score=53.61  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=28.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ++.+|+|+|||+|..++.++        +..      ++..+|+..|...
T Consensus        70 ~~~~VLeiG~G~G~~~~~la--------~~~------~~~~~v~~iD~~~  105 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTA--------LSI------PDDGKITAIDFDR  105 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHH--------HHS------CTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------HhC------CCCCEEEEEECCH
Confidence            46799999999999999887        442      2357899998754

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.78  E-value=0.0046  Score=53.98  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..++.++        +..      ++..+|+..|....
T Consensus        79 ~~~~VLeiG~G~G~~~~~la--------~~~------~~~~~v~~iD~s~~  115 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATA--------LAI------PEDGKILAMDINKE  115 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHH--------HHS------CTTCEEEEEESCCH
T ss_pred             CcCEEEEeCCCcCHHHHHHH--------HhC------CCCCEEEEEECCHH
Confidence            45799999999999999877        442      23579999998664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.70  E-value=0.0029  Score=57.79  Aligned_cols=36  Identities=14%  Similarity=0.002  Sum_probs=27.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++.+|+|+|||+|..+..++        ++       .|..+|...|+...
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~  143 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVL--------KH-------ESVEKVTMCEIDEM  143 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHT--------TC-------TTCCEEEEECSCHH
T ss_pred             CCCEEEEEcCCcCHHHHHHH--------Hc-------CCCCEEEEEECCHH
Confidence            46799999999999887665        32       25678999997653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.69  E-value=0.0038  Score=55.77  Aligned_cols=37  Identities=8%  Similarity=0.018  Sum_probs=27.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        +.       .|..+|...|+-..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~  113 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELC--------KY-------KSVENIDICEIDET  113 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHT--------TC-------TTCCEEEEEESCHH
T ss_pred             CCCCeEEEEeCCcCHHHHHHH--------Hc-------CCCCEEEEEECCHH
Confidence            456899999999998877665        22       24578888887553

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.68  E-value=0.00071  Score=56.82  Aligned_cols=36  Identities=14%  Similarity=0.015  Sum_probs=27.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ++.+|+|+|||+|..++.++        +..      ++..+|+..|...
T Consensus        56 ~~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~   91 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFA--------RAI------SISSRVVMIDPDR   91 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHH--------TTS------CTTCEEEEEESCH
T ss_pred             CCCEEEEEcCCccHHHHHHH--------HhC------CCCCEEEEEECCH
Confidence            35799999999999998777        332      1257899999754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.66  E-value=0.0057  Score=57.57  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        +.         ...|+..|+...       .+....+.+. ..+.     ..-
T Consensus       215 g~~VLDlg~GtG~~sl~~a--------~~---------ga~V~avDis~~-------al~~a~~n~~-~ng~-----~~~  264 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAA--------RK---------GAYALAVDKDLE-------ALGVLDQAAL-RLGL-----RVD  264 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHH--------HT---------TCEEEEEESCHH-------HHHHHHHHHH-HHTC-----CCE
T ss_pred             CCeEEEcccchhHHHHHHH--------Hc---------CCeEEEEECCHH-------HHHHHHHHHH-HhCC-----CCc
Confidence            5799999999999999877        32         134999998764       0111111111 1121     112


Q ss_pred             EEeecCCCccCCC--CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          131 FFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       131 f~~~vpgSFy~~l--fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      +..   ++....+  ++.. +|++++.         |+.+..         + ...     .....+++..+++.=.+-|
T Consensus       265 ~~~---~D~~~~l~~~~~~-fD~Ii~d---------pP~f~~---------~-~~~-----~~~~~~~~~~ll~~a~~~L  316 (393)
T 4dmg_A          265 IRH---GEALPTLRGLEGP-FHHVLLD---------PPTLVK---------R-PEE-----LPAMKRHLVDLVREALRLL  316 (393)
T ss_dssp             EEE---SCHHHHHHTCCCC-EEEEEEC---------CCCCCS---------S-GGG-----HHHHHHHHHHHHHHHHHTE
T ss_pred             EEE---ccHHHHHHHhcCC-CCEEEEC---------CCcCCC---------C-HHH-----HHHHHHHHHHHHHHHHHhc
Confidence            333   5554421  2344 9999872         333331         1 111     2235678888888888899


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||.|+++....
T Consensus       317 kpGG~Lv~~s~s~  329 (393)
T 4dmg_A          317 AEEGFLWLSSCSY  329 (393)
T ss_dssp             EEEEEEEEEECCT
T ss_pred             CCCCEEEEEECCC
Confidence            9999999766544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=96.61  E-value=0.003  Score=55.27  Aligned_cols=36  Identities=6%  Similarity=0.009  Sum_probs=29.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||||.-++.++        +.       .|..+|+..|.-..
T Consensus        15 ~g~~VlDIGtGsG~l~i~la--------~~-------~~~~~V~avDi~~~   50 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELV--------ER-------GQIKSAIAGEVVEG   50 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHH--------HT-------TSEEEEEEEESSHH
T ss_pred             CCCEEEEeCCCcHHHHHHHH--------Hh-------CCCCEEEEEECCHH
Confidence            45799999999999999887        43       26678999998665

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.60  E-value=0.0054  Score=50.84  Aligned_cols=75  Identities=9%  Similarity=0.079  Sum_probs=45.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.+.        +.        +.-+|+..|+...          +. +..+++.. +     -
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~--------~~--------~~~~v~~vD~~~~----------~~-~~a~~~~~-~-----~   97 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSY--------LL--------GAESVTAFDIDPD----------AI-ETAKRNCG-G-----V   97 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHH--------HT--------TBSEEEEEESCHH----------HH-HHHHHHCT-T-----S
T ss_pred             CCCEEEEEeCCccHHHHHHH--------Hc--------CCCEEEEEECCHH----------HH-HHHHHhcC-C-----C
Confidence            45799999999999887665        32        2247899987543          21 22222211 1     1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      -++.   +++..  +| +++|+++++-.+||+++
T Consensus        98 ~~~~---~d~~~--~~-~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           98 NFMV---ADVSE--IS-GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             EEEE---CCGGG--CC-CCEEEEEECCCC-----
T ss_pred             EEEE---CcHHH--CC-CCeeEEEECCCchhccC
Confidence            3433   66666  34 79999999999998643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.55  E-value=0.0029  Score=57.82  Aligned_cols=37  Identities=8%  Similarity=0.018  Sum_probs=27.8

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        ++       .|..+|+..|+...
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDis~~  151 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELC--------KY-------KSVENIDICEIDET  151 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHT--------TC-------TTCCEEEEEESCHH
T ss_pred             CCCCEEEEEcCCccHHHHHHH--------Hc-------CCCCEEEEEECCHH
Confidence            346899999999999887665        22       24578999997654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.47  E-value=0.0009  Score=60.31  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=27.8

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        ++       .+..+|+..|+...
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~  125 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVL--------KH-------DSVEKAILCEVDGL  125 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHT--------TS-------TTCSEEEEEESCHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHH--------hc-------CCCCEEEEEECCHH
Confidence            346899999999999887666        32       24578999997653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.38  E-value=0.0028  Score=57.49  Aligned_cols=37  Identities=16%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        ++       .|..+|+..|+-..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~  130 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVV--------KH-------PSVESVVQCEIDED  130 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHT--------TC-------TTCCEEEEEESCHH
T ss_pred             CCCCEEEEECCCchHHHHHHH--------Hc-------CCCCEEEEEECCHH
Confidence            456899999999999887666        32       24578999997553

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.37  E-value=0.021  Score=53.16  Aligned_cols=115  Identities=10%  Similarity=0.086  Sum_probs=66.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC-
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG-  128 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~-  128 (269)
                      .-+|+|+|||+|..++.++        ++        ..-+|+..|+...          +.. .++++. ..++  .. 
T Consensus       213 ~~~VLDl~cGtG~~sl~la--------~~--------ga~~V~~vD~s~~----------al~-~A~~N~~~n~~--~~~  263 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAA--------MG--------GAMATTSVDLAKR----------SRA-LSLAHFEANHL--DMA  263 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHH--------HT--------TBSEEEEEESCTT----------HHH-HHHHHHHHTTC--CCT
T ss_pred             CCeEEEEeeccCHHHHHHH--------HC--------CCCEEEEEECCHH----------HHH-HHHHHHHHcCC--Ccc
Confidence            4699999999999998777        32        1238999998776          221 121111 0111  01 


Q ss_pred             c-eEEeecCCCccCCC--C--CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024331          129 Q-CFFTGVPGSFYGRL--F--PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC  203 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~l--f--P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~  203 (269)
                      + .|+.   ++....+  +  ...++|++++.         |+.+...++.+               ....+++..+++.
T Consensus       264 ~v~~~~---~D~~~~l~~~~~~~~~fD~Ii~D---------PP~~~~~~~~~---------------~~~~~~~~~ll~~  316 (385)
T 2b78_A          264 NHQLVV---MDVFDYFKYARRHHLTYDIIIID---------PPSFARNKKEV---------------FSVSKDYHKLIRQ  316 (385)
T ss_dssp             TEEEEE---SCHHHHHHHHHHTTCCEEEEEEC---------CCCC-----CC---------------CCHHHHHHHHHHH
T ss_pred             ceEEEE---CCHHHHHHHHHHhCCCccEEEEC---------CCCCCCChhhH---------------HHHHHHHHHHHHH
Confidence            2 3444   5654422  1  14589999971         33322111111               1134667777777


Q ss_pred             hhhhhccCCeEEEEeccc
Q 024331          204 RSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~~g~  221 (269)
                      =.+-|+|||.++++....
T Consensus       317 ~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          317 GLEILSENGLIIASTNAA  334 (385)
T ss_dssp             HHHTEEEEEEEEEEECCT
T ss_pred             HHHhcCCCcEEEEEeCCC
Confidence            778999999999987543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.36  E-value=0.016  Score=53.83  Aligned_cols=117  Identities=11%  Similarity=0.035  Sum_probs=69.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..|+.++        +.        ..-+|+..|+... .      +......+. ..+  +  ..+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la--------~~--------g~~~v~~vD~s~~-~------l~~a~~n~~-~n~--~--~~~  268 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAA--------IA--------GADEVIGIDKSPR-A------IETAKENAK-LNG--V--EDR  268 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHH--------HT--------TCSEEEEEESCHH-H------HHHHHHHHH-HTT--C--GGG
T ss_pred             CCCeEEEecCCCCHHHHHHH--------HC--------CCCEEEEEeCCHH-H------HHHHHHHHH-HcC--C--Ccc
Confidence            35799999999999998777        32        1247999997543 0      111111111 112  1  012


Q ss_pred             -eEEeecCCCccCCCC----CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          130 -CFFTGVPGSFYGRLF----PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 -~f~~~vpgSFy~~lf----P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                       .|+.   ++....+.    +.+++|++++        . |+.+..          +...+     ....+++..+|..=
T Consensus       269 v~~~~---~d~~~~~~~~~~~~~~fD~Vi~--------d-pP~~~~----------~~~~~-----~~~~~~~~~~l~~~  321 (396)
T 2as0_A          269 MKFIV---GSAFEEMEKLQKKGEKFDIVVL--------D-PPAFVQ----------HEKDL-----KAGLRAYFNVNFAG  321 (396)
T ss_dssp             EEEEE---SCHHHHHHHHHHTTCCEEEEEE--------C-CCCSCS----------SGGGH-----HHHHHHHHHHHHHH
T ss_pred             ceEEE---CCHHHHHHHHHhhCCCCCEEEE--------C-CCCCCC----------CHHHH-----HHHHHHHHHHHHHH
Confidence             2333   66655322    2678999997        2 332221          11111     23457888888888


Q ss_pred             hhhhccCCeEEEEeccc
Q 024331          205 SEELVAEGRMVLTFLGR  221 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~  221 (269)
                      .+-|+|||.++++....
T Consensus       322 ~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          322 LNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             HTTEEEEEEEEEEECCT
T ss_pred             HHhcCCCcEEEEEECCC
Confidence            89999999999887644

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.27  E-value=0.02  Score=52.91  Aligned_cols=106  Identities=8%  Similarity=-0.042  Sum_probs=62.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+| |+|..++.+.        ...       |..+|+..|+...       .+....+... +.|.     . 
T Consensus       172 ~~~~VLDlG-G~G~~~~~la--------~~~-------~~~~v~~vDi~~~-------~l~~a~~~~~-~~g~-----~-  221 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALM--------LSG-------LPKRIAVLDIDER-------LTKFIEKAAN-EIGY-----E-  221 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHH--------HHT-------CCSEEEEECSCHH-------HHHHHHHHHH-HHTC-----C-
T ss_pred             CCCEEEEEC-CCCHHHHHHH--------HhC-------CCCEEEEEECCHH-------HHHHHHHHHH-HcCC-----C-
Confidence            357999999 9999988766        331       4478999998553       1211111111 1121     1 


Q ss_pred             eEEeecCCCccC-CCC-CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          130 CFFTGVPGSFYG-RLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       130 ~f~~~vpgSFy~-~lf-P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       -+..+.+++.. ... +++++|+++++.-+|+.                                  +...||+.=.+-
T Consensus       222 -~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~----------------------------------~~~~~l~~~~~~  266 (373)
T 2qm3_A          222 -DIEIFTFDLRKPLPDYALHKFDTFITDPPETLE----------------------------------AIRAFVGRGIAT  266 (373)
T ss_dssp             -CEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH----------------------------------HHHHHHHHHHHT
T ss_pred             -CEEEEEChhhhhchhhccCCccEEEECCCCchH----------------------------------HHHHHHHHHHHH
Confidence             23334578876 222 35799999994322210                                  125566655678


Q ss_pred             hccCCeE-EEEecc
Q 024331          208 LVAEGRM-VLTFLG  220 (269)
Q Consensus       208 L~pGG~l-v~~~~g  220 (269)
                      |+|||++ ++++..
T Consensus       267 LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          267 LKGPRCAGYFGITR  280 (373)
T ss_dssp             BCSTTCEEEEEECT
T ss_pred             cccCCeEEEEEEec
Confidence            8999954 666543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.26  E-value=0.027  Score=52.04  Aligned_cols=122  Identities=12%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..++.++        +++      .+..+|+..|+-..          ...     .. .     +-
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~--------~~~------~~~~~i~gvDi~~~----------~~~-----~a-~-----~~   83 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFR--------EAH------GTAYRFVGVEIDPK----------ALD-----LP-P-----WA   83 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HHH------CSCSEEEEEESCTT----------TCC-----CC-T-----TE
T ss_pred             CCCEEEECCCCChHHHHHHH--------HHh------CCCCeEEEEECCHH----------HHH-----hC-C-----CC
Confidence            34599999999998877766        332      13478899998665          110     00 0     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC-CCcceEEcCCCCHHHHHHHHHHH------HHHHHHHHh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQF------QRDFSLFLK  202 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~-nkg~i~~~~~s~~~v~~ay~~Q~------~~D~~~FL~  202 (269)
                      -++   -+++... .+.+++|+++++         |+-... .++++.  ..-.+++.+.|....      ...+..|++
T Consensus        84 ~~~---~~D~~~~-~~~~~fD~Ii~N---------PPy~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~  148 (421)
T 2ih2_A           84 EGI---LADFLLW-EPGEAFDLILGN---------PPYGIVGEASKYP--IHVFKAVKDLYKKAFSTWKGKYNLYGAFLE  148 (421)
T ss_dssp             EEE---ESCGGGC-CCSSCEEEEEEC---------CCCCCBSCTTTCS--BCCCHHHHHHHHHHCTTCCTTCCHHHHHHH
T ss_pred             cEE---eCChhhc-CccCCCCEEEEC---------cCccCcccccccc--cccCHHHHHHHHHhhhcccCCccHHHHHHH
Confidence            222   2666653 356789999993         332221 000000  001123333332110      012346666


Q ss_pred             hhhhhhccCCeEEEEeccc
Q 024331          203 CRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       203 ~Ra~EL~pGG~lv~~~~g~  221 (269)
                      .=.+-|+|||++++.++..
T Consensus       149 ~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          149 KAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             HHHHHEEEEEEEEEEEEGG
T ss_pred             HHHHHhCCCCEEEEEEChH
Confidence            6667788999999988643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.20  E-value=0.0035  Score=60.37  Aligned_cols=129  Identities=11%  Similarity=0.052  Sum_probs=70.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|+.++        ++.      ....+|+.+|+...=       +....+.+. +.|.     .+
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA--------~~~------~~~g~V~AvDis~~r-------l~~~~~n~~-r~g~-----~n  157 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLA--------AQM------KGKGLLVTNEIFPKR-------AKILSENIE-RWGV-----SN  157 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHH--------HHH------TTCSEEEEECSSHHH-------HHHHHHHHH-HHTC-----SS
T ss_pred             CCCEEEEECCCcCHHHHHHH--------HHc------CCCCEEEEEeCCHHH-------HHHHHHHHH-HcCC-----Cc
Confidence            35799999999999999887        443      134689999986541       111111111 1221     23


Q ss_pred             eEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHH----HHHHHHHHHHHHHHhhh
Q 024331          130 CFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLT----AYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       130 ~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~----ay~~Q~~~D~~~FL~~R  204 (269)
                      +-+  +-++..... +.++++|.|++        +.|+.-.   |.+  .  ..+.+..    .......+.-..+|+.=
T Consensus       158 v~v--~~~Da~~l~~~~~~~FD~Il~--------DaPCSg~---G~~--r--r~p~~~~~~~~~~~~~l~~~Q~~iL~~a  220 (456)
T 3m4x_A          158 AIV--TNHAPAELVPHFSGFFDRIVV--------DAPCSGE---GMF--R--KDPNAIKEWTEESPLYCQKRQQEILSSA  220 (456)
T ss_dssp             EEE--ECCCHHHHHHHHTTCEEEEEE--------ECCCCCG---GGT--T--TCHHHHHHCCTTHHHHHHHHHHHHHHHH
T ss_pred             eEE--EeCCHHHhhhhccccCCEEEE--------CCCCCCc---ccc--c--cCHHHhhhcCHHHHHHHHHHHHHHHHHH
Confidence            222  224443322 23578999986        4454321   111  0  0111111    01122233345667766


Q ss_pred             hhhhccCCeEEEEecccC
Q 024331          205 SEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       205 a~EL~pGG~lv~~~~g~~  222 (269)
                      .+-|+|||+|+.+++...
T Consensus       221 ~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          221 IKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             HHTEEEEEEEEEEESCCC
T ss_pred             HHhcCCCcEEEEEEeecc
Confidence            677899999999987664

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.11  E-value=0.0069  Score=60.67  Aligned_cols=102  Identities=12%  Similarity=0.033  Sum_probs=57.3

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           20 SNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        20 ~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      |...+|+++...+++++.+      .....+..+|+|+|||+|+-+...++    +.++.       ...+.||..+-..
T Consensus       333 Ky~~Ye~AI~~Al~d~~~~------~~~~~~~~vVldVGaGrGpLv~~al~----A~a~~-------~~~vkVyAVEknp  395 (637)
T 4gqb_A          333 KYSQYQQAIYKCLLDRVPE------EEKDTNVQVLMVLGAGRGPLVNASLR----AAKQA-------DRRIKLYAVEKNP  395 (637)
T ss_dssp             HHHHHHHHHHHHHHHHSCG------GGTTTCEEEEEEESCTTSHHHHHHHH----HHHHT-------TCEEEEEEEESCH
T ss_pred             hHHHHHHHHHHHHHHhhhh------ccccCCCcEEEEECCCCcHHHHHHHH----HHHhc-------CCCcEEEEEECCH
Confidence            4555665555554443322      01123568999999999987665552    22221       1347899988633


Q ss_pred             CchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEec
Q 024331          100 NDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       100 NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                      |    ....     ....++.+++      --|.-+-|+..+--+| ..+|+++|
T Consensus       396 ~----A~~a-----~~~v~~N~~~------dkVtVI~gd~eev~LP-EKVDIIVS  434 (637)
T 4gqb_A          396 N----AVVT-----LENWQFEEWG------SQVTVVSSDMREWVAP-EKADIIVS  434 (637)
T ss_dssp             H----HHHH-----HHHHHHHTTG------GGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             H----HHHH-----HHHHHhccCC------CeEEEEeCcceeccCC-cccCEEEE
Confidence            2    1111     1122233332      1244455888887777 57999999

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.08  E-value=0.003  Score=61.91  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      ..+.+|+|+|||.|..|..++        ++         -++|...|+...          ++ +..+.+. ..+.  .
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la--------~~---------ga~V~giD~~~~----------~i-~~a~~~a~~~~~--~  114 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLA--------SK---------GATIVGIDFQQE----------NI-NVCRALAEENPD--F  114 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HH-HHHHHHHHTSTT--S
T ss_pred             CCCCeEEEECCCCcHHHHHHH--------hC---------CCEEEEECCCHH----------HH-HHHHHHHHhcCC--C
Confidence            457999999999998877766        43         278999998765          22 1122221 1110  0


Q ss_pred             CceEEeecCCCccCC--CCCCCceeeEecccccccccc
Q 024331          128 GQCFFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      .--|..   ++..+.  .++++++|+|+|.-.||++.+
T Consensus       115 ~~~~~~---~~~~~~~~~~~~~~fD~v~~~e~~ehv~~  149 (569)
T 4azs_A          115 AAEFRV---GRIEEVIAALEEGEFDLAIGLSVFHHIVH  149 (569)
T ss_dssp             EEEEEE---CCHHHHHHHCCTTSCSEEEEESCHHHHHH
T ss_pred             ceEEEE---CCHHHHhhhccCCCccEEEECcchhcCCC
Confidence            113544   555554  467889999999999999754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.00  E-value=0.0066  Score=54.06  Aligned_cols=36  Identities=14%  Similarity=0.218  Sum_probs=26.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +++.+|+|+|||+|..+..++        +       . +..+|+..|+-..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~--------~-------~-~~~~v~~vDid~~  109 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVL--------Q-------H-DVDEVIMVEIDED  109 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHT--------T-------S-CCSEEEEEESCHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHH--------h-------C-CCCEEEEEECCHH
Confidence            346899999999998887665        2       1 4468888887543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.00  E-value=0.026  Score=51.38  Aligned_cols=85  Identities=9%  Similarity=0.015  Sum_probs=47.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|.|||+|..++.+.        +.....  .....+++..|+-..    ..+....   .+. ..|..     .
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~--------~~~~~~--~~~~~~v~GiDi~~~----~~~~a~~---n~~-~~g~~-----~  186 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVI--------NQLELK--GDVDVHASGVDVDDL----LISLALV---GAD-LQRQK-----M  186 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHH--------HHHHTT--SSCEEEEEEEESCHH----HHHHHHH---HHH-HHTCC-----C
T ss_pred             CCCEEEeCCCCccHHHHHHH--------HHHHHh--cCCCceEEEEECCHH----HHHHHHH---HHH-hCCCC-----c
Confidence            46899999999999887766        322110  012488999997543    0010000   011 11211     1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWL  161 (269)
                      -++.   |++... .+...+|+++++--+++.
T Consensus       187 ~i~~---~D~l~~-~~~~~fD~Ii~NPPfg~~  214 (344)
T 2f8l_A          187 TLLH---QDGLAN-LLVDPVDVVISDLPVGYY  214 (344)
T ss_dssp             EEEE---SCTTSC-CCCCCEEEEEEECCCSEE
T ss_pred             eEEE---CCCCCc-cccCCccEEEECCCCCCc
Confidence            2333   565553 356889999998766553

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=95.78  E-value=0.022  Score=52.71  Aligned_cols=74  Identities=15%  Similarity=-0.011  Sum_probs=47.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~  126 (269)
                      ...+|+|+|||+|..++.++        ...       +..+|+..|+...          +.. ..++   ..|..-  
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a--------~~~-------~~~~v~g~Dis~~----------~l~-~A~~n~~~~gl~~--  268 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELA--------LRR-------YSGEIIGIEKYRK----------HLI-GAEMNALAAGVLD--  268 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHH--------HTT-------CCSCEEEEESCHH----------HHH-HHHHHHHHTTCGG--
T ss_pred             CCCEEEEccCcCcHHHHHHH--------HhC-------CCCeEEEEeCCHH----------HHH-HHHHHHHHcCCCC--
Confidence            35789999999999887766        331       2347999998655          211 1111   112100  


Q ss_pred             CCceEEeecCCCccCCCCCCCceeeEecc
Q 024331          127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                       .-.|..   +++....+|++++|+++++
T Consensus       269 -~i~~~~---~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          269 -KIKFIQ---GDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             -GCEEEE---CCGGGGGGTCSCEEEEEEE
T ss_pred             -ceEEEE---CChhhCCcccCCcCEEEEC
Confidence             113434   8888888889999999994

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.69  E-value=0.017  Score=58.26  Aligned_cols=121  Identities=16%  Similarity=0.069  Sum_probs=67.7

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        ..        ..-+|+..|+...       .+....+.+. ..+...  ..-.
T Consensus       540 g~~VLDlg~GtG~~sl~aa--------~~--------ga~~V~aVD~s~~-------al~~a~~N~~-~ngl~~--~~v~  593 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAG--------LG--------GARSTTTVDMSRT-------YLEWAERNLR-LNGLTG--RAHR  593 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHH--------HT--------TCSEEEEEESCHH-------HHHHHHHHHH-HTTCCS--TTEE
T ss_pred             CCcEEEeeechhHHHHHHH--------HC--------CCCEEEEEeCCHH-------HHHHHHHHHH-HcCCCc--cceE
Confidence            4699999999999888766        32        1246999998664       1111111111 112110  0113


Q ss_pred             EEeecCCCccCC-CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          131 FFTGVPGSFYGR-LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~-lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      |+.   ++.+.. ....+++|++++         -|+.+..++...        .     ..+..++...+++.=.+-|+
T Consensus       594 ~i~---~D~~~~l~~~~~~fD~Ii~---------DPP~f~~~~~~~--------~-----~~~~~~~~~~ll~~a~~~Lk  648 (703)
T 3v97_A          594 LIQ---ADCLAWLREANEQFDLIFI---------DPPTFSNSKRME--------D-----AFDVQRDHLALMKDLKRLLR  648 (703)
T ss_dssp             EEE---SCHHHHHHHCCCCEEEEEE---------CCCSBC--------------------CCBHHHHHHHHHHHHHHHEE
T ss_pred             EEe---cCHHHHHHhcCCCccEEEE---------CCccccCCccch--------h-----HHHHHHHHHHHHHHHHHhcC
Confidence            333   665552 224678999997         243333111000        0     01244677777777778899


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||+|++++..+.
T Consensus       649 pgG~L~~s~~~~~  661 (703)
T 3v97_A          649 AGGTIMFSNNKRG  661 (703)
T ss_dssp             EEEEEEEEECCTT
T ss_pred             CCcEEEEEECCcc
Confidence            9999998886543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.64  E-value=0.035  Score=50.22  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|..|..++        ++.         .+|+..|+-.. +      ++...+.+. . ..     +-
T Consensus        50 ~~~~VLEIG~G~G~lT~~La--------~~~---------~~V~aVEid~~-l------i~~a~~~~~-~-~~-----~v   98 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELA--------KNA---------KKVYVIEIDKS-L------EPYANKLKE-L-YN-----NI   98 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHS---------SEEEEEESCGG-G------HHHHHHHHH-H-CS-----SE
T ss_pred             CcCEEEEECCCchHHHHHHH--------hcC---------CEEEEEECCHH-H------HHHHHHHhc-c-CC-----Ce
Confidence            35699999999999999887        431         57888887664 1      111111111 1 11     11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~  163 (269)
                      .++.   |++....+|+.++|.++++...||-+.
T Consensus        99 ~vi~---gD~l~~~~~~~~fD~Iv~NlPy~is~p  129 (295)
T 3gru_A           99 EIIW---GDALKVDLNKLDFNKVVANLPYQISSP  129 (295)
T ss_dssp             EEEE---SCTTTSCGGGSCCSEEEEECCGGGHHH
T ss_pred             EEEE---CchhhCCcccCCccEEEEeCcccccHH
Confidence            3434   899888899999999999988777554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=95.62  E-value=0.007  Score=54.49  Aligned_cols=80  Identities=14%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|..++        ++         ..+|+..|+... .      +....+... ..+.     .+
T Consensus        42 ~~~~VLDiG~G~G~lt~~La--------~~---------~~~v~~vDi~~~-~------~~~a~~~~~-~~~~-----~~   91 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLL--------PL---------AKKVITIDIDSR-M------ISEVKKRCL-YEGY-----NN   91 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHT--------TT---------SSEEEEECSCHH-H------HHHHHHHHH-HTTC-----CC
T ss_pred             CcCEEEEEcCcCcHHHHHHH--------hc---------CCEEEEEECCHH-H------HHHHHHHHH-HcCC-----Cc
Confidence            35799999999999998776        32         257889987543 1      111111111 1121     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ  163 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~  163 (269)
                        +..+-+++....+  .++|+++++...||.+.
T Consensus        92 --v~~~~~D~~~~~~--~~~D~Vv~n~py~~~~~  121 (299)
T 2h1r_A           92 --LEVYEGDAIKTVF--PKFDVCTANIPYKISSP  121 (299)
T ss_dssp             --EEC----CCSSCC--CCCSEEEEECCGGGHHH
T ss_pred             --eEEEECchhhCCc--ccCCEEEEcCCcccccH
Confidence              2223477776544  48999999988887654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=95.39  E-value=0.047  Score=45.11  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=46.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      +..+|+|+|||+|..++.+.        +.        ..-+|+..|+...          +. +.++++.. .+.   .
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~--------~~--------~~~~v~~vD~~~~----------~~-~~a~~~~~~~~~---~   98 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGAL--------LL--------GAKEVICVEVDKE----------AV-DVLIENLGEFKG---K   98 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEESCHH----------HH-HHHHHHTGGGTT---S
T ss_pred             CcCEEEEeeCCCCHHHHHHH--------Hc--------CCCEEEEEECCHH----------HH-HHHHHHHHHcCC---C
Confidence            35799999999999888765        32        1137889987543          11 11222110 111   1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLS  162 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS  162 (269)
                      -.+   +.+++..  +| +++|++++.-.+|+.+
T Consensus        99 ~~~---~~~d~~~--~~-~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           99 FKV---FIGDVSE--FN-SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EEE---EESCGGG--CC-CCCSEEEECCCCSSSS
T ss_pred             EEE---EECchHH--cC-CCCCEEEEcCCCcccc
Confidence            123   3367766  24 5899999977777644

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=95.38  E-value=0.2  Score=45.11  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=16.9

Q ss_pred             CceEEEeecCCCCcccHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      ...+|+|||||.|..|..++
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa   93 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAA   93 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHH
Confidence            35689999999999988666

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=95.30  E-value=0.014  Score=54.40  Aligned_cols=117  Identities=11%  Similarity=0.016  Sum_probs=64.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc-
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ-  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~-  129 (269)
                      ..+|+|+|||+|..++.++        +.        ..-+|+..|+...       .+....+.+. ..+..   ..+ 
T Consensus       221 ~~~VLDl~cG~G~~sl~la--------~~--------g~~~V~~vD~s~~-------al~~a~~n~~-~ngl~---~~~v  273 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSAL--------MG--------GCSQVVSVDTSQE-------ALDIARQNVE-LNKLD---LSKA  273 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHH--------HT--------TCSEEEEEESCHH-------HHHHHHHHHH-HTTCC---GGGE
T ss_pred             CCeEEEeeccCCHHHHHHH--------HC--------CCCEEEEEECCHH-------HHHHHHHHHH-HcCCC---ccce
Confidence            4699999999999999877        32        1247899987543       0111111111 11110   012 


Q ss_pred             eEEeecCCCccCCCC--C--CCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYGRLF--P--RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf--P--~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      .|+.   ++....+-  +  ..++|++++.         |+....++..+.  .             ..+++..++..=.
T Consensus       274 ~~~~---~D~~~~~~~~~~~~~~fD~Ii~d---------pP~~~~~~~~~~--~-------------~~~~~~~~l~~~~  326 (396)
T 3c0k_A          274 EFVR---DDVFKLLRTYRDRGEKFDVIVMD---------PPKFVENKSQLM--G-------------ACRGYKDINMLAI  326 (396)
T ss_dssp             EEEE---SCHHHHHHHHHHTTCCEEEEEEC---------CSSTTTCSSSSS--C-------------CCTHHHHHHHHHH
T ss_pred             EEEE---CCHHHHHHHHHhcCCCCCEEEEC---------CCCCCCChhHHH--H-------------HHHHHHHHHHHHH
Confidence            2333   66655321  1  4689999872         332221122211  0             1134556666667


Q ss_pred             hhhccCCeEEEEeccc
Q 024331          206 EELVAEGRMVLTFLGR  221 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~  221 (269)
                      +.|+|||.++++....
T Consensus       327 ~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          327 QLLNEGGILLTFSCSG  342 (396)
T ss_dssp             HTEEEEEEEEEEECCT
T ss_pred             HhcCCCcEEEEEeCCC
Confidence            7889999999987543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=95.28  E-value=0.025  Score=50.04  Aligned_cols=34  Identities=3%  Similarity=-0.229  Sum_probs=24.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      +++.+|+|+|||+|..+..++        +       . + .+|...|+-.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll--------~-------~-~-~~v~~veid~  104 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLF--------K-------Y-D-THIDFVQADE  104 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHT--------T-------S-S-CEEEEECSCH
T ss_pred             CCCCEEEEEeCCcCHHHHHHH--------h-------C-C-CEEEEEECCH
Confidence            456899999999998766554        2       2 4 6788888754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=94.83  E-value=0.016  Score=50.44  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=45.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|..++        ++.         .+|+..|+...          + .+.++++... .   ++
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~--------~~~---------~~v~~vD~~~~----------~-~~~a~~~~~~-~---~~   77 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELV--------QRC---------NFVTAIEIDHK----------L-CKTTENKLVD-H---DN   77 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHS---------SEEEEECSCHH----------H-HHHHHHHTTT-C---CS
T ss_pred             CCCEEEEEeCCchHHHHHHH--------HcC---------CeEEEEECCHH----------H-HHHHHHhhcc-C---CC
Confidence            45799999999999998877        442         57888887553          1 1222222211 1   12


Q ss_pred             eEEeecCCCccCCCCCC-CceeeEecccccc
Q 024331          130 CFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQ  159 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~-~Svd~~~Ss~alH  159 (269)
                        +..+-|++....+|+ .++ .++|+...+
T Consensus        78 --v~~~~~D~~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           78 --FQVLNKDILQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             --EEEECCCGGGCCCCSSCCC-EEEEECCGG
T ss_pred             --eEEEEChHHhCCcccCCCe-EEEEeCCcc
Confidence              222448888888885 455 466654333

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=94.79  E-value=0.039  Score=55.92  Aligned_cols=109  Identities=14%  Similarity=0.097  Sum_probs=57.8

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           20 SNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        20 ~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      +...+|+++..+.+++.++         ..+..+|+|+|||+|+-+...+...-.+=.+ . +.+.....+.||..+--.
T Consensus       388 Ry~~Y~~AI~~al~d~~~~---------~~~~~VVldVGaGtGpLs~~al~A~~~a~~~-~-~~~~~~~~~kVyAVEknp  456 (745)
T 3ua3_A          388 KYDVYGEAVVGALKDLGAD---------GRKTVVIYLLGGGRGPIGTKILKSEREYNNT-F-RQGQESLKVKLYIVEKNP  456 (745)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---------CCSEEEEEEESCTTCHHHHHHHHHHHHHHHH-H-STTSCCCEEEEEEEECCH
T ss_pred             hHHHHHHHHHHHHHHhhcc---------cCCCcEEEEECCCCCHHHHHHHHHHHHhCcc-c-cccccccccEEEEEeCCh
Confidence            4455555554444443321         2246899999999998876555332211101 0 111233458999999843


Q ss_pred             CchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCC-----CCceeeEec
Q 024331          100 NDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFP-----RNSVHLFHS  154 (269)
Q Consensus       100 NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP-----~~Svd~~~S  154 (269)
                      |-.    ..+.     .....+++    ..  |.-+.|+..+--+|     ..-+|+++|
T Consensus       457 ~A~----~~l~-----~~~~Ng~~----d~--VtVI~gd~eev~lp~~~~~~ekVDIIVS  501 (745)
T 3ua3_A          457 NAI----VTLK-----YMNVRTWK----RR--VTIIESDMRSLPGIAKDRGFEQPDIIVS  501 (745)
T ss_dssp             HHH----HHHH-----HHHHHTTT----TC--SEEEESCGGGHHHHHHHTTCCCCSEEEE
T ss_pred             HHH----HHHH-----HHHhcCCC----Ce--EEEEeCchhhcccccccCCCCcccEEEE
Confidence            311    1111     11112321    12  33345777776676     688999999

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=94.51  E-value=0.029  Score=49.70  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVASEL   72 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~i   72 (269)
                      ++++|+|+|||+|.|++.+++..
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~   82 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAF   82 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHH
Confidence            57999999999999999887433

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=94.26  E-value=0.058  Score=49.13  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++. +        +         ...+|+..|+...
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a--------~---------~~~~V~~vD~s~~  227 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-C--------K---------NAKKIYAIDINPH  227 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-T--------T---------TSSEEEEEESCHH
T ss_pred             CCCEEEEccCccCHHHHh-c--------c---------CCCEEEEEECCHH
Confidence            357999999999999886 6        2         1368999997543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.93  E-value=0.14  Score=45.17  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CceEEEeecCCCCcccHHHHH------------HHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVAS------------ELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTI  105 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntL  105 (269)
                      ..-+|+|+|||+|..|..+++            ..++.+++++.    ..+.++++..|...-||..+
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~   92 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYN----QQKNITIYQNDALQFDFSSV   92 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHT----TCTTEEEEESCTTTCCGGGS
T ss_pred             CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHh----hCCCcEEEEcchHhCCHHHh
Confidence            357999999999999998874            45566666552    13568999999888887654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=93.84  E-value=0.25  Score=44.66  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|.-|+.++        +..      .+.-+|+.+|+-..
T Consensus       103 g~~VLDlcaG~G~kt~~la--------~~~------~~~g~V~a~D~~~~  138 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLA--------ALL------KNQGKIFAFDLDAK  138 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHH--------HHH------TTCSEEEEEESCHH
T ss_pred             CCEEEEeCCChhHHHHHHH--------HHh------CCCCEEEEEeCCHH
Confidence            4699999999999999887        432      13478999998554

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=93.70  E-value=0.025  Score=50.62  Aligned_cols=76  Identities=12%  Similarity=0.003  Sum_probs=48.0

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF  132 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~  132 (269)
                      +|+|+|||+|..|..++        ++.         .+|+..|+-.. +      +    +.++++...     .++  
T Consensus        49 ~VLEIG~G~G~lt~~L~--------~~~---------~~V~avEid~~-~------~----~~l~~~~~~-----~~v--   93 (271)
T 3fut_A           49 PVFEVGPGLGALTRALL--------EAG---------AEVTAIEKDLR-L------R----PVLEETLSG-----LPV--   93 (271)
T ss_dssp             CEEEECCTTSHHHHHHH--------HTT---------CCEEEEESCGG-G------H----HHHHHHTTT-----SSE--
T ss_pred             eEEEEeCchHHHHHHHH--------HcC---------CEEEEEECCHH-H------H----HHHHHhcCC-----CCE--
Confidence            99999999999998887        431         57888887664 1      1    223322211     122  


Q ss_pred             eecCCCccCCCCCCC-ceeeEeccc--------ccccccc
Q 024331          133 TGVPGSFYGRLFPRN-SVHLFHSSY--------SLQWLSQ  163 (269)
Q Consensus       133 ~~vpgSFy~~lfP~~-Svd~~~Ss~--------alHWLS~  163 (269)
                      ..+-|++....+|+. ..|.++++.        -+|||.+
T Consensus        94 ~vi~~D~l~~~~~~~~~~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A           94 RLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EEEESCGGGSCGGGSCTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred             EEEECChhhCChhhccCccEEEecCcccccHHHHHHHhcC
Confidence            223388888777753 578888765        3456665

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=93.68  E-value=0.078  Score=50.21  Aligned_cols=33  Identities=24%  Similarity=0.103  Sum_probs=25.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .-+|+|+|||+|..++.++        +.         ..+|+..|....
T Consensus       291 ~~~VLDlgcG~G~~sl~la--------~~---------~~~V~gvD~s~~  323 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLA--------KR---------GFNVKGFDSNEF  323 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHH--------HT---------TCEEEEEESCHH
T ss_pred             CCEEEEeeccchHHHHHHH--------Hc---------CCEEEEEECCHH
Confidence            4699999999999998776        32         147889887554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=93.36  E-value=0.59  Score=43.44  Aligned_cols=90  Identities=14%  Similarity=0.046  Sum_probs=48.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHH-----------------------HHHHHHHHhcCCCCCcceEEecCCCCCchHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVASELI-----------------------KVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIF  106 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii-----------------------~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF  106 (269)
                      ...+|+|.|||+|..++..+....                       +.+++.........+..+|+..|+-..   .  
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~---a--  269 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE---S--  269 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH---H--
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH---H--
Confidence            357899999999998877664321                       222222111112235578999998654   0  


Q ss_pred             HhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEec
Q 024331          107 RSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                        +..-...+. ..|..-   .-.|..   +++.....| .++|++++
T Consensus       270 --i~~Ar~Na~-~~gl~~---~i~~~~---~D~~~l~~~-~~~D~Iv~  307 (385)
T 3ldu_A          270 --IDIARENAE-IAGVDE---YIEFNV---GDATQFKSE-DEFGFIIT  307 (385)
T ss_dssp             --HHHHHHHHH-HHTCGG---GEEEEE---CCGGGCCCS-CBSCEEEE
T ss_pred             --HHHHHHHHH-HcCCCC---ceEEEE---CChhhcCcC-CCCcEEEE
Confidence              111111111 112100   012333   788876654 58999999

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.22  E-value=0.99  Score=40.69  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=25.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|||||.|..+..++        ++       .+.-.|+..|+-.+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa--------~~-------~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAA--------SL-------KNVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHH--------TS-------TTEEEEEEECCCCT
T ss_pred             CCCEEEEeCCCCCHHHHHHH--------Hh-------cCCCeeeeEEeccC
Confidence            35699999999999988666        22       13455667777654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=92.91  E-value=0.81  Score=42.70  Aligned_cols=87  Identities=11%  Similarity=0.051  Sum_probs=48.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHH-----------------------HHHHHHHHhcCCCCCcceEEecCCCCCchHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVASELI-----------------------KVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIF  106 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii-----------------------~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF  106 (269)
                      ...+|+|.+||+|..++..+....                       +.+++.....-...+..+|+..|.-..      
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~------  274 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDAR------  274 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH------
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHH------
Confidence            357899999999988776654322                       122222111112235578999997654      


Q ss_pred             HhhHHHHHHHHH---hcCCCCCCCCceEEeecCCCccCCCCCCCceeeEec
Q 024331          107 RSLASFQKILRK---QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       107 ~~l~~~~~~~~~---~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                          +. +..+.   ..|..-   .-.|..   +++.....| .++|++++
T Consensus       275 ----al-~~Ar~Na~~~gl~~---~I~~~~---~D~~~~~~~-~~fD~Iv~  313 (393)
T 3k0b_A          275 ----LI-EIAKQNAVEAGLGD---LITFRQ---LQVADFQTE-DEYGVVVA  313 (393)
T ss_dssp             ----HH-HHHHHHHHHTTCTT---CSEEEE---CCGGGCCCC-CCSCEEEE
T ss_pred             ----HH-HHHHHHHHHcCCCC---ceEEEE---CChHhCCCC-CCCCEEEE
Confidence                21 11211   122110   113444   788876655 48999998

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=92.89  E-value=1.3  Score=45.65  Aligned_cols=129  Identities=13%  Similarity=0.070  Sum_probs=69.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-C--CCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-G--SASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~--~~~~~  126 (269)
                      ...+|+|.|||+|...+.++        ++..    .....+++..|+-..=.       ........... +  .+.  
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA--------~~l~----ei~~~~IyGvEIDp~Al-------~LAK~RlNL~lN~LlhGi--  379 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVS--------AGFN----NVMPRQIWANDIETLFL-------ELLSIRLGLLFPQLVSSN--  379 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHH--------HTST----TCCGGGEEEECSCGGGH-------HHHHHHHHTTSTTTCBTT--
T ss_pred             CCCEEEECCCCccHHHHHHH--------HHhc----ccCCCeEEEEECCHHHH-------HHHHHHHHHHHhhhhcCC--
Confidence            46799999999998766554        2211    11237899999866511       00000010000 0  111  


Q ss_pred             CCceEEeecCCCccC-CCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHH----------
Q 024331          127 AGQCFFTGVPGSFYG-RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQR----------  195 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~-~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~----------  195 (269)
                       ....+  ..++|.. ...+...+|++++         -|+-..         ....+...+.|...+..          
T Consensus       380 -~~~~I--~~dD~L~~~~~~~~kFDVVIg---------NPPYg~---------~~~~~~e~kd~~~r~~~g~p~~p~s~~  438 (878)
T 3s1s_A          380 -NAPTI--TGEDVCSLNPEDFANVSVVVM---------NPPYVS---------GVTDPAIKRKFAHKIIQLTGNRPQTLF  438 (878)
T ss_dssp             -BCCEE--ECCCGGGCCGGGGTTEEEEEE---------CCBCCS---------SCCCHHHHHHHHHHHHHHHSSCCSSCS
T ss_pred             -CcceE--EecchhcccccccCCCCEEEE---------CCCccc---------cccchhhhhhHHHHhhhhccccccccc
Confidence             11122  2355655 2445678999999         355432         11122333334332222          


Q ss_pred             ----HHHHHHhhhhhhhccCCeEEEEecc
Q 024331          196 ----DFSLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       196 ----D~~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                          -...|+..=.+-|+|||++++.++.
T Consensus       439 G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          439 GQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             SSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             cccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence                1445777767789999999998864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=92.72  E-value=0.22  Score=46.91  Aligned_cols=73  Identities=18%  Similarity=0.115  Sum_probs=44.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|..++.++        +.         ..+|+..|....       .+......+. ..+  .  .+-
T Consensus       286 ~~~~VLDlgcG~G~~~~~la--------~~---------~~~V~gvD~s~~-------al~~A~~n~~-~~~--~--~~v  336 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLA--------TQ---------AASVVGVEGVPA-------LVEKGQQNAR-LNG--L--QNV  336 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHH--------TT---------SSEEEEEESCHH-------HHHHHHHHHH-HTT--C--CSE
T ss_pred             CCCEEEECCCCCCHHHHHHH--------hh---------CCEEEEEeCCHH-------HHHHHHHHHH-HcC--C--Cce
Confidence            34699999999999999877        22         267899987654       1111111111 112  1  012


Q ss_pred             eEEeecCCCccC----CCCCCCceeeEec
Q 024331          130 CFFTGVPGSFYG----RLFPRNSVHLFHS  154 (269)
Q Consensus       130 ~f~~~vpgSFy~----~lfP~~Svd~~~S  154 (269)
                      .|+.   +++..    ..++++++|++++
T Consensus       337 ~f~~---~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          337 TFYH---ENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             EEEE---CCTTSCCSSSGGGTTCCSEEEE
T ss_pred             EEEE---CCHHHHhhhhhhhcCCCCEEEE
Confidence            3444   56655    3467789999998

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=92.35  E-value=0.68  Score=45.21  Aligned_cols=92  Identities=13%  Similarity=0.025  Sum_probs=44.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      .+.+|+|.+||||...+.++..+.+.-.+............+++..|+-..    ..+.-.+.   +.- .|..    .+
T Consensus       244 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~----~~~lA~~N---l~l-~gi~----~~  311 (544)
T 3khk_A          244 YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPT----TWKLAAMN---MVI-RGID----FN  311 (544)
T ss_dssp             CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHH----HHHHHHHH---HHH-TTCC----CB
T ss_pred             CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHH----HHHHHHHH---HHH-hCCC----cc
Confidence            345999999999987666554443222111000000001478898887432    11100000   000 1111    12


Q ss_pred             eEEeecCCC-ccCCCCCCCceeeEecc
Q 024331          130 CFFTGVPGS-FYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       130 ~f~~~vpgS-Fy~~lfP~~Svd~~~Ss  155 (269)
                      +  .-+.|+ +....++...+|+++++
T Consensus       312 i--~i~~gDtL~~~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          312 F--GKKNADSFLDDQHPDLRADFVMTN  336 (544)
T ss_dssp             C--CSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred             c--ceeccchhcCcccccccccEEEEC
Confidence            1  112344 45556788899999994

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=91.83  E-value=0.88  Score=42.39  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=17.0

Q ss_pred             CceEEEeecCCCCcccHHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVAS   70 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~   70 (269)
                      ...+|+|.+||+|...+..+.
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~  214 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAM  214 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHH
Confidence            357899999999988776664

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=90.79  E-value=0.4  Score=45.15  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=17.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHH
Q 024331           51 KVAIADLGCSSGPNTLLVASEL   72 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~i   72 (269)
                      ..+|+|.|||+|...+.+.+.+
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l  193 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYM  193 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHH
T ss_pred             CCEEeccCCCcchHHHHHHHHH
Confidence            4699999999998877666443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=90.50  E-value=2.6  Score=38.23  Aligned_cols=38  Identities=21%  Similarity=0.134  Sum_probs=27.8

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+..+|+|+|||.|..|..++        ++       .+...|+..|+-.+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~--------~~-------~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAA--------AQ-------KEVMSVKGYTLGIE  116 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHH--------TS-------TTEEEEEEECCCCT
T ss_pred             CCCCCEEEEcCCCCCHHHHHHH--------Hh-------cCCceeeeEEeccc
Confidence            3456899999999999988777        32       13456777888655

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=90.19  E-value=0.21  Score=45.11  Aligned_cols=19  Identities=16%  Similarity=0.184  Sum_probs=17.4

Q ss_pred             ceEEEeecCCCCcccHHHH
Q 024331           51 KVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~   69 (269)
                      .-+|+|+|||+|..|+.++
T Consensus        27 g~~vLD~g~G~G~~s~~la   45 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAIL   45 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHH
T ss_pred             CCEEEEEeCCcCHHHHHHH
Confidence            4699999999999999888

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=89.97  E-value=0.4  Score=42.00  Aligned_cols=54  Identities=11%  Similarity=0.036  Sum_probs=33.0

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHH----------HHHHHHHhcCCCCCcceEEecCCCCCchHHHH
Q 024331           51 KVAIADLGCSSGPNTLLVASELIK----------VVNKICDKLGSQLPEFQVFLNDLPGNDFNTIF  106 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~----------~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF  106 (269)
                      .-+|+|+|||+|..|. +. ..-+          .+.+..++.-...+.++++..|.-.-||..+|
T Consensus        22 ~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             cCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence            4689999999999999 43 2110          11111111111124688899888887887665

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=89.80  E-value=0.86  Score=42.69  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhhccc-----CCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHH
Q 024331           30 SIAKPITEEAMTKLFCS-----TSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT  104 (269)
Q Consensus        30 ~~~~~~l~~ai~~~~~~-----~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFnt  104 (269)
                      +++.=.|++|+......     ......+++|+||+.|.-|..++        ++         ...|+..|.-.=|   
T Consensus       186 SRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~--------~r---------g~~V~aVD~~~l~---  245 (375)
T 4auk_A          186 SRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLV--------KR---------NMWVYSVDNGPMA---  245 (375)
T ss_dssp             CTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHH--------HT---------TCEEEEECSSCCC---
T ss_pred             CHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHH--------HC---------CCEEEEEEhhhcC---
Confidence            33444567776654211     13346899999999999998876        43         3689999953211   


Q ss_pred             HHHhhHHHHHHHHHhcCCCCCCCCc-eEEeecCCCccCCCCCCCceeeEecccccc
Q 024331          105 IFRSLASFQKILRKQLGSASGAAGQ-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ  159 (269)
Q Consensus       105 LF~~l~~~~~~~~~~~~~~~~~~~~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH  159 (269)
                           +    ++...        +. .+   +-++.+....+.+.+|+++|=.+.+
T Consensus       246 -----~----~l~~~--------~~V~~---~~~d~~~~~~~~~~~D~vvsDm~~~  281 (375)
T 4auk_A          246 -----Q----SLMDT--------GQVTW---LREDGFKFRPTRSNISWMVCDMVEK  281 (375)
T ss_dssp             -----H----HHHTT--------TCEEE---ECSCTTTCCCCSSCEEEEEECCSSC
T ss_pred             -----h----hhccC--------CCeEE---EeCccccccCCCCCcCEEEEcCCCC
Confidence                 1    12110        12 33   3478888888888999999955443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=89.15  E-value=0.33  Score=41.66  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=26.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..|..++        ++.         .+|+..|+...
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~--------~~~---------~~v~~id~~~~   62 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLA--------KIS---------KQVTSIELDSH   62 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHH--------HHS---------SEEEESSSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHH--------HhC---------CeEEEEECCHH
Confidence            45799999999999999887        431         46777776554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=89.09  E-value=0.39  Score=39.55  Aligned_cols=35  Identities=11%  Similarity=0.184  Sum_probs=27.2

Q ss_pred             CceEEEeecCCCC-cccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSG-PNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G-~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .+.+|+|+|||.| .|+..+.        +.        ..+.|...|+-..
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La--------~~--------~g~~V~atDInp~   70 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIR--------KH--------SKVDLVLTDIKPS   70 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHH--------HH--------SCCEEEEECSSCS
T ss_pred             CCCcEEEEccCCChHHHHHHH--------Hh--------CCCeEEEEECCcc
Confidence            3579999999999 4888777        53        2488999997554

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=88.85  E-value=0.46  Score=42.32  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=18.4

Q ss_pred             CceEEEeecCCCCcccHHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVAS   70 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~   70 (269)
                      ...+|+|+|||+|..|..+++
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~   62 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIA   62 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHH
T ss_pred             CcCEEEEEccccHHHHHHHHH
Confidence            357999999999999998884

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=88.67  E-value=0.18  Score=44.15  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=18.7

Q ss_pred             CceEEEeecCCCCcccHHHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVASE   71 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~   71 (269)
                      ..-+|+|+|||+|..|..+++.
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~   52 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH   52 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS
T ss_pred             CcCEEEEEcCchHHHHHHHHHc
Confidence            3579999999999999988754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=87.85  E-value=0.37  Score=43.10  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=27.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .-+|+|+|||+|+.|+.++        ++        ...+|+..|+-..
T Consensus       126 g~~VlD~~aG~G~~~i~~a--------~~--------g~~~V~avD~np~  159 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIA--------VY--------GKAKVIAIEKDPY  159 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHH--------HH--------TCCEEEEECCCHH
T ss_pred             CCEEEEecCcCcHHHHHHH--------Hh--------cCCeEEEEECCHH
Confidence            5799999999999999877        44        2358999998544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=87.39  E-value=5.3  Score=38.86  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=26.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG   99 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~   99 (269)
                      ...+|+|.+||||...+.+.+        ...    ..+..+++..|+-.
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~--------~l~----~~~~~~i~G~Eid~  258 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKR--------YSR----QPQTVVYFGQELNT  258 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHH--------HCS----CTTTCEEEEEESCH
T ss_pred             CCCEEeecccchhHHHHHHHH--------HHH----hccCceEEEEECcH
Confidence            457999999999988776663        211    12358899988744

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=87.32  E-value=1.2  Score=40.82  Aligned_cols=62  Identities=23%  Similarity=0.361  Sum_probs=38.7

Q ss_pred             CCCceEEEeecC------CCCcccHHHHHHHHHHHHHHHHhcCCCCCc-ceEEecCCCCCchHHHHHhhHHHHHHHHHhc
Q 024331           48 SPTKVAIADLGC------SSGPNTLLVASELIKVVNKICDKLGSQLPE-FQVFLNDLPGNDFNTIFRSLASFQKILRKQL  120 (269)
Q Consensus        48 ~~~~~~IaD~GC------s~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~-~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~  120 (269)
                      -|...+|+|+|+      +.|.   .+       + +++      .|+ ..|+.+||-  |+.+                
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS---~V-------L-r~~------~p~g~~VVavDL~--~~~s----------------  151 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT---AV-------L-RQW------LPTGTLLVDSDLN--DFVS----------------  151 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH---HH-------H-HHH------SCTTCEEEEEESS--CCBC----------------
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH---HH-------H-HHh------CCCCcEEEEeeCc--cccc----------------
Confidence            356799999996      6665   11       2 333      144 588888874  3310                


Q ss_pred             CCCCCCCCceEEeecCCCccCCCCCCCceeeEec
Q 024331          121 GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHS  154 (269)
Q Consensus       121 ~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~S  154 (269)
                        .    .++++.   |++.. +.....+|++.|
T Consensus       152 --d----a~~~Iq---GD~~~-~~~~~k~DLVIS  175 (344)
T 3r24_A          152 --D----ADSTLI---GDCAT-VHTANKWDLIIS  175 (344)
T ss_dssp             --S----SSEEEE---SCGGG-EEESSCEEEEEE
T ss_pred             --C----CCeEEE---ccccc-cccCCCCCEEEe
Confidence              0    245655   77643 555688999999

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=84.31  E-value=5.7  Score=39.82  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=16.9

Q ss_pred             CceEEEeecCCCCcccHHHHH
Q 024331           50 TKVAIADLGCSSGPNTLLVAS   70 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~   70 (269)
                      ...+|+|.+||||...+..+.
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~  210 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAM  210 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHH
Confidence            346899999999988776654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=80.37  E-value=0.88  Score=42.28  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|+|||+|.-++.++        ++.       +..+|+++|+-..
T Consensus        48 ~~~VLDl~aGtG~~~l~~a--------~~~-------~~~~V~avDi~~~   82 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFA--------LET-------PAEEVWLNDISED   82 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHH--------HHS-------SCSEEEEEESCHH
T ss_pred             CCEEEECCCchhHHHHHHH--------HhC-------CCCeEEEEECCHH
Confidence            5799999999999999887        432       3467999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	1e-113

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  328 bits (842), Expect = e-113
 Identities = 153/250 (61%), Positives = 183/250 (73%), Gaps = 13/250 (5%)

Query: 1   MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTK-VAIADLGC 59
           M+V QVLHM GG G  SYA NS +Q +VISI KPITE A+T L+   + T  +AIADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNTLLVASELIKVVNKICDKLGSQ-LPEFQVFLNDLPGNDFNTIFRSLASFQKILRK 118
           SSGPN L   +ELIK V ++  K+G +  PE+Q+FLNDLPGNDFN IFRSL     +   
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--- 117

Query: 119 QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMA 178
                    G CF  GVPGSFYGRLFPRN++H  HSSYSL WLSQVP G+ESNKGNI+MA
Sbjct: 118 --------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA 169

Query: 179 STSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL 238
           +T P  VL AYY+QFQ D +LFL+CR++E+V  GRMVLT LGR+S+D +S ECC IW+LL
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL 229

Query: 239 ATALNNMVSE 248
           A ALN MVSE
Sbjct: 230 AMALNQMVSE 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.35
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.07
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.07
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.04
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.98
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.98
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.96
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.95
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.95
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.94
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.89
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.88
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.84
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.83
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.83
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.81
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.79
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.79
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.75
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.71
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.68
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.53
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.52
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.48
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.46
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.46
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.44
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.41
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.39
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.36
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.35
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.31
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.3
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.22
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.2
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.19
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.17
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.15
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.06
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.0
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.97
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.96
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.85
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.82
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.7
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.57
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.54
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.41
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.36
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.13
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.93
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.58
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.51
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	96.39
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.34
d2h00a1	250	Methyltransferase 10 domain containing protein MET	95.6
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.35
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	94.07
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.8
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	91.97
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	91.54
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	91.38
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	91.03
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	90.23
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	89.61
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	87.95
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	87.87
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	87.8
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	87.63
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	81.47
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	80.85
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	80.74

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=1.6e-88  Score=636.94  Aligned_cols=256  Identities=61%  Similarity=1.020  Sum_probs=241.0

Q ss_pred             CcccceeeccCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhccc-CCCCceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 024331            1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCS-TSPTKVAIADLGCSSGPNTLLVASELIKVVNKI   79 (269)
Q Consensus         1 ~~~~~~l~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~-~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~   79 (269)
                      |+++++|||+||+|++||++||.+|+++++.++|+|++||.+++.. ..+++++|||||||+|+||+.+++.||++|+++
T Consensus         1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~   80 (359)
T d1m6ex_           1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL   80 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred             CCccEeeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999998754 357889999999999999999999999999999


Q ss_pred             HHhcCC-CCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccc
Q 024331           80 CDKLGS-QLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSL  158 (269)
Q Consensus        80 ~~~~~~-~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~al  158 (269)
                      |++.+. ++|+|||||||||+||||+||++||...        ..   .++||++|||||||+||||++||||+||++||
T Consensus        81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~--------~~---~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~al  149 (359)
T d1m6ex_          81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--------DV---DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSL  149 (359)
T ss_dssp             HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--------SC---TTCEEEEEEESCSSSCCSCTTCBSCEEEESCT
T ss_pred             HHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc--------cC---CCCeEEEecCCchhhhcCCCCceEEeeehhhh
Confidence            988774 5799999999999999999999997531        11   15799999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCCCCCCChhhhHHHHHH
Q 024331          159 QWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL  238 (269)
Q Consensus       159 HWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l  238 (269)
                      |||||+|+.+.+|||+||+.++++++|.+||++||++||.+||++||+||+|||+|+++++||+++++.+++.+.+|+++
T Consensus       150 HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l  229 (359)
T d1m6ex_         150 MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLL  229 (359)
T ss_dssp             TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHH
T ss_pred             hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888877777899999


Q ss_pred             HHHHHHHHHccCcccccccceeccccccc
Q 024331          239 ATALNNMVSEVTKSFLLLIVFNQLNYKLK  267 (269)
Q Consensus       239 ~~~l~~mv~eG~i~~~~~d~FnlP~~~~~  267 (269)
                      +++|+|||.||+|++|++|+||+|.|.+.
T Consensus       230 ~~al~dmv~eGlI~eek~dsfn~P~Y~ps  258 (359)
T d1m6ex_         230 AMALNQMVSEGLIEEEKMDKFNIPQYTPS  258 (359)
T ss_dssp             HHHHHHHHHTTCSCCSTTGGGCCCCBCCC
T ss_pred             HHHHHHHHHcCCCCHHHHHhccCccccCC
Confidence            99999999999999999999999999874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=1.9e-12  Score=108.28  Aligned_cols=127  Identities=17%  Similarity=0.223  Sum_probs=85.8

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 024331           19 ASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP   98 (269)
Q Consensus        19 ~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP   98 (269)
                      +.+...++.-+....+++++        ..++.-+|+|+|||+|..|..++        +.         ..+|+..|+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~--------~l~~~~~ILDiGcG~G~~~~~la--------~~---------~~~v~giD~S   68 (226)
T d1ve3a1          14 DINSQEYRSRIETLEPLLMK--------YMKKRGKVLDLACGVGGFSFLLE--------DY---------GFEVVGVDIS   68 (226)
T ss_dssp             CTTSHHHHHHHHHHHHHHHH--------SCCSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESC
T ss_pred             HhhHHHHHHHHHHHHHHHHH--------hcCCCCEEEEECCCcchhhhhHh--------hh---------hccccccccc
Confidence            33445555666677776665        22345799999999999887665        32         3689999986


Q ss_pred             CCchHHHHHhhHHHHHHHHH---hcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcce
Q 024331           99 GNDFNTIFRSLASFQKILRK---QLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNI  175 (269)
Q Consensus        99 ~NDFntLF~~l~~~~~~~~~---~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i  175 (269)
                      .+          ++. .+++   ..+.     ...++.   +++....+|++|+|+++|+.++||++.            
T Consensus        69 ~~----------~i~-~ak~~~~~~~~-----~~~~~~---~d~~~l~~~~~~fD~I~~~~~l~~~~~------------  117 (226)
T d1ve3a1          69 ED----------MIR-KAREYAKSRES-----NVEFIV---GDARKLSFEDKTFDYVIFIDSIVHFEP------------  117 (226)
T ss_dssp             HH----------HHH-HHHHHHHHTTC-----CCEEEE---CCTTSCCSCTTCEEEEEEESCGGGCCH------------
T ss_pred             cc----------chh-hhhhhhccccc-----cccccc---cccccccccCcCceEEEEecchhhCCh------------
Confidence            55          221 1111   1121     123444   788889999999999999999999632            


Q ss_pred             EEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecc
Q 024331          176 FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       176 ~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                                         .|+.++|+.=++-|||||++++.+..
T Consensus       118 -------------------~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         118 -------------------LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             -------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -------------------hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence                               34445555556677899999998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.07  E-value=1.4e-10  Score=97.53  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      .+..+|+|+|||+|..|..++        ++.         .+|+..|+..+          +. +.++++. ..++   
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~--------~~~---------~~v~gvD~s~~----------~i-~~A~~~~~~~~~---   62 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFA--------PFV---------KKVVAFDLTED----------IL-KVARAFIEGNGH---   62 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHG--------GGS---------SEEEEEESCHH----------HH-HHHHHHHHHTTC---
T ss_pred             CCcCEEEEecccCcHHHHHHH--------HhC---------CEEEEEECCHH----------HH-hhhhhccccccc---
Confidence            346899999999999887665        331         46888888665          22 1121111 0111   


Q ss_pred             Cc-eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          128 GQ-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       128 ~~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      ++ -|+.   +++....||++|+|+++|..++||+.+                  +..+.        +.+       .+
T Consensus        63 ~~i~~~~---~d~~~l~~~~~~fD~v~~~~~l~~~~d------------------~~~~l--------~~~-------~r  106 (231)
T d1vl5a_          63 QQVEYVQ---GDAEQMPFTDERFHIVTCRIAAHHFPN------------------PASFV--------SEA-------YR  106 (231)
T ss_dssp             CSEEEEE---CCC-CCCSCTTCEEEEEEESCGGGCSC------------------HHHHH--------HHH-------HH
T ss_pred             ccccccc---cccccccccccccccccccccccccCC------------------HHHHH--------HHH-------HH
Confidence            22 3444   889999999999999999999999743                  11111        222       56


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      -|+|||++++......
T Consensus       107 ~LkpgG~l~i~~~~~~  122 (231)
T d1vl5a_         107 VLKKGGQLLLVDNSAP  122 (231)
T ss_dssp             HEEEEEEEEEEEEEBC
T ss_pred             hcCCCcEEEEEeCCCC
Confidence            6779999999876654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=1.8e-10  Score=97.98  Aligned_cols=106  Identities=17%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHH--HHHHhcCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQK--ILRKQLGSASGAA  127 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~--~~~~~~~~~~~~~  127 (269)
                      ...+|+|+|||+|..|..+.        ++.         .+|+..|+..+          ++..  +..+..+..    
T Consensus        16 ~~~rILDiGcGtG~~~~~la--------~~~---------~~v~gvD~S~~----------~l~~A~~~~~~~~~~----   64 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFS--------PYV---------QECIGVDATKE----------MVEVASSFAQEKGVE----   64 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHG--------GGS---------SEEEEEESCHH----------HHHHHHHHHHHHTCC----
T ss_pred             CCCEEEEeCCcCcHHHHHHH--------HhC---------CeEEEEeCChh----------hhhhhhhhhcccccc----
Confidence            35799999999999988776        431         46888888775          2211  111112221    


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .-.|+.   ++....+||++|+|+++|+.++||+.+.                                 ..+|+.=.+-
T Consensus        65 ~~~~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~d~---------------------------------~~~l~~~~r~  108 (234)
T d1xxla_          65 NVRFQQ---GTAESLPFPDDSFDIITCRYAAHHFSDV---------------------------------RKAVREVARV  108 (234)
T ss_dssp             SEEEEE---CBTTBCCSCTTCEEEEEEESCGGGCSCH---------------------------------HHHHHHHHHH
T ss_pred             cccccc---cccccccccccccceeeeeceeecccCH---------------------------------HHHHHHHHHe
Confidence            123444   7888899999999999999999996331                                 1223333567


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |||||+++++.....
T Consensus       109 LkpgG~~~~~~~~~~  123 (234)
T d1xxla_         109 LKQDGRFLLVDHYAP  123 (234)
T ss_dssp             EEEEEEEEEEEECBC
T ss_pred             eCCCcEEEEEEcCCC
Confidence            779999999876654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.04  E-value=7.8e-10  Score=96.77  Aligned_cols=112  Identities=15%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .++..+|+|+|||+|..+..++        +++        ..+|+..|+...        +-..........|..    
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~--------~i~~a~~~~~~~gl~----  116 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLV--------RKF--------GVSIDCLNIAPV--------QNKRNEEYNNQAGLA----  116 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHH--------HHHHHHHHHHHHTCT----
T ss_pred             CCCCCEEEEeCCCCcHHHhhhh--------ccC--------CcEEEEEeccch--------hhhhhhccccccccc----
Confidence            3456899999999998877766        553        367899997765        111111111122211    


Q ss_pred             Cce-EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          128 GQC-FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       128 ~~~-f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      .++ |+.   +++.+.+||++|+|+++|..++||+..                                 ...+|+.=.+
T Consensus       117 ~~v~~~~---~d~~~l~~~~~sfD~V~~~~~l~h~~d---------------------------------~~~~l~~~~~  160 (282)
T d2o57a1         117 DNITVKY---GSFLEIPCEDNSYDFIWSQDAFLHSPD---------------------------------KLKVFQECAR  160 (282)
T ss_dssp             TTEEEEE---CCTTSCSSCTTCEEEEEEESCGGGCSC---------------------------------HHHHHHHHHH
T ss_pred             ccccccc---cccccccccccccchhhccchhhhccC---------------------------------HHHHHHHHHH
Confidence            123 444   899999999999999999999988532                                 1122333367


Q ss_pred             hhccCCeEEEEecccCC
Q 024331          207 ELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~  223 (269)
                      -|+|||+++++......
T Consensus       161 ~LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         161 VLKPRGVMAITDPMKED  177 (282)
T ss_dssp             HEEEEEEEEEEEEEECT
T ss_pred             hcCCCcEEEEEEeecCC
Confidence            78899999998765543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=7.4e-10  Score=96.98  Aligned_cols=100  Identities=20%  Similarity=0.222  Sum_probs=72.0

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      ..++.+|+|+|||+|..+..+.        ++.       |+.+++..|+...          +. +..+++ ..     
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~--------~~~-------~~~~~~giD~s~~----------~~-~~a~~~-~~-----  129 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFA--------DAL-------PEITTFGLDVSKV----------AI-KAAAKR-YP-----  129 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHH--------HTC-------TTSEEEEEESCHH----------HH-HHHHHH-CT-----
T ss_pred             CCCCCEEEEeCCCCcHHHHHHH--------HHC-------CCCEEEEecchHh----------hh-hhhhcc-cc-----
Confidence            4467899999999999988777        542       6789999998654          22 112222 11     


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .-.|+.   ++....+||++|+|++++..++|++.                         +.               +|.
T Consensus       130 ~~~~~~---~d~~~l~~~~~sfD~v~~~~~~~~~~-------------------------e~---------------~rv  166 (268)
T d1p91a_         130 QVTFCV---ASSHRLPFSDTSMDAIIRIYAPCKAE-------------------------EL---------------ARV  166 (268)
T ss_dssp             TSEEEE---CCTTSCSBCTTCEEEEEEESCCCCHH-------------------------HH---------------HHH
T ss_pred             ccccee---eehhhccCCCCCEEEEeecCCHHHHH-------------------------HH---------------HHH
Confidence            124544   88899999999999999977766621                         22               456


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |||||+|+++.++.+
T Consensus       167 LkpgG~l~~~~p~~~  181 (268)
T d1p91a_         167 VKPGGWVITATPGPR  181 (268)
T ss_dssp             EEEEEEEEEEEECTT
T ss_pred             hCCCcEEEEEeeCCc
Confidence            889999999988653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=3e-09  Score=90.31  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHH
Q 024331           33 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF  112 (269)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~  112 (269)
                      .+.+++.+....   ..++.+|+|+|||+|..++.++        ++         .++|+..|+..+          +.
T Consensus        27 ~~~~~~~~~~~~---~~~~~~iLDiGcGtG~~~~~l~--------~~---------~~~v~gvD~s~~----------mi   76 (251)
T d1wzna1          27 IDFVEEIFKEDA---KREVRRVLDLACGTGIPTLELA--------ER---------GYEVVGLDLHEE----------ML   76 (251)
T ss_dssp             HHHHHHHHHHTC---SSCCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHH----------HH
T ss_pred             HHHHHHHHHHhc---CCCCCEEEEeCCCCCccchhhc--------cc---------ceEEEEEeeccc----------cc
Confidence            344444444332   3345799999999999888766        32         267999998875          32


Q ss_pred             HHHHHHhc-CCCCCCCCceEEeecCCCccCCCCCCCceeeEecc-ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHH
Q 024331          113 QKILRKQL-GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSS-YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYY  190 (269)
Q Consensus       113 ~~~~~~~~-~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss-~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~  190 (269)
                       +.++++. ..+.   +-.|..   +++.+..+| +++|+++|. .++||++.                           
T Consensus        77 -~~a~~~~~~~~~---~i~~~~---~d~~~l~~~-~~fD~I~~~~~~~~~~~~---------------------------  121 (251)
T d1wzna1          77 -RVARRKAKERNL---KIEFLQ---GDVLEIAFK-NEFDAVTMFFSTIMYFDE---------------------------  121 (251)
T ss_dssp             -HHHHHHHHHTTC---CCEEEE---SCGGGCCCC-SCEEEEEECSSGGGGSCH---------------------------
T ss_pred             -cccccccccccc---cchhee---hhhhhcccc-cccchHhhhhhhhhcCCh---------------------------
Confidence             1122211 0111   123444   888887777 589999986 57777521                           


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCeEEEEecc
Q 024331          191 EQFQRDFSLFLKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       191 ~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g  220 (269)
                          .|+..+|+.-++-|+|||++++.+..
T Consensus       122 ----~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         122 ----EDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             ----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----HHHHHHHHHHHHHcCCCcEEEEEecc
Confidence                46677888888999999999997654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=9.6e-10  Score=92.54  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=70.4

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .+++.+|+|+|||+|..+..+.        +.         ..+|+..|+...          +. +.++.+ +      
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~giD~s~~----------~l-~~a~~~-~------   84 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQ--------ER---------GFEVVLVDPSKE----------ML-EVAREK-G------   84 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCHH----------HH-HHHHHH-T------
T ss_pred             cCCCCEEEEECCCCchhccccc--------cc---------ceEEEEeecccc----------cc-cccccc-c------
Confidence            3456799999999999988665        32         368999998765          32 222322 2      


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEecc-ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSS-YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss-~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      ...++.   +++.+..||++++|+++|. ..+||+.+                  +.        ++.+.+       .+
T Consensus        85 ~~~~~~---~~~~~l~~~~~~fD~ii~~~~~~~~~~d------------------~~--------~~l~~i-------~r  128 (246)
T d2avna1          85 VKNVVE---AKAEDLPFPSGAFEAVLALGDVLSYVEN------------------KD--------KAFSEI-------RR  128 (246)
T ss_dssp             CSCEEE---CCTTSCCSCTTCEEEEEECSSHHHHCSC------------------HH--------HHHHHH-------HH
T ss_pred             cccccc---ccccccccccccccceeeecchhhhhhh------------------HH--------HHHHHH-------Hh
Confidence            134555   7888889999999999985 57898633                  11        122333       35


Q ss_pred             hhccCCeEEEEeccc
Q 024331          207 ELVAEGRMVLTFLGR  221 (269)
Q Consensus       207 EL~pGG~lv~~~~g~  221 (269)
                      -|+|||++++++..+
T Consensus       129 ~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         129 VLVPDGLLIATVDNF  143 (246)
T ss_dssp             HEEEEEEEEEEEEBH
T ss_pred             hcCcCcEEEEEECCH
Confidence            566999999998643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.95  E-value=1e-09  Score=95.48  Aligned_cols=107  Identities=17%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|+.|..++        .++       . -+|...|....          + .+.++++... .   +.
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll--------~~~-------~-~~v~~vD~s~~----------~-l~~a~~~~~~-~---~~  141 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLL--------TKL-------Y-ATTDLLEPVKH----------M-LEEAKRELAG-M---PV  141 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTH--------HHH-------C-SEEEEEESCHH----------H-HHHHHHHTTT-S---SE
T ss_pred             CCCeEEEecccCChhhHHHH--------hhc-------C-ceEEEEcCCHH----------H-HHhhhccccc-c---cc
Confidence            56799999999999988776        442       1 25778886543          2 2333333221 1   12


Q ss_pred             -eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 -CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 -~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                       -|..   +++....++++++|+|||..++||+++                               .|+..||+.=++-|
T Consensus       142 ~~~~~---~d~~~~~~~~~~fD~I~~~~vl~hl~d-------------------------------~d~~~~l~~~~~~L  187 (254)
T d1xtpa_         142 GKFIL---ASMETATLPPNTYDLIVIQWTAIYLTD-------------------------------ADFVKFFKHCQQAL  187 (254)
T ss_dssp             EEEEE---SCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             ceeEE---ccccccccCCCccceEEeeccccccch-------------------------------hhhHHHHHHHHHhc
Confidence             2333   788888899999999999999999633                               23445555446778


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||.+++.....
T Consensus       188 kpgG~iii~e~~~  200 (254)
T d1xtpa_         188 TPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEEEEEEEBC
T ss_pred             CCCcEEEEEecCC
Confidence            8999999976543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.2e-09  Score=93.63  Aligned_cols=108  Identities=14%  Similarity=0.029  Sum_probs=73.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~  126 (269)
                      ...+|+|+|||+|..+..+.        +++        ...|+..|+...          +. +..++   ..|..-  
T Consensus        33 pg~~VLDiGCG~G~~~~~la--------~~~--------~~~v~GvD~s~~----------~~-~~ar~~~~~~gl~~--   83 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWA--------RDH--------GITGTGIDMSSL----------FT-AQAKRRAEELGVSE--   83 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HHT--------CCEEEEEESCHH----------HH-HHHHHHHHHTTCTT--
T ss_pred             CCCEEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEEecccc----------hh-hHHHHHHHHhhccc--
Confidence            35799999999998877655        442        278999998665          22 11111   122210  


Q ss_pred             CCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                       +--|+.   +++... +|++++|+++|..++||+...                                 ..+|+.-.+
T Consensus        84 -~v~~~~---~d~~~~-~~~~~fD~v~~~~~~~~~~d~---------------------------------~~~l~~~~r  125 (245)
T d1nkva_          84 -RVHFIH---NDAAGY-VANEKCDVAACVGATWIAGGF---------------------------------AGAEELLAQ  125 (245)
T ss_dssp             -TEEEEE---SCCTTC-CCSSCEEEEEEESCGGGTSSS---------------------------------HHHHHHHTT
T ss_pred             -cchhhh---hHHhhc-cccCceeEEEEEehhhccCCH---------------------------------HHHHHHHHH
Confidence             113544   788775 789999999999999996431                                 223444478


Q ss_pred             hhccCCeEEEEecccCCC
Q 024331          207 ELVAEGRMVLTFLGRKSQ  224 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~~~  224 (269)
                      .|||||++++...++...
T Consensus       126 ~LkPGG~l~i~~~~~~~~  143 (245)
T d1nkva_         126 SLKPGGIMLIGEPYWRQL  143 (245)
T ss_dssp             SEEEEEEEEEEEEEETTC
T ss_pred             HcCcCcEEEEEeccccCC
Confidence            999999999998876543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=1.5e-09  Score=91.83  Aligned_cols=113  Identities=20%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      +...+|+|+|||+|..|+.++        +..     ..|.++|+..|+...          ++. ..+++. ..+.   
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~--------~~~-----~~~~~~v~giD~S~~----------ml~-~A~~~~~~~~~---   90 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNSQP----------MVE-RCRQHIAAYHS---   90 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHH--------HTC-----CCSSCEEEEECSCHH----------HHH-HHHHHHHTSCC---
T ss_pred             CCCCEEEEeccchhhHHHHHH--------Hhh-----cCCCCceEEeCCCHH----------HHH-HHHHHhHhhcc---
Confidence            345799999999999988777        432     347899999999876          432 232221 1111   


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       ...+...-+++..  +|....|++++++++||++.                               +|..++|+.=.+-
T Consensus        91 -~~~~~~~~~d~~~--~~~~~~d~i~~~~~l~~~~~-------------------------------~d~~~~l~~i~~~  136 (225)
T d1im8a_          91 -EIPVEILCNDIRH--VEIKNASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEG  136 (225)
T ss_dssp             -SSCEEEECSCTTT--CCCCSEEEEEEESCGGGSCG-------------------------------GGHHHHHHHHHHH
T ss_pred             -cchhhhccchhhc--cccccceeeEEeeeccccCh-------------------------------hhHHHHHHHHHHh
Confidence             1222223355543  56677899999999999742                               1233344444677


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||.+++......
T Consensus       137 LkpgG~li~~~~~~~  151 (225)
T d1im8a_         137 LNPNGVLVLSEKFRF  151 (225)
T ss_dssp             EEEEEEEEEEEECCC
T ss_pred             CCCCceeeccccccc
Confidence            889999999876654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.4e-09  Score=93.21  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=82.2

Q ss_pred             hHHHhcHHHHHHHHHHHHHHHHHHHhhcccC--CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 024331           17 SYASNSLVQEKVISIAKPITEEAMTKLFCST--SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL   94 (269)
Q Consensus        17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~--~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~   94 (269)
                      .|.+||...+..    .+++++.+..+....  ....++|+|+|||+|..+..++.    .+.+++     ....+.++.
T Consensus         9 ~~~~~s~~~~~~----~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~----~l~~~~-----~~~~~~~~~   75 (280)
T d1jqea_           9 RFLNHSTEHQCM----QEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS----KVQAQY-----PGVCINNEV   75 (280)
T ss_dssp             HHHHTBSHHHHH----HHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHH----HHHHHS-----TTCEEEEEE
T ss_pred             HHHHhCcHHHHH----HHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHH----Hhhhhc-----cCCceEEEE
Confidence            355555544332    334444444443322  23568999999999987776663    333332     224577888


Q ss_pred             cCCCCCchHHHHHhhHHHHHHHHHhc-C-CCCCCCCceEEeecCCCc------cCCCCCCCceeeEeccccccccccCCC
Q 024331           95 NDLPGNDFNTIFRSLASFQKILRKQL-G-SASGAAGQCFFTGVPGSF------YGRLFPRNSVHLFHSSYSLQWLSQVPD  166 (269)
Q Consensus        95 nDLP~NDFntLF~~l~~~~~~~~~~~-~-~~~~~~~~~f~~~vpgSF------y~~lfP~~Svd~~~Ss~alHWLS~~P~  166 (269)
                      .|...+          ++ +.++++. . ...   ..+-+......+      ....++++++|+++++.+|||+.+.  
T Consensus        76 vD~s~~----------~l-~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--  139 (280)
T d1jqea_          76 VEPSAE----------QI-AKYKELVAKISNL---ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--  139 (280)
T ss_dssp             ECCCHH----------HH-HHHHHHHTTCCSC---TTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--
T ss_pred             EeCcHH----------HH-HHHHHHHhhcccc---ccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCH--
Confidence            885544          22 2232221 1 111   122222122222      2467899999999999999996431  


Q ss_pred             CCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEeccc
Q 024331          167 GLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       167 ~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                                                     ..+|+.=.+-|+|||.|+++....
T Consensus       140 -------------------------------~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         140 -------------------------------PATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             -------------------------------HHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             -------------------------------HHHHHHHHhhCCCCCEEEEEEecC
Confidence                                           122333356777999999987644

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3e-09  Score=90.67  Aligned_cols=139  Identities=14%  Similarity=0.030  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhh--
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSL--  109 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l--  109 (269)
                      ..+.+...+.++......+..+|+|+|||+|..++.++        ..        .--+|+..|+..+--..+=+.+  
T Consensus        33 ~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~--------~~--------~~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          33 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA--------CD--------SFQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG--------GG--------TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHh--------cc--------ccCcEEEecCCHHHHHHHHHHHhh
Confidence            34444455555444344567899999999999887554        21        1236777777655111000000  


Q ss_pred             ------------------------HHHHHHHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCC
Q 024331          110 ------------------------ASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVP  165 (269)
Q Consensus       110 ------------------------~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P  165 (269)
                                              +.....+....       .......+..+....++|.+++|+++|.++|||++.  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~--  167 (257)
T d2a14a1          97 EPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV-------KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC--  167 (257)
T ss_dssp             CTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE-------EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--
T ss_pred             ccccchhhhHHHHHHHhccccchHHHHHHHHhhhh-------hcccccccccccccccccCCcccEEeehhhHHHhcc--
Confidence                                    00000000000       012222344566677899999999999999999643  


Q ss_pred             CCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccC
Q 024331          166 DGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK  222 (269)
Q Consensus       166 ~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~  222 (269)
                                                 ...|+..+|+.-++-|||||+|+++.+...
T Consensus       168 ---------------------------~~~~~~~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         168 ---------------------------SLDAYRAALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             ---------------------------SHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             ---------------------------cHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence                                       125677888888999999999999887553

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.84  E-value=3.3e-09  Score=85.76  Aligned_cols=125  Identities=10%  Similarity=0.081  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH
Q 024331           34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ  113 (269)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~  113 (269)
                      |-|++.+.++   ..++..+|+|+|||+|.+++.++        ++         -++|+..|+..+          +..
T Consensus         7 ~~~~~~~~~l---~~~~~~rvLd~GCG~G~~a~~la--------~~---------G~~V~gvD~S~~----------~i~   56 (201)
T d1pjza_           7 KDLQQYWSSL---NVVPGARVLVPLCGKSQDMSWLS--------GQ---------GYHVVGAELSEA----------AVE   56 (201)
T ss_dssp             HHHHHHHHHH---CCCTTCEEEETTTCCSHHHHHHH--------HH---------CCEEEEEEECHH----------HHH
T ss_pred             HHHHHHHHHc---CCCCCCEEEEecCcCCHHHHHHH--------Hc---------CCceEeecccHH----------HHH
Confidence            4455555554   23456899999999999999888        55         289999999887          332


Q ss_pred             HHHHHhcCCC-C----------CCCCceEEeecCCCccCCC-CCCCceeeEeccccccccccCCCCCCCCCcceEEcCCC
Q 024331          114 KILRKQLGSA-S----------GAAGQCFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTS  181 (269)
Q Consensus       114 ~~~~~~~~~~-~----------~~~~~~f~~~vpgSFy~~l-fP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s  181 (269)
                       ..+++.... .          ......|..   +++.... .+..++|+++|+.++|+++.                  
T Consensus        57 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~~~~D~i~~~~~l~~l~~------------------  114 (201)
T d1pjza_          57 -RYFTERGEQPHITSQGDFKVYAAPGIEIWC---GDFFALTARDIGHCAAFYDRAAMIALPA------------------  114 (201)
T ss_dssp             -HHHHHHCSCSEEEEETTEEEEECSSSEEEE---ECCSSSTHHHHHSEEEEEEESCGGGSCH------------------
T ss_pred             -HHHHHhccccchhhhhhhhhccccccceec---ccccccccccccceeEEEEEeeeEecch------------------
Confidence             233322110 0          000112333   5555533 45678999999999999633                  


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331          182 PPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       182 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~  223 (269)
                                   .++..+++.=++-|||||++++.......
T Consensus       115 -------------~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_         115 -------------DMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             -------------HHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             -------------hhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence                         12333333335667799999988877654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.6e-09  Score=91.46  Aligned_cols=109  Identities=15%  Similarity=0.122  Sum_probs=72.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcC-CCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~  128 (269)
                      +..+|+|+|||+|..+..++        ++.       + -+|+..|+..+          ++. .++++.. .+.   .
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~--------~~~-------~-~~v~~vD~s~~----------~l~-~ak~~~~~~~~---~  109 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLL--------LPL-------F-REVDMVDITED----------FLV-QAKTYLGEEGK---R  109 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTT--------TTT-------C-SEEEEEESCHH----------HHH-HHHHHTGGGGG---G
T ss_pred             CCCEEEEeccCCCHhhHHHH--------Hhc-------C-CEEEEeecCHH----------Hhh-ccccccccccc---c
Confidence            45799999999999887665        321       2 37888998776          322 1222211 111   1


Q ss_pred             c-eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          129 Q-CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      + -|..   +++....++++++|++++..++|+++.                               .|+..+|+.=++-
T Consensus       110 ~~~f~~---~d~~~~~~~~~~fD~I~~~~~l~h~~~-------------------------------~~~~~~l~~i~~~  155 (222)
T d2ex4a1         110 VRNYFC---CGLQDFTPEPDSYDVIWIQWVIGHLTD-------------------------------QHLAEFLRRCKGS  155 (222)
T ss_dssp             EEEEEE---CCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHH
T ss_pred             cccccc---ccccccccccccccccccccccccchh-------------------------------hhhhhHHHHHHHh
Confidence            1 3444   899999999999999999999999643                               1223333333566


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||.++++.....
T Consensus       156 Lk~~G~~~i~~~~~~  170 (222)
T d2ex4a1         156 LRPNGIIVIKDNMAQ  170 (222)
T ss_dssp             EEEEEEEEEEEEEBS
T ss_pred             cCCcceEEEEEcccc
Confidence            679999999865444

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.83  E-value=1.4e-08  Score=87.64  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+.-+|+|+|||+|..++.++        +++       |+++++..|+|.-        +........+ .+.      
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la--------~~~-------p~~~~~~~D~~~~--------~~~a~~~~~~-~~~------  128 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIA--------RRA-------PHVSATVLEMAGT--------VDTARSYLKD-EGL------  128 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECTTH--------HHHHHHHHHH-TTC------
T ss_pred             ccCCEEEEeCCCCCHHHHHHH--------Hhc-------ceeEEEEccCHHH--------HHHHHHHHHH-hhc------
Confidence            445799999999999988887        664       7899999999753        2222222222 121      


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .-.+..++|+|+. ..| .+.|+++++..||.++.                               .+..++|+.=++-|
T Consensus       129 ~~rv~~~~~D~~~-~~~-~~~D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L  175 (253)
T d1tw3a2         129 SDRVDVVEGDFFE-PLP-RKADAIILSFVLLNWPD-------------------------------HDAVRILTRCAEAL  175 (253)
T ss_dssp             TTTEEEEECCTTS-CCS-SCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTE
T ss_pred             ccchhhccccchh-hcc-cchhheeeccccccCCc-------------------------------hhhHHHHHHHHHhc
Confidence            1123335589886 344 46899999999996322                               12233444446788


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||++++......
T Consensus       176 kPGG~l~i~e~~~~  189 (253)
T d1tw3a2         176 EPGGRILIHERDDL  189 (253)
T ss_dssp             EEEEEEEEEECCBC
T ss_pred             CCCcEEEEEeccCC
Confidence            99999999866443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.81  E-value=1.7e-08  Score=86.64  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=73.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +.-+|+|+|||+|..+..++        +.        ..-+|+..|+...          ++.. ++.+. ..+.  ..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~--------~~--------~~~~v~GiD~S~~----------~l~~-A~~r~~~~~~--~~   74 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYE--------RA--------GIGEYYGVDIAEV----------SIND-ARVRARNMKR--RF   74 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHH--------HH--------TCSEEEEEESCHH----------HHHH-HHHHHHTSCC--SS
T ss_pred             CcCEEEEecccCcHHHHHHH--------Hc--------CCCeEEEecCCHH----------HHHH-HHHHHHhcCC--Cc
Confidence            45799999999999877665        43        1247999998876          3322 22211 1111  01


Q ss_pred             c-eEEeecCCCccCCCC-CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 Q-CFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~lf-P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      + .|..   ++.....+ +++++|+++|..++||+-.                             -.+++..+|+.=.+
T Consensus        75 ~v~f~~---~D~~~~~~~~~~~fD~V~~~~~l~~~~~-----------------------------~~~~~~~~l~~i~~  122 (252)
T d1ri5a_          75 KVFFRA---QDSYGRHMDLGKEFDVISSQFSFHYAFS-----------------------------TSESLDIAQRNIAR  122 (252)
T ss_dssp             EEEEEE---SCTTTSCCCCSSCEEEEEEESCGGGGGS-----------------------------SHHHHHHHHHHHHH
T ss_pred             ceEEEE---cchhhhcccccccceEEEEcceeeecCC-----------------------------CHHHHHHHHHHHhc
Confidence            2 2333   66666665 6779999999999999532                             12567778877788


Q ss_pred             hhccCCeEEEEec
Q 024331          207 ELVAEGRMVLTFL  219 (269)
Q Consensus       207 EL~pGG~lv~~~~  219 (269)
                      -|+|||+++++++
T Consensus       123 ~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         123 HLRPGGYFIMTVP  135 (252)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             eeCCCCEEEEEec
Confidence            8999999999865

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=5.9e-09  Score=86.41  Aligned_cols=53  Identities=13%  Similarity=0.118  Sum_probs=41.0

Q ss_pred             CCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEE
Q 024331          137 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL  216 (269)
Q Consensus       137 gSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~  216 (269)
                      +++....+|++++|+++|+.+|||+++                                 +..+|+.=.+-|+|||+|++
T Consensus        80 ~d~~~l~~~~~~fD~I~~~~~l~h~~d---------------------------------~~~~l~~~~~~L~pgG~l~i  126 (208)
T d1vlma_          80 GTAENLPLKDESFDFALMVTTICFVDD---------------------------------PERALKEAYRILKKGGYLIV  126 (208)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGSSC---------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccc---------------------------------cccchhhhhhcCCCCceEEE
Confidence            888889999999999999999999733                                 11233333566779999999


Q ss_pred             EecccC
Q 024331          217 TFLGRK  222 (269)
Q Consensus       217 ~~~g~~  222 (269)
                      ..+...
T Consensus       127 ~~~~~~  132 (208)
T d1vlma_         127 GIVDRE  132 (208)
T ss_dssp             EEECSS
T ss_pred             EecCCc
Confidence            987553

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.79  E-value=5.7e-09  Score=86.49  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHH--HHHHHhcCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ--KILRKQLGSASGAA  127 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~--~~~~~~~~~~~~~~  127 (269)
                      ++-+|+|+|||+|.+++.++        ++         -.+|+..|+..+          ++.  ....++.+  .   
T Consensus        30 ~~grvLDiGcG~G~~~~~la--------~~---------g~~v~gvD~s~~----------~l~~a~~~~~~~~--~---   77 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLA--------AN---------GYDVTAWDKNPA----------SMANLERIKAAEG--L---   77 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HHHHHHHHHHHTT--C---
T ss_pred             CCCcEEEECCCCCHHHHHHH--------HH---------hhhhccccCcHH----------HHHHHHHHhhhcc--c---
Confidence            34699999999999999777        43         268899998776          221  11111222  1   


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .++  ...-+++.... |++++|++++..++|++..                               .++.++|+.=++-
T Consensus        78 ~~~--~~~~~d~~~~~-~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~  123 (198)
T d2i6ga1          78 DNL--QTDLVDLNTLT-FDGEYDFILSTVVMMFLEA-------------------------------QTIPGLIANMQRC  123 (198)
T ss_dssp             TTE--EEEECCTTTCC-CCCCEEEEEEESCGGGSCT-------------------------------THHHHHHHHHHHT
T ss_pred             cch--hhhheeccccc-ccccccEEEEeeeeecCCH-------------------------------HHHHHHHHHHHHH
Confidence            122  22335666554 5789999999999999532                               1344566666778


Q ss_pred             hccCCeEEEEecccC
Q 024331          208 LVAEGRMVLTFLGRK  222 (269)
Q Consensus       208 L~pGG~lv~~~~g~~  222 (269)
                      |+|||++++..+...
T Consensus       124 L~pgG~~~~~~~~~~  138 (198)
T d2i6ga1         124 TKPGGYNLIVAAMDT  138 (198)
T ss_dssp             EEEEEEEEEEEEBC-
T ss_pred             cCCCcEEEEEEecCC
Confidence            999999999877654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.75  E-value=1.1e-08  Score=87.11  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             CCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCC
Q 024331           47 TSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASG  125 (269)
Q Consensus        47 ~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~  125 (269)
                      ..+++.+|+|+|||+|..|+.++        ++         -.+|+..|+..+          ++. .++++. ..+. 
T Consensus        34 ~~~~~~~vLDiGCG~G~~~~~l~--------~~---------g~~v~GvD~S~~----------ml~-~A~~~~~~~~~-   84 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGNLTENLC--------PK---------FKNTWAVDLSQE----------MLS-EAENKFRSQGL-   84 (246)
T ss_dssp             TTCCTTEEEEETCTTSTTHHHHG--------GG---------SSEEEEECSCHH----------HHH-HHHHHHHHTTC-
T ss_pred             hCCCCCeEEEEeCcCCHHHHHHH--------Hh---------CCccEeeccchh----------hhh-hccccccccCc-
Confidence            34456799999999999988776        43         268999998876          332 122211 1111 


Q ss_pred             CCCceEEeecCCCccCCCCCCCceeeEecc-ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024331          126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSS-YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR  204 (269)
Q Consensus       126 ~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss-~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R  204 (269)
                        .--|+.   +++....+ ++++|+++|. .+++++..                              .+|+.++|+.=
T Consensus        85 --~v~~~~---~d~~~~~~-~~~fD~i~~~~~~~~~~~~------------------------------~~~~~~~l~~~  128 (246)
T d1y8ca_          85 --KPRLAC---QDISNLNI-NRKFDLITCCLDSTNYIID------------------------------SDDLKKYFKAV  128 (246)
T ss_dssp             --CCEEEC---CCGGGCCC-SCCEEEEEECTTGGGGCCS------------------------------HHHHHHHHHHH
T ss_pred             --cceeec---cchhhhcc-cccccccceeeeeeeccCC------------------------------HHHHHHHHHHH
Confidence              113444   77777554 5689999985 56776422                              25777888888


Q ss_pred             hhhhccCCeEEEEec
Q 024331          205 SEELVAEGRMVLTFL  219 (269)
Q Consensus       205 a~EL~pGG~lv~~~~  219 (269)
                      ++-|+|||.+++.+.
T Consensus       129 ~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         129 SNHLKEGGVFIFDIN  143 (246)
T ss_dssp             HTTEEEEEEEEEEEE
T ss_pred             HHhCCCCeEEEEEeC
Confidence            999999999998764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.71  E-value=1.6e-08  Score=88.74  Aligned_cols=108  Identities=14%  Similarity=0.087  Sum_probs=70.0

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAA  127 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~  127 (269)
                      .++.+|+|+|||+|..+..++        +.+      ++..+|+..|+..+          ++ +..+++. ..+.   
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la--------~~~------~~~~~v~giD~s~~----------~l-~~a~~~~~~~~~---   77 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLM--------PLL------PEGSKYTGIDSGET----------LL-AEARELFRLLPY---   77 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHT--------TTS------CTTCEEEEEECCHH----------HH-HHHHHHHHSSSS---
T ss_pred             CCcCEEEEecCcCCHHHHHHH--------HhC------CCCCEEEEEecchh----------Hh-hhhhcccccccc---
Confidence            468999999999998887666        332      23478899998655          21 2222221 1111   


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                      .-.|..   +++....++ +++|+++|+.++||+++                  +..+               |+.=.+-
T Consensus        78 ~~~f~~---~d~~~~~~~-~~fD~v~~~~~l~~~~d------------------~~~~---------------l~~~~~~  120 (281)
T d2gh1a1          78 DSEFLE---GDATEIELN-DKYDIAICHAFLLHMTT------------------PETM---------------LQKMIHS  120 (281)
T ss_dssp             EEEEEE---SCTTTCCCS-SCEEEEEEESCGGGCSS------------------HHHH---------------HHHHHHT
T ss_pred             cccccc---ccccccccc-CCceEEEEehhhhcCCC------------------HHHH---------------HHHHHHH
Confidence            123444   788877765 57999999999999743                  1112               2222566


Q ss_pred             hccCCeEEEEeccc
Q 024331          208 LVAEGRMVLTFLGR  221 (269)
Q Consensus       208 L~pGG~lv~~~~g~  221 (269)
                      |||||.+++..+-+
T Consensus       121 LkpgG~lii~~~~~  134 (281)
T d2gh1a1         121 VKKGGKIICFEPHW  134 (281)
T ss_dssp             EEEEEEEEEEECCH
T ss_pred             cCcCcEEEEEECCc
Confidence            88999999987543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.68  E-value=9.2e-08  Score=82.18  Aligned_cols=143  Identities=13%  Similarity=0.044  Sum_probs=84.2

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..+..+.        +..       |.-+||..|+..-          +.. .++.......   .-
T Consensus        74 pG~~VLDlGcGsG~~~~~la--------~~~-------~~g~V~aVDiS~~----------~i~-~a~~~a~~~~---ni  124 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVA--------DIA-------DKGIVYAIEYAPR----------IMR-ELLDACAERE---NI  124 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHH--------HHT-------TTSEEEEEESCHH----------HHH-HHHHHTTTCT---TE
T ss_pred             CCCEEEEeCEEcCHHHHHHH--------HhC-------CCCEEEEEeCcHH----------HHH-HHHHHHhhhc---cc
Confidence            46899999999999988777        542       5579999987653          222 2322221100   12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      ..+.+-..  .-..+++.+.++.+++..+||..+                          .+.+.+.+.+|       ||
T Consensus       125 ~~i~~d~~--~~~~~~~~~~~v~~i~~~~~~~~~--------------------------~~~~l~~~~r~-------LK  169 (230)
T d1g8sa_         125 IPILGDAN--KPQEYANIVEKVDVIYEDVAQPNQ--------------------------AEILIKNAKWF-------LK  169 (230)
T ss_dssp             EEEECCTT--CGGGGTTTCCCEEEEEECCCSTTH--------------------------HHHHHHHHHHH-------EE
T ss_pred             ceEEEeec--cCcccccccceeEEeeccccchHH--------------------------HHHHHHHHHHh-------cc
Confidence            34443222  333345566777777666666211                          11233444444       55


Q ss_pred             cCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecccc
Q 024331          210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNY  264 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~  264 (269)
                      |||.++++...+..+....  .   -..+++..+.|.+.|+   +.++..+|.-|
T Consensus       170 pgG~~~i~~k~~~~d~~~~--~---~~~~~e~~~~L~~aGF---~ive~idL~py  216 (230)
T d1g8sa_         170 KGGYGMIAIKARSIDVTKD--P---KEIFKEQKEILEAGGF---KIVDEVDIEPF  216 (230)
T ss_dssp             EEEEEEEEEEGGGTCSSSC--H---HHHHHHHHHHHHHHTE---EEEEEEECTTT
T ss_pred             cCceEEEEeeccccCCCCC--H---HHHHHHHHHHHHHcCC---EEEEEecCCCC
Confidence            9999999987775432111  1   1345677888889999   55666666544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.65  E-value=4.4e-08  Score=85.03  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ...-+|+|+|||+|..+..++        +++       |.++++..|+|..        ++...+.+.. .+.      
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------P~~~~~~~Dlp~~--------~~~a~~~~~~-~~~------  129 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIA--------LRA-------PHLRGTLVELAGP--------AERARRRFAD-AGL------  129 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HHHHHHHHHH-TTC------
T ss_pred             ccCCEEEEECCCCCHHHHHHH--------Hhh-------cCcEEEEecChHH--------HHHHHHHHhh-cCC------
Confidence            345689999999998888777        665       7899999999853        3222222222 221      


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .-.+.-++++|+. .+|. +.|+++..+.||-+++                               ++...+|+.=++-|
T Consensus       130 ~~ri~~~~~d~~~-~~p~-~~D~v~~~~vLh~~~d-------------------------------~~~~~lL~~i~~~L  176 (256)
T d1qzza2         130 ADRVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSD-------------------------------EDALTILRGCVRAL  176 (256)
T ss_dssp             TTTEEEEECCTTS-CCSC-CEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHE
T ss_pred             cceeeeeeeeccc-cccc-cchhhhccccccccCc-------------------------------HHHHHHHHHHHhhc
Confidence            1123335589986 4565 4899999999983211                               23344455446788


Q ss_pred             ccCCeEEEEeccc
Q 024331          209 VAEGRMVLTFLGR  221 (269)
Q Consensus       209 ~pGG~lv~~~~g~  221 (269)
                      +|||++++.-.-.
T Consensus       177 kpgG~llI~d~~~  189 (256)
T d1qzza2         177 EPGGRLLVLDRAD  189 (256)
T ss_dssp             EEEEEEEEEECCH
T ss_pred             CCcceeEEEEecc
Confidence            8999999886543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=7.4e-08  Score=81.39  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=53.9

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHH--HhcCCCCCCCCce
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR--KQLGSASGAAGQC  130 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~--~~~~~~~~~~~~~  130 (269)
                      .|+|+|||+|..++.++        ++.       |+..++..|+..+          ++....+  ++.+.     .++
T Consensus        32 lvLeIGcG~G~~~~~lA--------~~~-------p~~~~iGiD~~~~----------~i~~a~~~~~~~~l-----~Nv   81 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMA--------KQN-------PDINYIGIELFKS----------VIVTAVQKVKDSEA-----QNV   81 (204)
T ss_dssp             EEEEECCTTSHHHHHHH--------HHC-------TTSEEEEECSCHH----------HHHHHHHHHHHSCC-----SSE
T ss_pred             eEEEEEecCcHHHHHHH--------HhC-------CCCcEEEeecchH----------HHHHHHHHHHHHhc-----cCc
Confidence            69999999999999887        653       8899999998765          2222111  11222     244


Q ss_pred             EEeecCCCccCC--CCCCCceeeEecccccccc
Q 024331          131 FFTGVPGSFYGR--LFPRNSVHLFHSSYSLQWL  161 (269)
Q Consensus       131 f~~~vpgSFy~~--lfP~~Svd~~~Ss~alHWL  161 (269)
                      .+.  .+++...  .||++|+|.++..+..+|-
T Consensus        82 ~~~--~~Da~~l~~~~~~~~~d~v~i~fp~P~~  112 (204)
T d2fcaa1          82 KLL--NIDADTLTDVFEPGEVKRVYLNFSDPWP  112 (204)
T ss_dssp             EEE--CCCGGGHHHHCCTTSCCEEEEESCCCCC
T ss_pred             hhc--ccchhhhhcccCchhhhccccccccccc
Confidence            333  3565543  4999999999999999993

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.52  E-value=1.1e-07  Score=80.21  Aligned_cols=100  Identities=13%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      +-+|+|+|||+|..+..+.        ++         -.+|+..|+..+          + .+.++++...+     --
T Consensus        21 ~~~VLDiGcG~G~~~~~l~--------~~---------g~~v~giD~s~~----------~-i~~a~~~~~~~-----~~   67 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQ--------EH---------FNDITCVEASEE----------A-ISHAQGRLKDG-----IT   67 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHT--------TT---------CSCEEEEESCHH----------H-HHHHHHHSCSC-----EE
T ss_pred             CCcEEEEeCCCcHHHHHHH--------Hc---------CCeEEEEeCcHH----------H-hhhhhcccccc-----cc
Confidence            4589999999999887655        32         146888887543          2 22233332221     13


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHH-hhhhhhhc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL-KCRSEELV  209 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL-~~Ra~EL~  209 (269)
                      |+.   +++....+ ++++|++++...|||+++                  +               ..+| +.+.+-|+
T Consensus        68 ~~~---~~~~~~~~-~~~fD~I~~~~vleh~~d------------------~---------------~~~l~~i~~~~Lk  110 (225)
T d2p7ia1          68 YIH---SRFEDAQL-PRRYDNIVLTHVLEHIDD------------------P---------------VALLKRINDDWLA  110 (225)
T ss_dssp             EEE---SCGGGCCC-SSCEEEEEEESCGGGCSS------------------H---------------HHHHHHHHHTTEE
T ss_pred             ccc---cccccccc-ccccccccccceeEecCC------------------H---------------HHHHHHHHHHhcC
Confidence            444   67776554 689999999999999643                  1               1112 23357789


Q ss_pred             cCCeEEEEecc
Q 024331          210 AEGRMVLTFLG  220 (269)
Q Consensus       210 pGG~lv~~~~g  220 (269)
                      |||.++++++-
T Consensus       111 ~gG~l~i~~pn  121 (225)
T d2p7ia1         111 EGGRLFLVCPN  121 (225)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCceEEEEeCC
Confidence            99999999853

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4e-07  Score=78.82  Aligned_cols=58  Identities=16%  Similarity=0.079  Sum_probs=45.1

Q ss_pred             CCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEE
Q 024331          136 PGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMV  215 (269)
Q Consensus       136 pgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv  215 (269)
                      ++.+....++++++|++.++++|||++.-+                             .++.++|+.=++-|||||.|+
T Consensus       145 ~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~-----------------------------~~~~~~l~~~~~~LkPGG~li  195 (263)
T d2g72a1         145 PQPLGAGSPAPLPADALVSAFCLEAVSPDL-----------------------------ASFQRALDHITTLLRPGGHLL  195 (263)
T ss_dssp             SSTTCSSCSSCSSEEEEEEESCHHHHCSSH-----------------------------HHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCccccCCcCcCccCeeeeHHHHHHHccCH-----------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence            455666677889999999999999975411                             356677777788999999999


Q ss_pred             EEecccC
Q 024331          216 LTFLGRK  222 (269)
Q Consensus       216 ~~~~g~~  222 (269)
                      +......
T Consensus       196 ~~~~~~~  202 (263)
T d2g72a1         196 LIGALEE  202 (263)
T ss_dssp             EEEEESC
T ss_pred             EecccCC
Confidence            9877554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.46  E-value=8.3e-07  Score=74.87  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..+..+.        +..       |+-+|+..|+...
T Consensus        56 pg~~VLDlGcG~G~~~~~la--------~~v-------~~g~V~gvDis~~   91 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLA--------DIV-------DEGIIYAVEYSAK   91 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHH--------HHT-------TTSEEEEECCCHH
T ss_pred             CCCEEEEeCCcCCHHHHHHH--------Hhc-------cCCeEEEEeCCHH
Confidence            45899999999999887776        543       4568999998775

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.1e-07  Score=77.54  Aligned_cols=129  Identities=7%  Similarity=-0.025  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHH
Q 024331           33 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASF  112 (269)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~  112 (269)
                      -|.|.+-+.++..  .+...+|+|+|||+|.+++.++        ++         -++|+..|+...          +.
T Consensus        30 ~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA--------~~---------G~~V~gvD~S~~----------ai   80 (229)
T d2bzga1          30 HQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFA--------DR---------GHSVVGVEISEL----------GI   80 (229)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHH--------HT---------TCEEEEECSCHH----------HH
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHH--------hC---------CCcEEEEeCCHH----------HH
Confidence            3444444444332  2345799999999999999888        53         378999998875          22


Q ss_pred             HHHHHHhcCCC--------CCCCCc------eEEeecCCCccCC-CCCCCceeeEeccccccccccCCCCCCCCCcceEE
Q 024331          113 QKILRKQLGSA--------SGAAGQ------CFFTGVPGSFYGR-LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFM  177 (269)
Q Consensus       113 ~~~~~~~~~~~--------~~~~~~------~f~~~vpgSFy~~-lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~  177 (269)
                       +..+++.+..        .. ...      ..+..+-++++.. ..+.+++|++++..++|.+..              
T Consensus        81 -~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~--------------  144 (229)
T d2bzga1          81 -QEFFTEQNLSYSEEPITEIP-GTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP--------------  144 (229)
T ss_dssp             -HHHHHHTTCCEEEEECTTST-TCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG--------------
T ss_pred             -HHHHHHhhccccccchhccc-ccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccc--------------
Confidence             1122221100        00 000      1112223666664 577889999999999998632              


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccCCeEEEEecccCC
Q 024331          178 ASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS  223 (269)
Q Consensus       178 ~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv~~~~g~~~  223 (269)
                            +..+.|.           +.=.+-|+|||++++..+....
T Consensus       145 ------~~r~~~~-----------~~~~~~LkpgG~~~l~~~~~~~  173 (229)
T d2bzga1         145 ------GDRKCYA-----------DTMFSLLGKKFQYLLCVLSYDP  173 (229)
T ss_dssp             ------GGHHHHH-----------HHHHHTEEEEEEEEEEEEECCT
T ss_pred             ------hhhHHHH-----------HHHHhhcCCcceEEEEEcccCC
Confidence                  1122332           2225678899999999887754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=3.1e-07  Score=82.05  Aligned_cols=104  Identities=19%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        ++    |    .-+|+..|....        +.......+ +.+...   .-.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa--------~~----G----a~~V~avd~s~~--------~~~a~~~~~-~~~~~~---~i~   90 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAA--------KH----G----AKHVIGVDMSSI--------IEMAKELVE-LNGFSD---KIT   90 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHH--------HT----C----CSEEEEEESSTH--------HHHHHHHHH-HTTCTT---TEE
T ss_pred             cCEEEEeCCCCCHHHHHHH--------Hh----C----CCEEEEEeCCHH--------HHHHHHHHH-HhCccc---cce
Confidence            4689999999998887666        33    1    248999997532        111111112 222210   123


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                      ++.   ++.....+|++++|+++|....+.+...                              .++..++.+|.+-|||
T Consensus        91 ~i~---~~~~~l~~~~~~~D~i~se~~~~~~~~e------------------------------~~~~~~~~a~~r~Lkp  137 (328)
T d1g6q1_          91 LLR---GKLEDVHLPFPKVDIIISEWMGYFLLYE------------------------------SMMDTVLYARDHYLVE  137 (328)
T ss_dssp             EEE---SCTTTSCCSSSCEEEEEECCCBTTBSTT------------------------------CCHHHHHHHHHHHEEE
T ss_pred             EEE---eehhhccCcccceeEEEEEecceeeccc------------------------------hhHHHHHHHHHhccCC
Confidence            444   7888999999999999997777664321                              2345667778889999


Q ss_pred             CCeEE
Q 024331          211 EGRMV  215 (269)
Q Consensus       211 GG~lv  215 (269)
                      ||+++
T Consensus       138 gG~ii  142 (328)
T d1g6q1_         138 GGLIF  142 (328)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            99985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=4.5e-07  Score=80.60  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        +.    |    .-+|+..|...+ .       .... +..+..+..    ..+
T Consensus        34 ~~~VLDiGcG~G~ls~~aa--------~~----G----a~~V~avd~s~~-~-------~~a~-~~~~~n~~~----~~v   84 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAA--------KA----G----ARKVIGIECSSI-S-------DYAV-KIVKANKLD----HVV   84 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHH--------HT----T----CSEEEEEECSTT-H-------HHHH-HHHHHTTCT----TTE
T ss_pred             cCEEEEEecCCcHHHHHHH--------Hh----C----CCEEEEEcCcHH-H-------hhhh-hHHHHhCCc----ccc
Confidence            4689999999998887666        32    1    247999997654 1       1111 111222221    122


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA  210 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p  210 (269)
                        .-+-|+.....+|.+++|+++|....|.+-.                              +.++..+|.+|.+-|+|
T Consensus        85 --~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~------------------------------e~~~~~~l~~~~r~Lkp  132 (316)
T d1oria_          85 --TIIKGKVEEVELPVEKVDIIISEWMGYCLFY------------------------------ESMLNTVLHARDKWLAP  132 (316)
T ss_dssp             --EEEESCTTTCCCSSSCEEEEEECCCBBTBTB------------------------------TCCHHHHHHHHHHHEEE
T ss_pred             --ceEeccHHHcccccceeEEEeeeeeeeeecc------------------------------HHHHHHHHHHHHhcCCC
Confidence              2233888999999999999999766666322                              12456778888999999


Q ss_pred             CCeEE
Q 024331          211 EGRMV  215 (269)
Q Consensus       211 GG~lv  215 (269)
                      ||+++
T Consensus       133 ~G~ii  137 (316)
T d1oria_         133 DGLIF  137 (316)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            99987

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.39  E-value=3.3e-07  Score=77.31  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCceEE
Q 024331           53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF  132 (269)
Q Consensus        53 ~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~  132 (269)
                      .|+|+|||+|..++.++        +.+       |+..++..|+..+   .+-+    ...+.. +.+.     .++.+
T Consensus        34 lvLdIGcG~G~~~~~lA--------~~~-------p~~~~iGid~~~~---~v~~----a~~~~~-~~~l-----~Ni~~   85 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMA--------KQN-------PDINYIGIDIQKS---VLSY----ALDKVL-EVGV-----PNIKL   85 (204)
T ss_dssp             EEEEESCTTSHHHHHHH--------HHC-------TTSEEEEEESCHH---HHHH----HHHHHH-HHCC-----SSEEE
T ss_pred             eEEEEeccCCHHHHHHH--------HHC-------CCCceEEEeccHH---HHHH----HHHhhh-hhcc-----cccee
Confidence            68999999999998887        553       8899999998765   1111    111111 1222     34444


Q ss_pred             eecCCCccCCCCCCCceeeEeccccccc
Q 024331          133 TGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       133 ~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      ....+.-....||++|+|.++..+.-.|
T Consensus        86 ~~~da~~l~~~~~~~~~~~i~i~fPdPw  113 (204)
T d1yzha1          86 LWVDGSDLTDYFEDGEIDRLYLNFSDPW  113 (204)
T ss_dssp             EECCSSCGGGTSCTTCCSEEEEESCCCC
T ss_pred             eecCHHHHhhhccCCceehhcccccccc
Confidence            4322222235699999999999888888

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=9.6e-07  Score=77.64  Aligned_cols=109  Identities=14%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||.|..++.++        +++        ..+|...|+..+-.        .......++.+..    ..
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a--------~~~--------g~~v~gi~ls~~q~--------~~a~~~~~~~~l~----~~  103 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAV--------ERF--------DVNVIGLTLSKNQH--------ARCEQVLASIDTN----RS  103 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHH--------HHHHHHHHTSCCS----SC
T ss_pred             CCCEEEEecCCchHHHHHHH--------HhC--------ceeEEEecchHHHH--------HHHHHHHHhhccc----cc
Confidence            46899999999998877766        554        26899999888711        1111111122221    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +.+.  -.++..   +++++|.++|..+++.+.+                               +++..||+.=++-||
T Consensus       104 ~~~~--~~d~~~---~~~~fD~i~si~~~eh~~~-------------------------------~~~~~~f~~i~~~Lk  147 (280)
T d2fk8a1         104 RQVL--LQGWED---FAEPVDRIVSIEAFEHFGH-------------------------------ENYDDFFKRCFNIMP  147 (280)
T ss_dssp             EEEE--ESCGGG---CCCCCSEEEEESCGGGTCG-------------------------------GGHHHHHHHHHHHSC
T ss_pred             hhhh--hhhhhh---hccchhhhhHhhHHHHhhh-------------------------------hhHHHHHHHHHhccC
Confidence            2222  134433   4679999999888776422                               345566666678888


Q ss_pred             cCCeEEEEecccC
Q 024331          210 AEGRMVLTFLGRK  222 (269)
Q Consensus       210 pGG~lv~~~~g~~  222 (269)
                      |||++++..+...
T Consensus       148 pgG~~~i~~i~~~  160 (280)
T d2fk8a1         148 ADGRMTVQSSVSY  160 (280)
T ss_dssp             TTCEEEEEEEECC
T ss_pred             CCceEEEEEeecc
Confidence            9999999876543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.35  E-value=4.7e-06  Score=71.18  Aligned_cols=142  Identities=14%  Similarity=0.076  Sum_probs=80.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..+.        +..   |   |+-.||..|+...          +... ++... ..+    .
T Consensus        73 pG~~VLDlGaGsG~~t~~la--------~~V---G---~~G~V~aVD~s~~----------~l~~-a~~~a~~~~----~  123 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVS--------DIV---G---WEGKIFGIEFSPR----------VLRE-LVPIVEERR----N  123 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHH--------HHH---C---TTSEEEEEESCHH----------HHHH-HHHHHSSCT----T
T ss_pred             CCCEEEEeccCCCHHHHHHH--------HHh---C---CCCEEEEEeCcHH----------HHHH-HHHHHHhcC----C
Confidence            45899999999999999887        543   1   5689999988764          2222 22221 111    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      ...+.+--+.-..-.++..++|+++...+.+.                                   +-..+++.=.+-|
T Consensus       124 ~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~-----------------------------------~~~~~l~~~~~~L  168 (227)
T d1g8aa_         124 IVPILGDATKPEEYRALVPKVDVIFEDVAQPT-----------------------------------QAKILIDNAEVYL  168 (227)
T ss_dssp             EEEEECCTTCGGGGTTTCCCEEEEEECCCSTT-----------------------------------HHHHHHHHHHHHE
T ss_pred             ceEEEEECCCcccccccccceEEEEEEccccc-----------------------------------hHHHHHHHHHHhc
Confidence            23444444444444455678999887322110                                   0112233334556


Q ss_pred             ccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccccceecccc
Q 024331          209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLIVFNQLNY  264 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d~FnlP~~  264 (269)
                      +|||++++++.++..+....  .    +.+......+..+|+   +.++..+|.-|
T Consensus       169 kpgG~lvi~~ka~~~~~~~~--~----~~v~~~v~~l~~~gf---~iie~i~L~p~  215 (227)
T d1g8aa_         169 KRGGYGMIAVKSRSIDVTKE--P----EQVFREVERELSEYF---EVIERLNLEPY  215 (227)
T ss_dssp             EEEEEEEEEEEGGGTCTTSC--H----HHHHHHHHHHHHTTS---EEEEEEECTTT
T ss_pred             ccCCeEEEEEECCccCCCCC--H----HHHHHHHHHHHHcCC---EEEEEEcCCCC
Confidence            69999999987765432211  1    122234566777887   44455555433

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=76.67  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             HHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHH
Q 024331           35 ITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQK  114 (269)
Q Consensus        35 ~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~  114 (269)
                      ...+||.+....  .+.-+|+|+|||+|..++.++        +.    |    .-+|+..|...+        +.....
T Consensus        22 ~y~~ai~~~~~~--~~~~~VLDiGcG~G~lsl~aa--------~~----G----a~~V~aid~s~~--------~~~a~~   75 (311)
T d2fyta1          22 SYRDFIYQNPHI--FKDKVVLDVGCGTGILSMFAA--------KA----G----AKKVLGVDQSEI--------LYQAMD   75 (311)
T ss_dssp             HHHHHHHHCGGG--TTTCEEEEETCTTSHHHHHHH--------HT----T----CSEEEEEESSTH--------HHHHHH
T ss_pred             HHHHHHHhcccc--CCcCEEEEECCCCCHHHHHHH--------Hc----C----CCEEEEEeCHHH--------HHHHHH
Confidence            344555443221  134689999999999887666        33    1    248999997653        111111


Q ss_pred             HHHHhcCCCCCCCCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHH
Q 024331          115 ILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQ  194 (269)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~  194 (269)
                      ... ..+..    ..+.+  +.++..+..+|..++|+++|....|-+..                              +
T Consensus        76 ~~~-~~~~~----~~i~~--~~~~~~~l~~~~~~~D~Ivse~~~~~~~~------------------------------e  118 (311)
T d2fyta1          76 IIR-LNKLE----DTITL--IKGKIEEVHLPVEKVDVIISEWMGYFLLF------------------------------E  118 (311)
T ss_dssp             HHH-HTTCT----TTEEE--EESCTTTSCCSCSCEEEEEECCCBTTBTT------------------------------T
T ss_pred             HHH-HhCCC----ccceE--EEeeHHHhcCccccceEEEEeeeeeeccc------------------------------c
Confidence            111 22221    12222  34888888899999999999555443211                              1


Q ss_pred             HHHHHHHhhhhhhhccCCeEEE
Q 024331          195 RDFSLFLKCRSEELVAEGRMVL  216 (269)
Q Consensus       195 ~D~~~FL~~Ra~EL~pGG~lv~  216 (269)
                      ..+..++.+|.+-|+|||+++-
T Consensus       119 ~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         119 SMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccHHHHHHHHhcCCCCcEEec
Confidence            2345677788889999999973

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1.4e-06  Score=73.41  Aligned_cols=82  Identities=11%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|..|..+.        +.+      .+...|+..|.... .      +..-...+. +.+.    .+-
T Consensus        75 ~g~~VLdiG~GtG~~s~~la--------~~~------~~~g~V~~id~~~~-~------~~~a~~~~~-~~~~----~n~  128 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMS--------RVV------GEKGLVVSVEYSRK-I------CEIAKRNVE-RLGI----ENV  128 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTCEEEEEESCHH-H------HHHHHHHHH-HTTC----CSE
T ss_pred             ccceEEEecCccchhHHHHH--------HHh------CCCCcEEEeecchh-h------HHHhhhhHh-hhcc----ccc
Confidence            46799999999999999877        554      14578888885543 0      111111111 1121    123


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      .++.   |+.+.-+++++++|.+++..++++
T Consensus       129 ~~~~---~d~~~~~~~~~~fD~I~~~~~~~~  156 (213)
T d1dl5a1         129 IFVC---GDGYYGVPEFSPYDVIFVTVGVDE  156 (213)
T ss_dssp             EEEE---SCGGGCCGGGCCEEEEEECSBBSC
T ss_pred             cccc---CchHHccccccchhhhhhhccHHH
Confidence            4444   788888889999999999888876

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=3e-06  Score=74.98  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      ....+|+|+|||.|..++.++        +++       + .+|...|+..+        --.......++.|..    .
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a--------~~~-------g-~~v~git~s~~--------q~~~a~~~~~~~~l~----~  111 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAV--------AEY-------D-VNVIGLTLSEN--------QYAHDKAMFDEVDSP----R  111 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHH--------HHH-------C-CEEEEEESCHH--------HHHHHHHHHHHSCCS----S
T ss_pred             CCCCEEEEecCcchHHHHHHH--------Hhc-------C-cceeeccchHH--------HHHHHHHHHHhhccc----h
Confidence            346899999999999887777        654       2 68888888876        101111111222321    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      .+-+.  -.++   .++++++|.++|.-++..+.......                        ..+-|.+|++.=.+-|
T Consensus       112 ~v~~~--~~d~---~~~~~~fD~i~sie~~eH~~~~~~~~------------------------~~~~~~~~f~~i~~~L  162 (291)
T d1kpia_         112 RKEVR--IQGW---EEFDEPVDRIVSLGAFEHFADGAGDA------------------------GFERYDTFFKKFYNLT  162 (291)
T ss_dssp             CEEEE--ECCG---GGCCCCCSEEEEESCGGGTTCCSSCC------------------------STTHHHHHHHHHHHTS
T ss_pred             hhhhh--hhcc---cccccccceEeechhHHhcchhhhhh------------------------HHHHHHHHHHHHHHhC
Confidence            22211  1343   46889999999988885432211100                        1244566777777888


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      ||||+|++..++..
T Consensus       163 kpgG~~~l~~i~~~  176 (291)
T d1kpia_         163 PDDGRMLLHTITIP  176 (291)
T ss_dssp             CTTCEEEEEEEECC
T ss_pred             CCCCceEEEEEecc
Confidence            99999999988764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.20  E-value=1.5e-06  Score=74.93  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=74.8

Q ss_pred             CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCC
Q 024331           48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA  127 (269)
Q Consensus        48 ~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~  127 (269)
                      .+.--+|+|+|||+|..++.++        +++       |+++++.-|||.-        +       . +.+.     
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------i-------~-~~~~-----  122 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELII--------SKY-------PLIKGINFDLPQV--------I-------E-NAPP-----  122 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------H-------T-TCCC-----
T ss_pred             ccCCcEEEEecCCCcHHHHHHH--------HHC-------CCCeEEEecchhh--------h-------h-ccCC-----
Confidence            3456799999999999888877        775       8899999998842        1       1 1111     


Q ss_pred             CceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024331          128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE  207 (269)
Q Consensus       128 ~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E  207 (269)
                       .--+..++|+|++ ..|..  |+++.+..||-.++                               ++-.+.|+.=++-
T Consensus       123 -~~ri~~~~gd~~~-~~p~~--D~~~l~~vLh~~~d-------------------------------e~~~~iL~~~~~a  167 (244)
T d1fp1d2         123 -LSGIEHVGGDMFA-SVPQG--DAMILKAVCHNWSD-------------------------------EKCIEFLSNCHKA  167 (244)
T ss_dssp             -CTTEEEEECCTTT-CCCCE--EEEEEESSGGGSCH-------------------------------HHHHHHHHHHHHH
T ss_pred             -CCCeEEecCCccc-ccccc--eEEEEehhhhhCCH-------------------------------HHHHHHHHHHHHH
Confidence             1224456799996 45754  99999999995321                               3344556666777


Q ss_pred             hccCCeEEEEecccCCC
Q 024331          208 LVAEGRMVLTFLGRKSQ  224 (269)
Q Consensus       208 L~pGG~lv~~~~g~~~~  224 (269)
                      |+|||++++.-...+++
T Consensus       168 L~pgg~llI~e~v~~~~  184 (244)
T d1fp1d2         168 LSPNGKVIIVEFILPEE  184 (244)
T ss_dssp             EEEEEEEEEEEEEECSS
T ss_pred             cCCCcEEEEEEEEecCC
Confidence            89999999998766543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.19  E-value=9e-07  Score=72.95  Aligned_cols=80  Identities=13%  Similarity=0.139  Sum_probs=47.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.-+|+|+|||+|..++.+.        +.+       +  +|+..|+...       .+....+.+.. .+.     .+
T Consensus        52 ~~~~VLDiGcG~G~~~~~la--------~~~-------~--~v~~iD~s~~-------~i~~a~~n~~~-~~l-----~~  101 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALA--------DEV-------K--STTMADINRR-------AIKLAKENIKL-NNL-----DN  101 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHG--------GGS-------S--EEEEEESCHH-------HHHHHHHHHHH-TTC-----TT
T ss_pred             CCCeEEEEeecCChhHHHHH--------hhc-------c--ccceeeeccc-------cchhHHHHHHH-hCC-----cc
Confidence            46799999999998887665        332       3  5677776543       01111111111 111     12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      .-+..+-++++. .++++++|+++|...+|+
T Consensus       102 ~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~  131 (194)
T d1dusa_         102 YDIRVVHSDLYE-NVKDRKYNKIITNPPIRA  131 (194)
T ss_dssp             SCEEEEECSTTT-TCTTSCEEEEEECCCSTT
T ss_pred             ceEEEEEcchhh-hhccCCceEEEEcccEEe
Confidence            222334477776 678999999999665554

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=8.1e-07  Score=77.51  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHh---cCCCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGSASGAA  127 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~---~~~~~~~~  127 (269)
                      ..+|+|+|||+|..++.++        ++         ..+|+..|+..+          ++.. ++++   .+...   
T Consensus        57 ~~~vLD~GcG~G~~~~~la--------~~---------g~~v~gvD~S~~----------ml~~-A~~~~~~~~~~~---  105 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLV--------EE---------GFSVTSVDASDK----------MLKY-ALKERWNRRKEP---  105 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHH--------HT---------TCEEEEEESCHH----------HHHH-HHHHHHHTTTSH---
T ss_pred             CCEEEEecCCCcHHHHHHH--------Hc---------CCeeeeccCchH----------HHHH-HHHHHHhccccc---
Confidence            4689999999999988877        43         268999999887          3321 2111   11100   


Q ss_pred             CceEEeecCCCcc---CCCCCCCceeeEecc-ccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024331          128 GQCFFTGVPGSFY---GRLFPRNSVHLFHSS-YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC  203 (269)
Q Consensus       128 ~~~f~~~vpgSFy---~~lfP~~Svd~~~Ss-~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~  203 (269)
                      ........-.+|.   ..+.+..++|++++. .+++++...-   .                       ...|...+|+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~---~-----------------------~~~~~~~~l~~  159 (292)
T d1xvaa_         106 AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSK---G-----------------------DQSEHRLALKN  159 (292)
T ss_dssp             HHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTT---S-----------------------SSHHHHHHHHH
T ss_pred             ccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcc---c-----------------------ChHHHHHHHHH
Confidence            0000001113332   234456789988875 4777753311   1                       11456677777


Q ss_pred             hhhhhccCCeEEEEec
Q 024331          204 RSEELVAEGRMVLTFL  219 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~~  219 (269)
                      =++-|||||+|++.+.
T Consensus       160 ~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         160 IASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHTEEEEEEEEEEEE
T ss_pred             HHHHcCcCcEEEEeec
Confidence            7888999999999865

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.6e-06  Score=73.75  Aligned_cols=87  Identities=14%  Similarity=-0.007  Sum_probs=53.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|+.|..++        +..      .|.-+|+..|.-..    +...-   .+.+.+..-.......-
T Consensus        76 ~g~~VLdiG~GsGy~ta~la--------~l~------~~~g~V~~ie~~~~----l~~~a---~~~l~~~~~~~~~~~~~  134 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFA--------RMV------GCTGKVIGIDHIKE----LVDDS---VNNVRKDDPTLLSSGRV  134 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH------CTTCEEEEEESCHH----HHHHH---HHHHHHHCTHHHHTSSE
T ss_pred             CCCeEEEecCCCCHHHHHHH--------HHh------CCCceEEEEcCCHH----HHHHH---HHhccccCcccccccce
Confidence            45899999999999998777        543      14578888886554    11111   11111110000000011


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      .+.   -|+.+.-+++.+++|.++...++++
T Consensus       135 ~~~---~gD~~~~~~~~~~fD~I~~~~~~~~  162 (224)
T d1i1na_         135 QLV---VGDGRMGYAEEAPYDAIHVGAAAPV  162 (224)
T ss_dssp             EEE---ESCGGGCCGGGCCEEEEEECSBBSS
T ss_pred             EEE---Eeecccccchhhhhhhhhhhcchhh
Confidence            233   3788888889999999999888765

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=2.2e-06  Score=74.51  Aligned_cols=72  Identities=17%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +..+|+|+|||+|..++.+.        +.         ..+|+..|....          +.. ..+++. ..+.   .
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa--------~~---------g~~V~gvDis~~----------av~-~A~~na~~n~~---~  168 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAE--------KL---------GGKALGVDIDPM----------VLP-QAEANAKRNGV---R  168 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCGG----------GHH-HHHHHHHHTTC---C
T ss_pred             ccCEEEEcccchhHHHHHHH--------hc---------CCEEEEEECChH----------HHH-HHHHHHHHcCC---c
Confidence            35799999999998877544        32         257899998765          221 122111 1112   2


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSY  156 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~  156 (269)
                      ..|+.   ++... .+|.+++|+++++.
T Consensus       169 ~~~~~---~d~~~-~~~~~~fD~V~ani  192 (254)
T d2nxca1         169 PRFLE---GSLEA-ALPFGPFDLLVANL  192 (254)
T ss_dssp             CEEEE---SCHHH-HGGGCCEEEEEEEC
T ss_pred             eeEEe---ccccc-cccccccchhhhcc
Confidence            23444   55543 57889999999853

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.1e-06  Score=68.82  Aligned_cols=105  Identities=9%  Similarity=-0.044  Sum_probs=61.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..+..++        +.       .+ .+|+..|+...          + .+.++++. ...    .
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a--------~~-------~~-~~v~~id~s~~----------~-~~~a~~~~~~~~----~  101 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQ--------EA-------PI-DEHWIIECNDG----------V-FQRLRDWAPRQT----H  101 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHH--------TS-------CE-EEEEEEECCHH----------H-HHHHHHHGGGCS----S
T ss_pred             CCCeEEEeeccchHHHHHHH--------Hc-------CC-CeEEEeCCCHH----------H-HHHHHHHhhhcc----c
Confidence            45799999999998777655        32       13 47888887654          2 12232222 111    1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEec-----cccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHS-----SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC  203 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~S-----s~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~  203 (269)
                      .+...-.-.......+|++++|+++.     ...++                                 ...|...||+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~---------------------------------~~~~~~~~~~~  148 (229)
T d1zx0a1         102 KVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETW---------------------------------HTHQFNFIKNH  148 (229)
T ss_dssp             EEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGT---------------------------------TTHHHHHHHHT
T ss_pred             ccccccccccccccccccccccceeecccccccccc---------------------------------cccCHHHHHHH
Confidence            22222122233445688999999873     11111                                 11456667777


Q ss_pred             hhhhhccCCeEEEEe
Q 024331          204 RSEELVAEGRMVLTF  218 (269)
Q Consensus       204 Ra~EL~pGG~lv~~~  218 (269)
                      =.|-|||||+|++..
T Consensus       149 ~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         149 AFRLLKPGGVLTYCN  163 (229)
T ss_dssp             HHHHEEEEEEEEECC
T ss_pred             HHHHcCCCcEEEEEe
Confidence            788899999998743

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=1.2e-05  Score=70.78  Aligned_cols=105  Identities=14%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHH---hcCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA  126 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~---~~~~~~~~  126 (269)
                      ...+|+|+|||.|..++.++        +.+        .++|...++..+          +. +..++   +.|..   
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a--------~~~--------g~~v~git~s~~----------Q~-~~a~~~~~~~g~~---  111 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAV--------EKY--------DVNVVGLTLSKN----------QA-NHVQQLVANSENL---  111 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHH----------HH-HHHHHHHHTCCCC---
T ss_pred             CCCEEEEecCcchHHHHHHH--------hcC--------CcceEEEeccHH----------HH-HHHHHHHHhhhhh---
Confidence            46899999999998888777        543        278888877765          21 11222   22221   


Q ss_pred             CCceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       127 ~~~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                       ..+-+  ..++|..   .++++|-++|..++..+.+                               +.+..|++.-.+
T Consensus       112 -~~v~~--~~~d~~~---~~~~fD~i~si~~~eh~~~-------------------------------~~~~~~~~~~~r  154 (285)
T d1kpga_         112 -RSKRV--LLAGWEQ---FDEPVDRIVSIGAFEHFGH-------------------------------ERYDAFFSLAHR  154 (285)
T ss_dssp             -SCEEE--EESCGGG---CCCCCSEEEEESCGGGTCT-------------------------------TTHHHHHHHHHH
T ss_pred             -hhhHH--HHhhhhc---ccccccceeeehhhhhcCc-------------------------------hhHHHHHHHHHh
Confidence             22222  2366644   3578999999777766321                               345567777889


Q ss_pred             hhccCCeEEEEeccc
Q 024331          207 ELVAEGRMVLTFLGR  221 (269)
Q Consensus       207 EL~pGG~lv~~~~g~  221 (269)
                      -|+|||++++..++.
T Consensus       155 ~LkpgG~~~l~~i~~  169 (285)
T d1kpga_         155 LLPADGVMLLHTITG  169 (285)
T ss_dssp             HSCTTCEEEEEEEEE
T ss_pred             hcCCCCcEEEEEEec
Confidence            999999999988874

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.7e-06  Score=73.06  Aligned_cols=112  Identities=16%  Similarity=0.134  Sum_probs=68.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHh-hHHHHHHHHHhcCCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRS-LASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~-l~~~~~~~~~~~~~~~~~~~  128 (269)
                      +.-+|+|+|||+|..++.++        +.+       +...++..|+..+=- .+-+. +..+....+ ..|...   .
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a--------~~~-------~~~~~~Gid~s~~~~-~~a~~~~~~~~~~~~-~~g~~~---~  210 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVA--------AAT-------NCKHHYGVEKADIPA-KYAETMDREFRKWMK-WYGKKH---A  210 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HHC-------CCSEEEEEECSHHHH-HHHHHHHHHHHHHHH-HHTCCC---C
T ss_pred             CCCEEEEcCCCCCHHHHHHH--------HHh-------CCCeEEEEeCCHHHH-HHHHHHHHHHHHHhh-hccccC---C
Confidence            45799999999999887766        442       445799999877611 11111 111111111 112221   2


Q ss_pred             c-eEEeecCCCccCCCCCCCc--eeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          129 Q-CFFTGVPGSFYGRLFPRNS--VHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~lfP~~S--vd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      + -|+.   |+|....|.++.  .|+++++..+||                                  .|+...|+...
T Consensus       211 ~i~~~~---gd~~~~~~~~~~~~advi~~~~~~f~----------------------------------~~~~~~l~e~~  253 (328)
T d1nw3a_         211 EYTLER---GDFLSEEWRERIANTSVIFVNNFAFG----------------------------------PEVDHQLKERF  253 (328)
T ss_dssp             CEEEEE---CCTTSHHHHHHHHHCSEEEECCTTTC----------------------------------HHHHHHHHHHH
T ss_pred             ceEEEE---CcccccccccccCcceEEEEcceecc----------------------------------hHHHHHHHHHH
Confidence            2 2444   899887777764  467777655555                                  34455666778


Q ss_pred             hhhccCCeEEEEe
Q 024331          206 EELVAEGRMVLTF  218 (269)
Q Consensus       206 ~EL~pGG~lv~~~  218 (269)
                      ++|||||++|++-
T Consensus       254 r~LKpGg~iv~~~  266 (328)
T d1nw3a_         254 ANMKEGGRIVSSK  266 (328)
T ss_dssp             TTCCTTCEEEESS
T ss_pred             HhCCCCcEEEEec
Confidence            8999999998753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=2.9e-05  Score=67.66  Aligned_cols=128  Identities=18%  Similarity=0.124  Sum_probs=77.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|+.++        +..      -|+-+|+..|.-. |+-...+      +.++...+...  ..-
T Consensus        96 PG~~VLE~G~GsG~lt~~La--------~~v------gp~G~V~~~d~~~-~~~~~Ar------~n~~~~~~~~~--~nv  152 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLL--------RAV------GPAGQVISYEQRA-DHAEHAR------RNVSGCYGQPP--DNW  152 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEECSCH-HHHHHHH------HHHHHHHTSCC--TTE
T ss_pred             CCCEEEecCcCCcHHHHHHH--------Hhh------CCCcEEEEecCCH-HHHHHHH------HhhhhhccCCC--ceE
Confidence            36899999999999999888        432      1668899888653 2211111      11111111111  012


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      .|+.   +++....||++++|.++.        ++|.+               ..+.+..               ++.||
T Consensus       153 ~~~~---~d~~~~~~~~~~fDaV~l--------dlp~P---------------~~~l~~~---------------~~~Lk  191 (264)
T d1i9ga_         153 RLVV---SDLADSELPDGSVDRAVL--------DMLAP---------------WEVLDAV---------------SRLLV  191 (264)
T ss_dssp             EEEC---SCGGGCCCCTTCEEEEEE--------ESSCG---------------GGGHHHH---------------HHHEE
T ss_pred             EEEe---cccccccccCCCcceEEE--------ecCCH---------------HHHHHHH---------------HhccC
Confidence            3444   888889999999999985        35542               1222233               67788


Q ss_pred             cCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHc-cCccccc
Q 024331          210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSE-VTKSFLL  255 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~e-G~i~~~~  255 (269)
                      |||++++..+..              +.+.+++..|..+ |.++.+.
T Consensus       192 pGG~lv~~~P~i--------------~Qv~~~~~~l~~~~~f~~i~~  224 (264)
T d1i9ga_         192 AGGVLMVYVATV--------------TQLSRIVEALRAKQCWTEPRA  224 (264)
T ss_dssp             EEEEEEEEESSH--------------HHHHHHHHHHHHHSSBCCCEE
T ss_pred             CCCEEEEEeCcc--------------ChHHHHHHHHHHcCCeecceE
Confidence            999998765222              3466666667544 5554443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.85  E-value=3.6e-06  Score=68.87  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=47.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      +.-+|+|+|||+|..|+.++        ++         --+|+..|.-.+          +. +.++++. ..++  ..
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA--------~~---------~~~V~avD~~~~----------~l-~~a~~n~~~~gl--~~   82 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELA--------GR---------VRRVYAIDRNPE----------AI-STTEMNLQRHGL--GD   82 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------TT---------SSEEEEEESCHH----------HH-HHHHHHHHHTTC--CT
T ss_pred             CCCEEEEEECCeEccccccc--------cc---------ceEEEEecCCHH----------HH-HHHHHHHHHcCC--Cc
Confidence            45799999999999988766        32         247888887655          21 1122211 1111  12


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEecc
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSS  155 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss  155 (269)
                      ++-  .+.|++...+++..++|.+++.
T Consensus        83 ~v~--~~~gda~~~~~~~~~~D~v~~~  107 (186)
T d1l3ia_          83 NVT--LMEGDAPEALCKIPDIDIAVVG  107 (186)
T ss_dssp             TEE--EEESCHHHHHTTSCCEEEEEES
T ss_pred             ceE--EEECchhhcccccCCcCEEEEe
Confidence            332  2348888888999999999973

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=3.5e-05  Score=71.07  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=29.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ...+|+|+|||+|..++.++        +.+       +..+|+..|+..+
T Consensus       216 pgd~fLDLGCG~G~~vl~aA--------~~~-------g~~~v~GIDiS~~  251 (406)
T d1u2za_         216 KGDTFMDLGSGVGNCVVQAA--------LEC-------GCALSFGCEIMDD  251 (406)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHH-------CCSEEEEEECCHH
T ss_pred             CCCEEEeCCCCCcHHHHHHH--------HHc-------CCCeEEEEeCCHH
Confidence            35799999999999988777        554       4458999999876

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.72  E-value=5.9e-05  Score=64.27  Aligned_cols=101  Identities=17%  Similarity=0.224  Sum_probs=67.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|..++.++        +++       |..+++.-|||.-        +..        ..      ..
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------i~~--------~~------~~  123 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIV--------SKY-------PTIKGINFDLPHV--------IED--------AP------SY  123 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHH--------HHC-------TTSEEEEEECTTT--------TTT--------CC------CC
T ss_pred             CCcEEEEecCCCcHHHHHHH--------HHC-------CCCeEEEcccHHh--------hhh--------cc------cC
Confidence            34689999999999988888        775       7899999999975        211        11      11


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccc-ccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH-WLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      --+..++++|+.. .|.+-+  .+-...|| |                                ..++...+|+.=++-|
T Consensus       124 ~r~~~~~~d~~~~-~P~ad~--~~l~~vlh~~--------------------------------~d~~~~~iL~~~~~al  168 (243)
T d1kyza2         124 PGVEHVGGDMFVS-IPKADA--VFMKWICHDW--------------------------------SDEHCLKFLKNCYEAL  168 (243)
T ss_dssp             TTEEEEECCTTTC-CCCCSC--EECSSSSTTS--------------------------------CHHHHHHHHHHHHHHC
T ss_pred             CceEEeccccccc-CCCcce--EEEEEEeecC--------------------------------CHHHHHHHHHHHHHhc
Confidence            2244467999874 676544  33333444 4                                1134556666667778


Q ss_pred             ccCCeEEEEecccC
Q 024331          209 VAEGRMVLTFLGRK  222 (269)
Q Consensus       209 ~pGG~lv~~~~g~~  222 (269)
                      +|||++++.-.-..
T Consensus       169 ~pgg~~li~d~~~~  182 (243)
T d1kyza2         169 PDNGKVIVAECILP  182 (243)
T ss_dssp             CSSSCEEEEECEEC
T ss_pred             CCCceEEEEEEEec
Confidence            99999999865443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.70  E-value=4e-05  Score=66.24  Aligned_cols=125  Identities=7%  Similarity=0.011  Sum_probs=74.9

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~  128 (269)
                      ...+|+|+|||+|..|+.++        +..      .|.-+|+..|.... |          .+.++++. ....  ..
T Consensus        85 pG~rVLEiG~GsG~lt~~la--------~~v------~~~g~V~~vD~~e~-~----------~~~A~~n~~~~~~--~~  137 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYIL--------YAL------NGKGTLTVVERDED-N----------LKKAMDNLSEFYD--IG  137 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------TTSSEEEEECSCHH-H----------HHHHHHHHHTTSC--CT
T ss_pred             CcCEEEEeeeeCcHHHHHHH--------HHh------CCCcEEEEEECCHH-H----------HHHHHHHHHHhcC--CC
Confidence            35899999999999999887        432      15678888885432 2          22222221 1000  02


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL  208 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL  208 (269)
                      ++-  ..-+++.+. +|++++|.++..        +|..               ..+.+..               ++-|
T Consensus       138 nv~--~~~~Di~~~-~~~~~fD~V~ld--------~p~p---------------~~~l~~~---------------~~~L  176 (250)
T d1yb2a1         138 NVR--TSRSDIADF-ISDQMYDAVIAD--------IPDP---------------WNHVQKI---------------ASMM  176 (250)
T ss_dssp             TEE--EECSCTTTC-CCSCCEEEEEEC--------CSCG---------------GGSHHHH---------------HHTE
T ss_pred             ceE--EEEeeeecc-cccceeeeeeec--------CCch---------------HHHHHHH---------------HHhc
Confidence            222  222677654 789999999862        3321               1112222               5678


Q ss_pred             ccCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCcccccc
Q 024331          209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLL  256 (269)
Q Consensus       209 ~pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~  256 (269)
                      ||||++++..+.              .+.+...+..|.+.|....+.+
T Consensus       177 KpGG~lv~~~P~--------------i~Qv~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         177 KPGSVATFYLPN--------------FDQSEKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             EEEEEEEEEESS--------------HHHHHHHHHHSGGGTEEEEEEE
T ss_pred             CCCceEEEEeCC--------------cChHHHHHHHHHHCCCceeEEE
Confidence            899999986432              1356777788888887554443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.57  E-value=6.7e-05  Score=64.25  Aligned_cols=102  Identities=19%  Similarity=0.313  Sum_probs=70.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ..-+|+|+|||+|..++.++        +++       |+++++.-|||.-        +.        ..+.      .
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------i~--------~~~~------~  122 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIIC--------ETF-------PKLKCIVFDRPQV--------VE--------NLSG------S  122 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHHH--------HT--------TCCC------B
T ss_pred             CceEEEEecCCccHHHHHHH--------HhC-------CCCeEEEecCHHH--------HH--------hCcc------c
Confidence            45689999999999888777        776       7899999999842        11        1111      1


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      -.+..++|+|+.. .|  ..|+++....||-.++                               ++..++|+.=++-|+
T Consensus       123 ~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d-------------------------------~~~~~iL~~~~~al~  168 (244)
T d1fp2a2         123 NNLTYVGGDMFTS-IP--NADAVLLKYILHNWTD-------------------------------KDCLRILKKCKEAVT  168 (244)
T ss_dssp             TTEEEEECCTTTC-CC--CCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHHS
T ss_pred             CceEEEecCcccC-CC--CCcEEEEEeecccCCh-------------------------------HHHHHHHHHHHHHcC
Confidence            1244567999974 35  4599999999994211                               345566666678889


Q ss_pred             cC---CeEEEEecccC
Q 024331          210 AE---GRMVLTFLGRK  222 (269)
Q Consensus       210 pG---G~lv~~~~g~~  222 (269)
                      ||   |++++.-.-.+
T Consensus       169 pgg~~~~lli~e~~~~  184 (244)
T d1fp2a2         169 NDGKRGKVTIIDMVID  184 (244)
T ss_dssp             GGGCCCEEEEEECEEC
T ss_pred             cccCCcEEEEEEeecC
Confidence            99   67777655444

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=6.3e-05  Score=65.81  Aligned_cols=128  Identities=16%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .++.+|+|+|||+|.-++.++        ..       .|..+|+..|....=       +.--..-.+ +.+.     .
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la--------~~-------~p~~~v~avDis~~A-------l~~A~~Na~-~~~~-----~  158 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALA--------SE-------RPDCEIIAVDRMPDA-------VSLAQRNAQ-HLAI-----K  158 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHH--------HH-------CTTSEEEEECSSHHH-------HHHHHHHHH-HHTC-----C
T ss_pred             ccccceeeeehhhhHHHHHHH--------hh-------CCcceeeeccchhHH-------HhHHHHHHH-HhCc-----c
Confidence            457899999999999988777        43       378999999976541       110000011 1121     1


Q ss_pred             ceEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceE--EcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIF--MASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       129 ~~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~--~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      ++  .-+-++++.. +|++++|+++|+         |+.+..+.-..-  +....|..+..+ -+-....++++++.=.+
T Consensus       159 ~v--~~~~~d~~~~-~~~~~fDlIvsN---------PPYi~~~~~~~~~~v~~~eP~~AL~~-g~dGl~~~~~i~~~a~~  225 (274)
T d2b3ta1         159 NI--HILQSDWFSA-LAGQQFAMIVSN---------PPYIDEQDPHLQQGDVRFEPLTALVA-ADSGMADIVHIIEQSRN  225 (274)
T ss_dssp             SE--EEECCSTTGG-GTTCCEEEEEEC---------CCCBCTTCHHHHSSGGGSSCSTTTBC-HHHHTHHHHHHHHHHGG
T ss_pred             cc--eeeecccccc-cCCCceeEEEec---------chhhhhhhhcccccccccchhhhccc-ccccchHHHHHHHHHHH
Confidence            22  2234788774 577899999995         544432100000  000001000000 01133445556665556


Q ss_pred             hhccCCeEEEE
Q 024331          207 ELVAEGRMVLT  217 (269)
Q Consensus       207 EL~pGG~lv~~  217 (269)
                      -|+|||.+++-
T Consensus       226 ~L~~~G~l~lE  236 (274)
T d2b3ta1         226 ALVSGGFLLLE  236 (274)
T ss_dssp             GEEEEEEEEEE
T ss_pred             hcCCCCEEEEE
Confidence            67899999983

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.47  E-value=0.00019  Score=60.60  Aligned_cols=88  Identities=17%  Similarity=0.122  Sum_probs=50.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHH-HhcCCCCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR-KQLGSASGAAG  128 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~~~~~~~~  128 (269)
                      +.-+|+|+|||||+.|..+.        +.+...|. .+...|+..|.-.    .+++.-........ ...+  .   .
T Consensus        80 ~g~~VLeIGtGsGY~ta~la--------~l~g~~g~-~~~~~V~~iE~~~----~l~~~a~~~l~~~~~~~~~--~---~  141 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFY--------RYIKAKGV-DADTRIVGIEHQA----ELVRRSKANLNTDDRSMLD--S---G  141 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHH--------HHHHHSCC-CTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHH--H---T
T ss_pred             CCCeEEEecCCCCHHHHHHH--------HHhhhccC-CcccEEEEEecCH----HHHHHHHHhhhhcchhhcC--c---c
Confidence            46899999999999998776        44433332 2346677776422    22221111111110 0001  0   1


Q ss_pred             c-eEEeecCCCccCCCCCCCceeeEeccccc
Q 024331          129 Q-CFFTGVPGSFYGRLFPRNSVHLFHSSYSL  158 (269)
Q Consensus       129 ~-~f~~~vpgSFy~~lfP~~Svd~~~Ss~al  158 (269)
                      + .++.   |+...-..+.+.+|.++...++
T Consensus       142 nv~~~~---~d~~~~~~~~~~fD~Iiv~~a~  169 (223)
T d1r18a_         142 QLLIVE---GDGRKGYPPNAPYNAIHVGAAA  169 (223)
T ss_dssp             SEEEEE---SCGGGCCGGGCSEEEEEECSCB
T ss_pred             EEEEEe---cccccccccccceeeEEEEeec
Confidence            2 3333   7777777788899999997665

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.41  E-value=0.00024  Score=60.15  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=45.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +..+|+|+|||+|+.|..+.        +..         -+|+..|.-..           +.+..++.... .  ..-
T Consensus        70 ~g~~VLdIG~GsGy~ta~La--------~l~---------~~V~aiE~~~~-----------~~~~A~~~~~~-~--~nv  118 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIA--------EIV---------DKVVSVEINEK-----------MYNYASKLLSY-Y--NNI  118 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHS---------SEEEEEESCHH-----------HHHHHHHHHTT-C--SSE
T ss_pred             ccceEEEecCCCCHHHHHHH--------HHh---------cccccccccHH-----------HHHHHHHHHhc-c--ccc
Confidence            46799999999999998666        432         35666664322           22222222111 1  012


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW  160 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHW  160 (269)
                      .++.   |+.+.-..+.+.+|.++...++++
T Consensus       119 ~~~~---~d~~~g~~~~~pfD~Iiv~~a~~~  146 (224)
T d1vbfa_         119 KLIL---GDGTLGYEEEKPYDRVVVWATAPT  146 (224)
T ss_dssp             EEEE---SCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             cccc---CchhhcchhhhhHHHHHhhcchhh
Confidence            3333   565555556678999998776553

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=0.00059  Score=58.97  Aligned_cols=127  Identities=17%  Similarity=0.157  Sum_probs=73.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+|||+|..|+.++        +..      .|.-+|+..|.-.. +-.+.+      +.+. +.+..    .+
T Consensus       103 pG~~VLDiG~GsG~lt~~lA--------~~~------~~~G~V~~vD~~~~-~~~~A~------~~~~-~~g~~----~~  156 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLA--------RAV------GSSGKVFAYEKREE-FAKLAE------SNLT-KWGLI----ER  156 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHT------TTTCEEEEECCCHH-HHHHHH------HHHH-HTTCG----GG
T ss_pred             CCCEEEECCCCCCHHHHHHH--------HHh------CCCcEEEEEeCCHH-HHHHHH------HHHH-Hhccc----cC
Confidence            46899999999999999887        442      25678888887653 211111      1111 11210    12


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV  209 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~  209 (269)
                      +-+  .-++. ...++..++|.++-        ++|.               +..+.+..               .+-||
T Consensus       157 v~~--~~~d~-~~~~~~~~~D~V~~--------d~p~---------------p~~~l~~~---------------~~~LK  195 (266)
T d1o54a_         157 VTI--KVRDI-SEGFDEKDVDALFL--------DVPD---------------PWNYIDKC---------------WEALK  195 (266)
T ss_dssp             EEE--ECCCG-GGCCSCCSEEEEEE--------CCSC---------------GGGTHHHH---------------HHHEE
T ss_pred             cEE--Eeccc-cccccccceeeeEe--------cCCC---------------HHHHHHHH---------------HhhcC
Confidence            222  22443 34577888888864        2332               22222222               45677


Q ss_pred             cCCeEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHHccCccccccc
Q 024331          210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEVTKSFLLLI  257 (269)
Q Consensus       210 pGG~lv~~~~g~~~~~~~~~~~~~~~~~l~~~l~~mv~eG~i~~~~~d  257 (269)
                      |||++++..+.              .+.+.+.+..|.+.|..+.+.++
T Consensus       196 pGG~lv~~~P~--------------~~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         196 GGGRFATVCPT--------------TNQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             EEEEEEEEESS--------------HHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             CCCEEEEEeCc--------------ccHHHHHHHHHHHCCceeEEEEE
Confidence            99999986532              13567777888888875555443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00045  Score=61.56  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF  102 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF  102 (269)
                      ...+|+|+|||+|..|+.++        +..      .|+-+|+.-|.-. +|
T Consensus        98 pG~rVLE~GtGsG~lt~~LA--------r~v------g~~G~V~t~E~~~-~~  135 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLS--------KAV------GSQGRVISFEVRK-DH  135 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHH--------HHH------CTTCEEEEEESSH-HH
T ss_pred             CCCEEEEecccccHHHHHHH--------HHh------CCCcEEEEecCCH-HH
Confidence            36899999999999999888        432      1567888888743 44

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.93  E-value=0.0034  Score=51.06  Aligned_cols=45  Identities=18%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      .++++|.+.|||||-=...++-.+-+.    .   ......++|+..|+..+
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~----~---~~~~~~~~I~atDi~~~   67 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADA----L---GMAPGRWKVFASDIDTE   67 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHH----H---CSCTTSEEEEEEESCHH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHh----h---hhcCCceEEEeecCChH
Confidence            467999999999997655444323222    1   12335799999998654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.58  E-value=0.0039  Score=52.03  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.-+|+|+|||+|+.|..+.        +.+.        -+|+..|.-..        +-....+..++.+  +  ..-
T Consensus        78 ~g~~VLeIGsGsGY~taila--------~l~g--------~~V~~ie~~~~--------l~~~a~~~l~~~g--~--~nv  129 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALIS--------EIVK--------TDVYTIERIPE--------LVEFAKRNLERAG--V--KNV  129 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHH--------HHHC--------SCEEEEESCHH--------HHHHHHHHHHHTT--C--CSE
T ss_pred             ccceEEEecCCCChhHHHHH--------HhhC--------ceeEEEeccHH--------HHHHHHHHHHHcC--C--cee
Confidence            35799999999999998766        3331        23444443221        1111111111222  1  123


Q ss_pred             eEEeecCCCccCCCCCCCceeeEecccccc
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ  159 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alH  159 (269)
                      .++.   |+-+.-..+.+.+|.++..-++.
T Consensus       130 ~~~~---gd~~~g~~~~~pfD~Iiv~~a~~  156 (215)
T d1jg1a_         130 HVIL---GDGSKGFPPKAPYDVIIVTAGAP  156 (215)
T ss_dssp             EEEE---SCGGGCCGGGCCEEEEEECSBBS
T ss_pred             EEEE---CccccCCcccCcceeEEeecccc
Confidence            4544   66677677788999999866664

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.011  Score=51.65  Aligned_cols=116  Identities=14%  Similarity=0.031  Sum_probs=68.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.-+|+|++|++|..|+.++        ..         ..+|+..|....       .+....+-+. ..|..    .-
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a--------~g---------~~~V~~vD~s~~-------al~~a~~n~~-~ngl~----~~  195 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLA--------LG---------FREVVAVDSSAE-------ALRRAEENAR-LNGLG----NV  195 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHH--------HH---------EEEEEEEESCHH-------HHHHHHHHHH-HTTCT----TE
T ss_pred             CCCeeeccCCCCcHHHHHHH--------hc---------CCcEEeecchHH-------HHHHHHHHHH-HcCCC----Cc
Confidence            35799999999999987654        32         257888887664       1211111111 22221    12


Q ss_pred             eEEeecCCCccC---C-CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYG---R-LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~---~-lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      -|+.   ++.+.   . .....++|+|+.        + |+.+..          +...     ...+.++...+++.=.
T Consensus       196 ~~i~---~d~~~~~~~~~~~~~~fD~Vi~--------D-pP~~~~----------~~~~-----~~~~~~~~~~l~~~a~  248 (318)
T d1wxxa2         196 RVLE---ANAFDLLRRLEKEGERFDLVVL--------D-PPAFAK----------GKKD-----VERAYRAYKEVNLRAI  248 (318)
T ss_dssp             EEEE---SCHHHHHHHHHHTTCCEEEEEE--------C-CCCSCC----------STTS-----HHHHHHHHHHHHHHHH
T ss_pred             ceee---ccHHHHhhhhHhhhcCCCEEEE--------c-CCcccc----------chHH-----HHHHHHHHHHHHHHHH
Confidence            3444   33322   1 234568999998        2 333321          1111     2235577788888888


Q ss_pred             hhhccCCeEEEEeccc
Q 024331          206 EELVAEGRMVLTFLGR  221 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~  221 (269)
                      +-|+|||.|+++....
T Consensus       249 ~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         249 KLLKEGGILATASCSH  264 (318)
T ss_dssp             HTEEEEEEEEEEECCT
T ss_pred             HHcCCCCEEEEEeCCc
Confidence            8999999999987654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.0029  Score=51.94  Aligned_cols=110  Identities=20%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|.+||+|.-|..++        +++       |...|+..|.-..          ++. ..+++.. .++ .+-.
T Consensus        24 ~~~~lD~t~G~Gghs~~il--------~~~-------~~~~vi~~D~d~~----------~l~-~a~~~l~-~~~-~r~~   75 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAIL--------EHC-------PGCRIIGIDVDSE----------VLR-IAEEKLK-EFS-DRVS   75 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHH--------HHC-------TTCEEEEEESCHH----------HHH-HHHHHTG-GGT-TTEE
T ss_pred             CCEEEEecCCCcHHHHHHH--------hcC-------CCCeEEEeechHH----------HHH-HHHHhhc-ccc-cccc
Confidence            4699999999999999888        653       5688999997554          221 1221110 010 0123


Q ss_pred             EEeecCCCccC-----CCCCCCcee-----eEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHH
Q 024331          131 FFTGVPGSFYG-----RLFPRNSVH-----LFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLF  200 (269)
Q Consensus       131 f~~~vpgSFy~-----~lfP~~Svd-----~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F  200 (269)
                      ++.   ++|-+     .-++.++||     +++|++-+-..                             .+.-.....+
T Consensus        76 ~~~---~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~-----------------------------~r~~~~~~~~  123 (192)
T d1m6ya2          76 LFK---VSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGE-----------------------------NRELENLKEF  123 (192)
T ss_dssp             EEE---CCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTS-----------------------------HTHHHHHHHH
T ss_pred             chh---HHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhh-----------------------------hccchhHHHH
Confidence            333   55533     233345554     44665433221                             1123456788


Q ss_pred             HhhhhhhhccCCeEEEEecc
Q 024331          201 LKCRSEELVAEGRMVLTFLG  220 (269)
Q Consensus       201 L~~Ra~EL~pGG~lv~~~~g  220 (269)
                      |..+.+-|+|||+|++..+-
T Consensus       124 L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2         124 LKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             HHHGGGGEEEEEEEEEEESS
T ss_pred             HHHHHHhcCCCCeeeeeccc
Confidence            99999999999999987643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.34  E-value=0.0086  Score=52.52  Aligned_cols=117  Identities=11%  Similarity=0.019  Sum_probs=69.4

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      ..+|+|+|||+|..|+.++        ..        ..-+|+..|+...       .+....+-+. ..|..-   .-.
T Consensus       146 g~~VLDl~~g~G~~si~~a--------~~--------ga~~V~~vD~s~~-------al~~a~~N~~-~ngl~~---~~~  198 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAA--------IA--------GADEVIGIDKSPR-------AIETAKENAK-LNGVED---RMK  198 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHH--------HT--------TCSEEEEEESCHH-------HHHHHHHHHH-HTTCGG---GEE
T ss_pred             CCeeecccCcccchhhhhh--------hc--------CCcEEEeecCCHH-------HHHHHHHHHH-HcCCCc---cce
Confidence            4799999999999988666        32        1247999998664       0111111111 122210   113


Q ss_pred             EEeecCCCccCC----CCCCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGR----LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~----lfP~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      |+.   |+.+..    .....++|++++        + |+.+..          +...     ...+.++..+++..=.+
T Consensus       199 ~~~---~d~~~~~~~~~~~~~~fD~Vi~--------D-pP~~~~----------~~~~-----~~~~~~~y~~l~~~a~~  251 (324)
T d2as0a2         199 FIV---GSAFEEMEKLQKKGEKFDIVVL--------D-PPAFVQ----------HEKD-----LKAGLRAYFNVNFAGLN  251 (324)
T ss_dssp             EEE---SCHHHHHHHHHHTTCCEEEEEE--------C-CCCSCS----------SGGG-----HHHHHHHHHHHHHHHHT
T ss_pred             eee---chhhhhhHHHHhccCCCCchhc--------C-CccccC----------CHHH-----HHHHHHHHHHHHHHHHH
Confidence            444   665542    234578999998        2 333321          1111     12355777888888888


Q ss_pred             hhccCCeEEEEeccc
Q 024331          207 ELVAEGRMVLTFLGR  221 (269)
Q Consensus       207 EL~pGG~lv~~~~g~  221 (269)
                      -|+|||+|+++....
T Consensus       252 ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         252 LVKDGGILVTCSCSQ  266 (324)
T ss_dssp             TEEEEEEEEEEECCT
T ss_pred             HcCCCcEEEEEeCCc
Confidence            999999999988655

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.013  Score=49.67  Aligned_cols=79  Identities=9%  Similarity=-0.040  Sum_probs=48.2

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCC
Q 024331           49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG  128 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~  128 (269)
                      .+..+|+|+|||+|.-++.++        .++       |..+++..|....=       +. ...+-.+..+..    .
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~--------~~~-------~~~~~~~~Di~~~a-------l~-~A~~N~~~n~l~----~  112 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLG--------ATL-------NGWYFLATEVDDMC-------FN-YAKKNVEQNNLS----D  112 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHH--------HHH-------HCCEEEEEESCHHH-------HH-HHHHHHHHTTCT----T
T ss_pred             cccceEEEeCCCchHHHHHHH--------HhC-------CCccccceecCHHH-------HH-HHHHHHHHhCCC----c
Confidence            346899999999999998887        544       57899999987651       11 101011111211    2


Q ss_pred             ceEEe--ecCCCccCCCC--CCCceeeEec
Q 024331          129 QCFFT--GVPGSFYGRLF--PRNSVHLFHS  154 (269)
Q Consensus       129 ~~f~~--~vpgSFy~~lf--P~~Svd~~~S  154 (269)
                      .+.+.  .....++..++  .++++|+++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~fD~ivs  142 (250)
T d2h00a1         113 LIKVVKVPQKTLLMDALKEESEIIYDFCMC  142 (250)
T ss_dssp             TEEEEECCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred             ceeeeeeccHHhhhhhhhhcccCceeEEEe
Confidence            33332  23455555554  3568999999

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.35  E-value=0.014  Score=50.24  Aligned_cols=74  Identities=26%  Similarity=0.384  Sum_probs=43.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhc-CCCCCCCCc
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ  129 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~  129 (269)
                      ..+|+|+|||+|.-++.+.        +.        |..+|++.|....          .+. -.+++. ..+.  ...
T Consensus       111 ~~~vld~g~GsG~i~~~la--------~~--------~~~~v~a~Dis~~----------Al~-~A~~Na~~~~~--~~~  161 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVA--------KF--------SDAIVFATDVSSK----------AVE-IARKNAERHGV--SDR  161 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHH--------HH--------SSCEEEEEESCHH----------HHH-HHHHHHHHTTC--TTS
T ss_pred             ccEEEEeeeeeehhhhhhh--------hc--------ccceeeechhhhh----------HHH-HHHHHHHHcCC--Cce
Confidence            5689999999997665544        32        6789999997654          211 111111 0111  123


Q ss_pred             eEEeecCCCccCCCC-CCCceeeEecc
Q 024331          130 CFFTGVPGSFYGRLF-PRNSVHLFHSS  155 (269)
Q Consensus       130 ~f~~~vpgSFy~~lf-P~~Svd~~~Ss  155 (269)
                      +++.  -++++..+- ..+.+|+++|+
T Consensus       162 ~~i~--~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         162 FFVR--KGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             EEEE--ESSTTGGGGGGTTTCCEEEEC
T ss_pred             eEEe--ecccccccccccCcccEEEEc
Confidence            4443  266666332 22689999994

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=94.07  E-value=0.11  Score=45.27  Aligned_cols=119  Identities=13%  Similarity=0.083  Sum_probs=65.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      +.-+|+|+.|++|..|+..+        ..        ..-.|+..|+...       .+....+.+. .++.+.  ..-
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa--------~~--------ga~~V~~vD~s~~-------a~~~a~~N~~-~n~l~~--~~~  197 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAA--------MG--------GAMATTSVDLAKR-------SRALSLAHFE-ANHLDM--ANH  197 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHH--------HT--------TBSEEEEEESCTT-------HHHHHHHHHH-HTTCCC--TTE
T ss_pred             CCCceeecCCCCcHHHHHHH--------hC--------CCceEEEecCCHH-------HHHHHHHHHH-HhcccC--cce
Confidence            35799999999999887655        22        1357889998775       1111111111 122211  112


Q ss_pred             eEEeecCCCccC---CCC-CCCceeeEeccccccccccCCCCCCCCCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYG---RLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~---~lf-P~~Svd~~~Ss~alHWLS~~P~~l~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      -|+.   ++.+.   ++- -...+|+++.         =|+.+..++..++               .+.+|....++.=.
T Consensus       198 ~~i~---~d~~~~l~~~~~~~~~fD~Ii~---------DPP~f~~~~~~~~---------------~~~~~~~~L~~~a~  250 (317)
T d2b78a2         198 QLVV---MDVFDYFKYARRHHLTYDIIII---------DPPSFARNKKEVF---------------SVSKDYHKLIRQGL  250 (317)
T ss_dssp             EEEE---SCHHHHHHHHHHTTCCEEEEEE---------CCCCC-----CCC---------------CHHHHHHHHHHHHH
T ss_pred             EEEE---ccHHHHHHHHHhhcCCCCEEEE---------cChhhccchhHHH---------------HHHHHHHHHHHHHH
Confidence            3444   44433   122 2357899987         2555543222211               14456666666666


Q ss_pred             hhhccCCeEEEEeccc
Q 024331          206 EELVAEGRMVLTFLGR  221 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~  221 (269)
                      +-|+|||.|+++....
T Consensus       251 ~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         251 EILSENGLIIASTNAA  266 (317)
T ss_dssp             HTEEEEEEEEEEECCT
T ss_pred             HHcCCCCEEEEEeCCc
Confidence            7799999999987644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.80  E-value=0.036  Score=43.84  Aligned_cols=21  Identities=29%  Similarity=0.218  Sum_probs=16.6

Q ss_pred             CCceEEEeecCCCCcccHHHH
Q 024331           49 PTKVAIADLGCSSGPNTLLVA   69 (269)
Q Consensus        49 ~~~~~IaD~GCs~G~Ns~~~~   69 (269)
                      ++.-+|+|+|||+|..++..+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~   60 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAA   60 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHH
T ss_pred             cCCCeEEEeccccchhhhhhh
Confidence            345699999999998776554

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.97  E-value=0.22  Score=43.32  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=26.8

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+.|+||..|+.++        ..         -.+|++.|....
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa--------~~---------GA~V~~VD~s~~  165 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAA--------AA---------GAEVTHVDASKK  165 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEECSCHH
T ss_pred             CCCeEEEecCCCcHHHHHHH--------hC---------CCeEEEEeChHH
Confidence            46799999999999988766        32         257999997654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.54  E-value=0.52  Score=37.02  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=17.6

Q ss_pred             HHHHhhhhhhhccCCeEEEEeccc
Q 024331          198 SLFLKCRSEELVAEGRMVLTFLGR  221 (269)
Q Consensus       198 ~~FL~~Ra~EL~pGG~lv~~~~g~  221 (269)
                      ..|+..=-+-|+|||++++.++..
T Consensus       124 ~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1         124 GAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             HHHHHHHHHhcccCCceEEEEeee
Confidence            345665566788999999988643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.38  E-value=0.15  Score=42.33  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=28.3

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++-+|+++|+++|..|+.++        +..      ++.-+|+..|.-.+
T Consensus        59 ~~k~iLEiGT~~GyStl~la--------~al------~~~g~v~tie~~~~   95 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATA--------LAI------PEDGKILAMDINKE   95 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHH--------HHS------CTTCEEEEEESCCH
T ss_pred             CCCcEEEecchhhhhHHHHH--------hhC------CCCcEEEEEeccch
Confidence            57899999999999999888        442      13467887776554

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.03  E-value=0.11  Score=42.09  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..++.++        .+        ....|++.|.-..
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~--------~~--------g~~~v~~vdi~~~   80 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGAL--------LL--------GAKEVICVEVDKE   80 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEESCHH
T ss_pred             CCCEEEECcCcchHHHHHHH--------Hc--------CCCEEEEEcCcHH
Confidence            35799999999998776554        32        2358899987653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.23  E-value=0.096  Score=42.68  Aligned_cols=32  Identities=16%  Similarity=0.027  Sum_probs=23.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDL   97 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL   97 (269)
                      ..-+|+|+|||+|..++.+.        .+        ..-+|+..|.
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~--------~~--------ga~~V~~vDi   79 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSY--------LL--------GAESVTAFDI   79 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHH--------HT--------TBSEEEEEES
T ss_pred             CCCEEEEeCCCCcHHHHHHH--------Hc--------CCCccccccc
Confidence            35799999999997776544        32        1247899995

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.25  Score=40.56  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=28.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ++-+|+++||++|..|+.++        +..      ++.-+|+..|....
T Consensus        59 ~~k~vLEiGt~~GyStl~~a--------~al------~~~g~i~tie~~~~   95 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALA--------LAL------PADGRVVTCEVDAQ   95 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCSH
T ss_pred             CCCeEEEEechhhHHHHHHH--------HhC------CCCceEEEEeechh
Confidence            57899999999999999887        321      23568888886553

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=87.95  E-value=0.49  Score=39.11  Aligned_cols=49  Identities=24%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             CceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331           50 TKVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDF  102 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF  102 (269)
                      +.-+|+++|||+|.-|..+++.            .++.+++++    ...+.++++..|.-.-|+
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~----~~~~n~~i~~~D~l~~~~   81 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKL----VDHDNFQVLNKDILQFKF   81 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHT----TTCCSEEEECCCGGGCCC
T ss_pred             CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHh----hcccchhhhhhhhhhccc
Confidence            4679999999999999988754            456666554    234678888887544443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.87  E-value=0.16  Score=38.97  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=25.7

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +..+|+|+|||+|..++..+        .+    |   . -+|++.|.-.+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~--------~r----g---a-~~v~~ve~~~~   48 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAV--------SR----G---M-SAAVLVEKNRK   48 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHH--------HT----T---C-CEEEEECCCHH
T ss_pred             CCCeEEEcCCccCHHHHHHH--------Hh----C---c-ceeeeehhchh
Confidence            35799999999998877554        32    1   2 48999997654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.80  E-value=0.17  Score=42.58  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=28.1

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      +.-+|+|+|||+|+.|+.++        ++        ...+|+..|+-.+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a--------~~--------~~~~V~avd~n~~  141 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIA--------VY--------GKAKVIAIEKDPY  141 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHH--------HH--------TCCEEEEECCCHH
T ss_pred             CccEEEECcceEcHHHHHHH--------Hh--------CCcEEEEecCCHH
Confidence            35799999999999999777        44        2358999998654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.45  Score=40.33  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCc
Q 024331           50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ  129 (269)
Q Consensus        50 ~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~  129 (269)
                      ...+|+|+-+|.|.-|+.++        +..       ....|+.+|...+-...|-+.+.        +.|.     .+
T Consensus       102 ~g~~vLD~CAaPGgKt~~la--------~l~-------~~~~i~a~d~~~~R~~~l~~~~~--------r~g~-----~~  153 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHIL--------EVA-------PEAQVVAVDIDEQRLSRVYDNLK--------RLGM-----KA  153 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHH--------HHC-------TTCEEEEEESSTTTHHHHHHHHH--------HTTC-----CC
T ss_pred             ccceeEeccCccccchhhhh--------hhh-------hhhhhhhhhcchhhhhhHhhhhh--------cccc-----cc
Confidence            35799999999999999777        331       23789999998885544433332        2222     23


Q ss_pred             eEEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC----CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024331          130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS  205 (269)
Q Consensus       130 ~f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra  205 (269)
                      +.+. .-+.......+...+|.|.-        ++|++=..    +.+--|.  .++..+ +.    ..+-=..+|+.=+
T Consensus       154 ~~~~-~~~~~~~~~~~~~~fd~IL~--------DaPCSg~G~~rr~p~~~~~--~~~~~~-~~----l~~lQ~~iL~~a~  217 (284)
T d1sqga2         154 TVKQ-GDGRYPSQWCGEQQFDRILL--------DAPCSATGVIRRHPDIKWL--RRDRDI-PE----LAQLQSEILDAIW  217 (284)
T ss_dssp             EEEE-CCTTCTHHHHTTCCEEEEEE--------ECCCCCGGGTTTCTTHHHH--CCTTHH-HH----HHHHHHHHHHHHG
T ss_pred             eeee-ccccccchhcccccccEEEE--------eccccccCccccccchhhc--cccchh-hH----HHHHHHHHHHHHH
Confidence            3333 22333334445677888875        66664331    1111110  111111 11    2222234555545


Q ss_pred             hhhccCCeEEEEecccC
Q 024331          206 EELVAEGRMVLTFLGRK  222 (269)
Q Consensus       206 ~EL~pGG~lv~~~~g~~  222 (269)
                      +=|+|||+||-++....
T Consensus       218 ~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         218 PHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             GGEEEEEEEEEEESCCC
T ss_pred             HhcCCCceEEEeeecCc
Confidence            56799999999998775

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=81.47  E-value=0.25  Score=39.07  Aligned_cols=34  Identities=15%  Similarity=-0.011  Sum_probs=25.8

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCC
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN  100 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~N  100 (269)
                      ..+|+|++||||..++..+        .+.        --+|++.|.-..
T Consensus        44 ~~~vLDlfaGsG~~gieal--------srG--------a~~v~~VE~~~~   77 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEAL--------SRY--------AAGATLIEMDRA   77 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHH--------HTT--------CSEEEEECSCHH
T ss_pred             hhhhhhhhccccceeeeEE--------ecC--------cceeEEEEEeec
Confidence            4689999999999988776        431        247888887654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.85  E-value=2.8  Score=35.62  Aligned_cols=128  Identities=15%  Similarity=0.048  Sum_probs=68.2

Q ss_pred             ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCchHHHHHhhHHHHHHHHHhcCCCCCCCCce
Q 024331           51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC  130 (269)
Q Consensus        51 ~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~  130 (269)
                      .-+|+|+-||.|.-|..++        +..      .....++.+|.-.+   .+.+..    ..++ +.|.     .++
T Consensus       117 g~~vlD~CAapGgKt~~l~--------~~~------~~~~~i~a~d~~~~---r~~~l~----~~~~-r~~~-----~~i  169 (313)
T d1ixka_         117 GEIVADMAAAPGGKTSYLA--------QLM------RNDGVIYAFDVDEN---RLRETR----LNLS-RLGV-----LNV  169 (313)
T ss_dssp             TCEEEECCSSCSHHHHHHH--------HHT------TTCSEEEEECSCHH---HHHHHH----HHHH-HHTC-----CSE
T ss_pred             cceeeecccchhhhhHhhh--------hhc------ccccceeeeccCHH---HHHHHH----HHHH-HHHh-----hcc
Confidence            4689999999999988776        432      24588999998654   222211    1111 2221     233


Q ss_pred             EEeecCCCccCCCCCCCceeeEeccccccccccCCCCCCC----CCcceEEcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 024331          131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES----NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE  206 (269)
Q Consensus       131 f~~~vpgSFy~~lfP~~Svd~~~Ss~alHWLS~~P~~l~~----nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~  206 (269)
                      -+.  -.++.........+|.|.-        ++|++-..    +++.-|  ..++ ...+.    ..+-=..+|..=++
T Consensus       170 ~~~--~~d~~~~~~~~~~fD~ILv--------DaPCSg~G~~~r~p~~~~--~~~~-~~~~~----l~~~Q~~iL~~a~~  232 (313)
T d1ixka_         170 ILF--HSSSLHIGELNVEFDKILL--------DAPCTGSGTIHKNPERKW--NRTM-DDIKF----CQGLQMRLLEKGLE  232 (313)
T ss_dssp             EEE--SSCGGGGGGGCCCEEEEEE--------ECCTTSTTTCC----------CCH-HHHHH----HHHHHHHHHHHHHH
T ss_pred             ccc--cccccccccccccccEEEE--------ccccccCCceeeccchhh--hhhh-hHHHH----HHHHHHHHHHhhhh
Confidence            222  1333333344567787754        66765442    111111  1111 11222    22222345665566


Q ss_pred             hhccCCeEEEEecccC
Q 024331          207 ELVAEGRMVLTFLGRK  222 (269)
Q Consensus       207 EL~pGG~lv~~~~g~~  222 (269)
                      =|+|||+||-++....
T Consensus       233 ~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         233 VLKPGGILVYSTCSLE  248 (313)
T ss_dssp             HEEEEEEEEEEESCCC
T ss_pred             eeCCCcEEEEeeccCC
Confidence            7789999999998775

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=80.74  E-value=1.3  Score=34.57  Aligned_cols=54  Identities=11%  Similarity=-0.037  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcceEEecCCCCCch
Q 024331           32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF  102 (269)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaD~GCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLP~NDF  102 (269)
                      +..++.+|+=+++.... ...+|+|+-||||.-++..+        .|        -.-+|++.|.-..=+
T Consensus        26 t~~~vrealFn~l~~~~-~~~~vLDlFaGsG~~glEal--------SR--------GA~~v~fVE~~~~a~   79 (183)
T d2ifta1          26 TGDRVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEAL--------SR--------QAKKVTFLELDKTVA   79 (183)
T ss_dssp             --CHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHH--------HT--------TCSEEEEECSCHHHH
T ss_pred             CcHHHHHHHHHHhhhhc-ccceEeecccCccceeeeee--------ee--------cceeeEEeecccchh
Confidence            33444455444432211 23699999999999988766        43        135889998766533