Citrus Sinensis ID: 024341

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNGLPPPPNPASGHDYA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEEEEEEccEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEccccccccEEEEccccEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccccccccccccEEEEEEEEEEEccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccccccccccccccccccccccEEEEEEEEEEEEEccEEEEcccccccccccEEEEEEEccccccHHHHEEEEEEEEccccccccEEEEcccEEEEEcccEEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEEEEEcccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
megeiepvdcasaskpprleipkvpddsekpiaikRLKDVEICVPIVYGTMAFHlgrkasesqshrWTVYVRGATNEDIGVVIKRVVFqlhpsfnnptrvvesppfelqecgwgeFEIAISLFFhsdvcdkpldlyhhlklypeaesgpkstkkpvvmesyneivfpepaegffarvlnhpavvvprlpagfvlptpvpidsvhgkgrgdtknhplshwFMNFSEADELLKIASARQQVQAHIIKLRRELnmmnglppppnpasghdya
Flexible Loop (DISEMBL)
megeiepvdcasaskpprleipkvpddsekpiaikrlkdveICVPIVYGTMAFHlgrkasesqshrWTVYVRGATNEDIGVVIKRVVFQLHPsfnnptrvvesppFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLypeaesgpkstkKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELnmmnglppppnpasghdya
Low Complexity Region (SEG)
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRElnmmnglppppnpASGHDYA
Disordered region (IsUnstruct)
*******************************IAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP************VVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGK******NHPLSHWFMNFSEADELLKIASARQQVQAHIIKLR**********************
Disordered Region (DISOPRED)
***************************************VEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFAR*****************************************************LKIASARQQVQAHI**************************
Disordered Region (DISEMBL)
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEA*********PVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNGLPPPPNPASGHDYA
Disordered Region (DISPRO)
*********************************IKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVV********************************HWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMN***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNGLPPPPNPASGHDYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q755P0	208	Protein AF-9 homolog OS=A	yes	no	0.579	0.75	0.447	7e-34
P53930	226	Protein AF-9 homolog OS=S	yes	no	0.724	0.862	0.345	2e-30
Q6CIV8	220	Protein AF-9 homolog OS=K	yes	no	0.579	0.709	0.405	7e-30
Q6FXM4	221	Protein AF-9 homolog OS=C	yes	no	0.565	0.687	0.366	1e-28
Q10319	217	Protein AF-9 homolog OS=S	yes	no	0.736	0.912	0.340	1e-27
Q5BC71	275	Protein AF-9 homolog OS=E	yes	no	0.527	0.516	0.430	8e-27
Q4WPM8	252	Protein AF-9 homolog OS=N	yes	no	0.550	0.587	0.385	1e-24
O95619	227	YEATS domain-containing p	yes	no	0.494	0.585	0.433	6e-24
Q9CR11	227	YEATS domain-containing p	yes	no	0.494	0.585	0.433	7e-24
Q7RZK7	309	Protein AF-9 homolog OS=N	N/A	no	0.520	0.453	0.374	2e-22

>sp|Q755P0|AF9_ASHGO Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +  PIVYG  A  +G      A    +H WT++VRG   EDI   IK+V
Sbjct: 3   PAQAKRIKTLSVARPIVYGNTAKKMGDVRPAIAPSEHTHMWTIFVRGPQGEDISYFIKKV 62

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP-EA 145
           VF+LH ++ NP RVV++PPFEL E GWGEFEI + + F  +  +K L+ YHHL+L+P   
Sbjct: 63  VFKLHETYPNPVRVVDAPPFELTETGWGEFEINVKVHFVDEANEKMLNFYHHLRLHPYTE 122

Query: 146 ESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVP 186
           E G +S    V    Y+EIVF EP E FFA+++  P  ++P
Sbjct: 123 EDGRRSDGDEVSSVFYDEIVFNEPNEAFFAKMIEQPGNLLP 163

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P53930|AF9_YEAST Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 42/237 (17%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+V
Sbjct: 3   PTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKV 62

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE 146
           VF+LH ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A 
Sbjct: 63  VFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYAN 122

Query: 147 SGPKS------------TKKPVVMESY-NEIVFPEPAEGFFARVLNHPAVVVPRLPAGFV 193
             P S            +K   V   Y +EIVF EP E FF  +++ P         G +
Sbjct: 123 PVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRP---------GNL 173

Query: 194 LPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRREL 250
           LP+    D V+ K                  E +E+ +I    ++V   I +L+++L
Sbjct: 174 LPSNKTDDCVYSKQL----------------EQEEIDRIEIGIEKVDKEIDELKQKL 214

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6CIV8|AF9_KLULA Protein AF-9 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YAF9 PE=3 SV=1

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 14/170 (8%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +  PI+YG  A  +G      A +  +H WT++VR    EDI   IK+V
Sbjct: 4   PPVTKRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKV 63

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLY---- 142
           VF+LH ++ NP RV+E+PPFEL E GWGEFEI I ++F     +K L+ YHHL+L+    
Sbjct: 64  VFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYIN 123

Query: 143 PEAESGPKSTKKPVVMES------YNEIVFPEPAEGFFARVLNHPAVVVP 186
           PE +   +S  +  V E       ++EIVF EP E FF  +++ P  + P
Sbjct: 124 PETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKPGNLFP 173

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FXM4|AF9_CANGA Protein AF-9 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YAF9 PE=3 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 17/169 (10%)

Query: 35  KRLKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRVVFQL 90
           KR+K + +   ++YG  A  +G      A    +H WT++VR  T +DI   IK+VVF+L
Sbjct: 7   KRIKTLSVSRAVIYGNTAKKIGENRPPNAPSEHTHLWTIFVRSPTGDDISYFIKKVVFKL 66

Query: 91  HPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP------- 143
           H ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K ++ YH L+L+P       
Sbjct: 67  HETYPNPVRTIEAPPFELTETGWGEFDINIKIYFVEESNEKFINFYHRLRLHPYVNVNPP 126

Query: 144 ------EAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVP 186
                 + E+G  +T   +    Y+EIVF EP E FF  +++ P  ++P
Sbjct: 127 MSTEVKKEETGNATTSDEISSIFYDEIVFNEPYEDFFKILVSKPGNLLP 175

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q10319|AF9_SCHPO Protein AF-9 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yaf9 PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 28/226 (12%)

Query: 36  RLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
           R+   +I  PI+ G  A  L +    KA    +H W ++V G   EDI   +++VVF+LH
Sbjct: 6   RVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFKLH 65

Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS 151
            ++NNPTR +ESPPFE+ E GWGEF+I + +FF  +  +K L  YHHLKL+P      + 
Sbjct: 66  DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPYGPRMEEM 125

Query: 152 TKKPVVMES--YNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRG 209
                ++ES  Y EIVF EP E                    + L +  PI   HG    
Sbjct: 126 KASGGLVESVQYEEIVFNEPFE------------------YTYKLLSQNPIGDGHGLAVE 167

Query: 210 DTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNG 255
              +HP S       E DE  K+  A Q+V+  I   ++++  + G
Sbjct: 168 SEPDHPFSQQL----EQDEADKLDFAIQEVKKTIEMYKQQVQSLQG 209

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5BC71|AF9_EMENI Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yaf9 PE=3 SV=1

 Score =  120 bits (302), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 9/151 (5%)

Query: 32  IAIKRLKDVEICVPIVYGTMA--FHLGRK---ASESQSHRWTVYVRGATNEDIGVVIKRV 86
              KR++ V I  P V+G+ A  F    K    S   +H+W VYVRG   EDI   IK+V
Sbjct: 5   TGTKRVRGVSIFRPFVFGSEAQPFDPATKPSNVSSDHTHQWRVYVRGVNGEDISYWIKKV 64

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLY---P 143
            F+LH ++    R VE PP+E+ E GWGEFEI I ++F  +  +KP  L+H LKL+   P
Sbjct: 65  QFKLHETYVQNVRTVEHPPYEVTETGWGEFEIQIKIYFVPESMEKPQTLWHSLKLHPYGP 124

Query: 144 EAESGPKSTKKPVVMESYNEIVFPEPAEGFF 174
           +AE G K  ++ VV ++Y E+VF EP E F+
Sbjct: 125 DAE-GKKERREVVVSQNYEEVVFNEPVEQFY 154

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4WPM8|AF9_ASPFU Protein AF-9 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yaf9 PE=3 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 13/161 (8%)

Query: 32  IAIKRLKDVEICVPIVYGTMA--FHLGRK---ASESQSHRWTVYVRGATNEDIGVVIKRV 86
              KR++ V I  P V+G+ A  F   +K        +H+W V+V+G  +EDI   +K+V
Sbjct: 5   TGTKRVRGVSIFRPFVFGSEARPFDPEKKPPHVPADHTHQWRVFVKGVNDEDISYWLKKV 64

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE 146
            F+LH ++    R +E PPFE+ E GWGEFEI I L+F  +  +KP  L+H LKL+P   
Sbjct: 65  QFKLHETYAQNVRTIEQPPFEVTETGWGEFEIQIKLYFVPESGEKPQTLWHSLKLHP--- 121

Query: 147 SGP-----KSTKKPVVMESYNEIVFPEPAEGFFARVLNHPA 182
            GP     K  ++ V+ ++Y EIVF EP E F+  +   P 
Sbjct: 122 FGPGAEVKKERREVVISQNYEEIVFNEPMEPFYDLLTGGPT 162

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|O95619|YETS4_HUMAN YEATS domain-containing protein 4 OS=Homo sapiens GN=YEATS4 PE=1 SV=1

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 36  RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
           R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct: 15  RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query: 95  NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
            NP RVV  PP+E+ E GWGE    I   F  D  ++P+ LYH LKL+ ++++     KK
Sbjct: 75  GNPLRVVTKPPYEITETGWGE-FEIIIKIFFIDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query: 155 PVVMESYNEIVFPEPA 170
            VV E Y+E++F +P 
Sbjct: 133 TVVSEFYDEMIFQDPT 148

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q9CR11|YETS4_MOUSE YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 36  RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
           R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct: 15  RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query: 95  NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
            NP RVV  PP+E+ E GWGE    I   F  D  ++P+ LYH LKL+ ++++     KK
Sbjct: 75  GNPLRVVTKPPYEITETGWGE-FEIIIKIFFIDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query: 155 PVVMESYNEIVFPEPA 170
            VV E Y+E++F +P 
Sbjct: 133 TVVSEFYDEMIFQDPT 148

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage.

Mus musculus (taxid: 10090)

>sp|Q7RZK7|AF9_NEUCR Protein AF-9 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=yaf-9 PE=3 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 15/155 (9%)

Query: 35  KRLKDVEICVPIVYGTMAFHLGRKAS-------ESQSHRWTVYVRGATNEDIGVVIKRVV 87
           KR+K V+I  P VYGT A     K +       +  +H WTV+++G  + DI   ++RV 
Sbjct: 7   KRVKGVQIFRPFVYGTTARPFDEKTNPKPPGIPDDHTHSWTVFIKGIDDVDITYWLRRVQ 66

Query: 88  FQLHPSFNNPTRVVES---PPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP- 143
           F+LH S  N  R+VE     PF++ E GWGEFEI + L++  +  +KP  LYHHL+L+P 
Sbjct: 67  FKLHESIPNHVRMVEGVKGQPFQIHETGWGEFEITMKLYYVPESSEKPQTLYHHLRLHPF 126

Query: 144 ----EAESGPKSTKKPVVMESYNEIVFPEPAEGFF 174
               E +   +     V+   Y E +F EP E F+
Sbjct: 127 GRTEEEKEAMRLNGGEVISWVYEEQIFNEPYEPFY 161

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
356496649	279	PREDICTED: protein AF-9 homolog [Glycine	0.988	0.953	0.759	1e-116
356538281	279	PREDICTED: protein AF-9 homolog [Glycine	0.988	0.953	0.751	1e-114
255638225	279	unknown [Glycine max]	0.988	0.953	0.748	1e-113
357483751	275	AF-9-like protein [Medicago truncatula]	0.947	0.927	0.745	1e-111
449434170	277	PREDICTED: protein AF-9 homolog [Cucumis	0.959	0.931	0.728	1e-111
255579819	270	YEATS domain-containing protein, putativ	0.970	0.966	0.732	1e-110
388491256	275	unknown [Medicago truncatula]	0.947	0.927	0.737	1e-110
388516831	282	unknown [Lotus japonicus]	0.970	0.925	0.739	1e-109
359476582	273	PREDICTED: protein AF-9 homolog [Vitis v	0.940	0.926	0.747	1e-108
224097160	280	predicted protein [Populus trichocarpa]	0.970	0.932	0.708	1e-105

>gi|356496649|ref|XP_003517178.1| PREDICTED: protein AF-9 homolog [Glycine max]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/266 (75%), Positives = 233/266 (87%)

Query: 2   EGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASE 61
           +GE    D ASA K  RL+I    +DS+K  A +RLKDVEICVPIVYGT+AF+LGRKASE
Sbjct: 12  QGEQSSDDGASAIKLSRLKIAIPSEDSDKKNANRRLKDVEICVPIVYGTIAFYLGRKASE 71

Query: 62  SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAIS 121
           SQSH+WTVYVRGA+NED+GVV+KRVVFQLHPSFNNPTRVVESPPFEL ECGWGEFEIAI+
Sbjct: 72  SQSHKWTVYVRGASNEDLGVVVKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAIT 131

Query: 122 LFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
           L+FH DVC+K LDLYHHLKLYPE ESGP+STKKPVV+ESYNEIVFPEP+EGF ARV NHP
Sbjct: 132 LYFHPDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESYNEIVFPEPSEGFLARVQNHP 191

Query: 182 AVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQA 241
           AV VPRLPAG  LP+PVPID+V+ K RGDTK+HPL+ WFMNFSEADELLK+A+ARQQVQA
Sbjct: 192 AVNVPRLPAGLNLPSPVPIDTVNDKERGDTKDHPLTQWFMNFSEADELLKLAAARQQVQA 251

Query: 242 HIIKLRRELNMMNGLPPPPNPASGHD 267
           HI+KLRR+L+++ GLP    P SG++
Sbjct: 252 HIVKLRRQLSLVEGLPQLSKPPSGYE 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538281|ref|XP_003537632.1| PREDICTED: protein AF-9 homolog [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/266 (75%), Positives = 232/266 (87%)

Query: 2   EGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASE 61
           +GE    D ASA KP RL+I    +DS+K  A +RLKDVEICVPIVYGT+AF+LGRKASE
Sbjct: 12  QGEQSSDDGASAIKPSRLKIAIPSEDSDKKNANRRLKDVEICVPIVYGTIAFYLGRKASE 71

Query: 62  SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAIS 121
           SQSH+WTVYVRGA+NED+GVV+KRVVFQLHPSFNNPTRVVESPPFEL ECGWGEFEIAI+
Sbjct: 72  SQSHKWTVYVRGASNEDLGVVVKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAIT 131

Query: 122 LFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
           L+FHSDVC+K LDLYHHLKLYPE ESGP+STKKPVV+ESYNEIVFPEP+E F ARV NHP
Sbjct: 132 LYFHSDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESYNEIVFPEPSEVFLARVQNHP 191

Query: 182 AVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQA 241
           AV VPRLPAG  LP+PVP D+V+ K RGDTK+H L+ WF+NFSEADELLK+A+ARQQVQA
Sbjct: 192 AVNVPRLPAGLNLPSPVPSDTVNDKERGDTKDHLLTQWFLNFSEADELLKLAAARQQVQA 251

Query: 242 HIIKLRRELNMMNGLPPPPNPASGHD 267
           HI+KLRR+L+++ GLP    P SG++
Sbjct: 252 HIVKLRRQLSLVEGLPQLSKPPSGYE 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638225|gb|ACU19426.1| unknown [Glycine max]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/266 (74%), Positives = 231/266 (86%)

Query: 2   EGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASE 61
           +GE    D ASA KP RL+I    +DS+K  A +RLKDVEICVPIVYGT+AF+LGRKASE
Sbjct: 12  QGEQSSDDGASAIKPSRLKIAIPSEDSDKKNANRRLKDVEICVPIVYGTIAFYLGRKASE 71

Query: 62  SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAIS 121
           SQSH+WTVYVRGA+NED+GVV+KRVVFQLHPSFNNPTRVVESPPFEL ECGWGEFEIAI+
Sbjct: 72  SQSHKWTVYVRGASNEDLGVVVKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAIT 131

Query: 122 LFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
           L+FHSDVC+K LDLYHHLKLYPE ESGP+STKKPVV+ESYNEIVFPEP+E F ARV NHP
Sbjct: 132 LYFHSDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESYNEIVFPEPSEVFLARVQNHP 191

Query: 182 AVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQA 241
           AV VPRLPAG  LP+PVP D+V+ K RGD K+H L+ WF+NFSEADELLK+A+ARQQVQA
Sbjct: 192 AVNVPRLPAGLNLPSPVPSDTVNDKERGDPKDHLLTQWFLNFSEADELLKLAAARQQVQA 251

Query: 242 HIIKLRRELNMMNGLPPPPNPASGHD 267
           HI+KLRR+L+++ GLP    P SG++
Sbjct: 252 HIVKLRRQLSLVEGLPQLSKPPSGYE 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483751|ref|XP_003612162.1| AF-9-like protein [Medicago truncatula] gi|355513497|gb|AES95120.1| AF-9-like protein [Medicago truncatula]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/255 (74%), Positives = 223/255 (87%)

Query: 9   DCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWT 68
           D +S  KP RL+I    +DS+K I IKR+KDVEICVPIVYGT+AF LGRKASESQSH+WT
Sbjct: 20  DDSSDIKPSRLKISLPSEDSDKKILIKRVKDVEICVPIVYGTIAFFLGRKASESQSHKWT 79

Query: 69  VYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDV 128
           VYVRGA+NED+  V+KRVVFQLHPSFNNPTRVVESPPFE+ ECGWGEFEIAI+LFFHSD 
Sbjct: 80  VYVRGASNEDLSAVVKRVVFQLHPSFNNPTRVVESPPFEISECGWGEFEIAITLFFHSDA 139

Query: 129 CDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRL 188
           C+K LDLYHHLKLYPE ESGP++TK+PVV+ESYNE+VFPEP+E F ARV NHPAVVVPRL
Sbjct: 140 CEKQLDLYHHLKLYPEDESGPQNTKRPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPRL 199

Query: 189 PAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRR 248
           P G  LP+PVP++ ++ K RGDTK+HPL+HWF+NFSEADELLK+A+ARQQVQAHI+KLRR
Sbjct: 200 PDGLNLPSPVPVEPMNDKERGDTKDHPLNHWFLNFSEADELLKLAAARQQVQAHIVKLRR 259

Query: 249 ELNMMNGLPPPPNPA 263
           +L +M GLP    P+
Sbjct: 260 QLTLMEGLPQSKQPS 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434170|ref|XP_004134869.1| PREDICTED: protein AF-9 homolog [Cucumis sativus] gi|449525890|ref|XP_004169949.1| PREDICTED: protein AF-9 homolog [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/258 (72%), Positives = 227/258 (87%)

Query: 12  SASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYV 71
           S +KPPR++I K  + S+   A ++LKD+EICVPIV GT+AF+LGRKASESQSH+WTVYV
Sbjct: 19  SGNKPPRIKISKSSEGSDAKNASRKLKDMEICVPIVCGTIAFYLGRKASESQSHKWTVYV 78

Query: 72  RGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDK 131
           RGATNED+GVVIKRVVFQLHPSFNNPTRV+ESPPFEL E GWGEFEIAI+LFFHSDVCDK
Sbjct: 79  RGATNEDLGVVIKRVVFQLHPSFNNPTRVIESPPFELSESGWGEFEIAITLFFHSDVCDK 138

Query: 132 PLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAG 191
            LDL+HHLKLYPE ESGP++TKKPVV+ESYNEIVFP+P+E FF+RV NHPAVVVPRLPAG
Sbjct: 139 QLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHPAVVVPRLPAG 198

Query: 192 FVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELN 251
           F LP P  I+++  + +GDTK+H LS WF+NFSEADELLK+A+ARQQVQAHI+KLRR+L+
Sbjct: 199 FNLPNPASIENMAEREKGDTKDHSLSQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS 258

Query: 252 MMNGLPPPPNPASGHDYA 269
           +M+GLP    P +G+++ 
Sbjct: 259 VMDGLPQFSKPTAGYEFT 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579819|ref|XP_002530747.1| YEATS domain-containing protein, putative [Ricinus communis] gi|223529711|gb|EEF31653.1| YEATS domain-containing protein, putative [Ricinus communis]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 231/265 (87%), Gaps = 4/265 (1%)

Query: 4   EIEPVDCASASKPPRLEIPKVPDDSE-KPIAIKRLKDVEICVPIVYGTMAFHLGRKASES 62
           E +P D  SA+KP R++  K  ++S+   +A  R+KDVEI VP+VYGT+AF+LGRKASE+
Sbjct: 8   ESQPEDGGSAAKPQRIKFGKPTENSDTNKVANMRIKDVEISVPVVYGTIAFYLGRKASET 67

Query: 63  QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISL 122
           QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF+NPTRVVESPPFEL ECGWGEFEIAI+L
Sbjct: 68  QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFSNPTRVVESPPFELSECGWGEFEIAITL 127

Query: 123 FFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPA 182
           +FHSDVC++ LDLYH LKLYPE E+GP+STKKPVV+ESYNEIVFP+P+E F ARV NHPA
Sbjct: 128 YFHSDVCNEQLDLYHQLKLYPEDETGPQSTKKPVVVESYNEIVFPDPSENFLARVQNHPA 187

Query: 183 VVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAH 242
           V+VPRLPAGF LPTP+ I +   + RGDTK+HPL HWF+NFSEADELLK+A+ARQQVQAH
Sbjct: 188 VIVPRLPAGFNLPTPMEIVN---EKRGDTKDHPLYHWFLNFSEADELLKLAAARQQVQAH 244

Query: 243 IIKLRRELNMMNGLPPPPNPASGHD 267
           I+KLRR+LN+++GLP PP  AS +D
Sbjct: 245 IVKLRRQLNVIDGLPQPPITASTYD 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491256|gb|AFK33694.1| unknown [Medicago truncatula]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/255 (73%), Positives = 221/255 (86%)

Query: 9   DCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWT 68
           D +S  KP RL+I    +DS+K I IKR+KDV ICVPIVYGT+AF LGRKASESQSH+WT
Sbjct: 20  DDSSDIKPSRLKISLPSEDSDKKILIKRVKDVGICVPIVYGTIAFFLGRKASESQSHKWT 79

Query: 69  VYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDV 128
           VYVRGA+NED+  V+KRVVFQLHPSFNNPTRVVESPPFE+ ECGWGEFEIAI+LFFHSD 
Sbjct: 80  VYVRGASNEDLSAVVKRVVFQLHPSFNNPTRVVESPPFEISECGWGEFEIAITLFFHSDA 139

Query: 129 CDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRL 188
           C+K LDLYHHLKLYPE ESGP++TK+PVV+ESYNE+VFPEP+E F ARV NHPAVVVPRL
Sbjct: 140 CEKQLDLYHHLKLYPEDESGPQNTKRPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPRL 199

Query: 189 PAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRR 248
           P G  LP+PVP++ ++ K RGDTK+HPL+HWF+NFSEADELLK+A+ARQQVQAHI+KL R
Sbjct: 200 PDGLNLPSPVPVEPMNDKERGDTKDHPLNHWFLNFSEADELLKLAAARQQVQAHIVKLGR 259

Query: 249 ELNMMNGLPPPPNPA 263
           +L +M GLP    P+
Sbjct: 260 QLTLMEGLPQSKQPS 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516831|gb|AFK46477.1| unknown [Lotus japonicus]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/261 (73%), Positives = 223/261 (85%)

Query: 9   DCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWT 68
           D  SA KP RL+I    ++S+K    KRLKDVEI VPIVYGT+AF+LGRKASESQSH+WT
Sbjct: 22  DAPSAIKPSRLKIAVPSEESDKKNVNKRLKDVEISVPIVYGTIAFYLGRKASESQSHKWT 81

Query: 69  VYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDV 128
           VYVRGA+NED+GVV+K+VVFQLHPSFNNPTRVVESPPF++ ECGWGEFEIAISLFFHSDV
Sbjct: 82  VYVRGASNEDLGVVVKKVVFQLHPSFNNPTRVVESPPFQVSECGWGEFEIAISLFFHSDV 141

Query: 129 CDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRL 188
           C+K LDLYHHLKLYPE ESGP++TKKPVV+E+YNEIVFPEP+E F ARVLNHPAVVVP+L
Sbjct: 142 CEKQLDLYHHLKLYPEDESGPQNTKKPVVVETYNEIVFPEPSEVFLARVLNHPAVVVPKL 201

Query: 189 PAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRR 248
           P G  LP+PV +DSV+ K RGDTK+HPLS WF+NFSE DEL K A+ARQQVQAHI KLRR
Sbjct: 202 PVGLNLPSPVAVDSVNDKERGDTKDHPLSQWFLNFSETDELSKPAAARQQVQAHIGKLRR 261

Query: 249 ELNMMNGLPPPPNPASGHDYA 269
           +L++M G P    P SG D+ 
Sbjct: 262 QLSLMEGPPQQAKPPSGFDHT 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476582|ref|XP_002269156.2| PREDICTED: protein AF-9 homolog [Vitis vinifera] gi|297735026|emb|CBI17388.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/253 (74%), Positives = 220/253 (86%)

Query: 12  SASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYV 71
           SA K  RL + +  DD EK I  +RLKDVEICVPI YGT++F LGRKASESQSH+WTVYV
Sbjct: 19  SAIKLQRLVMGRSTDDPEKKIPNRRLKDVEICVPISYGTISFWLGRKASESQSHKWTVYV 78

Query: 72  RGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDK 131
           RGATNED+GVVI+R VFQLHPSFNNP RVV+SPPFEL E GWGEFEIAI+L+FHSDVCDK
Sbjct: 79  RGATNEDLGVVIRRAVFQLHPSFNNPMRVVDSPPFELSESGWGEFEIAITLYFHSDVCDK 138

Query: 132 PLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAG 191
            LDL+HHLKLYPE ESGP+STKKPVV+ESYNEIVFP+P + FFARV +HPAV+VPRLPA 
Sbjct: 139 QLDLFHHLKLYPEDESGPQSTKKPVVVESYNEIVFPDPLDSFFARVKDHPAVIVPRLPAS 198

Query: 192 FVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELN 251
           F LP PVPI++   K RGDTK+HPL+ WF+NFSEADELLK+A+ARQQVQAHI+KLRR+L+
Sbjct: 199 FNLPAPVPIENAKEKKRGDTKDHPLNQWFVNFSEADELLKLATARQQVQAHIVKLRRQLS 258

Query: 252 MMNGLPPPPNPAS 264
           +++GLP P  PAS
Sbjct: 259 VIDGLPRPLKPAS 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097160|ref|XP_002310857.1| predicted protein [Populus trichocarpa] gi|222853760|gb|EEE91307.1| predicted protein [Populus trichocarpa]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/261 (70%), Positives = 220/261 (84%)

Query: 5   IEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQS 64
           I+  D  SA+KP R++     D++      KRLKDVEI VP+VYGTMAF+LG+KA+E QS
Sbjct: 14  IQLEDVESAAKPQRIKPTDYTDNNINQDENKRLKDVEISVPVVYGTMAFYLGKKANELQS 73

Query: 65  HRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
           H+WTVYVRGATNED+GVVIK+VVFQLHPSF+NP RVVESPPFEL ECGWGEFEI IS+ F
Sbjct: 74  HKWTVYVRGATNEDLGVVIKQVVFQLHPSFDNPIRVVESPPFELSECGWGEFEICISILF 133

Query: 125 HSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVV 184
           H DVCDK +DL+H LKLYP+AESGP+STKKPVV+E+YNEIVFP+P+E F ARVLNHPAV 
Sbjct: 134 HDDVCDKHVDLFHLLKLYPDAESGPQSTKKPVVVETYNEIVFPDPSENFLARVLNHPAVY 193

Query: 185 VPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHII 244
           VPRLPAGF LP PVP  +++ KG+ DTKNHPL+HWF+NFSEADELLK+ASARQQVQ HI+
Sbjct: 194 VPRLPAGFNLPAPVPSPNMNVKGKDDTKNHPLNHWFINFSEADELLKLASARQQVQDHIL 253

Query: 245 KLRRELNMMNGLPPPPNPASG 265
           KLRR+L+M++G P P   A G
Sbjct: 254 KLRRQLSMLDGPPQPSKLAYG 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2157156	268	GAS41 "GLIOMAS 41" [Arabidopsi	0.884	0.888	0.661	4.9e-85
UNIPROTKB|Q32LE1	227	YEATS4 "Uncharacterized protei	0.490	0.581	0.466	7.9e-30
UNIPROTKB|E2QSI2	227	YEATS4 "Uncharacterized protei	0.490	0.581	0.466	7.9e-30
UNIPROTKB|O95619	227	YEATS4 "YEATS domain-containin	0.490	0.581	0.466	7.9e-30
MGI|MGI:1927224	227	Yeats4 "YEATS domain containin	0.490	0.581	0.466	7.9e-30
RGD|1305741	227	Yeats4 "YEATS domain containin	0.490	0.581	0.466	7.9e-30
UNIPROTKB|Q8UVS4	227	GAS41 "GAS41" [Gallus gallus (	0.490	0.581	0.459	1.6e-29
SGD|S000005051	226	YAF9 "Subunit of NuA4 histone	0.579	0.690	0.398	4.4e-29
ZFIN|ZDB-GENE-040718-252	226	yeats4 "YEATS domain containin	0.520	0.619	0.441	5.6e-29
POMBASE|SPAC17G8.07	217	yaf9 "YEATS family histone ace	0.542	0.672	0.401	7.6e-29

TAIR|locus:2157156 GAS41 "GLIOMAS 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 160/242 (66%), Positives = 192/242 (79%)

Query:     9 DCASASKPPRLEIP-KVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRW 67
             D    S+P    +  K+    EK    K+LKD+EI VPIVYG +AF LG+KASE QSH+W
Sbjct:    13 DQPETSEPTLKSLKTKMTKSDEKQ---KKLKDIEISVPIVYGNVAFWLGKKASEYQSHKW 69

Query:    68 TVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSD 127
              VYVRGATNEDI VV+K+VVFQLH SFN+PTRV+E PPFE+ E GWGEFEIA++L FHSD
Sbjct:    70 AVYVRGATNEDISVVVKKVVFQLHSSFNSPTRVIEEPPFEVSESGWGEFEIAMTLHFHSD 129

Query:   128 VCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPR 187
             VCDKPL LYHHLKLYPE ESGP + KKPVV+ESY+EIVFP+P+E F ARV NHPA+  PR
Sbjct:   130 VCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESFLARVQNHPALTFPR 189

Query:   188 LPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLR 247
             LP+G+ LP P+ ++    K RGDTK+H L  WFM+FSEADELL++A+ARQQVQAHI KLR
Sbjct:   190 LPSGYNLPAPMQVEDTGKKKRGDTKDHSLGQWFMSFSEADELLQLAAARQQVQAHIAKLR 249

Query:   248 RE 249
             R+
Sbjct:   250 RQ 251

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0090239 "regulation of histone H4 acetylation" evidence=IMP

UNIPROTKB|Q32LE1 YEATS4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2QSI2 YEATS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O95619 YEATS4 "YEATS domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0007067 "mitosis" evidence=NAS

GO:0016363 "nuclear matrix" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=NAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1927224 Yeats4 "YEATS domain containing 4" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

RGD|1305741 Yeats4 "YEATS domain containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA;ISO

GO:0043967 "histone H4 acetylation" evidence=IEA;ISO

GO:0043968 "histone H2A acetylation" evidence=IEA;ISO

UNIPROTKB|Q8UVS4 GAS41 "GAS41" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 62/135 (45%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  P+VYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPVVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAILGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

SGD|S000005051 YAF9 "Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 69/173 (39%), Positives = 99/173 (57%)

Query:    31 PIAIKRLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRV 86
             P   KR+K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+V
Sbjct:     3 PTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKV 62

Query:    87 VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE 146
             VF+LH ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A 
Sbjct:    63 VFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYAN 122

Query:   147 SGPKS-----------TKKPVVMES--YNEIVFPEPAEGFFARVLNHPAVVVP 186
               P S             K   + S  ++EIVF EP E FF  +++ P  ++P
Sbjct:   123 PVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLP 175

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IGI;IDA;IPI

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0000812 "Swr1 complex" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0043486 "histone exchange" evidence=IMP

GO:0006281 "DNA repair" evidence=IEA;IDA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IPI

GO:0006348 "chromatin silencing at telomere" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040718-252 yeats4 "YEATS domain containing 4" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 64/145 (44%), Positives = 92/145 (63%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIV+G +A + G+K  +   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVFGNVARYFGKKREDDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+    S     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSDSSA--MPKK 131

Query:   155 PVVMESYNEIVFPEPAEGFFARVLN 179
              VV E Y+E++F +P      ++LN
Sbjct:   132 TVVSEFYDEMIFQDPT-AMMQQLLN 155

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

POMBASE|SPAC17G8.07 yaf9 "YEATS family histone acetyltransferase subunit Yaf9" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 294 (108.6 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 61/152 (40%), Positives = 88/152 (57%)

Query:    36 RLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
             R+   +I  PI+ G  A  L +    KA    +H W ++V G   EDI   +++VVF+LH
Sbjct:     6 RVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFKLH 65

Query:    92 PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS 151
              ++NNPTR +ESPPFE+ E GWGEF+I + +FF  +  +K L  YHHLKL+P      + 
Sbjct:    66 DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPYGPRMEEM 125

Query:   152 TKKPVVMES--YNEIVFPEPAEGFFARVLNHP 181
                  ++ES  Y EIVF EP E  +  +  +P
Sbjct:   126 KASGGLVESVQYEEIVFNEPFEYTYKLLSQNP 157

GO:0000812 "Swr1 complex" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=ISO

GO:0006342 "chromatin silencing" evidence=ISO

GO:0016573 "histone acetylation" evidence=IC

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0043486 "histone exchange" evidence=ISO

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam03366	84	pfam03366, YEATS, YEATS family	7e-37
COG5033	225	COG5033, TFG3, Transcription initiation factor IIF	3e-27

>gnl|CDD|190614 pfam03366, YEATS, YEATS family

 Score =  125 bits (316), Expect = 7e-37
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 64  SHRWTVYVRGATNE-DIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISL 122
           +H+WTV+VRG  NE D+   IK+V F+LH SF NP R V  PPFE+ E GWGEFEI I +
Sbjct: 1   THKWTVFVRGLDNEGDLSYFIKKVTFKLHESFPNPVRTVTKPPFEVTETGWGEFEIPIKI 60

Query: 123 FFHSDVCDKPLDLYHHLKLYPEA 145
           +F  D  +KP+ + H LKL+PE 
Sbjct: 61  YFV-DSNEKPVTIQHDLKLHPEG 82

We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity. Length = 84

>gnl|CDD|227366 COG5033, TFG3, Transcription initiation factor IIF, auxiliary subunit [Transcription]

 Score =  104 bits (262), Expect = 3e-27
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 34  IKRLKDVEICVPIVYGTMAFHLG--RKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
           +KR + ++    I+ G  A  LG   +     +H W V+VR    EDI  ++K+V+F+LH
Sbjct: 4   VKRTERLKTQRVIIPGE-AKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLH 62

Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGP-- 149
           P+F+NPTR +ESPPFE++E GWGEF+I I +FF     +K +  Y H    P A   P  
Sbjct: 63  PTFSNPTRTIESPPFEIKETGWGEFDIQIKIFFAEKAGEKTIHFYLHFGDEPYAVDEPVD 122

Query: 150 -----------KSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
                       S    V      E  F EP       +    
Sbjct: 123 IPVNRPDLTSELSKSGEVESVYKREKRFNEPNIQALKLLNGAK 165

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG3149	249	consensus Transcription initiation factor IIF, aux	100.0
COG5033	225	TFG3 Transcription initiation factor IIF, auxiliar	100.0
PF03366	84	YEATS: YEATS family; InterPro: IPR005033 Named the	100.0

>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=100.00  E-value=3.8e-43  Score=320.29  Aligned_cols=228  Identities=37%  Similarity=0.566  Sum_probs=188.3

Q ss_pred             ccceeeceEEEEEEEEccceEEcCCCCCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCcceeecCCcEEEEee
Q 024341           33 AIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECG  112 (269)
Q Consensus        33 ~~kR~k~~~I~~pIvyGn~A~~l~kk~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G  112 (269)
                      +.+|++.++|+++|+|||.|++++++.++.+||.|+|||||.++||++.||+||+|+||+||+||+|+|++|||+|+|+|
T Consensus         5 ~~~~~~~~~~~~~iv~G~~a~~~~~~~~~~~th~w~v~v~~~~~ed~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~EtG   84 (249)
T KOG3149|consen    5 SIKRTKECTISVPIVPGNRAAILGKRLPDGFTHIWEVYVRGPGKEDISAFVDKVVFKLHESFPNPRRVVESPPFEITETG   84 (249)
T ss_pred             CcceeeeeeEEeeeecCccccccCCCCCcccceeeEEEecCcCccccceeeeeeeeecccccccccccccCCCceEEeec
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEEEEeeCCCCCCeEEEEeeecCCCCCC---C-----------CCCCCCCeeEEeee-EEEecCCCHHHHHHH
Q 024341          113 WGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAES---G-----------PKSTKKPVVMESYN-EIVFPEPAEGFFARV  177 (269)
Q Consensus       113 WGEF~I~IkI~F~~d~~ekp~~l~H~L~L~p~~~~---~-----------~~~~~~pvv~e~yd-eIvF~nPse~f~~~L  177 (269)
                      ||+|+|.|+|||.++.++++++++|+|.|++++..   .           ....+.+++++.|+ +++|++|+++++..+
T Consensus        85 wgeF~i~i~i~f~d~~~~~~v~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~r~~v~~~~~~~e~~f~~~~~~~~~~~  164 (249)
T KOG3149|consen   85 WGEFEIQIEIFFTDDANEKKVTLYHDLKLHSYGAPPVPHEESTKKTFVNPTISLRIPVVREGVDVEIVFPDPTESTSIEA  164 (249)
T ss_pred             cccceEEEEEEeccCCCCceeeeeeeEEeeccCCCCccchhhhcccccccchhcccccccccccceeecCCCCccccccc
Confidence            99999999999999999999999999999987431   1           12346799999999 999999999999999


Q ss_pred             hcCCCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 024341          178 LNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNGLP  257 (269)
Q Consensus       178 ~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~f~~~~E~~El~~l~~a~~~V~~~i~~lk~~l~~~e~~~  257 (269)
                      ...+..+....+....+.............+.++++.-...++-...|..+.++++.+.+.++.++.++++++..++++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (249)
T KOG3149|consen  165 SSRPVGPGSNLAAVTDLKQVKSKTLPSLLSKESSKDVKTEKSSERPNEIDEVDRLEKKIKELKKEINKVRKDIEKLEGEI  244 (249)
T ss_pred             CCCCCcCCccccccccccccccccCcccccccccccccccccccccccchhhhhhhhhhhhhhhHHHHHHHhhhhccccc
Confidence            98876543333222222211111111122233344444455666777999999999999999999999999999999886


Q ss_pred             CCC
Q 024341          258 PPP  260 (269)
Q Consensus       258 ~~~  260 (269)
                      .-.
T Consensus       245 ~~~  247 (249)
T KOG3149|consen  245 DLQ  247 (249)
T ss_pred             ccc
Confidence            544

>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=100.00  E-value=1.7e-38  Score=282.50  Aligned_cols=200  Identities=30%  Similarity=0.490  Sum_probs=166.7

Q ss_pred             cceeeceEEEEEEEEccceEEcCCC--CCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCcceeecCCcEEEEe
Q 024341           34 IKRLKDVEICVPIVYGTMAFHLGRK--ASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQEC  111 (269)
Q Consensus        34 ~kR~k~~~I~~pIvyGn~A~~l~kk--~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~  111 (269)
                      .+|+.++.++++|++| .|..++..  .+-.+||-|.||||++++||+++||+||+|+|||||+||+|++++|||+|.|+
T Consensus         4 ~krt~r~~t~r~Iipg-ea~~~~~e~~~P~r~th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~Et   82 (225)
T COG5033           4 VKRTERLKTQRVIIPG-EAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKET   82 (225)
T ss_pred             ceeeEeeeeeceeccC-ccccCCccccCCchhhEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEEec
Confidence            6899999999999999 99999864  77889999999999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEEEEeeCCCCCCeEEEEeeecCCCCCCCCC-------------CCCCCeeEEeeeEEEecCCCHHHHHHHh
Q 024341          112 GWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPK-------------STKKPVVMESYNEIVFPEPAEGFFARVL  178 (269)
Q Consensus       112 GWGEF~I~IkI~F~~d~~ekp~~l~H~L~L~p~~~~~~~-------------~~~~pvv~e~ydeIvF~nPse~f~~~L~  178 (269)
                      |||||+|.|+|||.+.++++.+..+|++.++++....+.             +..+.|-+.++++++|++|...++++|.
T Consensus        83 GWGEF~i~I~iff~~~age~~~~fyl~f~~~~Y~v~~~v~~~~~~~~l~~elsk~geve~~~~~~~~~nep~i~~~k~~~  162 (225)
T COG5033          83 GWGEFDIQIKIFFAEKAGEKTIHFYLHFGDEPYAVDEPVDIPVNRPDLTSELSKSGEVESVYKREKRFNEPNIQALKLLN  162 (225)
T ss_pred             ccccceEEEEEEEecCCCceEeehhhhcccccccccccccccccccchhhhhhhcCcccceeeeeecccCchhHHHHhhh
Confidence            999999999999999999988888888777777421111             2234566778999999999999999998


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 024341          179 NHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHWFMNFSEADELLKIASARQQVQAHIIKLRRELNMMNGL  256 (269)
Q Consensus       179 ~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~f~~~~E~~El~~l~~a~~~V~~~i~~lk~~l~~~e~~  256 (269)
                      ..+.      ..++.|+..          +  +.    ...|+.+.++++++++..+.+++...|+.++.....+.++
T Consensus       163 ~~~~------~~a~gl~~~----------~--ed----d~~~v~Ql~~d~~~~v~~~ie~~~~~id~y~~~~~~L~~~  218 (225)
T COG5033         163 GAKM------KLAIGLHKL----------R--ED----DLVFVVQLVQDPIMAVLNLIEKGEFKIDLYKLPSDLLHKL  218 (225)
T ss_pred             cCcc------cccccCccc----------c--cc----cceeeEecCcCHHHHHHhccccCceEeeehhCchhhhhhc
Confidence            8552      112223211          0  11    3678999999999999999999999999888776665543

>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein

Probab=100.00  E-value=1.2e-35  Score=231.23  Aligned_cols=82  Identities=55%  Similarity=1.053  Sum_probs=70.3

Q ss_pred             ceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCcceeecCCcEEEEeeEeeEEEEEEEEEeeCCCCCCeEEEEeeecCC
Q 024341           64 SHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP  143 (269)
Q Consensus        64 tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWGEF~I~IkI~F~~d~~ekp~~l~H~L~L~p  143 (269)
                      ||+|+||||+++++|++++|+||+|+|||||+||+|++++|||+|+|+|||||+|.|+|+|+++++++|+++.|+|+|++
T Consensus         1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GWGeF~i~I~i~f~~~~~~~~~~~~h~L~l~~   80 (84)
T PF03366_consen    1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGWGEFEIPIKIHFKDPSNEKPVTIQHDLKLHQ   80 (84)
T ss_dssp             -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEESS--EEEEEEECCCGGCTCEEEEEEE--SSS
T ss_pred             CcEEEEEEEeCCCCCccceEEEEEEECCCCCCCCceEecCCCCEEEEeEeccEEEEEEEEEeCCCCCCcEEEEEEEEcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999777899999999999987


Q ss_pred             CC
Q 024341          144 EA  145 (269)
Q Consensus       144 ~~  145 (269)
                      ++
T Consensus        81 ~~   82 (84)
T PF03366_consen   81 DG   82 (84)
T ss_dssp             CE
T ss_pred             CC
Confidence            54

All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3rls_A	175	Crystal Structure Of Yeast Af-9 Homolog Protein Yaf		3e-30
3fk3_A	164	Structure Of The Yeats Domain, Yaf9 Length = 164		1e-28
3qrl_A	140	Crystal Structure Of The Taf14 Yeats Domain Length		4e-07
2l7e_A	131	The Structure Of A Domain From Yeast Length = 131		5e-07

>pdb|3RLS|A Chain A, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9 Length = 175

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 17/169 (10%)
Query: 37  LKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHP 92
           +K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+VVF+LH 
Sbjct: 1   IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHD 60
Query: 93  SFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS- 151
           ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A   P S 
Sbjct: 61  TYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSD 120
Query: 152 -----------TKKPVVMESY-NEIVFPEPAEGFFARVLNHPAVVVPRL 188
                      +K   V   Y +EIVF EP E FF  +++ P  ++P L
Sbjct: 121 NGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSL 169

>pdb|3FK3|A Chain A, Structure Of The Yeats Domain, Yaf9 Length = 164

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 89/156 (57%), Gaps = 17/156 (10%)
Query: 36  RLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
           R+K + +  PI+YG  A   G      A    +H WT++VRG  NEDI   IK+VVF+LH
Sbjct: 3   RIKTLSVSRPIIYGNTAKKXGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLH 62
Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS 151
            ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A   P S
Sbjct: 63  DTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNS 122
Query: 152 ------------TKKPVVMESY-NEIVFPEPAEGFF 174
                       +K   V   Y +EIVF EP E FF
Sbjct: 123 DNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFF 158

>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain Length = 140

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 80  GVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
             +  +V++ LHP+F NP R    PPF ++E GWG F + IS+F 
Sbjct: 51  ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 95

>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast Length = 131

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 80  GVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
             +  +V++ LHP+F NP R    PPF ++E GWG F + IS+F 
Sbjct: 48  ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	4e-49
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	4e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A Length = 175

 Score =  159 bits (402), Expect = 4e-49
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 17/170 (10%)

Query: 37  LKDVEICVPIVYGTMAFHLG----RKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHP 92
           +K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+VVF+LH 
Sbjct: 1   IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHD 60

Query: 93  SFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS- 151
           ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A   P S 
Sbjct: 61  TYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSD 120

Query: 152 ------------TKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLP 189
                           V    ++EIVF EP E FF  +++ P  ++P L 
Sbjct: 121 NGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSLE 170

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A Length = 140

 Score =  124 bits (313), Expect = 4e-36
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 35  KRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGA---TNEDIGVVIKRVVFQLH 91
             +  V+  + I                   +W++ +        E    +  +V++ LH
Sbjct: 3   HMVATVKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLH 62

Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPL--DLYHHLKLYPEAESGP 149
           P+F NP R    PPF ++E GWG F + IS+F      ++ +  DL    + Y       
Sbjct: 63  PTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEKAGERKIPHDLNFLQESYEVEHVIQ 122

Query: 150 KSTKKPVVMESYNE 163
               KP++ E   +
Sbjct: 123 IPLNKPLLTEELAK 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 28/254 (11%), Positives = 79/254 (31%), Gaps = 63/254 (24%)

Query: 21  IPKVPDDSEKPI-----AIKRLKDVEICVPIVYGTMAFHLGR-K---ASES-QSHR---- 66
             K      +P      A+  L+  +  +  + G +    G  K   A +   S++    
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVL--IDG-VL---GSGKTWVALDVCLSYKVQCK 179

Query: 67  ------WTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAI 120
                 W       + E +  +++++++Q+ P++ + +    +    +        +  +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-----IQAEL 234

Query: 121 SLFFHS-----------DVCD----KPLDLYHHLKL------YPEAESGPKSTKKPVVME 159
                S           +V +       +L    K+          +    +T   + ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 160 SYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPVPIDSVHGKGRGDTKNHPLSHW 219
            ++  + P+  +    + L+        LP   +   P  +  +      ++    L+ W
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNPRRLSII-----AESIRDGLATW 344

Query: 220 -FMNFSEADELLKI 232
                   D+L  I
Sbjct: 345 DNWKHVNCDKLTTI 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	100.0
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	100.0

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A

Probab=100.00  E-value=5.9e-56  Score=384.63  Aligned_cols=150  Identities=43%  Similarity=0.845  Sum_probs=134.0

Q ss_pred             eeceEEEEEEEEccceEEcCCC----CCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCcceeecCCcEEEEee
Q 024341           37 LKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECG  112 (269)
Q Consensus        37 ~k~~~I~~pIvyGn~A~~l~kk----~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G  112 (269)
                      |||++|+|||||||+|++|+++    +++++||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus         1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G   80 (175)
T 3rls_A            1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG   80 (175)
T ss_dssp             CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred             CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence            6899999999999999999963    567899999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEEEEeeCCCCCCeEEEEeeecCCCCCCC-------C------CCCCCCeeEEeeeEEEecCCCHHHHHHHhc
Q 024341          113 WGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESG-------P------KSTKKPVVMESYNEIVFPEPAEGFFARVLN  179 (269)
Q Consensus       113 WGEF~I~IkI~F~~d~~ekp~~l~H~L~L~p~~~~~-------~------~~~~~pvv~e~ydeIvF~nPse~f~~~L~~  179 (269)
                      ||||+|.|+|||++++++|+++|+|+|+||+++.+.       .      ..+++||++|+||||||+||+|.||++|++
T Consensus        81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~  160 (175)
T 3rls_A           81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS  160 (175)
T ss_dssp             SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred             EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence            999999999999988899999999999999986441       1      124789999999999999999999999999


Q ss_pred             CCCccCC
Q 024341          180 HPAVVVP  186 (269)
Q Consensus       180 ~~~~~~~  186 (269)
                      +|++++|
T Consensus       161 ~p~~~lp  167 (175)
T 3rls_A          161 RPGNLLP  167 (175)
T ss_dssp             STTCCSC
T ss_pred             CCCccCC
Confidence            9987654

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A

Probab=100.00  E-value=1.5e-36  Score=254.84  Aligned_cols=127  Identities=24%  Similarity=0.481  Sum_probs=106.7

Q ss_pred             eEEEEEEEEccceEEcCCCC--CCCCceeEE--EEEeCCCCCCcc-cceeeEEEEeCCCCCCCcceeecCCcEEEEeeEe
Q 024341           40 VEICVPIVYGTMAFHLGRKA--SESQSHRWT--VYVRGATNEDIG-VVIKRVVFQLHPSFNNPTRVVESPPFELQECGWG  114 (269)
Q Consensus        40 ~~I~~pIvyGn~A~~l~kk~--~~~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWG  114 (269)
                      |.....|+.+..  .+++..  .+.++|+|+  |||||.+++|++ +||+||+|+|||||+||+|+|++|||+|+|+|||
T Consensus         8 vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWG   85 (140)
T 3qrl_A            8 VKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWG   85 (140)
T ss_dssp             EEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESS
T ss_pred             eEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEee
Confidence            334444444444  565543  335779999  899999999885 8999999999999999999999999999999999


Q ss_pred             eEEEEEEEEEeeCCCCCCeEEEEeeecCCCCCCCCCCCCCCeeEEeeeEEEecCCCHHHHHHHhcCCC
Q 024341          115 EFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPA  182 (269)
Q Consensus       115 EF~I~IkI~F~~d~~ekp~~l~H~L~L~p~~~~~~~~~~~pvv~e~ydeIvF~nPse~f~~~L~~~~~  182 (269)
                      ||+|.|+|||++++  ++++|.|+|+|+++.            ++.+++|+|+||++.|+++|+..++
T Consensus        86 eF~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp  139 (140)
T 3qrl_A           86 GFPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS  139 (140)
T ss_dssp             CCCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred             eEEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence            99999999999654  478999999998653            5678899999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00