Citrus Sinensis ID: 024345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTFW
Secondary Structure (PSIPRED)
cccHHHcccHHHHHHcccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEccccccccEEEEEEEcccHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccEEEEEccccccccHHHHHHcccccccccccccccccccccHHHHHHHccccEEEEcEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHccccccHHHHHccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEcHccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHccccEEEEEccHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEcccccEEEEccccccccHHHHHHHHccEEEEEHHEHHccc
Coil and Loop (DISEMBL)
MPLLRRLSSSLQQVVKFTNRsfkslkfpgepiessvsptlthgihvfhcpdeVGIVAKLSECIAsrggnilaadvfvpekknvfysrsefifdpikwpreqmdEDFFKLSKMFNAMRsvvrvpdidpkYKVAVLASKQEHCLVDFLygwqegklpvEITCVisnhdrgpnshVIRFLErhgipyhylcaKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNsslgginislsSFDATIEWISLLKFRRTFW
Flexible Loop (DISEMBL)
mpllrrlsssLQQVVKFTnrsfkslkfpgePIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSefifdpikwprEQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTFW
Low Complexity Region (SEG)
MPllrrlssslQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKenereeellelVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVlnsslgginislssFDATIEWISLLKFRRTFW
Disordered region (IsUnstruct)
***************************************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF*
Disordered Region (DISOPRED)
*******************************************IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTFW
Disordered Region (DISEMBL)
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTFW
Disordered Region (DISPRO)
***************************************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTFW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
O34990	300	Formyltetrahydrofolate de	yes	no	0.594	0.533	0.321	3e-18
Q55135	284	Formyltetrahydrofolate de	N/A	no	0.594	0.563	0.335	3e-17
P0A5T6	310	Formyltetrahydrofolate de	yes	no	0.598	0.519	0.307	2e-13
P0A5T7	310	Formyltetrahydrofolate de	yes	no	0.598	0.519	0.307	2e-13
P37051	280	Formyltetrahydrofolate de	N/A	no	0.557	0.535	0.269	2e-11
P0A441	280	Formyltetrahydrofolate de	yes	no	0.557	0.535	0.269	2e-11
P0A440	280	Formyltetrahydrofolate de	yes	no	0.557	0.535	0.269	2e-11
Q46339	286	Formyltetrahydrofolate de	N/A	no	0.605	0.569	0.289	6e-11
Q03432	278	Formyltetrahydrofolate de	yes	no	0.561	0.543	0.322	2e-10

>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain 168) GN=purU PE=3 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 14/174 (8%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
           CPD+ GIV+ +S  +   G NI+ ++ +  + +   F+ R EF    I+  +  +   F 
Sbjct: 26  CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
            +++ F+   S+    ++    +VA+  SK+ HCL + ++ WQ G L  EI  VISNH+ 
Sbjct: 86  SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142

Query: 168 GPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQV 216
                    +ER  IP+HY+ A ++   E E++ LEL++  + D +VLARYMQ+
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQI 191

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0

>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 13/173 (7%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ GIVA++++ I    GNI+ AD        +F +R E+  D  +  R ++   + +
Sbjct: 12  CPDQPGIVAQIAQFIYQNQGNIIHADQHTDFSSGLFLNRVEWQLDNFRLSRPELLSAWSQ 71

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           L++   A   +    D  P+  +A+  SKQ+HCL+D L+ W+ G+L  EI  +ISNH   
Sbjct: 72  LAEQLQATWQI-HFSDQLPR--LALWVSKQDHCLLDILWRWRSGELRCEIPLIISNH--- 125

Query: 169 PNSHVIRFLERHGIPYHYL-CAKENEREEELLELV----QNTDFLVLARYMQV 216
           P+   I   ++ GI +H L   KEN+  +E  EL        D +VLA+Y+Q+
Sbjct: 126 PDLKSIA--DQFGIDFHCLPITKENKLAQETAELALLKQYQIDLVVLAKYLQI 176

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis GN=purU PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 18/179 (10%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
           +  C D  GI+A +S  +A  G NI++ D     PE    F  R+ F    +    +++ 
Sbjct: 34  LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92

Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            DF   S + +      R  +     +VA++AS ++HCL+D L+  + G+L + +  VI+
Sbjct: 93  RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150

Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQV 216
           NH   P+  +HV  F    G+P+ ++ A  + R E    +L  L  N D +VLARYMQ+
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQI 202

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 18/179 (10%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVF--VPEKKNVFYSRSEFIFDPIKWPREQMD 103
           +  C D  GI+A +S  +A  G NI++ D     PE    F  R+ F    +    +++ 
Sbjct: 34  LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92

Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            DF   S + +      R  +     +VA++AS ++HCL+D L+  + G+L + +  VI+
Sbjct: 93  RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150

Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQV 216
           NH   P+  +HV  F    G+P+ ++ A  + R E    +L  L  N D +VLARYMQ+
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQI 202

Mycobacterium bovis (taxid: 1765)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12) GN=purU PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 28/178 (15%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQV 216
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+V
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMRV 172

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU PE=3 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 28/178 (15%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQV 216
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+V
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMRV 172

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Shigella flexneri (taxid: 623)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 28/178 (15%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQV 216
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+V
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMRV 172

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain P-1) GN=purU PE=3 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
              CP+ +GIV  ++  +      I+    +        + R +F  D      + +  +
Sbjct: 10  TLQCPEGIGIVHAVTGFLVRHQRTIVELKQYDDMSAGRLFLRVDFAGDSAPDLLDALRSE 69

Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           F +++  F+ M   +R  +   K KV ++ SK EHCL D L+    G LP+E+  V SNH
Sbjct: 70  FSEVAAKFD-MDWQLR--ERGQKTKVLIMVSKFEHCLQDLLFRMHSGDLPIEVVGVASNH 126

Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQNT--DFLVLARYMQV 216
              P+   +  +E +GI +H++   ++ +   E  LLEL+  T  + +VLARYMQV
Sbjct: 127 ---PDHRSL--VEWYGIGFHHIPISKDTKPRAEAALLELIDQTGAELVVLARYMQV 177

Corynebacterium sp. (strain P-1) (taxid: 69006)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 26/177 (14%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
           CPD+ G++AK++        NIL  + FV  +   F+ R+E   IF+        + ED 
Sbjct: 11  CPDDKGLIAKITNICYKHQLNILHNNEFVDFETKHFFMRTELEGIFN-----EATLLEDL 65

Query: 107 -FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
            + L +  N      R+     K ++ +L +K+ HCL D L     G L VEI  VI NH
Sbjct: 66  KYSLPEETNC-----RLIGTQRK-RIVILVTKEAHCLGDILMKNYYGALDVEIAAVIGNH 119

Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ--NTDFLVLARYMQV 216
           D     ++   +ER  IP+H L + EN    E ++ L E +     D++VLA+YM+V
Sbjct: 120 D-----NLRELVERFNIPFH-LVSHENLTRVEHDKLLAEKIDEYTPDYIVLAKYMRV 170

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
359495984	329	PREDICTED: formyltetrahydrofolate deform	0.947	0.775	0.674	3e-97
255579631	341	phosphoribosylamine-glycine ligase, puta	0.929	0.733	0.676	1e-95
449458970	326	PREDICTED: formyltetrahydrofolate deform	0.947	0.782	0.636	2e-90
358248700	316	uncharacterized protein LOC100780134 [Gl	0.910	0.775	0.636	1e-87
224074167	317	formyltetrahydrofolate deformylase [Popu	0.903	0.766	0.639	3e-87
356563338	316	PREDICTED: formyltetrahydrofolate deform	0.910	0.775	0.632	7e-87
357502477	324	Formyltetrahydrofolate deformylase [Medi	0.925	0.768	0.627	3e-83
217071818	324	unknown [Medicago truncatula]	0.802	0.666	0.697	3e-83
388513597	322	unknown [Medicago truncatula]	0.802	0.670	0.697	3e-83
224138620	317	formyltetrahydrofolate deformylase [Popu	0.851	0.722	0.640	1e-82

>gi|359495984|ref|XP_003635126.1| PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera] gi|297744389|emb|CBI37363.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 211/267 (79%), Gaps = 12/267 (4%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIE---SSVSPTLTHGIHVFHCPDEVGIVA 57
           M L RRLS+SL Q++ FTNRSFKSLKFP + +    SS   +L HGIHVFHCPD VGIVA
Sbjct: 1   MSLRRRLSTSLPQLLGFTNRSFKSLKFPQQSLHCFNSSSESSLAHGIHVFHCPDGVGIVA 60

Query: 58  KLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117
           KLS+CIASRGGNIL AD+FVPE K VFYSRSEFIFDP KWPR QMDEDF KLS MFNAM+
Sbjct: 61  KLSDCIASRGGNILGADIFVPENKKVFYSRSEFIFDPAKWPRAQMDEDFLKLSNMFNAMK 120

Query: 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177
           SVVRVP +DPKYK++VLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNHDRGPN+HV RFL
Sbjct: 121 SVVRVPILDPKYKISVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHDRGPNTHVFRFL 180

Query: 178 ERHGIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQV---NRIRLYVAQLFSCLVTE 233
           ERHGIPYHYL   KEN+RE E+L+LVQ+TDFLVLARYMQ+   N ++ Y       ++  
Sbjct: 181 ERHGIPYHYLHTTKENKREGEILDLVQDTDFLVLARYMQILSGNFLKSYGKD----IINI 236

Query: 234 QLTVLNSSLGGINISLSSFDATIEWIS 260
              +L S  GG N S  +FDA ++ I 
Sbjct: 237 HHGLLPSFKGG-NPSKQAFDAGVKLIG 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579631|ref|XP_002530656.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] gi|223529789|gb|EEF31725.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/260 (67%), Positives = 211/260 (81%), Gaps = 10/260 (3%)

Query: 5   RRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIA 64
           RR+SS + QV  F NRSFKSLK PGE ++SS SP LTHGIHVFHCPD VGIVAKLS+CIA
Sbjct: 6   RRISSVIPQVFGFANRSFKSLKTPGEFLDSS-SPCLTHGIHVFHCPDAVGIVAKLSDCIA 64

Query: 65  SRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124
           SRGGNIL ADVFVPE KNVFYSRSEF+ D IKWPR Q+DEDF KLSKMF+AM+SVVRVPD
Sbjct: 65  SRGGNILGADVFVPENKNVFYSRSEFVCDRIKWPRAQIDEDFLKLSKMFHAMKSVVRVPD 124

Query: 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           +DPK+K+AVLASKQEHCL+D L+ WQ+G+ P+EITCVISNH+RGPN+H+IRFLER+GIPY
Sbjct: 125 LDPKFKIAVLASKQEHCLIDLLHRWQDGRFPIEITCVISNHERGPNTHLIRFLERNGIPY 184

Query: 185 HYLC-AKENEREEELLELVQNTDFLVLARYMQV---NRIRLYVAQLFSCLVTEQLTVLNS 240
           HYLC  KEN+RE E+L+LV++TDFLVLARYMQ+   N +R Y       ++     +L S
Sbjct: 185 HYLCTTKENKREMEILDLVKDTDFLVLARYMQILSGNFLRSYGKD----IINIHHGLLPS 240

Query: 241 SLGGINISLSSFDATIEWIS 260
             GG + S  +FDA ++ I 
Sbjct: 241 FKGG-HPSKQAFDAGVKLIG 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458970|ref|XP_004147219.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] gi|449504944|ref|XP_004162337.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/264 (63%), Positives = 197/264 (74%), Gaps = 9/264 (3%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M L+RR+SSS  +V  F NRS  SL  PGE ++   S +  HGIHVFHCPD VGIVAKLS
Sbjct: 1   MALIRRVSSSFPRVFGFANRSLSSLNSPGEALDLPTSSSFAHGIHVFHCPDAVGIVAKLS 60

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           ECIAS+GGNIL AD+FVPE KNVFYSRS+F+FDP KWPR QMDEDF K+SK FNA +SVV
Sbjct: 61  ECIASKGGNILNADIFVPENKNVFYSRSQFLFDPCKWPRMQMDEDFLKISKTFNAWKSVV 120

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVPD DPKYK+A+ ASKQ+HCLVD L+ WQ GKLPVEITCVISNHDR PN+HV+RFLERH
Sbjct: 121 RVPDQDPKYKIAIFASKQDHCLVDLLHQWQGGKLPVEITCVISNHDRAPNTHVMRFLERH 180

Query: 181 GIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQV---NRIRLYVAQLFSCLVTEQLT 236
            I YHYL    +N+RE E+LELV+NTDFLVLARYMQV   N +R Y   + +        
Sbjct: 181 DIAYHYLHTYNDNKREGEILELVKNTDFLVLARYMQVLSGNFLRSYGNDVINIHHG---- 236

Query: 237 VLNSSLGGINISLSSFDATIEWIS 260
            L  S  G N S  +F+A ++ I 
Sbjct: 237 -LLPSFKGSNPSKQAFNAGVKLIG 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248700|ref|NP_001240181.1| uncharacterized protein LOC100780134 [Glycine max] gi|255636588|gb|ACU18632.1| unknown [Glycine max]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/264 (63%), Positives = 202/264 (76%), Gaps = 19/264 (7%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M + RR+  ++  +VK  N SFKSL  P          +LTHGIHVFHCPD VGIVAKLS
Sbjct: 1   MAMARRVPRNVLGLVK-RNMSFKSLDPPS---------SLTHGIHVFHCPDAVGIVAKLS 50

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           +CIASRGGNILAADVFVPE K+VFYSRS+F+FDP+KWPR QM+EDF KLS+ F A+RSVV
Sbjct: 51  DCIASRGGNILAADVFVPENKHVFYSRSDFVFDPVKWPRVQMEEDFLKLSQTFKAIRSVV 110

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVP +DPKYK+AVLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNH RG N+HVIRFLERH
Sbjct: 111 RVPALDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHHRGSNTHVIRFLERH 170

Query: 181 GIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQV---NRIRLYVAQLFSCLVTEQLT 236
           GIPYHYLC  KEN+RE E+L+LVQNTD LVLARYMQ+   N +R Y   + +        
Sbjct: 171 GIPYHYLCTTKENKREGEILQLVQNTDILVLARYMQILSGNFLRSYGNDIINI----HHG 226

Query: 237 VLNSSLGGINISLSSFDATIEWIS 260
           +L S  GG N S  +F+A ++ I 
Sbjct: 227 LLPSFKGG-NPSKQAFEAGVKLIG 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074167|ref|XP_002304283.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222841715|gb|EEE79262.1| formyltetrahydrofolate deformylase [Populus trichocarpa]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/258 (63%), Positives = 201/258 (77%), Gaps = 15/258 (5%)

Query: 5   RRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPT-LTHGIHVFHCPDEVGIVAKLSECI 63
           RR+SS + QV  F  RSFKS          S+ P+ +THGIHVF CPD VGIVAKLSECI
Sbjct: 6   RRVSSRIPQVFGF-GRSFKS----------SLDPSSITHGIHVFQCPDAVGIVAKLSECI 54

Query: 64  ASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123
           ASRGGNIL AD+FVP+ KNVFYSRSEFIFDP+KWPR QMDEDF ++SKMF+A RSVVRVP
Sbjct: 55  ASRGGNILGADIFVPQNKNVFYSRSEFIFDPVKWPRVQMDEDFLRISKMFDATRSVVRVP 114

Query: 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
            +DPK+K+AV+ASKQEHCL+D L+ WQ+G+LPV+IT VISNHDRGP++HVIRFLER+GIP
Sbjct: 115 KLDPKFKIAVIASKQEHCLIDLLHSWQDGRLPVDITRVISNHDRGPDTHVIRFLERNGIP 174

Query: 184 YHYL-CAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSL 242
           YHYL   KEN+REEE+L+LVQNTDFLVLARYMQ+   + ++      ++     +L S  
Sbjct: 175 YHYLHTTKENKREEEILDLVQNTDFLVLARYMQILSGK-FLQSYGKDIINIHHGLLPSFK 233

Query: 243 GGINISLSSFDATIEWIS 260
           GG N S  +FDA ++ I 
Sbjct: 234 GG-NPSKQAFDAGVKLIG 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563338|ref|XP_003549921.1| PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 167/264 (63%), Positives = 200/264 (75%), Gaps = 19/264 (7%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M + RR+   +   V+  N SFKSL  P          +LTHGIHVFHCPD VGIVAKLS
Sbjct: 1   MAMARRVPRYVLGSVQ-RNMSFKSLDPPS---------SLTHGIHVFHCPDAVGIVAKLS 50

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           +CIASRGGNILAADVFVPE K VFYSRS+F+FDP+KWPR QM+EDF KLS+ FNA+RSVV
Sbjct: 51  DCIASRGGNILAADVFVPENKQVFYSRSDFVFDPVKWPRVQMEEDFLKLSQTFNAIRSVV 110

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVP +DPKYK+AVLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNH RG N+HVIRFLERH
Sbjct: 111 RVPALDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHHRGSNTHVIRFLERH 170

Query: 181 GIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQV---NRIRLYVAQLFSCLVTEQLT 236
           GIPYH LC  KEN+RE E+L+L+QNTDFLVLARYMQ+   N +R Y       ++     
Sbjct: 171 GIPYHCLCTTKENKREGEILQLIQNTDFLVLARYMQILSGNFLRSYGND----IINIHHG 226

Query: 237 VLNSSLGGINISLSSFDATIEWIS 260
           +L S  GG N S  +F+A ++ I 
Sbjct: 227 LLPSFKGG-NPSKQAFEAGVKLIG 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502477|ref|XP_003621527.1| Formyltetrahydrofolate deformylase [Medicago truncatula] gi|355496542|gb|AES77745.1| Formyltetrahydrofolate deformylase [Medicago truncatula]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/263 (62%), Positives = 201/263 (76%), Gaps = 14/263 (5%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 4   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 60  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 119

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 120 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 179

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQV---NRIRLYVAQLFSCLVTEQLTV 237
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ+   N IR Y   + +        +
Sbjct: 180 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQILSGNFIRSYGNDIINI----HHGL 235

Query: 238 LNSSLGGINISLSSFDATIEWIS 260
           L S  GG + S  +F+A ++ I 
Sbjct: 236 LPSFKGG-HPSKQAFEAGVKLIG 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071818|gb|ACJ84269.1| unknown [Medicago truncatula]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 185/225 (82%), Gaps = 9/225 (4%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 4   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 60  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 119

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 120 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 179

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQV---NRIRLY 222
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ+   N IR Y
Sbjct: 180 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQILSGNFIRSY 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513597|gb|AFK44860.1| unknown [Medicago truncatula]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 185/225 (82%), Gaps = 9/225 (4%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 2   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 57

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 58  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 117

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 118 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 177

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQV---NRIRLY 222
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ+   N IR Y
Sbjct: 178 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQILSGNFIRSY 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138620|ref|XP_002326648.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222833970|gb|EEE72447.1| formyltetrahydrofolate deformylase [Populus trichocarpa]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/242 (64%), Positives = 189/242 (78%), Gaps = 13/242 (5%)

Query: 20  RSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE 79
           RSFKS+           S ++THGIHVF CPD VGIVAKLS+CIASRGGNIL ADVFVPE
Sbjct: 21  RSFKSID----------SSSITHGIHVFQCPDAVGIVAKLSDCIASRGGNILGADVFVPE 70

Query: 80  KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE 139
            KNVFYSRSEFIFDP+KWPR QMDEDF ++SKMF+A RSVVRVP +DPK+K AVLASKQE
Sbjct: 71  NKNVFYSRSEFIFDPVKWPRLQMDEDFLRISKMFDATRSVVRVPKLDPKFKTAVLASKQE 130

Query: 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEEL 198
           HCL+D L+ WQ+G+LPV+IT VISNHDR PN+HV+RFLER+ IPYHYL  +KEN RE+E+
Sbjct: 131 HCLIDLLHSWQDGRLPVDITRVISNHDRFPNTHVVRFLERNSIPYHYLGTSKENNREDEI 190

Query: 199 LELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEW 258
           L+LVQNTDFLVLARYMQ+   + ++ +    ++     +L S  GG + S  +FDA ++ 
Sbjct: 191 LDLVQNTDFLVLARYMQLLSGK-FLQRYRKDIINIHHGLLPSFKGG-HPSKQAFDAGVKL 248

Query: 259 IS 260
           I 
Sbjct: 249 IG 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2130893	328	AT4G17360 [Arabidopsis thalian	0.743	0.609	0.671	5.3e-72
TAIR|locus:505006677	323	AT5G47435 [Arabidopsis thalian	0.721	0.600	0.661	8.9e-70
TIGR_CMR|CPS_4357	286	CPS_4357 "formyltetrahydrofola	0.624	0.587	0.298	1.3e-15
TIGR_CMR|DET_1237	284	DET_1237 "formyltetrahydrofola	0.605	0.573	0.304	1.3e-15
UNIPROTKB|G4MX54	284	MGG_08008 "Formyltetrahydrofol	0.594	0.563	0.321	4.2e-14
TIGR_CMR|CPS_2482	292	CPS_2482 "formyltetrahydrofola	0.646	0.595	0.305	5.9e-13
TIGR_CMR|CPS_4036	292	CPS_4036 "formyltetrahydrofola	0.646	0.595	0.305	5.9e-13
TIGR_CMR|CPS_3620	292	CPS_3620 "formyltetrahydrofola	0.646	0.595	0.3	2.3e-11
UNIPROTKB|Q9KQK6	277	VC_1992 "Formyltetrahydrofolat	0.576	0.559	0.28	1.9e-09
TIGR_CMR|VC_1992	277	VC_1992 "formyltetrahydrofolat	0.576	0.559	0.28	1.9e-09

TAIR|locus:2130893 AT4G17360 [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 135/201 (67%), Positives = 161/201 (80%)

Query:    17 FTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76
             FT  SFKS +F GE ++SSVSP L  G HVFHCPD VGIVAKLS+CIA++GGNIL  DVF
Sbjct:    19 FTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVF 78

Query:    77 VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS 136
             VPE KNVFYSRSEFIFDP+KWPR QMDEDF  +++ F+A+ SVVRVP +DPKYK+A+L S
Sbjct:    79 VPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLS 138

Query:   137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXX 195
             KQ+HCLV+ L+ WQ+GKLPV+ITCVISNH+R PN+HV+RFL+RHGI YHYL         
Sbjct:   139 KQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIE 198

Query:   196 XXXXXXVQNTDFLVLARYMQV 216
                   V+ TDFLVLARYMQ+
Sbjct:   199 EEILELVKGTDFLVLARYMQL 219

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:505006677 AT5G47435 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 129/195 (66%), Positives = 157/195 (80%)

Query:    23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN 82
             KS +F GE ++SSVSP L  G+HVFHC D VGIVAKLS+CIA++GGNIL  DVFVPE  N
Sbjct:    20 KSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNN 79

Query:    83 VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCL 142
             VFYSRSEFIFDP+KWPR Q+DEDF  +++ + A+ SVVRVP IDPKYK+A+L SKQ+HCL
Sbjct:    80 VFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCL 139

Query:   143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KXXXXXXXXXXX 201
             V+ L+ WQ+GKLPV+ITCVISNH+R  N+HV+RFLERHGIPYHY+   K           
Sbjct:   140 VEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIPYHYVSTTKENKREDDILEL 199

Query:   202 VQNTDFLVLARYMQV 216
             V++TDFLVLARYMQ+
Sbjct:   200 VKDTDFLVLARYMQI 214

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

TIGR_CMR|CPS_4357 CPS_4357 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 54/181 (29%), Positives = 80/181 (44%)

Query:    41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPRE 100
             TH I  + CPD  G++AK+S+ + S G  I     +       F+SR  F    +     
Sbjct:     5 THYILTWQCPDNTGVLAKVSQSLFSHGAFITETSQYSDPYSETFFSRIAFDDRNLTVSSS 64

Query:   101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITC 160
             +  +   +L+K       + +  D+ P   +AV  SK +HCLV  L  W+ G LP+ I  
Sbjct:    65 EFVKALNELAKPLAMQYQLRKRADV-PNVLIAV--SKDDHCLVSLLTKWRSGALPINIVG 121

Query:   161 VISNHDRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
             VISNH      +     E H +P+++L                     N D LVLARYMQ
Sbjct:   122 VISNHQ-----YCQALSEWHNVPFYHLPVNAETKLEQEAQITDLMEELNIDLLVLARYMQ 176

Query:   216 V 216
             +
Sbjct:   177 I 177

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|DET_1237 DET_1237 "formyltetrahydrofolate deformylase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 53/174 (30%), Positives = 81/174 (46%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HC D+ GI++ +S  I    GNI+  D FV    N F+ R E+        REQM+ +  
Sbjct:     9 HCTDKKGIISSISSFICRNNGNIITLDEFVDHPSNTFFMRLEWDISAFALSREQMEAEIA 68

Query:   108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
              + + +       ++   D K ++AV  SK +HCL D +  ++ G+L  +I  +ISNH  
Sbjct:    69 LMGQEY-CYADNWQIFYSDRKPRLAVFVSKYDHCLWDIMLRYKAGELKCDIPLIISNH-- 125

Query:   168 GPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXV-----QNTDFLVLARYMQV 216
              PN   +  L   GI Y  +                     + DF++LARYMQV
Sbjct:   126 -PNLKPVADL--FGIDYKVVKVTPDNKLEAENEQTCLINEYSIDFMILARYMQV 176

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|G4MX54 MGG_08008 "Formyltetrahydrofolate deformylase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 182 (69.1 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 55/171 (32%), Positives = 82/171 (47%)

Query:    49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
             CPD+ GIV  ++   ASR  NIL    F       F+ R  F   P+    + +  DF  
Sbjct:    13 CPDKPGIVHAVTGIFASRSVNILDLKQFSDTGSQKFFMRVHF--GPVAETAD-LSADFSA 69

Query:   109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DR 167
             L+  ++ M   +R P +  K +V ++ SK  HCL D L+  Q G+L V++  ++SNH D 
Sbjct:    70 LASQYDPMTWDIR-P-VAQKTRVLIMVSKIGHCLNDLLFRAQSGRLAVDVALIVSNHPDF 127

Query:   168 GP--NSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQV 216
              P   SH + F  RH +P                   ++ + +VLARYMQV
Sbjct:   128 APLAASHGVEF--RH-LPVTKETKTQQEEEILKLAKERDVELIVLARYMQV 175

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TIGR_CMR|CPS_2482 CPS_2482 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 173 (66.0 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 58/190 (30%), Positives = 86/190 (45%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP   G V  ++  +  +G  I     F     N F+ R EF  
Sbjct:     2 SDIKPVSQTH-IITADCPSRPGTVDVVTRFLCEKGFYINEIHSFDDTAVNRFFIRIEFRA 60

Query:    93 DPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
                  +  E   ++F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 QTATDFSAETFSQEFEQRASEFEMQWQLASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXXXXXXX--XVQNTD-- 206
             G L +EI  +ISNH   P+   +   + HGIPY++L   K             +Q +D  
Sbjct:   118 GDLDIEIPAIISNH---PDLEELA--KWHGIPYYHLPITKDTKPEQEAKVWQIIQESDAD 172

Query:   207 FLVLARYMQV 216
              +VLARYMQV
Sbjct:   173 LVVLARYMQV 182

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4036 CPS_4036 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 173 (66.0 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 58/190 (30%), Positives = 86/190 (45%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP   G V  ++  +  +G  I     F     N F+ R EF  
Sbjct:     2 SDIKPVSQTH-IITADCPSRPGTVDVVTRFLCEKGFYINEIHSFDDTAVNRFFIRIEFRA 60

Query:    93 DPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
                  +  E   ++F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 QTATDFSAETFSQEFEQRASEFEMQWQLASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXXXXXXX--XVQNTD-- 206
             G L +EI  +ISNH   P+   +   + HGIPY++L   K             +Q +D  
Sbjct:   118 GDLDIEIPAIISNH---PDLEELA--KWHGIPYYHLPITKDTKPEQEAKVWQIIQESDAD 172

Query:   207 FLVLARYMQV 216
              +VLARYMQV
Sbjct:   173 LVVLARYMQV 182

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3620 CPS_3620 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 167 (63.8 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 57/190 (30%), Positives = 89/190 (46%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP + G V  ++  +  +G  I     F    ++ F+ R EF  
Sbjct:     2 SDIKPVSQTHVITA-SCPSQPGTVDVVTRFLFEQGFYINEIHSFDDTDQDRFFIRIEFRA 60

Query:    93 DPI-KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
             D    + R+   + F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 DTATNFNRDDFCQQFGERASEFEMKWELASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXX--XXXXXXXXVQNT--D 206
             G L +EI  +ISNH   P+   +   + H IPY++L   K             +Q++  D
Sbjct:   118 GDLNIEIPAIISNH---PDLEDLA--KWHDIPYYHLPITKETKPEQEAKVFQIIQDSEAD 172

Query:   207 FLVLARYMQV 216
              +VLARYMQV
Sbjct:   173 LVVLARYMQV 182

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|Q9KQK6 VC_1992 "Formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 154 (59.3 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 49/175 (28%), Positives = 77/175 (44%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HCPD  G+++K++        NI+  + FV      F+ R+E          E    D  
Sbjct:     9 HCPDAPGLISKITNICYKHQLNIIHNNEFVDNASGHFFMRTEL---------EGYFNDAT 59

Query:   108 KLSKMFNAMRSVVRVPDIDPKYK-VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
              L+ + +A+    R   I    K + +L +K+ HCL D L    +G L V+I  V+ N+D
Sbjct:    60 LLADLDHALPQGTRRKLISSSRKRIVILVTKEAHCLGDILMKNYDGSLDVDIAAVVGNYD 119

Query:   167 RGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQV 216
                   + R  ER  IPYH +  +           +        D+LVLA+YM+V
Sbjct:   120 T-----LQRLTERFDIPYHCVSHEGLSREAHEQALLDVIDQYQPDYLVLAKYMRV 169

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|VC_1992 VC_1992 "formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 154 (59.3 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 49/175 (28%), Positives = 77/175 (44%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HCPD  G+++K++        NI+  + FV      F+ R+E          E    D  
Sbjct:     9 HCPDAPGLISKITNICYKHQLNIIHNNEFVDNASGHFFMRTEL---------EGYFNDAT 59

Query:   108 KLSKMFNAMRSVVRVPDIDPKYK-VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
              L+ + +A+    R   I    K + +L +K+ HCL D L    +G L V+I  V+ N+D
Sbjct:    60 LLADLDHALPQGTRRKLISSSRKRIVILVTKEAHCLGDILMKNYDGSLDVDIAAVVGNYD 119

Query:   167 RGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQV 216
                   + R  ER  IPYH +  +           +        D+LVLA+YM+V
Sbjct:   120 T-----LQRLTERFDIPYHCVSHEGLSREAHEQALLDVIDQYQPDYLVLAKYMRV 169

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN02828	268	PLN02828, PLN02828, formyltetrahydrofolate deformy	1e-111
PRK06027	286	PRK06027, purU, formyltetrahydrofolate deformylase	1e-46
COG0788	287	COG0788, PurU, Formyltetrahydrofolate hydrolase [N	1e-44
TIGR00655	280	TIGR00655, PurU, formyltetrahydrofolate deformylas	4e-35
cd08648	196	cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte	1e-33
PRK13011	286	PRK13011, PRK13011, formyltetrahydrofolate deformy	3e-29
PRK13010	289	PRK13010, purU, formyltetrahydrofolate deformylase	5e-26
cd04875	74	cd04875, ACT_F4HF-DF, N-terminal ACT domain of for	2e-17
cd08645	183	cd08645, FMT_core_GART, Phosphoribosylglycinamide	1e-09
COG0299	200	COG0299, PurN, Folate-dependent phosphoribosylglyc	3e-08
pfam00551	181	pfam00551, Formyl_trans_N, Formyl transferase	1e-06
PRK05647	200	PRK05647, purN, phosphoribosylglycinamide formyltr	1e-05
TIGR00639	190	TIGR00639, PurN, phosphoribosylglycinamide formylt	0.003
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.004
cd08369	173	cd08369, FMT_core, Formyltransferase, catalytic co	0.004

>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase

 Score =  321 bits (824), Expect = e-111
 Identities = 123/159 (77%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 59  LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118
           LS+CIASRGGNIL  DVFVPE KNVFYSRSEFIFDP+KWPR QMDEDF ++SK F A++S
Sbjct: 1   LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60

Query: 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178
           VVRVP +DPKYK+AVLASKQ+HCL+D L+ WQ+G+LPV+ITCVISNH+RGPN+HV+RFLE
Sbjct: 61  VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120

Query: 179 RHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQV 216
           RHGIPYHYL   KEN+RE+E+LELV+ TDFLVLARYMQ+
Sbjct: 121 RHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQI 159

Length = 268

>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed

 Score =  156 bits (398), Expect = 1e-46
 Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 13/173 (7%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD  GIVA +S  +   GGNI+ AD FV  +   F+ R EF  D + +  E +  DF  
Sbjct: 13  CPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 72

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           L++ F       R+ D   + +V +L SK++HCL D L+ W+ G+LPVEI  VISNHD  
Sbjct: 73  LAEEFEM---DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-- 127

Query: 169 PNSHVIRFLERHGIPYHYLCA-KEN--EREEELLELVQ--NTDFLVLARYMQV 216
               +   +ER GIP+H++   KE   E E  LLEL+     D +VLARYMQ+
Sbjct: 128 ---DLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQI 177

Length = 286

>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

 Score =  151 bits (385), Expect = 1e-44
 Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 13/185 (7%)

Query: 37  SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK 96
           S      I    CPD+ GIVA +S  +A  G NI+ +D F   +   F+ R EF  +   
Sbjct: 2   SNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP 61

Query: 97  WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPV 156
             RE +   F  L++ F       R+ D   + ++A+L SK++HCL D LY W+ G+LP 
Sbjct: 62  LDREALRAAFAPLAEEFGMD---WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPA 118

Query: 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLA 211
           EI  VISNHD      +   +ER  IP+H++   KEN  E E  LLEL++    D +VLA
Sbjct: 119 EIVAVISNHD-----DLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLA 173

Query: 212 RYMQV 216
           RYMQ+
Sbjct: 174 RYMQI 178

Length = 287

>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase

 Score =  126 bits (319), Expect = 4e-35
 Identities = 63/173 (36%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G+VA +S  IA  G NI++ D     +   F+ R EF  +  +     +   F  
Sbjct: 7   CPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
                  M     +   D   +VA+L SK++HCL D L+ W  G+L  EI  VISNH+  
Sbjct: 67  ALAEKFEM--TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDL 124

Query: 169 PNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQV 216
             S V RF    GIP+HY+   K+N  E E+  LEL++    D +VLA+YMQ+
Sbjct: 125 -RSLVERF----GIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQI 172

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 280

>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain

 Score =  120 bits (303), Expect = 1e-33
 Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL- 187
            +VA+  SK++HCL D L+ W+EG+LP EI  VISNH            ER GIP+H++ 
Sbjct: 1   KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDL-----RPLAERFGIPFHHIP 55

Query: 188 ----CAKENEREEELLELVQNTDFLVLARYMQV 216
                  E E E+  L      D +VLARYMQ+
Sbjct: 56  VTKDTKAEAEAEQLELLEEYGVDLVVLARYMQI 88

Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine. Length = 196

>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed

 Score =  111 bits (279), Expect = 3e-29
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 20/177 (11%)

Query: 48  HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
            CP   GIVA ++  +A  G  I     F       F+ R EF  +      E +DED  
Sbjct: 13  SCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE------EGLDEDAL 66

Query: 108 K--LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           +   + +         + D   + KV ++ SK +HCL D LY W+ G+LP++I  V+SNH
Sbjct: 67  RAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNH 126

Query: 166 -DRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQV 216
            D  P          HGIP+H+     +   ++E ++L++V+    + +VLARYMQV
Sbjct: 127 PDLEP------LAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQV 177

Length = 286

>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed

 Score =  102 bits (257), Expect = 5e-26
 Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 16/175 (9%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFF 107
           CP   GIVA +S  +A +G  I+    F  ++   F+ R  F     +    +   ++F 
Sbjct: 16  CPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQ 75

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-D 166
            +++ F+   ++        + KV ++ SK +HCL D LY W+ G+L ++I  +ISNH D
Sbjct: 76  PVAEKFDMQWAIHPDGQ---RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPD 132

Query: 167 RGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQV 216
             P +        H IP+H+L    +   ++E ++L+L++    + +VLARYMQV
Sbjct: 133 LQPLAVQ------HDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQV 181

Length = 289

>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 44  IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMD 103
           I    CPD  GIVA +S  +A  GGNI+ +D FV      F+ R EF  +     RE ++
Sbjct: 1   ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALE 60

Query: 104 EDFFKLSKMFNA 115
             F  ++  F+ 
Sbjct: 61  AAFAPVAAEFDM 72

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 19/96 (19%)

Query: 130 KVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           ++AVLAS      Q   L+D +   + GKL  EI  VISN+   P+++ +   ++ GIP 
Sbjct: 1   RIAVLASGSGSNLQA--LIDAI---KSGKLNAEIVLVISNN---PDAYGLERAKKAGIPT 52

Query: 185 HYL----CAKENEREEELLELVQ--NTDFLVLARYM 214
             +         E +E LLEL++    D +VLA +M
Sbjct: 53  FVINRKDFPSREEFDEALLELLKEYKVDLIVLAGFM 88

Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities. Length = 183

>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 25/99 (25%)

Query: 130 KVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           K+AVLAS          +          + GKL  EI  VIS+     +++ +    + G
Sbjct: 2   KIAVLASGNGSNLQAIIDAI--------KGGKLDAEIVAVISDK---ADAYALERAAKAG 50

Query: 182 IPYHYLCAKENE----REEELLELVQN--TDFLVLARYM 214
           IP   L  KE       +  L+E +     D +VLA YM
Sbjct: 51  IPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYM 89

Length = 200

>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           K+AVL S     L   L   ++G   VEI  V++N D+      +   E+ GIP   +  
Sbjct: 2   KIAVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKA---AGLERAEQAGIPVE-VFE 57

Query: 190 KEN-----EREEELLELVQ--NTDFLVLARYMQV 216
            +N     + + EL + +     D +VLA YM++
Sbjct: 58  HKNFTPRSQFDSELADSLAALAPDLIVLAGYMRI 91

This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA contains a related domain of unknown function. PRTH_PORGI contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function. Length = 181

>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 22/101 (21%)

Query: 130 KVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           ++ VLAS      Q   ++D       G+LP EI  VIS+    P+++ +   E  GIP 
Sbjct: 3   RIVVLASGNGSNLQ--AIID---ACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPT 54

Query: 185 HYLCAKENE-REE---ELLELVQ--NTDFLVLARYMQVNRI 219
             L  K+   RE     L+E +     D +VLA +M   RI
Sbjct: 55  FVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFM---RI 92

Length = 200

>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           ++ VL S     L   +   +EGK+P  +  VISN    P+++ +    + GIP   L  
Sbjct: 2   RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSL 58

Query: 190 KE----NEREEELLELVQ--NTDFLVLARYMQV 216
           K+       ++ ++E ++    D +VLA +M++
Sbjct: 59  KDFPSREAFDQAIIEELRAHEVDLVVLAGFMRI 91

This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (Pfam family pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 190

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY 85
              PD  G++AK+   +A  G NI + +           
Sbjct: 2  TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEAD 41

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190
           + +L S   +     L      +   EI  V+++ D    +  +      G  Y      
Sbjct: 1   IVILGSG--NIGQRVLKALLSKEG-HEIVGVVTHPDSPRGTAQLSLELVGGKVYLDSNIN 57

Query: 191 ENEREEELLELVQNTDFLVLARYMQV---NRIRLY 222
             E  E L E     D +V   + Q+     ++L 
Sbjct: 58  TPELLELLKEF--APDLIVSINFRQIIPPEILKLP 90

Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	100.0
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	100.0
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	100.0
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	100.0
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	100.0
PLN02828	268	formyltetrahydrofolate deformylase	100.0
COG0299	200	PurN Folate-dependent phosphoribosylglycinamide fo	100.0
TIGR00639	190	PurN phosphoribosylglycinamide formyltransferase,	100.0
PLN02331	207	phosphoribosylglycinamide formyltransferase	100.0
KOG3076	206	consensus 5'-phosphoribosylglycinamide formyltrans	100.0
PRK05647	200	purN phosphoribosylglycinamide formyltransferase;	100.0
PLN02285	334	methionyl-tRNA formyltransferase	99.97
PF00551	181	Formyl_trans_N: Formyl transferase; InterPro: IPR0	99.96
COG0223	307	Fmt Methionyl-tRNA formyltransferase [Translation,	99.96
PRK06988	312	putative formyltransferase; Provisional	99.94
TIGR00460	313	fmt methionyl-tRNA formyltransferase. The top-scor	99.93
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	99.93
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.9
PRK07579	245	hypothetical protein; Provisional	99.86
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	99.69
COG3830	90	ACT domain-containing protein [Signal transduction	99.65
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	99.65
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	99.65
KOG3082	338	consensus Methionyl-tRNA formyltransferase [Transl	99.63
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	99.62
PRK00194	90	hypothetical protein; Validated	99.59
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	99.58
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	99.57
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.57
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.5
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.32
KOG2452	881	consensus Formyltetrahydrofolate dehydrogenase [Nu	98.95
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	98.95
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	98.71
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.7
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	98.59
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.47
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	98.34
PRK08577	136	hypothetical protein; Provisional	98.26
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	98.09
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.04
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.02
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	98.01
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	98.0
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.99
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.97
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.96
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.96
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.91
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.89
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	97.87
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.86
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.84
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.8
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.76
PRK04435	147	hypothetical protein; Provisional	97.74
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.73
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.61
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.58
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.56
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.55
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.54
PRK03381	774	PII uridylyl-transferase; Provisional	97.54
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.49
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.47
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.46
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.39
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	97.38
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	97.38
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.36
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.35
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.32
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	97.27
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	97.22
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	97.22
cd02116	60	ACT ACT domains are commonly involved in specifica	97.13
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.1
COG1707	218	ACT domain-containing protein [General function pr	96.83
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.81
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.72
PRK07334	403	threonine dehydratase; Provisional	96.63
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	96.54
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	96.49
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	96.47
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.42
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	96.35
PRK05092	931	PII uridylyl-transferase; Provisional	96.27
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	96.22
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	96.11
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.1
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	96.05
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	95.88
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.87
PRK03381	774	PII uridylyl-transferase; Provisional	95.74
PRK05092	931	PII uridylyl-transferase; Provisional	95.67
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	95.6
COG4492	150	PheB ACT domain-containing protein [General functi	95.59
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.51
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.12
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	95.04
PRK08818	370	prephenate dehydrogenase; Provisional	94.99
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	94.98
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.74
PRK08198	404	threonine dehydratase; Provisional	94.53
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	94.33
PRK06545	359	prephenate dehydrogenase; Validated	94.21
PRK06382	406	threonine dehydratase; Provisional	94.19
COG4747	142	ACT domain-containing protein [General function pr	94.17
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.14
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	93.95
PRK05007	884	PII uridylyl-transferase; Provisional	93.89
PRK11899	279	prephenate dehydratase; Provisional	93.88
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.86
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	93.83
PRK06349	426	homoserine dehydrogenase; Provisional	93.72
COG2102	223	Predicted ATPases of PP-loop superfamily [General	93.59
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.55
COG2150	167	Predicted regulator of amino acid metabolism, cont	93.51
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	93.49
PRK03059	856	PII uridylyl-transferase; Provisional	93.4
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	93.34
PRK01759	854	glnD PII uridylyl-transferase; Provisional	93.27
PRK01759	854	glnD PII uridylyl-transferase; Provisional	93.26
PRK05007	884	PII uridylyl-transferase; Provisional	93.03
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.87
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	92.62
PRK00275	895	glnD PII uridylyl-transferase; Provisional	92.52
PRK00275	895	glnD PII uridylyl-transferase; Provisional	92.17
PRK08300	302	acetaldehyde dehydrogenase; Validated	91.95
PRK04374	869	PII uridylyl-transferase; Provisional	91.86
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	91.8
COG1570	440	XseA Exonuclease VII, large subunit [DNA replicati	91.73
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	91.69
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	91.59
PRK08526	403	threonine dehydratase; Provisional	91.56
PRK04374	869	PII uridylyl-transferase; Provisional	91.55
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	91.37
PRK03059	856	PII uridylyl-transferase; Provisional	91.3
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	91.19
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	91.15
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	91.14
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	90.96
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	90.78
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	90.77
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	90.76
TIGR00290	223	MJ0570_dom MJ0570-related uncharacterized domain.	90.58
cd01994	194	Alpha_ANH_like_IV This is a subfamily of Adenine n	90.07
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	90.0
PF01902	218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	89.65
TIGR00289	222	conserved hypothetical protein TIGR00289. Homologo	89.6
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	89.46
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	89.31
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	89.02
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	88.89
TIGR02079	409	THD1 threonine dehydratase. This model represents	88.59
PRK08639	420	threonine dehydratase; Validated	88.57
PRK00907	92	hypothetical protein; Provisional	88.37
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	88.32
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	88.17
PRK11898	283	prephenate dehydratase; Provisional	87.62
PRK10696	258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	87.42
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	87.36
PRK08841	392	aspartate kinase; Validated	86.93
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	86.54
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	86.34
PRK02047	91	hypothetical protein; Provisional	86.16
cd04920	63	ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK	85.98
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	85.94
PLN02317	382	arogenate dehydratase	85.15
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	85.11
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	85.07
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	84.99
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	84.9
PRK00341	91	hypothetical protein; Provisional	84.16
PLN02551	521	aspartokinase	84.05
PF10686	71	DUF2493: Protein of unknown function (DUF2493); In	83.91
PRK06291	465	aspartate kinase; Provisional	83.71
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	82.03
COG3603	128	Uncharacterized conserved protein [Function unknow	81.41
PRK06635	404	aspartate kinase; Reviewed	81.36
COG0673	342	MviM Predicted dehydrogenases and related proteins	81.13
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	80.79
PRK00286	438	xseA exodeoxyribonuclease VII large subunit; Revie	80.56
PRK15385	225	magnesium transport protein MgtC; Provisional	80.31

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=100.00  E-value=8.3e-57  Score=413.87  Aligned_cols=213  Identities=32%  Similarity=0.559  Sum_probs=194.5

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh-hhhhhccceeeee
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR  121 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~-la~el~l~~~~~~  121 (269)
                      ++|||+|+|||||||+||++|+++|+||+|++|+.+..+|.|+|+++++.|+...+.++|+++|++ +++++++ +  |+
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l-~--i~   77 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEM-T--WE   77 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCC-E--EE
Confidence            479999999999999999999999999999999988778999999999998634789999999999 9999995 5  56


Q ss_pred             ecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--chHHHH
Q 024345          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREEEL  198 (269)
Q Consensus       122 ~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~e~~l  198 (269)
                      ++..++++|||||+||+||||++|+++++.|.++++|++||||++   ++  ..+|+++|||+++++.+. +  +.|.++
T Consensus        78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~---~~--~~~A~~~gIp~~~~~~~~~~~~~~e~~~  152 (280)
T TIGR00655        78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE---DL--RSLVERFGIPFHYIPATKDNRVEHEKRQ  152 (280)
T ss_pred             EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh---hH--HHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence            677888999999999999999999999999999999999999994   44  447999999999988432 2  235678


Q ss_pred             HHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          199 LELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       199 ~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++.++  ++|++|+||||||++   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+||||+
T Consensus       153 ~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iIN-----iHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e  222 (280)
T TIGR00655       153 LELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIIN-----IHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTE  222 (280)
T ss_pred             HHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEE-----ecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcC
Confidence            88887  899999999999999   9999999999     99999999999999999999999999999999986

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=1.9e-56  Score=413.05  Aligned_cols=217  Identities=25%  Similarity=0.432  Sum_probs=195.3

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~--~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      +.|.+++|||+|+|||||||+||++|+++|+||+|++|+.+...+.|+|++++.  .|. +.+.++|+++|+++++++++
T Consensus         5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~l   83 (289)
T PRK13010          5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFDM   83 (289)
T ss_pred             ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhCC
Confidence            457789999999999999999999999999999999998545578999998887  454 67899999999999999995


Q ss_pred             ceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--
Q 024345          116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--  192 (269)
Q Consensus       116 ~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--  192 (269)
                       +|  ++...+.++|||||+||+||||++|++++++|.++++|++||||++   +  +.++|+++|||+++++.+. +  
T Consensus        84 -~~--~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~---~--~~~~A~~~gIp~~~~~~~~~~~~  155 (289)
T PRK13010         84 -QW--AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP---D--LQPLAVQHDIPFHHLPVTPDTKA  155 (289)
T ss_pred             -eE--EEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh---h--HHHHHHHcCCCEEEeCCCccccc
Confidence             54  5566678899999999999999999999999999999999999994   3  4699999999999988442 2  


Q ss_pred             chHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEec
Q 024345          193 EREEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRT  267 (269)
Q Consensus       193 ~~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~  267 (269)
                      ..|.++.+.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+||||
T Consensus       156 ~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiN-----iHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~  230 (289)
T PRK13010        156 QQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAIN-----IHHSFLPGFKGARPYHQAHARGVKLIGATAHFVT  230 (289)
T ss_pred             chHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCcee-----eCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEc
Confidence            23567888888  899999999999999   9999999999     9999999999999999999999999999999998


Q ss_pred             c
Q 024345          268 F  268 (269)
Q Consensus       268 ~  268 (269)
                      +
T Consensus       231 ~  231 (289)
T PRK13010        231 D  231 (289)
T ss_pred             C
Confidence            6

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=2.4e-55  Score=405.31  Aligned_cols=218  Identities=26%  Similarity=0.449  Sum_probs=196.6

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      +..|.++++||+|+||||||++||++|+++|+||++++|+...+.++|+|++++++|+ +.+.++|+++|+++|+++++ 
T Consensus         2 ~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l-   79 (286)
T PRK13011          2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM-   79 (286)
T ss_pred             CCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc-
Confidence            3467899999999999999999999999999999999998666789999999999996 78899999999999999985 


Q ss_pred             eeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCC---c
Q 024345          117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---E  193 (269)
Q Consensus       117 ~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~---~  193 (269)
                      ++  +.....+++|||||+||+|+||++|+++++.|.++++|++|+||++   +  +..+|+++|||+++++.+..   .
T Consensus        80 ~i--~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~~~gIp~~~~~~~~~~~~~  152 (286)
T PRK13011         80 QW--ELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP---D--LEPLAAWHGIPFHHFPITPDTKPQ  152 (286)
T ss_pred             EE--EEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc---c--HHHHHHHhCCCEEEeCCCcCchhh
Confidence            54  4455667899999999999999999999999999999999999994   4  45569999999999873322   2


Q ss_pred             hHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          194 REEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       194 ~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      .|.++.+.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus       153 ~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN-----iHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~  227 (286)
T PRK13011        153 QEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAIN-----IHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTD  227 (286)
T ss_pred             hHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEE-----eccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcC
Confidence            3556778777  899999999999999   9999999999     99999999999999999999999999999999986

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=5e-55  Score=403.21  Aligned_cols=216  Identities=33%  Similarity=0.579  Sum_probs=195.5

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCCCHHHHHHHHHhhhhhhccce
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMR  117 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~-p~~~~~~~~L~e~L~~la~el~l~~  117 (269)
                      .|+++++||+|+||||||++||++|+++||||+|++++..+.+|.|.|+++++. |. +.+.++|+++|+++++++++ +
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-~~~~~~L~~~L~~l~~~l~l-~   80 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-IFNLETLRADFAALAEEFEM-D   80 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHhCC-E
Confidence            467899999999999999999999999999999999987446889999999999 53 56799999999999999996 4


Q ss_pred             eeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--ch
Q 024345          118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ER  194 (269)
Q Consensus       118 ~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~  194 (269)
                        +.++...+|+|||||+||+|+||++|+++++.|.++++|++|+||++   +  +..+|+++|||+++++.+. +  +.
T Consensus        81 --i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~~~gIp~~~~~~~~~~~~~~  153 (286)
T PRK06027         81 --WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD---D--LRSLVERFGIPFHHVPVTKETKAEA  153 (286)
T ss_pred             --EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh---h--HHHHHHHhCCCEEEeccCccccchh
Confidence              45677889999999999999999999999999999999999999994   3  4556999999999987442 2  24


Q ss_pred             HHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          195 EEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       195 e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      |.++.+.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||||+|+||+
T Consensus       154 ~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN-----iHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~  227 (286)
T PRK06027        154 EARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIIN-----IHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTA  227 (286)
T ss_pred             HHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCcee-----cCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcC
Confidence            567788887  899999999999999   9999999999     99999999999999999999999999999999986

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.9e-55  Score=395.88  Aligned_cols=217  Identities=34%  Similarity=0.551  Sum_probs=202.4

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~  118 (269)
                      .+.++++|+.|+|+||||++||++|+++||||.+.+|+.+..+|.|+||+++...+...+.++|+++|..++++|+ |. 
T Consensus         4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~-m~-   81 (287)
T COG0788           4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFG-MD-   81 (287)
T ss_pred             CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhC-ce-
Confidence            4578999999999999999999999999999999999977779999999999987644789999999999999998 55 


Q ss_pred             eeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeC-CCCCc--hH
Q 024345          119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE--RE  195 (269)
Q Consensus       119 ~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~-~~~~~--~e  195 (269)
                       |++..+..++||++|+|+.+|||.+||.+|+.|+|+++|++|||||++     ....++++|||++.++ .++++  .|
T Consensus        82 -~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~e~E  155 (287)
T COG0788          82 -WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKAEAE  155 (287)
T ss_pred             -eEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcchHHH
Confidence             677889999999999999999999999999999999999999999975     6899999999999999 55543  46


Q ss_pred             HHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          196 EELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       196 ~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++++++++  ++|++|||+|||||+   +++|++++||     ||+||||+|.|++||++|+++|+|.+|+|.||+|.
T Consensus       156 ~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iIN-----IHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~  228 (287)
T COG0788         156 ARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIIN-----IHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTA  228 (287)
T ss_pred             HHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEE-----ecccccccCCCCChHHHHHhcCCeEeeeeeeeccC
Confidence            78899998  899999999999999   9999999999     99999999999999999999999999999999985

>PLN02828 formyltetrahydrofolate deformylase

Probab=100.00  E-value=1.2e-51  Score=376.97  Aligned_cols=204  Identities=64%  Similarity=1.057  Sum_probs=187.5

Q ss_pred             HHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee-eeeecCCCCCeeEEEEEeC
Q 024345           59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS-VVRVPDIDPKYKVAVLASK  137 (269)
Q Consensus        59 VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~-~~~~~~~~~~~riav~~Sg  137 (269)
                      ||++|+++|+||.+++|+.+..+|.|+||++++.++...+.++|+++|.+++++++ |.| .|+++..++++|||||+||
T Consensus         1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~riavlvSg   79 (268)
T PLN02828          1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFK-ALKSVVRVPGLDPKYKIAVLASK   79 (268)
T ss_pred             CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcC-CcceEEEEccCCCCcEEEEEEcC
Confidence            58999999999999999988889999999999976323568999999999999998 544 8999999999999999999


Q ss_pred             CchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCchHHHHHHHhccCCEEEEEeccee
Q 024345          138 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQNTDFLVLARYMQV  216 (269)
Q Consensus       138 ~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~~e~~l~~~l~~~Dlivla~y~~i  216 (269)
                      +||||++|+++++.|+++++|++||||+++.+++++.++|+++|||+++++.+ .+++|+++++.++++|++|+||||||
T Consensus        80 ~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~I  159 (268)
T PLN02828         80 QDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQI  159 (268)
T ss_pred             CChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehHh
Confidence            99999999999999999999999999997756789999999999999988843 34456678888889999999999999


Q ss_pred             ee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          217 NR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       217 l~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      |+   ++.|++|+||     +||||||+|+|++|++||+++|++++|+|+||||+
T Consensus       160 L~~~~l~~~~~riIN-----IHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~  209 (268)
T PLN02828        160 LSGNFLKGYGKDIIN-----IHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTE  209 (268)
T ss_pred             CCHHHHhhccCCEEE-----ecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcC
Confidence            99   9999999999     99999999999999999999999999999999986

>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

Probab=100.00  E-value=6e-39  Score=278.90  Aligned_cols=132  Identities=25%  Similarity=0.317  Sum_probs=124.6

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCC----chHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~----~~e~~l~~~l~-  203 (269)
                      +||+||+||+|+||++|+++++.|.++++|++|+||+   ++|+++++|+++|||.+.++++..    .+|+++.+.++ 
T Consensus         1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~   77 (200)
T COG0299           1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE   77 (200)
T ss_pred             CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999   799999999999999999886642    24688888888 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|||||||||+   +++|++++||     +||||||+|+|.+.+++|+++|++++||||||||+
T Consensus        78 ~~~dlvvLAGyMrIL~~~fl~~~~grIlN-----IHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e  141 (200)
T COG0299          78 YGPDLVVLAGYMRILGPEFLSRFEGRILN-----IHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTE  141 (200)
T ss_pred             cCCCEEEEcchHHHcCHHHHHHhhcceEe-----cCcccccCCCCchHHHHHHHcCCCccCcEEEEEcc
Confidence             899999999999999   9999999999     99999999999999999999999999999999996

>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

Probab=100.00  E-value=1.7e-33  Score=246.06  Aligned_cols=132  Identities=20%  Similarity=0.338  Sum_probs=121.4

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC----CchHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~e~~l~~~l~-  203 (269)
                      +|||||+||+|+|+++++++++++.++++|++||+|+   +++++.++|+++|||+++++.+.    ..+|+++.+.++ 
T Consensus         1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~   77 (190)
T TIGR00639         1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA   77 (190)
T ss_pred             CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            5899999999999999999999999999999999999   57899999999999999876332    123567888887 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|+++||+|++   ++.|+.|+||     +||||||+|||.+|++||+.+|+++||+|+|+||+
T Consensus        78 ~~~D~iv~~~~~~il~~~~l~~~~~~~iN-----iHpslLP~yrG~~p~~~ai~~g~~~tGvTih~v~~  141 (190)
T TIGR00639        78 HEVDLVVLAGFMRILGPTFLSRFAGRILN-----IHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDE  141 (190)
T ss_pred             cCCCEEEEeCcchhCCHHHHhhccCCEEE-----EeCCcccCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence             899999999999999   9999999999     99999999999999999999999999999999986

In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.

>PLN02331 phosphoribosylglycinamide formyltransferase

Probab=100.00  E-value=3.8e-33  Score=246.92  Aligned_cols=131  Identities=18%  Similarity=0.280  Sum_probs=118.1

Q ss_pred             eEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC----CchHHHHHHHhc--
Q 024345          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--  203 (269)
Q Consensus       130 riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~e~~l~~~l~--  203 (269)
                      ||+||+||+|+||++|++++++|.++++|++||||+   ++++++++|+++|||+++++.+.    ..+++++.+.++  
T Consensus         1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (207)
T PLN02331          1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA   77 (207)
T ss_pred             CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence            799999999999999999999999999999999999   68999999999999999987432    123567788887  


Q ss_pred             cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCC----cHHHHH-HHcCCCeeeEEEEEecc
Q 024345          204 NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGI----NISLSS-FDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 ~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~----~p~~~A-~~~G~~~tG~Tvh~v~~  268 (269)
                      ++|++|+++||++++   ++.|+.|+||     +||||||+|||.    .|++|+ +.+|+++||+|+|+||+
T Consensus        78 ~~Dliv~agy~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~  145 (207)
T PLN02331         78 GVDFVLLAGYLKLIPVELVRAYPRSILN-----IHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDE  145 (207)
T ss_pred             CCCEEEEeCcchhCCHHHHhhCCCCEEE-----EeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECC
Confidence            899999999999999   9999999999     999999999995    577776 66999999999999986

>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-33  Score=241.47  Aligned_cols=134  Identities=21%  Similarity=0.261  Sum_probs=123.5

Q ss_pred             CCeeEEEEEeCCchHHHHHHHhhhcCCC--CceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C---chHHHHHH
Q 024345          127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLE  200 (269)
Q Consensus       127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l--~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~e~~l~~  200 (269)
                      ++.|+++++||.|+||++|+++++.|.+  ++.|+.||||+   .++..+++|+++|||+.++|.+. .   ..+.++.+
T Consensus         5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~   81 (206)
T KOG3076|consen    5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE   81 (206)
T ss_pred             cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence            6789999999999999999999999999  79999999999   78999999999999999998642 1   23466776


Q ss_pred             Hhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          201 LVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       201 ~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      .+.  ++|++|||||||||+   ++.|+.++||     |||||||+|+|.+++++|+++|++.+|||+||++|
T Consensus        82 ~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiN-----IHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~E  149 (206)
T KOG3076|consen   82 VLLELGTDLVCLAGYMRILSGEFLSQLPKRIIN-----IHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIE  149 (206)
T ss_pred             HHHHhCCCEEEehhhHHHcCHHHHhhcccceEe-----cccccccccCCchHHHHHHHhccccccceEEEehh
Confidence            665  999999999999999   9999999999     99999999999999999999999999999999987

>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed

Probab=100.00  E-value=1e-32  Score=242.84  Aligned_cols=133  Identities=24%  Similarity=0.335  Sum_probs=121.3

Q ss_pred             CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C---chHHHHHHHhc
Q 024345          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ  203 (269)
Q Consensus       128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~e~~l~~~l~  203 (269)
                      |+|||||+||+|+|+++++++++++.+.++|++||||+   +++.+.++|+++|||+++++... .   .+++++.+.++
T Consensus         1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~   77 (200)
T PRK05647          1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD   77 (200)
T ss_pred             CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence            58999999999999999999999998889999999998   57889999999999999877322 1   23567788786


Q ss_pred             --cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 --NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 --~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                        ++|++|+++|++|++   ++.|+.|+||     +||||||+|||.+|++||+.+|++++|+|+|+||+
T Consensus        78 ~~~~D~iv~~~~~~ii~~~~l~~~~~~~iN-----iHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~  142 (200)
T PRK05647         78 AYQPDLVVLAGFMRILGPTFVSAYEGRIIN-----IHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDE  142 (200)
T ss_pred             HhCcCEEEhHHhhhhCCHHHHhhccCCEEE-----EeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence              899999999999999   9999999999     99999999999999999999999999999999986

>PLN02285 methionyl-tRNA formyltransferase

Probab=99.97  E-value=8.3e-31  Score=246.77  Aligned_cols=139  Identities=14%  Similarity=0.135  Sum_probs=119.5

Q ss_pred             CCCCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchH
Q 024345          125 IDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENERE  195 (269)
Q Consensus       125 ~~~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e  195 (269)
                      .++++||+||||+.+  +||++|+++.+.|..+++|++|||++|+.       ..+++.++|+++|||++++.......+
T Consensus         3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~   82 (334)
T PLN02285          3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE   82 (334)
T ss_pred             CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence            468899999999995  99999999888888789999999998752       125799999999999654321111224


Q ss_pred             HHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          196 EELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       196 ~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +++++.++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        83 ~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iN-----iHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~  155 (334)
T PLN02285         83 EDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVN-----IHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVR  155 (334)
T ss_pred             HHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEE-----EecccccCCCCcCHHHHHHHcCCCcEEEEEEEECC
Confidence            45667676  899999999999999   9999999999     99999999999999999999999999999999986

>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group

Probab=99.96  E-value=1.4e-29  Score=218.84  Aligned_cols=132  Identities=20%  Similarity=0.174  Sum_probs=112.9

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CC---chHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~---~~e~~l~~~l~-  203 (269)
                      |||+||+||++++++.++++++++...+++++|+|++   +......++.+.++|...+... ..   ..++++.+.++ 
T Consensus         1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (181)
T PF00551_consen    1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNP---DKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES   77 (181)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESS---TTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccc---cccccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence            7999999999999999999998887677899999999   4567789999999999887632 21   23567888887 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|+++|+++++   ++.|+.|+||     +||||||+|||++|++||+.+|++++|+|+|++|+
T Consensus        78 ~~~Dl~v~~~~~~il~~~~l~~~~~~~iN-----iHpslLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~  141 (181)
T PF00551_consen   78 LNPDLIVVAGYGRILPKEFLSIPPYGIIN-----IHPSLLPKYRGASPIQWAILNGEKETGVTVHFMDE  141 (181)
T ss_dssp             TT-SEEEESS-SS---HHHHHHSTTSEEE-----EESSSTTTTBSSTHHHHHHHHTSSEEEEEEEEE-S
T ss_pred             hccceeehhhhHHHhhhhhhhcccccEEE-----EeecCCccCCCcchhhhhhcCCcceeeeEEEEecc
Confidence             999999999999999   9999999999     99999999999999999999999999999999986

Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....

>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.5e-28  Score=228.35  Aligned_cols=127  Identities=19%  Similarity=0.174  Sum_probs=111.9

Q ss_pred             CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHH
Q 024345          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL  198 (269)
Q Consensus       128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l  198 (269)
                      ++||+|||+.++  .+|++|++   .|   ++|++|+|.+|+.       ..++|.++|.++|||+++ |.+.+  ++++
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~---~~---~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~l~--~~e~   71 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIE---AG---HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEKLN--DPEF   71 (307)
T ss_pred             CcEEEEEcCchhhHHHHHHHHh---CC---CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-cccCC--cHHH
Confidence            589999999997  78999988   34   8999999999872       237899999999999887 43322  2256


Q ss_pred             HHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          199 LELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       199 ~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      .+.++  ++|++|+++|++||+   |+.++.||||     +||||||+|||++|++|||.+|+++||+|+|+||+
T Consensus        72 ~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iN-----vH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~  141 (307)
T COG0223          72 LEELAALDPDLIVVVAYGQILPKEILDLPPYGCIN-----LHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDE  141 (307)
T ss_pred             HHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEE-----ecCccCccccCccHHHHHHHcCCcccceEEEEccc
Confidence            77776  899999999999999   9999999999     99999999999999999999999999999999986

>PRK06988 putative formyltransferase; Provisional

Probab=99.94  E-value=1.4e-26  Score=216.29  Aligned_cols=127  Identities=19%  Similarity=0.167  Sum_probs=109.1

Q ss_pred             CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCC----ChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (269)
Q Consensus       128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~  201 (269)
                      ||||+||||+..  .+|++|++.   |   ++|++|+|++|+..    .+++.++|+++|||++... +.  .++++.+.
T Consensus         2 ~mkIvf~Gs~~~a~~~L~~L~~~---~---~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~-~~--~~~~~~~~   72 (312)
T PRK06988          2 KPRAVVFAYHNVGVRCLQVLLAR---G---VDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA-DP--NDPELRAA   72 (312)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhC---C---CCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc-cC--CCHHHHHH
Confidence            479999999984  799999873   4   68999999986521    2579999999999998733 11  23456667


Q ss_pred             hc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          202 VQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       202 l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++  ++|++|+++|++|++   ++.++.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        73 l~~~~~Dliv~~~~~~iip~~il~~~~~g~iN-----iHpslLP~yRG~~pi~~ai~~g~~~tGvTih~~~~  139 (312)
T PRK06988         73 VAAAAPDFIFSFYYRHMIPVDLLALAPRGAYN-----MHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVA  139 (312)
T ss_pred             HHhcCCCEEEEehhccccCHHHHhcCCCCEEE-----eeCccccCCCCcCHHHHHHHcCCCceEEEEEEECC
Confidence            76  899999999999999   8889999999     99999999999999999999999999999999986

>TIGR00460 fmt methionyl-tRNA formyltransferase

Probab=99.93  E-value=4.4e-26  Score=212.83  Aligned_cols=126  Identities=14%  Similarity=0.146  Sum_probs=108.0

Q ss_pred             eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHHH
Q 024345          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL  199 (269)
Q Consensus       129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~  199 (269)
                      |||+||||+..  .+|++|++   .|   ++|++|+|++|+.       ..+++.++|+++|||++.....  + +++.+
T Consensus         1 mkIvf~Gs~~~a~~~L~~L~~---~~---~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~--~-~~~~~   71 (313)
T TIGR00460         1 LRIVFFGTPTFSLPVLEELRE---DN---FEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ--R-QLEEL   71 (313)
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CC---CcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCC--C-cHHHH
Confidence            69999999986  78888876   34   7899999998651       1357999999999999985422  1 22455


Q ss_pred             HHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          200 ELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       200 ~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +.++  ++|++|+++|++||+   ++.++.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iN-----iHpSlLP~yRG~~pi~wai~~G~~~tGvTih~~~~  140 (313)
T TIGR00460        72 PLVRELKPDVIVVVSFGKILPKEFLDLFPYGCIN-----VHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVP  140 (313)
T ss_pred             HHHHhhCCCEEEEccchhhCCHHHHhhccCCEEE-----ecCccccCCCCccHHHHHHHCCCCeEEEEEEEEcc
Confidence            5565  999999999999999   8999999999     99999999999999999999999999999999985

The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=99.93  E-value=6.1e-26  Score=211.36  Aligned_cols=126  Identities=19%  Similarity=0.187  Sum_probs=108.2

Q ss_pred             eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHHH
Q 024345          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL  199 (269)
Q Consensus       129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~  199 (269)
                      |||+||||+..  .+|+.|+++   +   +++++|+|.+++.       ..+++.++|+++|||++... +.+  +.++.
T Consensus         1 mkIvf~G~~~~a~~~L~~L~~~---~---~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~-~~~--~~~~~   71 (309)
T PRK00005          1 MRIVFMGTPEFAVPSLKALLES---G---HEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE-KLR--DPEFL   71 (309)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---C---CcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC-CCC--CHHHH
Confidence            69999999986  799988863   3   6899999987641       13579999999999998743 211  34566


Q ss_pred             HHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          200 ELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       200 ~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +.++  ++|++|+++|+++|+   ++.++.|+||     +||||||+|||++|++||+.+|++++|+|+|+||+
T Consensus        72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iN-----iHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~  140 (309)
T PRK00005         72 AELAALNADVIVVVAYGQILPKAVLDIPRLGCIN-----LHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDE  140 (309)
T ss_pred             HHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEE-----EeCcccccCCCccHHHHHHHcCCCeEEEEEEEECC
Confidence            6666  999999999999999   9999999999     99999999999999999999999999999999986

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.90  E-value=7.4e-24  Score=214.60  Aligned_cols=126  Identities=19%  Similarity=0.108  Sum_probs=108.1

Q ss_pred             eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC----CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (269)
Q Consensus       129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l  202 (269)
                      |||+||+|+..  .+|++|++   .|   ++|++|+|.+|+.    ..+++.++|+++|||++.... .+  +++.++.+
T Consensus         1 mkivf~g~~~~a~~~l~~L~~---~~---~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~-~~--~~~~~~~l   71 (660)
T PRK08125          1 MKAVVFAYHDIGCVGIEALLA---AG---YEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPED-VN--HPLWVERI   71 (660)
T ss_pred             CeEEEECCCHHHHHHHHHHHH---CC---CcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCC-CC--cHHHHHHH
Confidence            69999999986  78888886   34   7899999988651    124799999999999998542 11  33456666


Q ss_pred             c--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          203 Q--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       203 ~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +  +||++|+++|++||+   ++.++.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        72 ~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN-----~H~slLP~yRG~~p~~wai~~g~~~~GvTi~~~~~  137 (660)
T PRK08125         72 RELAPDVIFSFYYRNLLSDEILQLAPAGAFN-----LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK  137 (660)
T ss_pred             HhcCCCEEEEccccccCCHHHHhhcCCCEEE-----EeCCcccCCCCcCHHHHHHHcCCCcEEEEEEEECC
Confidence            6  999999999999999   8999999999     99999999999999999999999999999999985

>PRK07579 hypothetical protein; Provisional

Probab=99.86  E-value=1.4e-21  Score=176.80  Aligned_cols=118  Identities=15%  Similarity=0.126  Sum_probs=96.9

Q ss_pred             CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHH-hCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN  204 (269)
Q Consensus       128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~-~~gIP~~~~~~~~~~~e~~l~~~l~~  204 (269)
                      |+||.|++...-  .|++.|+++  .+.+.+++.|+.++.+.        ++. -+++|.+.++.     .+.+.+++.+
T Consensus         1 ~k~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~   65 (245)
T PRK07579          1 MKTILVLTDNVHAHALAVDLIAR--KNDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLDV-----AERVAEIVER   65 (245)
T ss_pred             CceEEEEcccHHHHHHHHHHHhh--ccCcceEEEEeccCCcc--------cccccccccccCcch-----hhhHHhhhcC
Confidence            589999999883  899999987  45667999999988742        222 45666555541     2346677779


Q ss_pred             CCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          205 TDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       205 ~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +|++|+++|++||+   ++.+  ++||     +||||||+|||++|++||+.+|++ ||+|+|+||+
T Consensus        66 ~DliVvvayg~ilp~~iL~~~--~~iN-----iHpSLLP~yRGaaPi~wAI~nGe~-tGvTih~mde  124 (245)
T PRK07579         66 YDLVLSFHCKQRFPAKLVNGV--RCIN-----IHPGFNPYNRGWFPQVFSIINGLK-IGATIHEMDE  124 (245)
T ss_pred             CCEEEEchhhccCCHHHHhhC--CEEE-----EcCCcCCCCCCcCHHHHHHHCCCe-EEEEEEEEcC
Confidence            99999999999999   7766  6999     999999999999999999999985 9999999986

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.69  E-value=1.3e-16  Score=119.97  Aligned_cols=71  Identities=15%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      ++++++.|+||||||++||++|+++|+||+|++++..  ++.|+|++.++.|.  .+.++|+++|+++++++++.
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~   71 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLT   71 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCE
Confidence            4789999999999999999999999999999999874  89999999999884  47899999999999999873

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=99.65  E-value=1.5e-16  Score=122.88  Aligned_cols=75  Identities=20%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      +++++|||+|+|||||||+||++|+++|+||+|++|+.+  .|.|+|.+.|+.|++..+..+++++|++-++++|+.
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~   75 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD   75 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence            468999999999999999999999999999999999877  899999999999977899999999999999999975

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=99.65  E-value=4.5e-16  Score=116.13  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      +++|+|+||||||++||++|+++||||+++++...  .+.|.|.+.+++|+ +.+.++|+++|+++++++++
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l   69 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGL   69 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCc
Confidence            47999999999999999999999999999988755  68999999999997 67899999999999999986

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=99.65  E-value=8.4e-16  Score=114.06  Aligned_cols=72  Identities=35%  Similarity=0.644  Sum_probs=65.4

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      +|++.|+||||||++||++|+++|+||.+++++.....+.|.|+++++.|+.+.+.++|+++|+++++++++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~   72 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDM   72 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence            589999999999999999999999999999998655678999999999996236899999999999999974

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.6e-16  Score=146.13  Aligned_cols=125  Identities=11%  Similarity=0.023  Sum_probs=96.1

Q ss_pred             CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCC-------CCChhHHHHHHhCCCCeEEeCCCCCchHHH
Q 024345          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDR-------GPNSHVIRFLERHGIPYHYLCAKENEREEE  197 (269)
Q Consensus       127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~-------~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~  197 (269)
                      .++++-+++|...  ..++.++..       .+.+.+++.++.       ...+|+...|...|+++..+-...    +.
T Consensus         5 ~~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~----k~   73 (338)
T KOG3082|consen    5 IPLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGW----KN   73 (338)
T ss_pred             cccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChh----hc
Confidence            4567888888886  455666653       344556666543       123677788888888887654211    11


Q ss_pred             HHHHhc-cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEec
Q 024345          198 LLELVQ-NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRT  267 (269)
Q Consensus       198 l~~~l~-~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~  267 (269)
                      ..++.. ++|++|.|.|+++++   |+.+++|+||     +||||||+|||++|+++|+++|+..||||+..++
T Consensus        74 ~~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iN-----VHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~  142 (338)
T KOG3082|consen   74 FHDLMRPDDQLAITASFGRLLPFKLLNQLPYGGIN-----VHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTID  142 (338)
T ss_pred             cccccCCCcceEEEeehhccCcHHHHhhCCcceee-----cChhhcccccCcchHHHHHhcCCcccceEEEEec
Confidence            113344 799999999999999   9999999999     9999999999999999999999999999999886

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=99.62  E-value=2.6e-15  Score=115.19  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~  120 (269)
                      ++++++.|+||||||++||++|+++||||++++++..  ++.|+|++++++|+.+.+.++|+++|+++++++++ +|.+
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l-~~~i   76 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV-KIRI   76 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC-EEEE
Confidence            4789999999999999999999999999999999764  78999999999994256799999999999999995 6554

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=99.59  E-value=3.3e-15  Score=114.74  Aligned_cols=78  Identities=21%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      |.++++++.|+||||||++||++|+++|+||.++++...  .+.|.+++.+++|..+.+.+.|+++|.++++++++ ++.
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~-~~~   77 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGV-KIR   77 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC-EEE
Confidence            458999999999999999999999999999999999764  78999999999985346789999999999999995 554


Q ss_pred             e
Q 024345          120 V  120 (269)
Q Consensus       120 ~  120 (269)
                      +
T Consensus        78 ~   78 (90)
T PRK00194         78 I   78 (90)
T ss_pred             E
Confidence            4

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.58  E-value=1.3e-14  Score=108.69  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~----~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      ++++.|+||||||++||++|+++|+||.++++....    ..+.|+|++++.+|+ +.+.++|+++|+.+++++++ ++.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~-~~~   78 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNV-DIS   78 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcc-eEE
Confidence            478999999999999999999999999999997543    347999999999996 78899999999999999984 554


Q ss_pred             e
Q 024345          120 V  120 (269)
Q Consensus       120 ~  120 (269)
                      +
T Consensus        79 ~   79 (81)
T cd04869          79 L   79 (81)
T ss_pred             e
Confidence            3

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=99.57  E-value=6e-15  Score=110.60  Aligned_cols=71  Identities=20%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      ++++||++|+||||||++||+.|+++||||+|+++...  ++.|.+.+.++.|+ + +.++|+++|.++++++|+
T Consensus         1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~-~-~~~~l~~~L~~l~~~~~l   71 (76)
T PF13740_consen    1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPE-D-SLERLESALEELAEELGL   71 (76)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESH-H-HHHHHHHHHHHHHHHTT-
T ss_pred             CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCc-c-cHHHHHHHHHHHHHHCCc
Confidence            36899999999999999999999999999999999765  79999999999995 3 789999999999999996

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.57  E-value=1.3e-14  Score=127.27  Aligned_cols=92  Identities=10%  Similarity=0.004  Sum_probs=75.7

Q ss_pred             cccccceecCC-CCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC--CC--CeEEEEEEEEeCCCCCC
Q 024345           24 SLKFPGEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KK--NVFYSRSEFIFDPIKWP   98 (269)
Q Consensus        24 ~~~~~~~~~~~-~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~--~~--g~F~m~~~v~~p~~~~~   98 (269)
                      .|.+.+.+... .......+|.++|+|+||||||++||++|+++|+||+++++...+  ++  .+|.|++++.+|+ +.+
T Consensus        76 ~L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~  154 (190)
T PRK11589         76 DLLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQD  154 (190)
T ss_pred             CeEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCC
Confidence            45566655322 233344479999999999999999999999999999999998643  23  4999999999997 888


Q ss_pred             HHHHHHHHHhhhhhhccc
Q 024345           99 REQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        99 ~~~L~e~L~~la~el~l~  116 (269)
                      .++|+++|+++|+++++.
T Consensus       155 ~~~L~~~l~~l~~eL~vd  172 (190)
T PRK11589        155 AANIEQAFKALCTELNAQ  172 (190)
T ss_pred             HHHHHHHHHHHHHHhCce
Confidence            999999999999999973

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.50  E-value=2.4e-13  Score=119.21  Aligned_cols=105  Identities=13%  Similarity=0.020  Sum_probs=81.5

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~  118 (269)
                      .+++++||++|+||||||++||+.|+++||||+|+++...  +|.|+|++.++.|.  ...+.|+++|..+++++++.. 
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~--~~~~~le~~L~~l~~~~~L~i-   79 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSW--NAITLIESTLPLKGAELDLLI-   79 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCCh--hHHHHHHHHHHhhhhhcCeEE-
Confidence            4589999999999999999999999999999999999654  89999999998874  378999999999998887642 


Q ss_pred             eeeec-----CCC-CCeeEEEEEeCCchHHHHHHHh
Q 024345          119 VVRVP-----DID-PKYKVAVLASKQEHCLVDFLYG  148 (269)
Q Consensus       119 ~~~~~-----~~~-~~~riav~~Sg~g~~l~~ll~~  148 (269)
                      .++..     ... .++.|-+.|..+..-..++-+.
T Consensus        80 ~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~  115 (190)
T PRK11589         80 VMKRTTARPRPAMPATVWVQVEVADSPHLIERFTAL  115 (190)
T ss_pred             EEEeccccccccCCceEEEEEEECCCCCHHHHHHHH
Confidence            33221     111 1367777777775444444433

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.32  E-value=3.8e-12  Score=109.11  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=76.9

Q ss_pred             ccccceecCCCC-CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc--C--CCCeEEEEEEEEeCCCCCCH
Q 024345           25 LKFPGEPIESSV-SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--E--KKNVFYSRSEFIFDPIKWPR   99 (269)
Q Consensus        25 ~~~~~~~~~~~~-~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~--~--~~g~F~m~~~v~~p~~~~~~   99 (269)
                      |.+-....+.-. +....+|++.|.|.||||||+++|++|.+||+||+++++...  +  ...+|.+.+.+.+|. +.+.
T Consensus        74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i  152 (176)
T COG2716          74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSI  152 (176)
T ss_pred             eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcH
Confidence            344444444444 778899999999999999999999999999999999998742  3  345999999999997 8999


Q ss_pred             HHHHHHHHhhhhhhcc
Q 024345          100 EQMDEDFFKLSKMFNA  115 (269)
Q Consensus       100 ~~L~e~L~~la~el~l  115 (269)
                      +.|+++|+++|+++++
T Consensus       153 ~~l~~~f~al~~~L~v  168 (176)
T COG2716         153 SALRDAFEALCDELNV  168 (176)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999999986

>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]

Probab=98.95  E-value=7.2e-10  Score=107.77  Aligned_cols=130  Identities=15%  Similarity=0.051  Sum_probs=97.4

Q ss_pred             eeEEEEEeCCchHHHHHHHhhh-cCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeC--CCCCchHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC--AKENEREEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~-~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~--~~~~~~e~~l~~~l~-  203 (269)
                      ||||+.+-.-+.  ++.....+ +|   ++|+.|+|-+|+. ..-+..--|++-|+|+...+  ++.+..-.+.+++.+ 
T Consensus         1 mkiaiigqs~fg--~~vy~~lrk~g---heiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~   75 (881)
T KOG2452|consen    1 MKIAVIGQSLFG--QEVYCHLRKEG---HEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQA   75 (881)
T ss_pred             CeeEEechhhhh--HHHHHHHHhcC---ceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHh
Confidence            688888765431  22222222 44   7999999987752 22345556889999999755  222221245666666 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++++=|+--..|.+|   ++.+..|-|=     .|||+||++||+++++|.+..|+++.|.++++.|.
T Consensus        76 ~gaelnvlpfcsqfip~ei~~ap~~~sii-----yhps~lp~hrgasainwtli~gd~~~g~sifwadd  139 (881)
T KOG2452|consen   76 LGAELNVLPFCSQFIPMEIISAPRHGSII-----YHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADD  139 (881)
T ss_pred             hcccccccchhhhccchhhcccccCCcee-----eccccCccccCccccceEEEeccccCceEEEeecC
Confidence             899999999999999   7778888888     99999999999999999999999999999999873

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.95  E-value=6.8e-10  Score=85.14  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=58.0

Q ss_pred             EEEEEcCC-CcChHHHHHHHHHhCCCeEeEeeeecc-------CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        44 iItV~G~D-rpGIVa~VS~~La~~giNI~dl~~~~~-------~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      ++||+|.| ++|+|++||++|+++|+||.++++...       ...+...|.++++.|  +.+.+.|+++|.++++++|+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~--~~~~~~lr~~L~~la~elgv   78 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ--PADLEALRAALLELASELNV   78 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC--CCCHHHHHHHHHHHhcccCc
Confidence            58999999 999999999999999999999998411       011355667777765  46899999999999999995

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=98.71  E-value=7e-08  Score=83.02  Aligned_cols=137  Identities=15%  Similarity=0.117  Sum_probs=89.2

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeee
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR  121 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~  121 (269)
                      .++|+++|.||||++..+++..++.||||+++...  ..++.|+..+.+..|.+  ..+.|++.|..+..+.|+. ..|.
T Consensus         5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~-v~m~   79 (176)
T COG2716           5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLL-VVMK   79 (176)
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeE-EEEe
Confidence            38999999999999999999999999999998773  45789999999998852  5799999999999988874 3444


Q ss_pred             ecCCCC------CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCC--CCChhHHHHHHhCCCCeE
Q 024345          122 VPDIDP------KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPNSHVIRFLERHGIPYH  185 (269)
Q Consensus       122 ~~~~~~------~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~--~~~~~v~~~a~~~gIP~~  185 (269)
                      .+...+      ++.+-+-+-.+...++++-+......  .+|.-..|..-.  ..+++..-..-...+|.-
T Consensus        80 rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~--inie~L~~~~~~a~~s~~~lfha~it~~lPa~  149 (176)
T COG2716          80 RTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHG--INIENLVSRTYPAPGSSAPLFHAQITARLPAN  149 (176)
T ss_pred             ecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcC--CchhhceeeeeecCCCCccceehhhhccCCCc
Confidence            433222      23444444444455555544332332  344333443211  123334444444555544

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.70  E-value=8.7e-08  Score=67.92  Aligned_cols=64  Identities=20%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCC-eEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN-VFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g-~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      |.++|.++||||++++|+++|+++|+||..+.+.....+. .+.+....+    ..+.+.+.++|+++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~   65 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD----EEDLEKLLEELEALP   65 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE----GHGHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC----CCCHHHHHHHHHccc
Confidence            5789999999999999999999999999999997543222 222233232    235677777777764

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=98.59  E-value=1.5e-07  Score=81.61  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      +.++++.+.|+||++++||++|+++|+||+++++.....+|.-.  +.+.+|+.....++|++.|+++++.++..
T Consensus         2 ~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr--~TIvv~~~~~~ieqL~kQL~KLidVl~V~   74 (174)
T CHL00100          2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISR--ITMVVPGDDRTIEQLTKQLYKLVNILKVQ   74 (174)
T ss_pred             eEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccE--EEEEEECCHHHHHHHHHHHHHHhHhhEEE
Confidence            57899999999999999999999999999999996544455444  44445542223899999999999999764

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.47  E-value=1e-06  Score=65.85  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=52.0

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      ...++.|.|.+.||||++++|++++++.|+||.+++.......+.+.+.+.+.+++    .++|..-+.+|-
T Consensus         3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~   70 (80)
T PF13291_consen    3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR   70 (80)
T ss_dssp             --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred             cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence            45788999999999999999999999999999999997532267888899999884    566666555543

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.34  E-value=2.5e-06  Score=63.50  Aligned_cols=46  Identities=11%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~   91 (269)
                      +|+|.|+||||++++|+++|+++|+||.+.+....  ++.+...+.|.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~   47 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR   47 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence            68999999999999999999999999999888643  67777777775

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=98.26  E-value=9.7e-06  Score=67.14  Aligned_cols=75  Identities=19%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      ..+.-..+.+++.+.|+||++++|++.|+++|+||.++++.....++.+.+.+.+++++...+.+++.+.|.++.
T Consensus        50 ~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~  124 (136)
T PRK08577         50 ALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLE  124 (136)
T ss_pred             CCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCC
Confidence            445557999999999999999999999999999999998864433567778888998852145566666666654

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=98.09  E-value=1.5e-05  Score=60.35  Aligned_cols=68  Identities=12%  Similarity=0.088  Sum_probs=52.8

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      ++++++...++||++++|++.++.+|.||+.++.......+...|.+.+...  +...+++...|+++-+
T Consensus         2 ~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~KLid   69 (76)
T PRK06737          2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKKLIN   69 (76)
T ss_pred             eEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCcC
Confidence            6789999999999999999999999999999998654455666776766532  3356667777766543

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.04  E-value=3.9e-05  Score=54.75  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~   94 (269)
                      .++|.|+|+||++++++++|+++|+||.++.+...  .+.....+.+..|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence            57899999999999999999999999999988643  33555666666554

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.02  E-value=3e-05  Score=54.95  Aligned_cols=64  Identities=23%  Similarity=0.122  Sum_probs=47.5

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      .+.+.+.|+||+++++++.|+++|+||..+++...+.++.+.+.+++..++  ...+++.++|+++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~   65 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLNKL   65 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHhCC
Confidence            477889999999999999999999999999885332456666777777541  2445555555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=98.01  E-value=2.3e-05  Score=56.61  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      +.+++..+|+||.++++++.|+++|+||..+.+...+..+.-.+++.++.++   +.+.+.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence            5788999999999999999999999999999765432111223345555442   45666666665

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=98.00  E-value=4e-05  Score=58.02  Aligned_cols=68  Identities=7%  Similarity=0.102  Sum_probs=53.9

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      |+++++++...++||.+++|++.++.+|.||..++.......+.-.|.+.+.  + +...+++...|+++-
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~KL~   68 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNKLV   68 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhcCc
Confidence            4678999999999999999999999999999999996543445555666664  3 456788888777763

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.99  E-value=3e-05  Score=55.09  Aligned_cols=49  Identities=22%  Similarity=0.134  Sum_probs=37.7

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC---CCCeEEEEEEEEeC
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFD   93 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~---~~g~F~m~~~v~~p   93 (269)
                      +.|..+|+||.+++|++.++++|+||.++.+....   ..+...+.+.+.++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~   52 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR   52 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence            35788999999999999999999999999875321   13555556666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.97  E-value=3.9e-05  Score=55.92  Aligned_cols=61  Identities=15%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      +.|.++||||.+++|++.+++.|+||.++++... ..+...+.+.+.+++    .++|.+-+..+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHh
Confidence            6789999999999999999999999999987532 246777778888774    555555555543

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.96  E-value=6.8e-05  Score=53.98  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=38.9

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p   93 (269)
                      .+.|.++||||++++++++|+++|+||.++.....  ++.....+.+..+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~   49 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA   49 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence            57899999999999999999999999999988643  3444556666544

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.96  E-value=4.7e-05  Score=55.62  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~   94 (269)
                      .+.+.++|+||++++|++.|++.|+||..+++... ..+.+.+.++++..+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~   51 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTST   51 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCc
Confidence            57899999999999999999999999999988532 246777888887664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.91  E-value=4.8e-05  Score=58.62  Aligned_cols=71  Identities=10%  Similarity=0.069  Sum_probs=53.8

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      +.+|++.-.|+||++++||..|+.+|.||..++.......|.-.|.+.+...+ ....+++...|+++-+=+
T Consensus         2 k~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~KlidVi   72 (84)
T PRK13562          2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQINVL   72 (84)
T ss_pred             cEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCCccEE
Confidence            56899999999999999999999999999999986544456666777775333 334566777777665433

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.89  E-value=9.7e-05  Score=53.25  Aligned_cols=65  Identities=11%  Similarity=0.039  Sum_probs=47.6

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      |.+.+.+.|+||+++++++.|+++|+||..+.+.....++...+.+.+...    +.+++++.++++.+
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence            468899999999999999999999999999987432222555555655543    45666666666543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=97.87  E-value=0.00014  Score=53.87  Aligned_cols=64  Identities=16%  Similarity=0.104  Sum_probs=48.7

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      +.|.|.++||||+.+.++.+|+.+|.||.+.+.+.. ..|.=.=.+.|.-++ +.+.++|++++++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d~~-~~~~~~~~~~~~~   65 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTGWK-RGETAALGHALQK   65 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEecCC-ccchHHHHHHHHH
Confidence            468899999999999999999999999999877643 234322245555443 5677888888876

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.86  E-value=8.5e-05  Score=58.60  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=55.1

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      +..+.+.+|++.-.|+||++++||..|+.+|.||+.++.......+.=.|.+.+.  + +...+++...|+++-+=..
T Consensus         3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KLidVik   77 (96)
T PRK08178          3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKLEDVLK   77 (96)
T ss_pred             CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCCcCEEE
Confidence            4457789999999999999999999999999999999885332333334444444  3 3467777777777654443

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.84  E-value=7.3e-05  Score=53.96  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=44.4

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      +.+.++|+||+++++++.|+++|+||.++........+...+.+.++.+.    ..++.++|.++
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~l~~~   62 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV----PDEVLEELRAL   62 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC----CHHHHHHHHcC
Confidence            46789999999999999999999999998764322345656666666542    34566656554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=97.80  E-value=0.00019  Score=50.99  Aligned_cols=63  Identities=22%  Similarity=0.243  Sum_probs=44.9

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      .+++.++|+||+++++++.|+++++||.++.+... .++.+.+.+.++-.   ...+++.++|++..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~~L~~~~   64 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV---GDIEELVEELRSLP   64 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc---ccHHHHHHHHhCCC
Confidence            57889999999999999999999999999887533 23555555544422   24455556565543

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.76  E-value=0.00012  Score=50.20  Aligned_cols=49  Identities=18%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~   94 (269)
                      +.+.++|+||+++++++.|+++++||.++..... ..+...+.+.+..+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~   49 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD   49 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence            4678999999999999999999999999987532 235555677777764

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=97.74  E-value=0.00018  Score=60.69  Aligned_cols=66  Identities=20%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             ccccccceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 024345           23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (269)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~   94 (269)
                      |..=+++.+.     .....+.|++.+.|+||++++|.+.|+++|+||..++|.. +..|...+.+.++..+
T Consensus        55 kd~vf~~~~~-----~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~  120 (147)
T PRK04435         55 KDYVFPFDEM-----VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSS  120 (147)
T ss_pred             CCeeECcccc-----CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCC
Confidence            4455777665     5668899999999999999999999999999999999864 3356677777777664

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.73  E-value=0.00019  Score=50.51  Aligned_cols=61  Identities=23%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      +.+.++|++|+++++++.|+++|+||.++........+...+.+.++  . . ..+++.+.|.++
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~--~-~-~~~~l~~~l~~~   62 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD--S-P-VPEEVLEELKAL   62 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC--C-C-CCHHHHHHHHcC
Confidence            67889999999999999999999999999885332135555555553  2 2 455666666654

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.61  E-value=0.00026  Score=60.81  Aligned_cols=70  Identities=19%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      +.++++.-.|+||..++|++.|+++|+||..+........+...+.+.++..  +...+++...|+++-+=.
T Consensus         2 ~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KLidV~   71 (161)
T PRK11895          2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKLIDVL   71 (161)
T ss_pred             eEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhccccEE
Confidence            5789999999999999999999999999999987544335666666666643  334677777777764433

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.60  E-value=0.00021  Score=52.77  Aligned_cols=58  Identities=12%  Similarity=0.142  Sum_probs=43.6

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      .|.|.+.||+|++++|++.+++.|+||..+++..  . +.  +.+++.+.+    .++|..-+.++-
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~--~-~~--i~l~i~v~~----~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP--K-GR--IYLNFPTIE----FEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec--C-Ce--EEEEeEecC----HHHHHHHHHHHh
Confidence            4778999999999999999999999999999853  2 33  567777663    455555444443

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.58  E-value=0.00056  Score=50.39  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .++|.++||||+.++++++|+++|+||.+....
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~   35 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIF   35 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEE
Confidence            578999999999999999999999999998765

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=97.56  E-value=0.00046  Score=48.70  Aligned_cols=61  Identities=23%  Similarity=0.193  Sum_probs=42.7

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      +++..+|+||+++++++.|+++|+||..+.+.....++...+.  +.+.+ . +..++.++|+++
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~-~-~~~~~i~~l~~~   62 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQ-P-IDEEVIEEIKKI   62 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCC-C-CCHHHHHHHHcC
Confidence            6789999999999999999999999999977431123333333  44443 2 455666666654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.55  E-value=0.001  Score=49.81  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      +.+.|.++||||+.++++++|+++|+||.+..-..
T Consensus         1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T   35 (76)
T cd04927           1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST   35 (76)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence            36899999999999999999999999999987753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.54  E-value=0.00035  Score=59.77  Aligned_cols=70  Identities=20%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      +++++.-.|+||..++|++.|+++|+||..+........|...|.+.++.+  +...+++...|+++-+=+.
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kli~V~~   71 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKLVDVIK   71 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcCccEEE
Confidence            689999999999999999999999999999987644335666677777653  3356777777777654443

acetohydroxyacid synthase is a synonym.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=97.54  E-value=0.0028  Score=66.53  Aligned_cols=71  Identities=13%  Similarity=-0.035  Sum_probs=55.8

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CCHHHHHHHHHhhhhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSKM  112 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~-~~~~~L~e~L~~la~e  112 (269)
                      .....|+|+|+||||++++||++|+.+|+||.+.+.+.  .+|.+..++.|.-|... ...+.++++|++....
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~  668 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDG  668 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcC
Confidence            35568999999999999999999999999999999875  57888888888754321 2346677777765433

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.49  E-value=0.0012  Score=47.67  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=43.7

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      .+++..+|+||.++++++.|+++|+||..+........+.=.+.+.++.+    +.+.+.+.|.+.
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~~   64 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRRA   64 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHHC
Confidence            57788999999999999999999999999976432222332334444432    345677776653

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.47  E-value=0.0011  Score=47.62  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      ..++|.-+|+||.+++|++.|+++|+||..+-....  .+.  ..+.+...    +.+.+.+.|.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~--~~~--~~~rl~~~----~~~~~~~~L~~   59 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT--SEF--GILRLIVS----DPDKAKEALKE   59 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec--CCC--CEEEEEEC----CHHHHHHHHHH
Confidence            357788999999999999999999999999976433  222  23333332    24566666655

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.46  E-value=0.0011  Score=48.77  Aligned_cols=66  Identities=9%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      .++|..+||||+.++|+++|+++|+||........  ++.-.-.+.+.-++ +...+  .+.++++.+.+|
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~-~~~~~--~~~~~~l~~~l~   68 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDAN-GNPVD--PKTIEAVRQEIG   68 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCC-CCcCC--HHHHHHHHHHhc
Confidence            57889999999999999999999999999877532  44322344443222 22111  134555555554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.39  E-value=0.0011  Score=48.32  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=29.4

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      +++.=+|+||.++++++.|+++|+||..+.+.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~   33 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA   33 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence            56788999999999999999999999999765

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=97.38  E-value=0.00032  Score=50.16  Aligned_cols=58  Identities=14%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      +.+.+.|+||.++++++.|+++|+||..++...  ..+...+.++++.+    ..+++-+.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence            567899999999999999999999999986632  23665666666644    34555555554

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=97.38  E-value=0.00079  Score=48.84  Aligned_cols=59  Identities=20%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        51 DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      |+||++.+|++.+..+|.||..++.......+...+.+.+..+  +...+.|...|+++-+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Klid   59 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLID   59 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCSTT
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccCC
Confidence            7899999999999999999999999764456787888888764  3467888888887643

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.36  E-value=0.0006  Score=47.26  Aligned_cols=46  Identities=22%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~   91 (269)
                      +++..+|+||.++++++.|+++|+||..+...... ++.-.+++.++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence            45788999999999999999999999999875432 34555566555

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.35  E-value=0.0018  Score=48.34  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      .+.+.-+|+||..+++.+.++++|+||..+.+.... ..+.+.++++++..   .+.+.+.+.++.+.+
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~   68 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence            456667899999999999999999999999876432 23455556666532   345667777766654

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.32  E-value=0.0017  Score=47.81  Aligned_cols=47  Identities=23%  Similarity=0.207  Sum_probs=34.9

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEE
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFI   91 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~   91 (269)
                      +.+.-+|+||..++|-+.++++|+||..+.+..... .+.|..-++++
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~   49 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE   49 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence            345568999999999999999999999998864332 34444444444

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=97.27  E-value=0.00057  Score=72.15  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC--CCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYSRSEFIFDPIKWPREQMDEDFF  107 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~--~~g~F~m~~~v~~p~~~~~~~~L~e~L~  107 (269)
                      ......+++|.|+||||++++|+++|+++|+||.+.+.....  ..+.|.++.....|..+...+.|+++|.
T Consensus       775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~  846 (850)
T TIGR01693       775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA  846 (850)
T ss_pred             CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence            335678999999999999999999999999999998887543  2347777665555532112344444443

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.22  E-value=0.0006  Score=51.45  Aligned_cols=34  Identities=9%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      -+|+|.|+||||+.++|++.|+++|++|....-.
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~   35 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID   35 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe
Confidence            3789999999999999999999999999986553

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.22  E-value=0.002  Score=48.24  Aligned_cols=34  Identities=12%  Similarity=0.078  Sum_probs=30.9

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .+|.|.++||||+.++|+++|+++|++|....-.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs   35 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS   35 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe
Confidence            4789999999999999999999999999986654

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.13  E-value=0.003  Score=40.75  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      +++.++|++|+++++++.|+++|+||..+.+..
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT   33 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence            468899999999999999999999999998854

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.10  E-value=0.0027  Score=44.55  Aligned_cols=58  Identities=21%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      +++.=+|+||.++++++.|+++|+||..+.+......+.-  ++.+.+..    .+.+.+.|++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~--~v~~~ve~----~~~~~~~L~~   59 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKA--LLIFRTED----IEKAIEVLQE   59 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeE--EEEEEeCC----HHHHHHHHHH
Confidence            6778899999999999999999999999877433212332  23444431    4555555554

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.83  E-value=0.023  Score=49.41  Aligned_cols=87  Identities=17%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeee
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV  122 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~  122 (269)
                      .-+++....+||...++|..++++|+||.-.+|+....+..-.+-|+++  + ..+++.|.+.+....--.     ..+.
T Consensus         3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE--g-i~d~e~l~~~lks~d~v~-----ev~i   74 (218)
T COG1707           3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE--G-IDDFEKLLERLKSFDYVI-----EVEI   74 (218)
T ss_pred             ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee--C-CCCHHHHHHHhhccceEE-----Eeee
Confidence            3578889999999999999999999999999998643222333445554  2 336788877776642111     1122


Q ss_pred             cC---CCCCeeEEEEEeC
Q 024345          123 PD---IDPKYKVAVLASK  137 (269)
Q Consensus       123 ~~---~~~~~riav~~Sg  137 (269)
                      +.   .-.-+||.+++.|
T Consensus        75 ~~sle~iyGKRvIiiGGG   92 (218)
T COG1707          75 HRSLEEIYGKRVIIIGGG   92 (218)
T ss_pred             cchHHHHhCcEEEEECCc
Confidence            22   2233677777655

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.81  E-value=0.014  Score=44.04  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ++.|.+.||||+.++|++.|+++|++|....-.
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~   34 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS   34 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence            688999999999999999999999999986654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.72  E-value=0.007  Score=53.75  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p   93 (269)
                      ....+-+.-.||||+|..|++.|.++||||..|+..-...+|.=.|.++++-|
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~  199 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN  199 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence            34566677799999999999999999999999988533335665667777643

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK07334 threonine dehydratase; Provisional

Probab=96.63  E-value=0.013  Score=56.81  Aligned_cols=69  Identities=13%  Similarity=0.010  Sum_probs=53.0

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~---~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      .....+..|.|.+.||||++++|++.|++.++||.+++....   ...+...+.+.+.+.+    .++|.+-+.+|
T Consensus       321 ~~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~L  392 (403)
T PRK07334        321 VRAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAAL  392 (403)
T ss_pred             HhCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHH
Confidence            445567899999999999999999999999999999987532   1356777888888774    45555544444

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=96.54  E-value=0.013  Score=61.30  Aligned_cols=71  Identities=11%  Similarity=0.063  Sum_probs=56.5

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      ..++.|.|.+.||+|++++|++++++.++||.++++......+.+.+.+.+.+++    .++|..-+..+-.--+
T Consensus       664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~  734 (743)
T PRK10872        664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPD  734 (743)
T ss_pred             eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCC
Confidence            5678999999999999999999999999999999885332257788899999884    6666666666554444

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=96.49  E-value=0.0074  Score=43.77  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             eEEEEEEcC----CCcChHHHHHHHHHhCCCeEeEeee
Q 024345           42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        42 ~~iItV~G~----DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      -..|+|.|+    |.||+++++++.|++.|+||..+++
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS   43 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISS   43 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEE
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEE
Confidence            356788888    8999999999999999999999985

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=96.47  E-value=0.0049  Score=56.52  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ...++-+|.+.-.|.||++.+|+++|+.+|.||+.+-.-.......|.|.+.+.-.+ . -.++.++.+++|-.-+
T Consensus        73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-~-VveQa~rQiedlVnV~  146 (309)
T KOG2663|consen   73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-G-VVEQARRQIEDLVNVY  146 (309)
T ss_pred             ccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-H-HHHHHHHHHHHhhhhh
Confidence            455778999999999999999999999999999998775444567898888887543 2 3677777777765443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.42  E-value=0.0079  Score=58.64  Aligned_cols=66  Identities=15%  Similarity=0.104  Sum_probs=48.6

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      ...++.|.+.-+|+||+|++||+.|+++|+||.+++..-.  ++.=.|.++++-+    -.+++.+.++++.
T Consensus       335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~----~~~~~~~~i~~i~  400 (409)
T PRK11790        335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDAD----YAEEALDALKAIP  400 (409)
T ss_pred             CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCC----CcHHHHHHHHcCC
Confidence            4477889999999999999999999999999999977432  3443455555532    2456666666643

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=96.35  E-value=0.017  Score=41.90  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=39.6

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      ++|.=+||||-..++.+.+++ |.||.+++..-.. .+.=...+.++.++ ....+++.++|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~-~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPD-REDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            357789999999999999999 9999999775321 22112233444443 2244555555544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=96.27  E-value=0.008  Score=64.25  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=34.7

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~   78 (269)
                      ...+|.|.++||||++++|+++|+++|+||.+......
T Consensus       842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~  879 (931)
T PRK05092        842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY  879 (931)
T ss_pred             CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc
Confidence            45899999999999999999999999999999888643

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=96.22  E-value=0.029  Score=58.43  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      ..++.|.|.+.||+|++++|++++++.++||.++++... ..+.+.+.+.+.+.+    .++|..-+..|-.--|
T Consensus       624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~i~~  693 (702)
T PRK11092        624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRVMPD  693 (702)
T ss_pred             eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCC
Confidence            567799999999999999999999999999999997532 246778888888874    5667666666654443

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=96.11  E-value=0.036  Score=57.59  Aligned_cols=70  Identities=11%  Similarity=0.053  Sum_probs=56.1

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      ..++.|.|.+.||+|++++|++++++.++||.++++... ..+.+.+.+.+.+.+    .++|..-+..+-.--+
T Consensus       608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~ii~~L~~i~~  677 (683)
T TIGR00691       608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKN----YKHLLKIMLKIKTKND  677 (683)
T ss_pred             eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCC
Confidence            578899999999999999999999999999999998533 246778888888874    6777776666654333

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.10  E-value=0.074  Score=41.34  Aligned_cols=69  Identities=16%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      ..+.+.-+|+||-.+++=+.|+++|+|+..+.+.... ..+.|..-++++..    +.+.++++|+++.+.++.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~----~~~~~~~~l~~L~~~~~~   84 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK----SAPALDPIIKSLRNDIGA   84 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----CCHHHHHHHHHHHHHhCC
Confidence            4444445999999999999999999999999996432 22334433444422    237788888888887764

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=96.05  E-value=0.061  Score=46.36  Aligned_cols=98  Identities=14%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      +++-++++.-.|.||.++.+++.++.+|.||+.+..-.....+.=.|.+.+..  +....+++.+.|.++-+-++..+.+
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g--~~~~~EQi~kQL~kLidV~kV~d~~   79 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG--DEQVLEQIIKQLNKLIDVLKVLDLT   79 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC--CcchHHHHHHHHHhhccceeEEEcC
Confidence            46778999999999999999999999999999998854333443334444443  2355899999999988877754321


Q ss_pred             eeecCCCCCeeEEEEEeCCchH
Q 024345          120 VRVPDIDPKYKVAVLASKQEHC  141 (269)
Q Consensus       120 ~~~~~~~~~~riav~~Sg~g~~  141 (269)
                      -  ...-.+--..+.++..+..
T Consensus        80 ~--~~~veRel~LiKv~~~~~~   99 (163)
T COG0440          80 S--EPHVERELALIKVSAEGSE   99 (163)
T ss_pred             C--cchhheeeEEEEEecCccc
Confidence            0  1122333455566666544

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=95.88  E-value=0.048  Score=38.66  Aligned_cols=66  Identities=18%  Similarity=0.121  Sum_probs=44.1

Q ss_pred             EEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        44 iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      .++++| +|+||+.+++.+.|++.|+||.-+.+.... .+  .+.+.+.++.  .+.+...+.+.++.++++
T Consensus         3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~--~d~~~~~~~l~~~~~~~~   69 (75)
T cd04913           3 KITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPK--SDLKKALAVLEKLKKELG   69 (75)
T ss_pred             EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecH--HHHHHHHHHHHHHHHHcC
Confidence            345554 489999999999999999999988774321 22  2344455553  245556666777665665

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.87  E-value=0.059  Score=39.85  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=42.1

Q ss_pred             EEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        46 tV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      .+.-+|+||-.+++=+.++++|+|+..+.+..... .+.|..-++++..     .+.++++++++.+
T Consensus         4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-----~~~~~~~l~~L~~   65 (74)
T cd04904           4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-----RGDLDQLISSLRR   65 (74)
T ss_pred             EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-----hHHHHHHHHHHHH
Confidence            34448999999999999999999999999964322 2444444555532     2446666666544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK03381 PII uridylyl-transferase; Provisional

Probab=95.74  E-value=0.051  Score=57.18  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~   78 (269)
                      ...+|+|.|+||||++++||++|+++|+||.+......
T Consensus       706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~  743 (774)
T PRK03381        706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATL  743 (774)
T ss_pred             CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence            56799999999999999999999999999999988644

>PRK05092 PII uridylyl-transferase; Provisional

Probab=95.67  E-value=0.3  Score=52.47  Aligned_cols=67  Identities=12%  Similarity=0.029  Sum_probs=48.1

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEE-EEEEEeCCCC---C---CHHHHHHHHHhhh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYS-RSEFIFDPIK---W---PREQMDEDFFKLS  110 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m-~~~v~~p~~~---~---~~~~L~e~L~~la  110 (269)
                      ....|+|+|+||||+++.|+++|+.+|+||.+.+.+..  .+.|.+ .+.|.-+. +   .   ..+.|+++|....
T Consensus       731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~--~dg~alD~F~V~~~~-g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT--TDGRALDTFWIQDAF-GRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe--cCCeEEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999987543  233443 35553332 2   1   2456777776654

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=95.60  E-value=0.086  Score=54.77  Aligned_cols=73  Identities=11%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      +....+.|.|.+.||+|+.++|+++|++.++||..+++... .++.+.|.+.+.+.+    ..+|..-+.++-+--+.
T Consensus       623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~~~~~V  695 (701)
T COG0317         623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLKQLPDV  695 (701)
T ss_pred             CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHhcCCCe
Confidence            56688899999999999999999999999999999999654 456777888888874    66677766666544443

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=95.59  E-value=0.064  Score=44.90  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             ccccccceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHH
Q 024345           23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQM  102 (269)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L  102 (269)
                      |..-+|+-.+     -..+.+.+++.-.||.|+.+++=..+++.++||+-++|.+ |.+|.-...+.++......+.+.+
T Consensus        58 kD~vfpf~~m-----~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~i  131 (150)
T COG4492          58 KDFVFPFYDM-----LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKI  131 (150)
T ss_pred             ccceeehhhc-----ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHHH
Confidence            3334555544     2236788889999999999999999999999999999974 567877777777654333344444


Q ss_pred             HHHHH
Q 024345          103 DEDFF  107 (269)
Q Consensus       103 ~e~L~  107 (269)
                      -+.|.
T Consensus       132 i~kl~  136 (150)
T COG4492         132 IEKLR  136 (150)
T ss_pred             HHHHh
Confidence            44443

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.51  E-value=0.064  Score=51.32  Aligned_cols=70  Identities=16%  Similarity=-0.017  Sum_probs=47.5

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee---ccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF---VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~---~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      .....+.++|.=+||||..+++++.++++|+||.++...   .....+.-...+.++..+ ..+.+++.+.|++
T Consensus       301 ~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~  373 (380)
T TIGR01127       301 KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD  373 (380)
T ss_pred             hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            345677999999999999999999999999999999653   111123333445555442 2234456666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.12  E-value=0.047  Score=54.90  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      ....+-+.-.|+||+|+.|++.|+++++||..++..-...++.-.|.++++-+   .+ +++-+.+.++
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~---v~-~~~l~~i~~~  515 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP---VP-EEVLEELRAL  515 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC---CC-HHHHHHHhcC
Confidence            44455566799999999999999999999999987532234565666766633   22 4455555543

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.04  E-value=0.17  Score=37.21  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=46.6

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFKLS  110 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~---~~~~~~L~e~L~~la  110 (269)
                      +|||-|||+.|+=.++++.+.+.|.+|..-+...   +|..-..+-.-+|..   .+.-+.|+..|.+.|
T Consensus         2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT---DGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~C   68 (69)
T cd04894           2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDST---DGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSAC   68 (69)
T ss_pred             EEEEeCCCccCcccHHHHHHHHhceEEEeccccc---CCcEEEEEEEEecCCCCCcccHHHHHHHHHhcC
Confidence            6899999999999999999999999998765532   454433333333432   466788888887654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=94.99  E-value=0.12  Score=49.91  Aligned_cols=51  Identities=16%  Similarity=0.062  Sum_probs=37.1

Q ss_pred             ceEEEEEEcC-CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe
Q 024345           41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF   92 (269)
Q Consensus        41 ~~~iItV~G~-DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~   92 (269)
                      ..+.+.+.=+ |+||.+++|++.|+++|+||.++.+. ....+.|.+.+++.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~-~~r~~~y~f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS-RTPAGELHFRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe-cccCceEEEEEEEec
Confidence            4555666666 99999999999999999999999983 222344444455553

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=94.98  E-value=0.18  Score=38.66  Aligned_cols=69  Identities=9%  Similarity=-0.021  Sum_probs=58.4

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      |+.|-+++...++||.+.+|=++...+|.-+..++++....+|.-.+.+.|+.+   -.++-|...|+++-+
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~D   69 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLYD   69 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHcc
Confidence            678999999999999999999999999999999998754456777777777755   368889999988644

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.74  E-value=0.056  Score=54.36  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      ...+-+.-.|+||+|..|++.|.++++||..++..-...+|.-.|.++++-+   .+ +++.+.+.++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~---v~-~~~l~~i~~~  514 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP---VP-DEVLEEIKAI  514 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC---CC-HHHHHHHhcC
Confidence            3455556699999999999999999999999887533334566666777643   22 4444445443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08198 threonine dehydratase; Provisional

Probab=94.53  E-value=0.092  Score=50.71  Aligned_cols=42  Identities=26%  Similarity=0.218  Sum_probs=37.3

Q ss_pred             CCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        35 ~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ........+.+.|.=+|+||..+++.+.+++.|+||.++++.
T Consensus       320 gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        320 GLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             hhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            344566778999999999999999999999999999999885

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=94.33  E-value=0.52  Score=50.03  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (269)
Q Consensus        41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~  117 (269)
                      .-..|+++|.   ++||+.+++.+.|++.|+||.-++|...    .-.  +.+-++     .++...++..+-++|-.  
T Consensus       395 ~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS----e~~--Is~vV~-----~~d~~~al~~LH~~f~~--  461 (819)
T PRK09436        395 NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS----ERS--ISVVID-----NDDATKALRACHQSFFL--  461 (819)
T ss_pred             CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc----cce--EEEEEc-----HHHHHHHHHHHHHHHhc--
Confidence            4567999997   7899999999999999999999987321    112  333333     35577888888888853  


Q ss_pred             eeeeecCCCCCeeEEEEEeCC-chHHHHHHHhhh----cCCCCceEEEEe
Q 024345          118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI  162 (269)
Q Consensus       118 ~~~~~~~~~~~~riav~~Sg~-g~~l~~ll~~~~----~g~l~~~i~~Vi  162 (269)
                             ..++++|+++|-|. |..+.++|...+    +..+..+|++|.
T Consensus       462 -------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~  504 (819)
T PRK09436        462 -------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA  504 (819)
T ss_pred             -------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence                   23678999999998 777777765322    113456677653

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.21  E-value=0.17  Score=48.33  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=35.5

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ......+.+.|.-+||||.++++++.|++.|+||.|+.-.
T Consensus       285 ~~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~  324 (359)
T PRK06545        285 GAIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL  324 (359)
T ss_pred             CCCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence            3445778899999999999999999999999999999874

>PRK06382 threonine dehydratase; Provisional

Probab=94.19  E-value=0.21  Score=48.46  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=47.8

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee-c--cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-V--PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~-~--~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      ......++|.=+|+||.++++++.|+++|+||.++... .  ....+.-.+.+.++..+ ..+.+++.+.|++.
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~~  399 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALREM  399 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence            45677899999999999999999999999999988763 1  11223333455555442 12334666666653

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=94.17  E-value=0.11  Score=42.90  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeee
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR  121 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~  121 (269)
                      --|+|.-..+||-.+.++..|.++|+||..++-   ..+|.|- +||.|+-|      ++-...|++.+    .   +.+
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~ti---Adt~dFGIiRmvV~~~------d~A~~~Lee~g----F---~Vr   67 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTI---ADTGDFGIIRMVVDRP------DEAHSVLEEAG----F---TVR   67 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEe---ccccCcceEEEEcCCh------HHHHHHHHHCC----c---EEE
Confidence            357889999999999999999999999999977   4468885 57777654      33345555432    1   122


Q ss_pred             ecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCce-EEEEeeCCCCC-------CChhHHHHHHhCCCCeE
Q 024345          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE-ITCVISNHDRG-------PNSHVIRFLERHGIPYH  185 (269)
Q Consensus       122 ~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~-i~~Visn~~~~-------~~~~v~~~a~~~gIP~~  185 (269)
                      .++     =+||=.-.....|..+++....-.++.+ +.+.++.+++.       .--.+++..+.+|||+.
T Consensus        68 ~~d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~  134 (142)
T COG4747          68 ETD-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI  134 (142)
T ss_pred             eee-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence            221     2333333333344444444334444433 23333332210       01235666778888876

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.14  E-value=0.67  Score=34.57  Aligned_cols=61  Identities=20%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             EcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        48 ~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      .-+|+||-.+++=+.++.+|+|+..+.+..... .+.|..-++++..     .+.++++++++.+..
T Consensus         6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~~l~~~~   67 (74)
T cd04929           6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQLLKREV   67 (74)
T ss_pred             EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHHHHHHhc
Confidence            348999999999999999999999999964322 2334433444422     246777777775543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=93.95  E-value=0.47  Score=32.18  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .|+++|.   +++|+++++.+.|+++++++.-+.+.
T Consensus         2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~   37 (65)
T cd04892           2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG   37 (65)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence            5788887   88999999999999999999999874

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK05007 PII uridylyl-transferase; Provisional

Probab=93.89  E-value=0.09  Score=56.14  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=38.2

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc--CCCCeEEE
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYS   86 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~--~~~g~F~m   86 (269)
                      ......+|.|.++||||+.++|+++|+++|+||....-...  .-.+.|.+
T Consensus       804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV  854 (884)
T PRK05007        804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL  854 (884)
T ss_pred             CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence            33567799999999999999999999999999998655432  12246664

>PRK11899 prephenate dehydratase; Provisional

Probab=93.88  E-value=0.53  Score=43.85  Aligned_cols=69  Identities=10%  Similarity=-0.014  Sum_probs=47.4

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      +..+-+.-+|+||-.+++=+.|+++|+|+..+.+.... ..+.|..-++++.   ..+-..++++|+++.+..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg---~~~d~~v~~aL~~l~~~~  263 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG---HPEDRNVALALEELRFFS  263 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC---CCCCHHHHHHHHHHHHhc
Confidence            34444444899999999999999999999999997432 2244443444443   223456788888876543

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.86  E-value=0.47  Score=38.48  Aligned_cols=64  Identities=6%  Similarity=0.034  Sum_probs=43.3

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      ..+.+.-+|+||-.+++=+.++.+|+|+..+.+.... ..+.|..-++++..     .+.+..+++.+..
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L~~  106 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSLRQ  106 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHHHH
Confidence            4444445999999999999999999999999996432 23444434555432     2346666666644

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=93.83  E-value=0.5  Score=33.54  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=40.4

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      ..|+++|.   ++||+.+++.++|++.|+|+...++      ..-  .+.+-++     .++..+++..+-++|.
T Consensus         2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~------Se~--~is~~v~-----~~~~~~av~~Lh~~f~   63 (64)
T cd04937           2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD------SHT--TISCLVS-----EDDVKEAVNALHEAFE   63 (64)
T ss_pred             eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc------Ccc--EEEEEEc-----HHHHHHHHHHHHHHhc
Confidence            36889997   8999999999999999999975543      111  2223333     2455666666666653

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.72  E-value=0.34  Score=47.48  Aligned_cols=69  Identities=10%  Similarity=-0.059  Sum_probs=48.1

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      .....+|.|.+...|+||..++|++.|+++|+||..+.|.... .+.-.+.+..+.    .+..++++.++++.
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~~----~~e~~l~~~i~~L~  411 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTHE----TSEAALRAALAAIE  411 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEEe----CCHHHHHHHHHHHh
Confidence            3456679999999999999999999999999999999886321 122222233332    23456666665554

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=93.59  E-value=0.55  Score=42.44  Aligned_cols=80  Identities=26%  Similarity=0.294  Sum_probs=53.5

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCC--------Ch-hHHHHHHhCCCCeEEeCCCC-CchH-HH
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NERE-EE  197 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~--------~~-~v~~~a~~~gIP~~~~~~~~-~~~e-~~  197 (269)
                      ||++.|.||.--...++..+++.|   ++|.++++-+|..+        |. .+.-.|+..|||+....... .++| ++
T Consensus         1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~   77 (223)
T COG2102           1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE   77 (223)
T ss_pred             CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence            578888888753344777788787   67877776665433        22 25666999999999877432 1222 56


Q ss_pred             HHHHhc--cCCEEEEE
Q 024345          198 LLELVQ--NTDFLVLA  211 (269)
Q Consensus       198 l~~~l~--~~Dlivla  211 (269)
                      +.++++  ++|.||.-
T Consensus        78 L~~~l~~l~~d~iv~G   93 (223)
T COG2102          78 LKEALRRLKVDGIVAG   93 (223)
T ss_pred             HHHHHHhCcccEEEEc
Confidence            667777  78888763

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.55  E-value=0.46  Score=35.41  Aligned_cols=32  Identities=13%  Similarity=0.099  Sum_probs=27.6

Q ss_pred             EEEE--E-cCCCcChHHHHHHHHHhCCCeEeEeee
Q 024345           44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        44 iItV--~-G~DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      .|++  . .+++||..++|-+.|+++|+||.-+.|
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~   37 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT   37 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence            4555  2 368899999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=93.51  E-value=0.37  Score=41.56  Aligned_cols=47  Identities=21%  Similarity=-0.018  Sum_probs=33.2

Q ss_pred             EEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (269)
Q Consensus        45 ItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~   91 (269)
                      ++..-.+.|||+|+|++.++++||+|.+.-.......+.=.+++..+
T Consensus        98 i~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte  144 (167)
T COG2150          98 IYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTE  144 (167)
T ss_pred             EEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEe
Confidence            34445678999999999999999999998775432334333344444

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=93.49  E-value=0.64  Score=32.36  Aligned_cols=33  Identities=21%  Similarity=0.122  Sum_probs=29.6

Q ss_pred             EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .|+++|.   |.||+.+++.+.|++.|+|+.-+++.
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~   38 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG   38 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            5788885   88999999999999999999988773

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK03059 PII uridylyl-transferase; Provisional

Probab=93.40  E-value=0.49  Score=50.49  Aligned_cols=37  Identities=14%  Similarity=0.163  Sum_probs=33.5

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      ....|.|.++||||+.++|+++|+.+|+||.+..-..
T Consensus       785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence            5678999999999999999999999999999976653

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=93.34  E-value=0.75  Score=32.22  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=30.1

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ..|+++|.   ++||+.+++.+.|+++|+|+.-++|.
T Consensus         2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~   38 (66)
T cd04919           2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQG   38 (66)
T ss_pred             eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEec
Confidence            36788887   78999999999999999999988873

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=93.27  E-value=0.13  Score=54.81  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .....+|.|.++||||+.+.|+++|+++|++|....-.
T Consensus       780 s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~  817 (854)
T PRK01759        780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT  817 (854)
T ss_pred             CCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc
Confidence            34678999999999999999999999999999986554

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=93.26  E-value=0.45  Score=50.72  Aligned_cols=50  Identities=12%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~   91 (269)
                      ....|+|+++||||+.++|+++|+.+|+||.+..-... .+|...=.+.|.
T Consensus       676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~  725 (854)
T PRK01759        676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVT  725 (854)
T ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEe
Confidence            45588999999999999999999999999999875422 245443345554

>PRK05007 PII uridylyl-transferase; Provisional

Probab=93.03  E-value=0.51  Score=50.51  Aligned_cols=50  Identities=12%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~   91 (269)
                      ....|+|+++||||+.+.|+++|+.+|+||.+..-+.. ..|...=.+.|.
T Consensus       700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~  749 (884)
T PRK05007        700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVL  749 (884)
T ss_pred             CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEE
Confidence            46689999999999999999999999999999875432 235443344443

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.87  E-value=0.49  Score=35.79  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=27.3

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .++.|.=+||||-.+++++.|+  +.||.+....
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~   33 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR   33 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence            4678889999999999999999  7788877664

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=92.62  E-value=1.1  Score=31.17  Aligned_cols=60  Identities=8%  Similarity=0.111  Sum_probs=41.2

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..++++|.   +++|+.+++.+.|+++|+|+.-+++...   +   ..+.+.+|.     ++..++.+.+-++|
T Consensus         2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s---~---~~isf~i~~-----~~~~~~~~~Lh~~~   64 (66)
T cd04924           2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS---E---YNISFVVAE-----DDGWAAVKAVHDEF   64 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc---c---ceEEEEEeH-----HHHHHHHHHHHHHh
Confidence            46788886   7899999999999999999999887421   1   344455553     33444444444444

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=92.52  E-value=0.48  Score=50.76  Aligned_cols=50  Identities=12%  Similarity=0.075  Sum_probs=38.7

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~   91 (269)
                      ....|+|+++||||+.+.++++|+.+|+||.+.+-+.. ..|...=.+.|.
T Consensus       703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~  752 (895)
T PRK00275        703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVL  752 (895)
T ss_pred             CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEe
Confidence            45588999999999999999999999999999876432 245433355554

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=92.17  E-value=0.85  Score=48.92  Aligned_cols=38  Identities=13%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~   78 (269)
                      ....|.|.+.||||+.++|+++|+++|+||.+..-...
T Consensus       813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~  850 (895)
T PRK00275        813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL  850 (895)
T ss_pred             CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence            45689999999999999999999999999999876543

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=91.95  E-value=0.51  Score=44.53  Aligned_cols=72  Identities=21%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             CCeeEEEEEeCC-chH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH--h
Q 024345          127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V  202 (269)
Q Consensus       127 ~~~riav~~Sg~-g~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~--l  202 (269)
                      +++||||+|+|. |+. +..+++   .+  ..++++|+...   +++..+++|+++|+|+.+-+     . +++++.  +
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~~-----i-e~LL~~~~~   68 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSAEG-----I-DGLLAMPEF   68 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccCC-----H-HHHHhCcCC
Confidence            468999999998 554 334333   22  37888887754   45567788999999986521     1 234432  1


Q ss_pred             ccCCEEEEEe
Q 024345          203 QNTDFLVLAR  212 (269)
Q Consensus       203 ~~~Dlivla~  212 (269)
                      .++|+++.+.
T Consensus        69 ~dIDiVf~AT   78 (302)
T PRK08300         69 DDIDIVFDAT   78 (302)
T ss_pred             CCCCEEEECC
Confidence            2567766643

>PRK04374 PII uridylyl-transferase; Provisional

Probab=91.86  E-value=1  Score=48.16  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=34.6

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~   78 (269)
                      ....+|+|.+.||||+.++|+++|+++|+||.+..-...
T Consensus       794 ~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~  832 (869)
T PRK04374        794 GRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF  832 (869)
T ss_pred             CCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence            366799999999999999999999999999999776543

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=91.80  E-value=0.89  Score=33.41  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=28.0

Q ss_pred             EEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345           43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        43 ~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      ..++++|   .+.+|+++++.+.|+++|+|+.-+.+
T Consensus         2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~   37 (75)
T cd04912           2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST   37 (75)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence            3567765   47899999999999999999988865

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]

Probab=91.73  E-value=1.1  Score=44.35  Aligned_cols=68  Identities=15%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh---ccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhh
Q 024345           80 KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQ  150 (269)
Q Consensus        80 ~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el---~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~  150 (269)
                      ..|.|-+.++---|+   ....|...|+++-+.|   |+.+-....+-...|.+|+|..|.+|.-+++++.-++
T Consensus        87 ~rG~YQi~~~~~~p~---G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~  157 (440)
T COG1570          87 PRGDYQIVAESMEPA---GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLS  157 (440)
T ss_pred             CCCceEEEEecCCcC---ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHH
Confidence            467776555544454   5677888888876554   3444344455566778999999999999999987543

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.69  E-value=0.28  Score=51.76  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=34.6

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ......+++|.|.||||+.++|+++|++++.+|....-+
T Consensus       787 ~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt  825 (867)
T COG2844         787 ASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT  825 (867)
T ss_pred             cCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec
Confidence            334688999999999999999999999999999987664

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=91.59  E-value=3  Score=44.39  Aligned_cols=101  Identities=3%  Similarity=-0.008  Sum_probs=70.7

Q ss_pred             ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (269)
Q Consensus        41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~  117 (269)
                      .-.+|+++|.   .++|+.+++.+.|++.++|+....+      +...+.+.|  +     .++..+++..+-++|-.  
T Consensus       390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~------s~~sis~vV--~-----~~d~~~av~~LH~~f~~--  454 (810)
T PRK09466        390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSE------DGLSLVAVL--R-----QGPTESLIQGLHQSLFR--  454 (810)
T ss_pred             CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeC------CCcEEEEEE--e-----hHHHHHHHHHHHHHHhC--
Confidence            4457999996   6899999999999999999977654      222333333  3     35677888888888842  


Q ss_pred             eeeeecCCCCCeeEEEEEeCC-chHHHHHHHhhhc-----CCCCceEEEEee
Q 024345          118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-----GKLPVEITCVIS  163 (269)
Q Consensus       118 ~~~~~~~~~~~~riav~~Sg~-g~~l~~ll~~~~~-----g~l~~~i~~Vis  163 (269)
                             ..+..+|+++|-|+ |..+.++|...++     -.+..+|++|..
T Consensus       455 -------~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~  499 (810)
T PRK09466        455 -------AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD  499 (810)
T ss_pred             -------cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence                   23568999999999 6777777654321     124566777753

>PRK08526 threonine dehydratase; Provisional

Probab=91.56  E-value=0.77  Score=44.76  Aligned_cols=39  Identities=15%  Similarity=0.136  Sum_probs=35.3

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .....+.+.|.=+||||-.+++++.+++.+.||.+++..
T Consensus       322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~  360 (403)
T PRK08526        322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD  360 (403)
T ss_pred             hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence            356778899999999999999999999999999999774

>PRK04374 PII uridylyl-transferase; Provisional

Probab=91.55  E-value=6  Score=42.48  Aligned_cols=66  Identities=14%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCC---CHHHHHHHHHh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW---PREQMDEDFFK  108 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~---~~~~L~e~L~~  108 (269)
                      ....|+|+++||||+.+.++++|+.+|+||.+..-+.. ..|.-.=.+.|.-|. +.   ....++++|.+
T Consensus       689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~-~~~~~~~~~i~~~l~~  757 (869)
T PRK04374        689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQD-TYADGDPQRLAAALRQ  757 (869)
T ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCC-CCChHHHHHHHHHHHH
Confidence            45578999999999999999999999999999877643 245433355555443 22   13335555554

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=91.37  E-value=1.4  Score=31.41  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=40.9

Q ss_pred             EEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..++++|.  ..+|+.+++-+.|++.|+|+.-+++...    .-.  +.+-++     .++..+++..+-++|
T Consensus         2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s----~~s--is~~v~-----~~~~~~av~~Lh~~f   63 (65)
T cd04918           2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS----KVN--ISLIVN-----DSEAEGCVQALHKSF   63 (65)
T ss_pred             cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc----cce--EEEEEe-----HHHHHHHHHHHHHHH
Confidence            47889997  4689999999999999999998887321    112  222233     244556666665554

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=91.30  E-value=1.3  Score=47.32  Aligned_cols=52  Identities=15%  Similarity=0.154  Sum_probs=39.5

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p   93 (269)
                      ....|+|+++||||+.+.++++|+.+|+||.+..-+.. ..|.-.=.+.|.-|
T Consensus       677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~  728 (856)
T PRK03059        677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDP  728 (856)
T ss_pred             CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCC
Confidence            45588999999999999999999999999999877533 24543334555434

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=91.19  E-value=0.71  Score=46.37  Aligned_cols=90  Identities=16%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeeeeec
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP  123 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~~~~  123 (269)
                      .+.|+|.||.||+.+|...|+.+++|+..+...  + .|..+    +..|  ..+++.+++-+.++..--|         
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~--~-~~~~~----~~~~--~~~~~~~~~~~~~~~~~~g---------   63 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--P-IGRIY----LNFA--ELEFESFSSLMAEIRRIAG---------   63 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc--C-CCeEE----EeCC--CcChhhHHHHHHHHhcCCC---------
Confidence            478999999999999999999999999999873  2 24322    2333  3455555444444321111         


Q ss_pred             CCCCCeeEEEEEeCCc-hHHHHHHHhhhcC
Q 024345          124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEG  152 (269)
Q Consensus       124 ~~~~~~riav~~Sg~g-~~l~~ll~~~~~g  152 (269)
                       -..-..|.++-+-+- .-|+++++.+.+|
T Consensus        64 -v~~~~~~~~~~~e~e~~~L~aIL~sm~eG   92 (520)
T PRK10820         64 -VTDVRTVPFMPSEREHRALSALLEALPEP   92 (520)
T ss_pred             -ccchhhhccChHHHHHHHHHHHHHhCCCc
Confidence             112234556655444 5678888877666

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=91.15  E-value=1.2  Score=47.28  Aligned_cols=37  Identities=22%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .....|+|+++||||+.+.|+++|+.+|+||.+..-+
T Consensus       666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~  702 (850)
T TIGR01693       666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVN  702 (850)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEE
Confidence            4566899999999999999999999999999998775

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=91.14  E-value=2  Score=29.78  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ..++++|.   ++||+.+++.+.|++.|+|+.-+++.
T Consensus         2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~   38 (66)
T cd04916           2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG   38 (66)
T ss_pred             eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            35788886   78999999999999999999998874

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=90.96  E-value=0.53  Score=45.08  Aligned_cols=52  Identities=12%  Similarity=0.142  Sum_probs=33.8

Q ss_pred             CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE
Q 024345          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH  185 (269)
Q Consensus       127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~  185 (269)
                      ++.||+|+|++-|.....-+...  + -.+++++|+...    ...+.++|+++|||++
T Consensus         2 ~~~rVgViG~~~G~~h~~al~~~--~-~~~eLvaV~d~~----~erA~~~A~~~gi~~y   53 (343)
T TIGR01761         2 DVQSVVVCGTRFGQFYLAAFAAA--P-ERFELAGILAQG----SERSRALAHRLGVPLY   53 (343)
T ss_pred             CCcEEEEEeHHHHHHHHHHHHhC--C-CCcEEEEEEcCC----HHHHHHHHHHhCCCcc
Confidence            56899999995453322222221  2 137888887754    3467899999999943

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=90.78  E-value=8  Score=42.42  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=84.6

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc----
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA----  115 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l----  115 (269)
                      ...-++-.--|. |++.++=..+...|+...=....+... ...=...++|..++ ....+++.+.|..++..-.-    
T Consensus       462 ~~v~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d-~~~L~~i~~~l~~la~~~~~~~~~  539 (1042)
T PLN02819        462 ILVSLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADD-KEVLDQIIDSLTRLANPNEDYISP  539 (1042)
T ss_pred             EEEEeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCc-HHHHHHHHHHHHHhcccccccccc
Confidence            334444444466 899999999988887665555443211 11223456666553 33445555555555531110    


Q ss_pred             --------------ce-e-eeee-cCCCCCeeEEEEEeCC-chHHHHHHHhhhcCCC---------CceEEEEeeCCCCC
Q 024345          116 --------------MR-S-VVRV-PDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKL---------PVEITCVISNHDRG  168 (269)
Q Consensus       116 --------------~~-~-~~~~-~~~~~~~riav~~Sg~-g~~l~~ll~~~~~g~l---------~~~i~~Visn~~~~  168 (269)
                                    .. . .-+. ....+++||+|+|+|. |...-..|..  .+..         +..+..+|+++.  
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~--~~~~~~~~~~~~~~~~~lV~VaD~~--  615 (1042)
T PLN02819        540 AREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLAS--VKTISYYGDDSEEPTDVHVIVASLY--  615 (1042)
T ss_pred             chhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHh--CcCccccccccccccccEEEEECCC--
Confidence                          00 0 0000 1123578999999998 4433333322  1210         111233455542  


Q ss_pred             CChhHHHHHHhC-CCCeEEeCCCCCchHHHHHHHhccCCEEEEEe
Q 024345          169 PNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLAR  212 (269)
Q Consensus       169 ~~~~v~~~a~~~-gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~  212 (269)
                       ...+.++++.+ ++....++..   +.+++.++++++|++|.+-
T Consensus       616 -~~~a~~la~~~~~~~~v~lDv~---D~e~L~~~v~~~DaVIsal  656 (1042)
T PLN02819        616 -LKDAKETVEGIENAEAVQLDVS---DSESLLKYVSQVDVVISLL  656 (1042)
T ss_pred             -HHHHHHHHHhcCCCceEEeecC---CHHHHHHhhcCCCEEEECC
Confidence             23456677766 7666666522   2346777777888877764

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=90.77  E-value=2  Score=40.13  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~e  112 (269)
                      .+-.|-+.-+|+||-.+++=..|+.+|||+..+.+.... .-|.|.+-++++.   ..+-..++++|+++.+.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg---~~~~~~v~~AL~el~~~  262 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEG---HIDDPLVKEALEELKEI  262 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEec---CcCcHhHHHHHHHHHhh
Confidence            344444445599999999999999999999999996321 2234443455542   23346788888887543

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=90.76  E-value=2.3  Score=30.59  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=40.7

Q ss_pred             EEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..++++|.  .+||+.+++.+.|++.|+|+.-+++..    ..-  .+.+-+++     ++..++++.+-+.|
T Consensus         3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~----s~~--~is~~V~~-----~~~~~av~~Lh~~f   64 (66)
T cd04915           3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM----RNV--DVQFVVDR-----DDYDNAIKALHAAL   64 (66)
T ss_pred             EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC----Cee--EEEEEEEH-----HHHHHHHHHHHHHH
Confidence            46888886  368999999999999999999988832    122  23333332     45556666655544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain

Probab=90.58  E-value=2.1  Score=38.72  Aligned_cols=78  Identities=22%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCC--CCchHHH
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE  197 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~e~~  197 (269)
                      ||++++.||.--+..+++.+.++    .+|+++++-.+...+         .-+...|+..|||.+.++..  .....++
T Consensus         1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~   76 (223)
T TIGR00290         1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE   76 (223)
T ss_pred             CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence            57888888876455577776555    367777665543211         23567799999998875422  1223456


Q ss_pred             HHHHhc--cCCEEEE
Q 024345          198 LLELVQ--NTDFLVL  210 (269)
Q Consensus       198 l~~~l~--~~Dlivl  210 (269)
                      +.+.++  ++|.+|.
T Consensus        77 l~~~l~~~gv~~vv~   91 (223)
T TIGR00290        77 LKGILHTLDVEAVVF   91 (223)
T ss_pred             HHHHHHHcCCCEEEE
Confidence            667776  6776664

Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=90.07  E-value=2.6  Score=36.95  Aligned_cols=70  Identities=23%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             eEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCCC-C-chHHH
Q 024345          130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAKE-N-EREEE  197 (269)
Q Consensus       130 riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~~-~-~~e~~  197 (269)
                      |++++.||.- +++ ++....+.|   .++.++++..+..+.         ..+...|+..|||.+.++... + .+.++
T Consensus         1 kv~v~~SGGkDS~~-al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~   76 (194)
T cd01994           1 KVVALISGGKDSCY-ALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVED   76 (194)
T ss_pred             CEEEEecCCHHHHH-HHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHH
Confidence            6788999975 554 444444455   578777766432111         246788999999999886321 1 22345


Q ss_pred             HHHHhc
Q 024345          198 LLELVQ  203 (269)
Q Consensus       198 l~~~l~  203 (269)
                      +.+.++
T Consensus        77 l~~~l~   82 (194)
T cd01994          77 LKELLR   82 (194)
T ss_pred             HHHHHH
Confidence            555554

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=90.00  E-value=1.6  Score=42.47  Aligned_cols=69  Identities=4%  Similarity=-0.050  Sum_probs=46.7

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      +..+-+.-+|+||-.+++=+.|+.+|+|+..+.+.... ..+.|..-++++.   ..+-..++++|+++.+..
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg---~~~d~~~~~aL~~l~~~~  366 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA---NLRSAEMQKALKELGEIT  366 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC---CCCCHHHHHHHHHHHHhc
Confidence            33344444799999999999999999999999997432 2244443344442   223356788888775544

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal

Probab=89.65  E-value=1.2  Score=40.01  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCC--CCchHHH
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE  197 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~e~~  197 (269)
                      ||++++-||.--+..+|..+.++    ++|.+++|-.+...+         .-+..-|+..|||.+....+  ...+.++
T Consensus         1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~   76 (218)
T PF01902_consen    1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED   76 (218)
T ss_dssp             -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence            68999999976333467666554    467776655432122         23677799999999987633  2234467


Q ss_pred             HHHHhc--cCCEEEE
Q 024345          198 LLELVQ--NTDFLVL  210 (269)
Q Consensus       198 l~~~l~--~~Dlivl  210 (269)
                      +.+.++  ++|.+|.
T Consensus        77 l~~~l~~~~v~~vv~   91 (218)
T PF01902_consen   77 LKEALKELKVEAVVF   91 (218)
T ss_dssp             HHHHHCTC--SEEE-
T ss_pred             HHHHHHHcCCCEEEE
Confidence            778887  6776654

The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.

>TIGR00289 conserved hypothetical protein TIGR00289

Probab=89.60  E-value=3.2  Score=37.42  Aligned_cols=77  Identities=23%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             eeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCC--------C-hhHHHHHHhCCCCeEEeCCCC-C-chHH
Q 024345          129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE-N-EREE  196 (269)
Q Consensus       129 ~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~--------~-~~v~~~a~~~gIP~~~~~~~~-~-~~e~  196 (269)
                      ||++++-||.- +++ +++...++    ++|+++++..+...        + .-+...|+..|||++.+.... . ...+
T Consensus         1 Mkv~vl~SGGKDS~l-Al~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~   75 (222)
T TIGR00289         1 MKVAVLYSGGKDSIL-ALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVE   75 (222)
T ss_pred             CeEEEEecCcHHHHH-HHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHH
Confidence            58999999976 554 66655543    36777777654311        1 236678999999987765221 1 1124


Q ss_pred             HHHHHhc--cCCEEEE
Q 024345          197 ELLELVQ--NTDFLVL  210 (269)
Q Consensus       197 ~l~~~l~--~~Dlivl  210 (269)
                      ++.+.++  ++|-+|.
T Consensus        76 ~l~~~l~~~gv~~vv~   91 (222)
T TIGR00289        76 DLAGQLGELDVEALCI   91 (222)
T ss_pred             HHHHHHHHcCCCEEEE
Confidence            5556665  6777664

Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=89.46  E-value=0.9  Score=30.00  Aligned_cols=33  Identities=18%  Similarity=0.092  Sum_probs=29.6

Q ss_pred             EEEEEcCC---CcChHHHHHHHHHhCCCeEeEeeee
Q 024345           44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        44 iItV~G~D---rpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .+++.|.+   .+|..+++.+.|+++++|+.-+.+.
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~   37 (60)
T cd04868           2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS   37 (60)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence            57788887   8999999999999999999998874

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=89.31  E-value=1.4  Score=33.26  Aligned_cols=57  Identities=16%  Similarity=0.212  Sum_probs=37.0

Q ss_pred             CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-HHHHHHHHHhhhhhhc
Q 024345           50 PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFFKLSKMFN  114 (269)
Q Consensus        50 ~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~-~~~L~e~L~~la~el~  114 (269)
                      ++.||..++|-+.|+++|+|+.-+.|.     .   ..+.+.++.++.. .....++|+++..|+.
T Consensus        12 ~~~~g~~a~IF~~La~~~InVDmI~qs-----~---~sISftV~~sd~~~~~~~~~~l~~~~~~~~   69 (78)
T cd04933          12 LGQYGFLAKVFSIFETLGISVDVVATS-----E---VSISLTLDPSKLWSRELIQQELDHVVEELE   69 (78)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEEec-----C---CEEEEEEEhhhhhhhhhHHHHHHHHHHHHH
Confidence            588999999999999999999999771     1   2233444432221 2222346666666665

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=89.02  E-value=2.6  Score=28.14  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             CCCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           50 PDEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        50 ~DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      +|++|+.+++.+.|+++|+||.-+++.
T Consensus         9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~   35 (61)
T cd04891           9 PDKPGVAAKIFSALAEAGINVDMIVQS   35 (61)
T ss_pred             CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence            578999999999999999999998885

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=88.89  E-value=3.5  Score=28.04  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=27.6

Q ss_pred             EEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        44 iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      .++++|   .+.+|+.+++.+.|+++|+|+.-+++
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04936           2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST   36 (63)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence            477877   37799999999999999999988875

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>TIGR02079 THD1 threonine dehydratase

Probab=88.59  E-value=2.1  Score=41.71  Aligned_cols=73  Identities=7%  Similarity=-0.023  Sum_probs=47.8

Q ss_pred             CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      .-.....+.++|.=+||||-..++.+.+.+.+.||.+.+..-....+.=...+.++.++ ..+.+++.++|++.
T Consensus       319 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~~  391 (409)
T TIGR02079       319 LLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND-KEDFAGLLERMAAA  391 (409)
T ss_pred             HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence            34456788999999999999999999777787899998875211112212334455543 22445566666553

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK08639 threonine dehydratase; Validated

Probab=88.57  E-value=2.1  Score=41.82  Aligned_cols=73  Identities=5%  Similarity=0.008  Sum_probs=48.2

Q ss_pred             CCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      .-.....+.+++.=+||||-..++.+.+.+.+.||.+++.......+.=...+.++.++ ..+.+++.++|++.
T Consensus       330 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~~  402 (420)
T PRK08639        330 LIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-AEDYDGLIERMEAF  402 (420)
T ss_pred             HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence            34466788999999999999999999777777799999764211111112345555553 22455666666553

>PRK00907 hypothetical protein; Provisional

Probab=88.37  E-value=3.4  Score=32.35  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      -.+-+.|+|.+++++...|..++..|.-...+-+.... +..|.|. +.+.+.+.    +.++|.+-.++|.+
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~   84 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRD   84 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence            35899999999999999999999999876554443322 4568775 66777655    36667666666544

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=88.32  E-value=1.8  Score=32.19  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=24.4

Q ss_pred             CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345           50 PDEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        50 ~DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      ++.||..+++-+.|+++|+|+.-+.|
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI~~   37 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLVST   37 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            48899999999999999999999977

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=88.17  E-value=4.1  Score=27.67  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=27.9

Q ss_pred             EEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        44 iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      .++++|   .+.+|+.+++.+.|+++|+|+.-+++
T Consensus         2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04923           2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST   36 (63)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence            477877   37799999999999999999988875

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=87.62  E-value=4.2  Score=37.79  Aligned_cols=67  Identities=13%  Similarity=0.024  Sum_probs=43.5

Q ss_pred             eEEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           42 HGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        42 ~~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      +..+-+.- +|+||-.+++=+.|+++|+|+..+.+.... ..+.|..-++++..   .+...++++|+.+.+
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~L~~  264 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKELEA  264 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHHHHH
Confidence            44444444 457999999999999999999999996432 22334434444432   233456777766644

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional

Probab=87.42  E-value=5.1  Score=36.36  Aligned_cols=78  Identities=26%  Similarity=0.388  Sum_probs=48.6

Q ss_pred             HHHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc--hHHHHHHHhhhc-CCCCceEEEEeeCCCC-C-CChhHHHH
Q 024345          102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDR-G-PNSHVIRF  176 (269)
Q Consensus       102 L~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g--~~l~~ll~~~~~-g~l~~~i~~Visn~~~-~-~~~~v~~~  176 (269)
                      +.+.+.+...++++         ..+.-||+|..||..  ..|..++...+. ...+.++.+|-.|+-- . ....+.++
T Consensus        12 ~~~~v~~~i~~~~l---------i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~   82 (258)
T PRK10696         12 LRRQVGQAIADFNM---------IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEY   82 (258)
T ss_pred             HHHHHHHHHHHcCC---------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHH
Confidence            44455555555653         124459999999985  455555544332 3334678877766521 1 12346899


Q ss_pred             HHhCCCCeEEeC
Q 024345          177 LERHGIPYHYLC  188 (269)
Q Consensus       177 a~~~gIP~~~~~  188 (269)
                      |+++|||++.+.
T Consensus        83 ~~~lgI~~~v~~   94 (258)
T PRK10696         83 LESLGVPYHIEE   94 (258)
T ss_pred             HHHhCCCEEEEE
Confidence            999999998764

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=87.36  E-value=1.7  Score=33.78  Aligned_cols=67  Identities=22%  Similarity=0.335  Sum_probs=42.4

Q ss_pred             eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--c
Q 024345          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (269)
Q Consensus       129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~  204 (269)
                      +||++.|.|..  .-+..+...  .+  ..++++|+...    .....++++++|+|++.      +    +.++++  +
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~--~~--~~~v~~v~d~~----~~~~~~~~~~~~~~~~~------~----~~~ll~~~~   62 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRS--SP--DFEVVAVCDPD----PERAEAFAEKYGIPVYT------D----LEELLADED   62 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHT--TT--TEEEEEEECSS----HHHHHHHHHHTTSEEES------S----HHHHHHHTT
T ss_pred             CEEEEECCcHHHHHHHHHHHhc--CC--CcEEEEEEeCC----HHHHHHHHHHhcccchh------H----HHHHHHhhc
Confidence            58999999874  233444442  12  36777766544    34577789999999332      1    224444  7


Q ss_pred             CCEEEEEec
Q 024345          205 TDFLVLARY  213 (269)
Q Consensus       205 ~Dlivla~y  213 (269)
                      +|+++++.-
T Consensus        63 ~D~V~I~tp   71 (120)
T PF01408_consen   63 VDAVIIATP   71 (120)
T ss_dssp             ESEEEEESS
T ss_pred             CCEEEEecC
Confidence            999988754

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK08841 aspartate kinase; Validated

Probab=86.93  E-value=2.3  Score=41.35  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=48.1

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      .-..++++|...||+.+++.+.|++.|+||....+     +. -.  +.+-++     .++..+++..+-++|.+
T Consensus       317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~-----s~-~~--is~vv~-----~~~~~~av~~lH~~f~~  378 (392)
T PRK08841        317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST-----EP-QS--SMLVLD-----PANVDRAANILHKTYVT  378 (392)
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC-----CC-cE--EEEEEe-----HHHHHHHHHHHHHHHcC
Confidence            45579999999999999999999999999977766     12 22  333333     36778888888888876

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=86.54  E-value=4.5  Score=40.42  Aligned_cols=78  Identities=13%  Similarity=-0.039  Sum_probs=50.1

Q ss_pred             cceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCe-EEEEEEEEeCCCCCCHHHHHHH
Q 024345           28 PGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNV-FYSRSEFIFDPIKWPREQMDED  105 (269)
Q Consensus        28 ~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~-F~m~~~v~~p~~~~~~~~L~e~  105 (269)
                      ++-|++.+.......++++  -+|+||-.+++=+.++++|||+..+.+.... ..+. |..-+.++..     ...+.++
T Consensus        19 ~~~~~~~~~~~~ktSLIFs--L~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~-----~~~l~~a   91 (464)
T TIGR01270        19 SIREGDEEEGVQRLSIIFS--LSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF-----HYGLQEA   91 (464)
T ss_pred             ccCccccCCCCceEEEEEE--CCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC-----HHHHHHH
Confidence            3445555555544444444  5899999999999999999999999996432 2233 4333444422     2456666


Q ss_pred             HHhhhhh
Q 024345          106 FFKLSKM  112 (269)
Q Consensus       106 L~~la~e  112 (269)
                      |+.|.+.
T Consensus        92 L~~Lk~~   98 (464)
T TIGR01270        92 MDLLKSG   98 (464)
T ss_pred             HHHHHHh
Confidence            6666543

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=86.34  E-value=1.4  Score=37.35  Aligned_cols=100  Identities=11%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCC--CCC-hhHH----HHHHhCCCCeEEeCCCCCchHHHHHH
Q 024345          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPN-SHVI----RFLERHGIPYHYLCAKENEREEELLE  200 (269)
Q Consensus       128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~--~~~-~~v~----~~a~~~gIP~~~~~~~~~~~e~~l~~  200 (269)
                      .+||++.|-+.+.....++..+..  ++.++  .++.++.  .+. ..+.    +.++++|-.+.+.+        .+.+
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~~--~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e   69 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAK--FGMEV--VLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEE   69 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHH--TTSEE--EEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHHH--cCCEE--EEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHH
Confidence            478999997556555555544322  34553  3333322  111 2344    55666787666643        2345


Q ss_pred             HhccCCEEEEEecc----------------eeee---cccccccccccCCCccccCCCCCCCCCc
Q 024345          201 LVQNTDFLVLARYM----------------QVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGIN  246 (269)
Q Consensus       201 ~l~~~Dlivla~y~----------------~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~  246 (269)
                      .++++|+|..-+|.                ..++   ++..+...+=     .||  ||.+||..
T Consensus        70 ~l~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~-----mH~--LP~~R~~E  127 (158)
T PF00185_consen   70 ALKGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIF-----MHP--LPANRGEE  127 (158)
T ss_dssp             HHTT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EE-----EES--SS--BTTS
T ss_pred             hcCCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEE-----EeC--CCCCCCce
Confidence            66799999999998                4455   5555555666     888  89999954

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK02047 hypothetical protein; Provisional

Probab=86.16  E-value=6.3  Score=30.59  Aligned_cols=72  Identities=8%  Similarity=-0.037  Sum_probs=51.5

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeE--eeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILA--ADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~d--l~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      -..+..+.+.|+|++.++..+.|-.++..+...+.+  +++. .+.+|.|. +.+.+.+.    +.+++.+-+++|.+.-
T Consensus        11 iefPc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k-~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~~   85 (91)
T PRK02047         11 IEYPSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEER-PSSGGNYTGLTITVRAT----SREQLDNIYRALTGHP   85 (91)
T ss_pred             ccCCCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEc-cCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhhCC
Confidence            344556999999999999999999999999766544  3332 24568886 56666655    4677777777765543

>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC)

Probab=85.98  E-value=5.3  Score=28.30  Aligned_cols=32  Identities=3%  Similarity=-0.027  Sum_probs=26.7

Q ss_pred             EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      .++++|.   +.||+.+++.+.|++.++++....+
T Consensus         2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~   36 (63)
T cd04920           2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAA   36 (63)
T ss_pred             EEEEECCCcccCccHHHHHHHHHhcCCceEEEEeC
Confidence            6889997   7899999999999998888755443

This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=85.94  E-value=5.7  Score=28.78  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      ..|+++|.   +++|+.+++.+.|+++++|+.-+++.
T Consensus         2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~   38 (80)
T cd04921           2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA   38 (80)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence            35778765   78999999999999999999999874

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PLN02317 arogenate dehydratase

Probab=85.15  E-value=6.3  Score=38.45  Aligned_cols=36  Identities=19%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      +..|.+.-+|+||-..++=+.|+.+|||+..+.+..
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP  318 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP  318 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence            344444448899999999999999999999999964

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=85.11  E-value=7.2  Score=38.10  Aligned_cols=113  Identities=13%  Similarity=0.098  Sum_probs=63.8

Q ss_pred             CeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345          128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT  205 (269)
Q Consensus       128 ~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~  205 (269)
                      ++||+++||..  |..-.+++.+.  ++ .++|+++..++   .-....+.|++++-.+..+...  +.-.++.+.+.+.
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~--p~-~f~VvaLaa~~---n~~~l~~q~~~f~p~~v~i~~~--~~~~~l~~~l~~~   72 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRN--PD-RFRVVALSAGK---NVELLAEQAREFRPKYVVVADE--EAAKELKEALAAA   72 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhC--cc-ccEEEEEEcCC---CHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHhhccC
Confidence            47999999654  33222334322  22 47899888766   3456889999999777665421  1112233323233


Q ss_pred             CEEEEEecceeee-ccccc-ccccccCCCccccCCCCCCCCCcHHHHHHHcCCC
Q 024345          206 DFLVLARYMQVNR-IRLYV-AQLFSCLVTEQLTVLNSSLGGINISLSSFDATIE  257 (269)
Q Consensus       206 Dlivla~y~~il~-l~~~~-~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~  257 (269)
                      +.-|+.|---+.. ++... .-++|         -.+-+.|..|...|+.+|-+
T Consensus        73 ~~~v~~G~~~~~~l~~~~~vD~Vv~---------Ai~G~aGl~ptl~Ai~aGK~  117 (385)
T PRK05447         73 GIEVLAGEEGLCELAALPEADVVVA---------AIVGAAGLLPTLAAIRAGKR  117 (385)
T ss_pred             CceEEEChhHHHHHhcCCCCCEEEE---------eCcCcccHHHHHHHHHCCCc
Confidence            3335555444433 33221 22455         45667778888888888854

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=85.07  E-value=8.4  Score=37.97  Aligned_cols=69  Identities=12%  Similarity=0.068  Sum_probs=46.3

Q ss_pred             CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh---ccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcC
Q 024345           81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG  152 (269)
Q Consensus        81 ~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el---~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g  152 (269)
                      .|.|-+.++=--|.   ...+|..+|+++-++|   |+.+..-..+...-|.||||..|.+|.-+++++.-++..
T Consensus        82 ~G~~ql~v~~i~~~---G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r  153 (432)
T TIGR00237        82 RGDYQIICFEMQPA---GEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRR  153 (432)
T ss_pred             CCcEEEEEEEeccC---ChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence            45555433322232   4778888888887655   444433445566678999999999999999998765543

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=84.99  E-value=7  Score=36.54  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             CeeEEEEEeCC-chHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEE
Q 024345          128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY  186 (269)
Q Consensus       128 ~~riav~~Sg~-g~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~  186 (269)
                      |+|||++|+|. |..+ ..+++   .+  ..++++|+...   +++...++|+++|+|..+
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~   53 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSA   53 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEE
Confidence            47999999987 4433 45543   22  36888776644   455566799999999875

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=84.90  E-value=6.4  Score=27.21  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=26.4

Q ss_pred             EEEEcC---CCcChHHHHHHHHHhCCCeEeEeee
Q 024345           45 HVFHCP---DEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        45 ItV~G~---DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      |+|.+.   +++|..+++-+.|+++|+|+.-+.+
T Consensus         3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t   36 (62)
T cd04890           3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT   36 (62)
T ss_pred             EEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence            455554   7799999999999999999999976

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK00341 hypothetical protein; Provisional

Probab=84.16  E-value=6.4  Score=30.62  Aligned_cols=66  Identities=8%  Similarity=0.022  Sum_probs=47.7

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM  112 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~-~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~e  112 (269)
                      .+-+.|+|.++++..+.|-+++..+. ...+..... .+.+|.|. +.+.+.+.    +.+++.+-+++|.+.
T Consensus        17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~~   84 (91)
T PRK00341         17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRAT   84 (91)
T ss_pred             CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence            48899999999999999999998776 665443322 24578886 56666665    467777777776543

>PLN02551 aspartokinase

Probab=84.05  E-value=19  Score=36.48  Aligned_cols=86  Identities=10%  Similarity=0.121  Sum_probs=53.1

Q ss_pred             eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345           42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (269)
Q Consensus        42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~  118 (269)
                      -..|++.|.   +++|..++|-+.|+++|+||.-+.+.      ...+.+.++-.+ -...+.+++.|+++..++.... 
T Consensus       366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS------e~sIs~~v~~~~-~~~~~~i~~~l~~l~~el~~~~-  437 (521)
T PLN02551        366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSISLTLDPSK-LWSRELIQQELDHLVEELEKIA-  437 (521)
T ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc------CCEEEEEEehhH-hhhhhhHHHHHHHHHHHhhcCC-
Confidence            457788776   68999999999999999999999762      223334444221 1112335556666666665211 


Q ss_pred             eeeecCCCCCeeEEEEEeC
Q 024345          119 VVRVPDIDPKYKVAVLASK  137 (269)
Q Consensus       119 ~~~~~~~~~~~riav~~Sg  137 (269)
                        +....+..-+|.+.|..
T Consensus       438 --~V~v~~~vAiISvVG~~  454 (521)
T PLN02551        438 --VVNLLQGRSIISLIGNV  454 (521)
T ss_pred             --eEEEeCCEEEEEEEccC
Confidence              11223455678887764

>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61

Probab=83.91  E-value=6  Score=29.33  Aligned_cols=59  Identities=14%  Similarity=0.269  Sum_probs=39.7

Q ss_pred             CeeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCC-CCCChhHHHHHHhCCCCeEEeCC
Q 024345          128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA  189 (269)
Q Consensus       128 ~~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~-~~~~~~v~~~a~~~gIP~~~~~~  189 (269)
                      .+||+|-++-..   .-+.+-|+...+.. + .++ +|+.-. ++.+.-+.++|+++|+|+..+++
T Consensus         3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~-~-~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~a   65 (71)
T PF10686_consen    3 GMRVLITGGRDWTDHELIWAALDKVHARH-P-DMV-LVHGGAPKGADRIAARWARERGVPVIRFPA   65 (71)
T ss_pred             CCEEEEEECCccccHHHHHHHHHHHHHhC-C-CEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence            479999999886   33444455554442 2 344 455443 55566789999999999998874

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.

>PRK06291 aspartate kinase; Provisional

Probab=83.71  E-value=15  Score=36.30  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=30.8

Q ss_pred             eEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        42 ~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      -..|++.|.   +++|+.+++.+.|+++|+|+.-++|.
T Consensus       321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~  358 (465)
T PRK06291        321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG  358 (465)
T ss_pred             EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence            357888886   68999999999999999999999874

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=82.03  E-value=4.7  Score=29.77  Aligned_cols=25  Identities=8%  Similarity=0.022  Sum_probs=23.3

Q ss_pred             CCcChHHHHHHHHHhCCCeEeEeee
Q 024345           51 DEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        51 DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      -+||..++|-+.|+++|+|+.-+.|
T Consensus        13 ~~~g~~~~If~~la~~~I~vd~I~~   37 (73)
T cd04934          13 LSHGFLARIFAILDKYRLSVDLIST   37 (73)
T ss_pred             cccCHHHHHHHHHHHcCCcEEEEEe
Confidence            4599999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>COG3603 Uncharacterized conserved protein [Function unknown]

Probab=81.41  E-value=4.5  Score=33.39  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=43.6

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..+++.|+   |-+||++.|++.|++.|+-|--++++..   + +.   -|.    ..+.+.-.++|++.+.++
T Consensus        64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydt---D-hi---LVr----~~dLekAv~~L~eaGhev  126 (128)
T COG3603          64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDT---D-HI---LVR----EEDLEKAVKALEEAGHEV  126 (128)
T ss_pred             EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEeccC---c-eE---EEe----hhhHHHHHHHHHHcCCcc
Confidence            47788888   9999999999999999999999998732   2 22   121    225666666777665543

>PRK06635 aspartate kinase; Reviewed

Probab=81.36  E-value=7.1  Score=37.58  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             ceEEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeee
Q 024345           41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        41 ~~~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      .-..++++|   +|+||+.+++.+.|+++|+||.-+++
T Consensus       339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s  376 (404)
T PRK06635        339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST  376 (404)
T ss_pred             CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe
Confidence            445688988   59999999999999999999988865

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=81.13  E-value=6.8  Score=36.01  Aligned_cols=69  Identities=22%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             CCeeEEEEEeCCc--h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345          127 PKYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (269)
Q Consensus       127 ~~~riav~~Sg~g--~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~  203 (269)
                      +++||+|+|.|..  . -+..+.+   .+.. +++++++...    ...+.++|+++|+|..+ .        .+.++++
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~---~~~~-~~~vav~d~~----~~~a~~~a~~~~~~~~~-~--------~~~~ll~   64 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAA---LGGG-LELVAVVDRD----PERAEAFAEEFGIAKAY-T--------DLEELLA   64 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHh---CCCc-eEEEEEecCC----HHHHHHHHHHcCCCccc-C--------CHHHHhc
Confidence            5689999999843  2 2222222   1211 4666665543    34688999999999222 1        1334555


Q ss_pred             --cCCEEEEEe
Q 024345          204 --NTDFLVLAR  212 (269)
Q Consensus       204 --~~Dlivla~  212 (269)
                        ++|+++.+.
T Consensus        65 ~~~iD~V~Iat   75 (342)
T COG0673          65 DPDIDAVYIAT   75 (342)
T ss_pred             CCCCCEEEEcC
Confidence              478887763

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=80.79  E-value=8.2  Score=38.31  Aligned_cols=67  Identities=12%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..|.+.-+|+||-.+++=+.++++|+|+..+.+.... ..+.|..-++++..   .+ ..+.++++++.+..
T Consensus        17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~---~~-~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA---SD-RKLEGVIEHLRQKA   84 (436)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC---cc-HHHHHHHHHHHHhc
Confidence            3444444999999999999999999999999996432 22344433444422   12 55666666665443

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed

Probab=80.56  E-value=21  Score=34.92  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh---ccceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhc
Q 024345           81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE  151 (269)
Q Consensus        81 ~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el---~l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~  151 (269)
                      .|.|.+.+.=--|. +  ..+|...|+++-++|   |+.+..-..+...-|.||||..|.+|.-+++++.-++.
T Consensus        88 ~g~~ql~v~~i~~~-g--~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~  158 (438)
T PRK00286         88 RGDYQLIVEEIEPA-G--IGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRR  158 (438)
T ss_pred             CCCEEEEEEEeeeC-C--ccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHh
Confidence            45565444322342 3  367777777776554   44433333455566899999999999999999876544

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=80.31  E-value=25  Score=31.98  Aligned_cols=81  Identities=10%  Similarity=-0.026  Sum_probs=57.3

Q ss_pred             cceEEEEEEcCCCcC--hHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345           40 LTHGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (269)
Q Consensus        40 ~~~~iItV~G~DrpG--IVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~  117 (269)
                      ...|.+++.|.+..+  +...+-+.|.+.+..+.++++......+...+.+++....  .+..++.+...+++.+=+...
T Consensus       140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~--~~~~~le~iv~~L~~~pgV~~  217 (225)
T PRK15385        140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA--DYRKTRELIISRIGDNDNITA  217 (225)
T ss_pred             ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC--CchhhHHHHHHHHhCCCCeEE
Confidence            357888899988664  6899999999999999999985333345666777776553  245666666667766666555


Q ss_pred             eeeee
Q 024345          118 SVVRV  122 (269)
Q Consensus       118 ~~~~~  122 (269)
                      ..|+.
T Consensus       218 v~W~~  222 (225)
T PRK15385        218 IHWSI  222 (225)
T ss_pred             EEEEe
Confidence            56653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3o1l_A	302	Crystal Structure Of A Formyltetrahydrofolate Defor		9e-16
3obi_A	288	Crystal Structure Of A Formyltetrahydrofolate Defor		4e-11
3nrb_A	287	Crystal Structure Of A Formyltetrahydrofolate Defor		6e-11
3lou_A	292	Crystal Structure Of Formyltetrahydrofolate Deformy		3e-07
3n0v_A	286	Crystal Structure Of A Formyltetrahydrofolate Defor		2e-06

>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 13/176 (7%)
Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
           V  CPD VGIVAK+S  +AS  G I  A          F+ R E   D + +  +   E 
Sbjct: 26  VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           F  +++ F+      R+ D   K +V + AS++ HCL D L+ W   +L  +I CVISNH
Sbjct: 86  FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCA-----KXXXXXXXXXXXVQNTDFLVLARYMQV 216
                  +   +E H IPY+++       +               D +VLARY Q+
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQI 193

>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 12/173 (6%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD  GIV+ +S  +   G NIL A  +   +   F+ R  F       P   +   F  
Sbjct: 13  CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           ++  F          D + + KV +L S+ +HCL D LY W+ G L    T ++SNH R 
Sbjct: 73  IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPR- 128
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQV 216
                    +   IP YH+   K                 +TD +VLARY Q+
Sbjct: 129 ---ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQI 178

>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           C D  GIV+++S  + + G NI+ A+ F  E  + F+ R      P+    +  +  F K
Sbjct: 14  CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNA---MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           + + +NA    R     P  D K KV +  SK +HCL D LY  + G+L  E+  +ISNH
Sbjct: 72  VVEKYNAEWWFR-----PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNH 125
Query: 166 DRGPNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQV 216
            R      +       IP+HYL      K            Q+  D +VLARY Q+
Sbjct: 126 PR----EALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQI 177

>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
           CP   G VA +   +      +    VF  +    F+ R  F    D      + +  +F
Sbjct: 17  CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
             +++ F   R    + D+  + KV +  SK EHCL D L+ W+ G+L  +I  ++SNH 
Sbjct: 77  EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQV 216
           D  P         +HG+P+ +  + A            V  T   + ++LARY QV
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQV 183

>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CP  +G V  ++  +  +   +     F   +   F+ R EF     + P +  DE  F+
Sbjct: 15  CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
             L++   A      +   + + KV +  SK +HCL D LY  + G+L  ++  V+SNH 
Sbjct: 69  AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQV 216
           D  P +H       H IPY++               +Q       + ++LARY QV
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQV 178
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	7e-63
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	1e-61
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	2e-61
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	7e-61
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	6e-57
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	1e-08
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	2e-08
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	3e-08
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	3e-08
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	4e-08
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	7e-08
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	1e-07
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	1e-07
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	1e-07
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302

 Score =  198 bits (506), Expect = 7e-63
 Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 30  EPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
              E+     +     V  CPD VGIVAK+S  +AS  G I  A          F+ R E
Sbjct: 10  HHHENLYFQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE 69

Query: 90  FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149
              D + +  +   E F  +++ F+      R+ D   K +V ++AS++ HCL D L+ W
Sbjct: 70  IRADTLPFDLDGFREAFTPIAEEFSM---DWRITDSAQKKRVVLMASRESHCLADLLHRW 126

Query: 150 QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--N 204
              +L  +I CVISNH       +   +E H IPY+++    ++      E+  LV    
Sbjct: 127 HSDELDCDIACVISNHQ-----DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQ 181

Query: 205 TDFLVLARYMQV 216
            D +VLARYMQ+
Sbjct: 182 ADVVVLARYMQI 193

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288

 Score =  195 bits (497), Expect = 1e-61
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 39  TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP 98
                +    CPD  GIV+ +S  +   G NIL A  +   +   F+ R  F       P
Sbjct: 3   PHHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIP 62

Query: 99  REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEI 158
              +   F  ++  F        + D + + KV +L S+ +HCL D LY W+ G L +  
Sbjct: 63  LASLRTGFGVIAAKFTM---GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIP 119

Query: 159 TCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARY 213
           T ++SNH R          +   IP+++    K+   ++E  +  L+   +TD +VLARY
Sbjct: 120 TAIVSNHPR----ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARY 175

Query: 214 MQV 216
           MQ+
Sbjct: 176 MQI 178

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292

 Score =  194 bits (496), Expect = 2e-61
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 35  SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IF 92
           SV       +    CP   G VA +   +      +    VF  +    F+ R  F    
Sbjct: 3   SVPQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD 62

Query: 93  DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG 152
           D      + +  +F  +++ F        + D+  + KV ++ SK EHCL D L+ W+ G
Sbjct: 63  DADALRVDALRREFEPIAERFRMQ---WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMG 119

Query: 153 KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQNT--DF 207
           +L ++I  ++SNH             +HG+P+ +     +   ++E + L++ + +  + 
Sbjct: 120 ELKMDIVGIVSNHP-----DFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAEL 174

Query: 208 LVLARYMQV 216
           ++LARYMQV
Sbjct: 175 VILARYMQV 183

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286

 Score =  193 bits (492), Expect = 7e-61
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 37  SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK 96
           S      I    CP  +G V  ++  +  +   +     F   +   F+ R EF      
Sbjct: 3   SRAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D 61

Query: 97  WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPV 156
           +          + S+ F        +   + + KV ++ SK +HCL D LY  + G+L +
Sbjct: 62  FDEAGFRAGLAERSEAFGM---AFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM 118

Query: 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLA 211
           ++  V+SNH       +      H IPY++     ++   +E ++L++++    + ++LA
Sbjct: 119 DVVAVVSNHP-----DLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILA 173

Query: 212 RYMQV 216
           RYMQV
Sbjct: 174 RYMQV 178

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287

 Score =  182 bits (465), Expect = 6e-57
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 38  PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW 97
                 +    C D  GIV+++S  + + G NI+ A+ F  E  + F+ R          
Sbjct: 3   NKNNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAG- 61

Query: 98  PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 157
                +  F K+ + +NA            + KV ++ SK +HCL D LY  + G+L +E
Sbjct: 62  -VNDFNSAFGKVVEKYNA---EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME 117

Query: 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLAR 212
           +  +ISNH R      +       IP+HYL         +E ++  +V     D +VLAR
Sbjct: 118 VVGIISNHPR----EALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLAR 173

Query: 213 YMQV 216
           YMQ+
Sbjct: 174 YMQI 177

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 127 PKYKVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
            + +V VL S      +    L      +   +  V I+CVISN+     +  +   + +
Sbjct: 7   KELRVGVLISGRGSNLEA---LAKA---FSTEESSVVISCVISNN---AEARGLLIAQSY 57

Query: 181 GIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQV 216
           GIP   +  K  +  E +  +++  + D + LA +M +
Sbjct: 58  GIPTFVVKRKPLD-IEHISTVLREHDVDLVCLAGFMSI 94

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 24/109 (22%)

Query: 123 PDIDPKYKVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176
           P    + +V +  S      +    L+      Q    P EI  V S+      +  +  
Sbjct: 2   PGSMKRNRVVIFISGGGSNME---ALIRAA---QAPGFPAEIVAVFSDK---AEAGGLAK 52

Query: 177 LERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
            E  GI       K+       E+ +L  +     D + LA YM   R+
Sbjct: 53  AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM---RL 98

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 22/101 (21%)

Query: 130 KVAVLAS-----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           +VA+ AS      +   ++      + G+LP E+  +I++    P + V+  ++ H IP 
Sbjct: 4   RVAIFASGSGTNAEA--IIQSQ---KAGQLPCEVALLITDK---PGAKVVERVKVHEIPV 55

Query: 185 HYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
             L  K        E E+++ ++    DF+VLA YM   R+
Sbjct: 56  CALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM---RL 93

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 22/117 (18%)

Query: 114 NAMRSVVRVPDIDPKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           +   S   +       ++ VL S      Q   ++D   G +EG++P  +  VIS+    
Sbjct: 8   HHHSSGENLYFQGHMIRIGVLISGSGTNLQ--AILD---GCREGRIPGRVAVVISDR--- 59

Query: 169 PNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
            +++ +    R G+   ++           +  L E +Q    D + LA YM   R+
Sbjct: 60  ADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM---RL 113

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 28/104 (26%)

Query: 130 KVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           ++AV AS          +          + G LP  +  ++ +    P + VI    R  
Sbjct: 5   RLAVFASGSGTNFQAIVDAA--------KRGDLPARVALLVCDR---PGAKVIERAAREN 53

Query: 182 IPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
           +P      K+       E E+L  ++    D++ LA YM   R+
Sbjct: 54  VPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM---RL 94

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 130 KVAVLAS-----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
            + VL S      Q   ++D     +  K+   +  V SN     ++  +    + GI  
Sbjct: 2   NIVVLISGNGSNLQ--AIIDA---CKTNKIKGTVRAVFSNK---ADAFGLERARQAGIAT 53

Query: 185 HYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
           H L A         + EL+  +     D +VLA +M   RI
Sbjct: 54  HTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM---RI 91

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 25/115 (21%)

Query: 116 MRSVVRVPDIDPKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN 170
           ++  +RVP   P  ++ VLAS      +   L+D       G  P  +  V  + +    
Sbjct: 1   VQEPLRVPPSAPA-RLVVLASGTGSLLR--SLLD----AAVGDYPARVVAVGVDRE---- 49

Query: 171 SHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
                      +P   +   +    +  +  +         D +V A +M   RI
Sbjct: 50  CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM---RI 101

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 23/104 (22%)

Query: 127 PKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
               + VL S      Q   ++       +  L +EI  VISN     +++ ++  ++  
Sbjct: 4   EPLPIVVLISGNGTNLQA--IIGA----IQKGLAIEIRAVISNR---ADAYGLKRAQQAD 54

Query: 182 IPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
           IP H +  +E     + E  L + +   +   +VLA +M   R 
Sbjct: 55  IPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM---RK 95

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 24/102 (23%)

Query: 130 KVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
           K+ VL S      +    ++D +   + GK+   I  VIS++   P ++ I   ++H + 
Sbjct: 3   KIGVLVSGRGSNLQ---AIIDAI---ESGKVNASIELVISDN---PKAYAIERCKKHNVE 53

Query: 184 YHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
              +  KE     E EE +   ++    + +VLA +M   RI
Sbjct: 54  CKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM---RI 92

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 24/102 (23%)

Query: 130 KVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
           +VAVL S      +    L+D     +E     +I  VISN         +   ER GIP
Sbjct: 2   RVAVLISGTGSNLQ---ALIDS---TREPNSSAQIDIVISNK---AAVAGLDKAERAGIP 52

Query: 184 YHYLCAKE----NEREEELLELVQ--NTDFLVLARYMQVNRI 219
              +  K      E +  +  +++  + D + LA +M   RI
Sbjct: 53  TRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM---RI 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 7e-07
 Identities = 40/250 (16%), Positives = 88/250 (35%), Gaps = 52/250 (20%)

Query: 32  IESSVSPTLTHGI--HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
           ++      L+     H+    D V    +L   + S+   +     FV E   + Y   +
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINY---K 92

Query: 90  FIFDPIKWPREQ--MDEDFF--KLSKMFNAMRSVVR--VPDIDPKYKV-AVLASKQEHCL 142
           F+  PIK  + Q  M    +  +  +++N  +   +  V  + P  K+   L   +    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 143 VDFLYGWQ-EGK--LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL 199
           V  + G    GK  + ++   V  ++         +   +      +L  K     E +L
Sbjct: 153 V-LIDGVLGSGKTWVALD---VCLSY---------KVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 200 ELVQN------TDFLVLARYMQVNRIRLYVAQL-FSCLVTEQ-----LTVLNSSLGGINI 247
           E++Q        ++   + +    ++R++  Q     L+  +     L VL       N+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------NV 253

Query: 248 S----LSSFD 253
                 ++F+
Sbjct: 254 QNAKAWNAFN 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 47/288 (16%), Positives = 88/288 (30%), Gaps = 72/288 (25%)

Query: 10  SLQQVVKFTNRSFKSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIA---- 64
               ++K+ +   + L     P E  + +P     I          I   + + +A    
Sbjct: 303 VKSLLLKYLDCRPQDL-----PREVLTTNP-RRLSI----------IAESIRDGLATWDN 346

Query: 65  ------SRGGNILAA--DVFVP-EKKNVFYSRSEFIFD-----PIK-----WPR------ 99
                  +   I+ +  +V  P E + +F   S  +F      P       W        
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 100 EQMDEDFFKLSKMF-NAMRSVVRVPDIDPKYKVAVLASKQEH-CLVDFLYGWQEGKLPVE 157
             +     K S +      S + +P I  + KV +      H  +VD  Y          
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-Y---------N 454

Query: 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVN 217
           I     + D  P  ++ ++   H I +H    +  ER      +  +  FL         
Sbjct: 455 IPKTFDSDDLIPP-YLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFL-------EQ 505

Query: 218 RIRLY-VAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKF 264
           +IR    A   S  +   L  L      I  +   ++  +   ++L F
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 49/179 (27%)

Query: 104 EDFFK--LSKMFNAMRSVVRVPDIDPK--YKVAVLASKQEHCLVDFL-------YGWQEG 152
           +D  K  LSK    +  ++   D           L SKQE  +  F+       Y +   
Sbjct: 39  QDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--- 93

Query: 153 KLPVEITCVISNHDRGPNSHVIRFLERHGIPYH--YLCAKEN-EREEELLELVQNTDFLV 209
                +   I    R P+     ++E+    Y+   + AK N  R +  L+L Q      
Sbjct: 94  -----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----A 143

Query: 210 LARYMQVNRIRLYVAQLF-------SCLVTEQLTVLNSSLGGINISLSSFDATIEWISL 261
           L   ++  +    V  +        + +  +    L+  +          D  I W++L
Sbjct: 144 LLE-LRPAK---NVL-IDGVLGSGKTWVALD--VCLSYKV------QCKMDFKIFWLNL 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	100.0
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	100.0
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	100.0
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	100.0
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	100.0
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	100.0
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	100.0
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	100.0
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	100.0
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	100.0
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	100.0
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	100.0
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	100.0
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	100.0
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	100.0
1fmt_A	314	Methionyl-tRNA FMet formyltransferase; initiator t	99.97
2bln_A	305	Protein YFBG; transferase, formyltransferase, L-AR	99.96
3q0i_A	318	Methionyl-tRNA formyltransferase; structural genom	99.96
3rfo_A	317	Methionyl-tRNA formyltransferase; structural genom	99.96
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	99.96
2bw0_A	329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	99.95
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.95
1zgh_A	260	Methionyl-tRNA formyltransferase; southeast collab	99.76
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.66
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	99.51
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.48
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.4
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.39
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.36
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.5
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.27
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.95
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.67
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	97.62
2f06_A	144	Conserved hypothetical protein; structural genomic	97.47
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.44
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.41
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.28
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.97
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.47
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.42
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.17
2f06_A	144	Conserved hypothetical protein; structural genomic	96.14
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.85
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	95.7
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.13
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	94.85
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	94.18
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.84
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	93.61
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	93.56
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	92.97
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	92.4
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	91.61
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	91.52
3rjz_A	237	N-type ATP pyrophosphatase superfamily; structural	90.53
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	90.26
4had_A	350	Probable oxidoreductase protein; structural genomi	90.17
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	90.14
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	90.11
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.9
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	89.68
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	88.13
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	87.22
3t38_A	213	Arsenate reductase; low molecular weight tyrosine	85.88
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	85.34
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	85.13
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	85.06
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	84.85
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	83.72
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	83.0
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	82.86
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	82.73
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	82.68
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	82.59
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	82.32
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	81.87
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	81.63
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	81.43
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	81.41
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	80.92
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	80.86
1zhv_A	134	Hypothetical protein ATU0741; NESG, ATR8, structur	80.84
3rh0_A	148	Arsenate reductase; oxidoreductase; 1.72A {Coryneb	80.47

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=100.00  E-value=5.6e-58  Score=421.48  Aligned_cols=218  Identities=21%  Similarity=0.352  Sum_probs=196.8

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      +..+.+++|||+|+||||||++||++|+++|+||++++|+.+..+|.|+|+++++.|+ +.+.++|+++|+++|++++ |
T Consensus         3 ~~~~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~l~-m   80 (286)
T 3n0v_A            3 SRAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAERSEAFG-M   80 (286)
T ss_dssp             ----CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHHHGGGT-C
T ss_pred             cccCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHHHHHcC-C
Confidence            3446789999999999999999999999999999999999767799999999999986 7889999999999999998 5


Q ss_pred             eeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc--
Q 024345          117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE--  193 (269)
Q Consensus       117 ~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~--  193 (269)
                      +  |++...++|+||+||+||+||||++|+++++.|.++++|++||||++   ++  .++|+++|||+++++.+. ++  
T Consensus        81 ~--~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~---~~--~~~A~~~gIp~~~~~~~~~~r~~  153 (286)
T 3n0v_A           81 A--FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHP---DL--EPLAHWHKIPYYHFALDPKDKPG  153 (286)
T ss_dssp             E--EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSS---TT--HHHHHHTTCCEEECCCBTTBHHH
T ss_pred             E--EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcH---HH--HHHHHHcCCCEEEeCCCcCCHHH
Confidence            6  55677788999999999999999999999999999999999999994   33  577999999999988432 22  


Q ss_pred             hHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          194 REEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       194 ~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +|+++++.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+++|++++|+|+|+||+
T Consensus       154 ~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iN-----iHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~  228 (286)
T 3n0v_A          154 QERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAIN-----IHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINN  228 (286)
T ss_dssp             HHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEE-----EEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEE-----eccccccCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence            3567888888  899999999999999   9999999999     99999999999999999999999999999999986

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=100.00  E-value=5e-58  Score=424.61  Aligned_cols=217  Identities=31%  Similarity=0.455  Sum_probs=197.7

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~  118 (269)
                      .+.+++|||+|+||||||++||++|+++|+||++++|+.++.+|.|+||++++.|+...+.++|+++|++++++++ |+ 
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~-m~-   96 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFS-MD-   96 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHT-CE-
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhC-Ce-
Confidence            4577999999999999999999999999999999999987789999999999988644789999999999999998 56 


Q ss_pred             eeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCc--hH
Q 024345          119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE--RE  195 (269)
Q Consensus       119 ~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~--~e  195 (269)
                       |++...++|+||+||+||+|+||++|+++++.|.++++|++||||++   +  +.++|+++|||+++++.+ .++  .|
T Consensus        97 -~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~---~--~~~~A~~~gIp~~~~~~~~~~r~~~~  170 (302)
T 3o1l_A           97 -WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQ---D--LRSMVEWHDIPYYHVPVDPKDKEPAF  170 (302)
T ss_dssp             -EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSS---T--THHHHHTTTCCEEECCCCSSCCHHHH
T ss_pred             -eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcH---H--HHHHHHHcCCCEEEcCCCcCCHHHHH
Confidence             45566778999999999999999999999999999999999999994   3  468899999999998732 222  35


Q ss_pred             HHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          196 EELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       196 ~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +++++.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+++|+++||+|+||||+
T Consensus       171 ~~~~~~l~~~~~DliVlagym~IL~~~~l~~~~~~~IN-----iHpSlLP~frG~~p~~~Ai~~G~k~tG~TvH~v~~  243 (302)
T 3o1l_A          171 AEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVIN-----IHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTE  243 (302)
T ss_dssp             HHHHHHHHHTTCSEEEESSCCSCCCTTHHHHTTTCEEE-----EESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhCCeEE-----eCcccccCCCCccHHHHHHHcCCCeEEEEEEEECC
Confidence            77888888  899999999999999   9999999999     99999999999999999999999999999999986

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=100.00  E-value=9.9e-58  Score=420.92  Aligned_cols=219  Identities=21%  Similarity=0.370  Sum_probs=195.3

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHhhhhhhc
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD--PIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p--~~~~~~~~L~e~L~~la~el~  114 (269)
                      +..+.+++||++|+||||||++||++|+++|+||++++|+.+..+|.|+||++++.+  +...+.++|+++|++++++++
T Consensus         5 ~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~   84 (292)
T 3lou_A            5 PQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFR   84 (292)
T ss_dssp             ---CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHT
T ss_pred             cCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcC
Confidence            455678999999999999999999999999999999999977779999999999987  434689999999999999998


Q ss_pred             cceeeeeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc
Q 024345          115 AMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE  193 (269)
Q Consensus       115 l~~~~~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~  193 (269)
                       |+  |++.+.++|+||+||+||+||||++|+++++.|+++++|++||||++   ++  .++|+++|||+++++.+. ++
T Consensus        85 -m~--~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~---~~--~~~A~~~gIp~~~~~~~~~~r  156 (292)
T 3lou_A           85 -MQ--WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHP---DF--APLAAQHGLPFRHFPITADTK  156 (292)
T ss_dssp             -CE--EEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSS---TT--HHHHHHTTCCEEECCCCSSCH
T ss_pred             -cE--EEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcH---HH--HHHHHHcCCCEEEeCCCcCCH
Confidence             56  45566778899999999999999999999999999999999999994   44  567999999999988432 22


Q ss_pred             --hHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEe
Q 024345          194 --REEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRR  266 (269)
Q Consensus       194 --~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v  266 (269)
                        +|+++++.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+++|++++|+|+|+|
T Consensus       157 ~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iN-----iHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v  231 (292)
T 3lou_A          157 AQQEAQWLDVFETSGAELVILARYMQVLSPEASARLANRAIN-----IHHSFLPGFKGAKPYHQAHARGVKLIGATAHFV  231 (292)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEE-----EEEECSSCCCSSCHHHHHHHHTCSEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhcCCeEE-----eCCCcCcCCCCccHHHHHHHcCCCeEEEEEEEE
Confidence              3567888888  899999999999999   9999999999     999999999999999999999999999999999


Q ss_pred             cc
Q 024345          267 TF  268 (269)
Q Consensus       267 ~~  268 (269)
                      |+
T Consensus       232 ~~  233 (292)
T 3lou_A          232 TD  233 (292)
T ss_dssp             CS
T ss_pred             cC
Confidence            86

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.3e-57  Score=419.54  Aligned_cols=217  Identities=26%  Similarity=0.415  Sum_probs=196.7

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      +.+++|||+|+||||||++||++|+++|+||++++|+.+..+|.|+|+++++.|+...+.++|+++|++++++++ |+  
T Consensus         4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~-m~--   80 (288)
T 3obi_A            4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT-MG--   80 (288)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTT-CE--
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcC-CE--
Confidence            356999999999999999999999999999999999877789999999999998645789999999999999998 56  


Q ss_pred             eeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc--hHH
Q 024345          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE--REE  196 (269)
Q Consensus       120 ~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~--~e~  196 (269)
                      |++.+.++|+|||||+||+||||++|+++++.|+++++|++||||+|+    .+.++|+++|||+++++.+. ++  +|+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p~----~~~~~A~~~gIp~~~~~~~~~~r~~~~~  156 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR----ETFSGFDFGDIPFYHFPVNKDTRRQQEA  156 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSCG----GGSCCTTTTTCCEEECCCCTTTHHHHHH
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCCh----hHHHHHHHcCCCEEEeCCCcccHHHHHH
Confidence            455666789999999999999999999999999999999999999931    25688999999999988432 22  356


Q ss_pred             HHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          197 ELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       197 ~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++++.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+++|++++|+|+|+||+
T Consensus       157 ~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~~iN-----iHpSlLP~~rG~~p~~~A~~~G~~~~G~Tvh~v~~  228 (288)
T 3obi_A          157 AITALIAQTHTDLVVLARYMQILSDEMSARLAGRCIN-----IHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTS  228 (288)
T ss_dssp             HHHHHHHHHTCCEEEESSCCSCCCHHHHHHTTTSEEE-----EEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcCCeEE-----eCcccccCCCCchHHHHHHHcCCCEEEEEEEEECC
Confidence            7888888  899999999999999   9999999999     99999999999999999999999999999999986

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=100.00  E-value=1.1e-57  Score=419.82  Aligned_cols=215  Identities=24%  Similarity=0.372  Sum_probs=193.6

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      ..+++|||+|+||||||++||++|+++|+||+|++|+.+..+|.|+||++++.|+  .+.++|+++|++++++++ |+  
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~~la~~~~-m~--   79 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFGKVVEKYN-AE--   79 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHHHHHGGGT-CE--
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHHHHHHHcC-Ce--
Confidence            4579999999999999999999999999999999998777899999999999874  456799999999999998 56  


Q ss_pred             eeecCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C--chHH
Q 024345          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREE  196 (269)
Q Consensus       120 ~~~~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~e~  196 (269)
                      |++.+.++|+||+||+||+||||++|+++++.|+++++|++||||++   ++ +.++|+++|||+++++.+. +  .+|+
T Consensus        80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~~---~a-~~~~A~~~gIp~~~~~~~~~~r~~~~~  155 (287)
T 3nrb_A           80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHP---RE-ALSVSLVGDIPFHYLPVTPATKAAQES  155 (287)
T ss_dssp             EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSC---GG-GCCCCCCTTSCEEECCCCGGGHHHHHH
T ss_pred             eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCCh---HH-HHHHHHHcCCCEEEEeccCcchhhHHH
Confidence            45566778999999999999999999999999999999999999994   44 7789999999999988432 2  2356


Q ss_pred             HHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          197 ELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       197 ~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++++.++  ++|++|+|||||||+   ++.|++|+||     +||||||+|||++|++||+++|+++||+|+||||+
T Consensus       156 ~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~~iN-----iHpSlLP~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~  227 (287)
T 3nrb_A          156 QIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCIN-----IHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTA  227 (287)
T ss_dssp             HHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTTSEEE-----EESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccCCeEE-----ECcccccCCCCchHHHHHHHcCCCeEEEEEEEECC
Confidence            7888887  899999999999999   9999999999     99999999999999999999999999999999986

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}

Probab=100.00  E-value=1.3e-37  Score=274.85  Aligned_cols=133  Identities=22%  Similarity=0.324  Sum_probs=122.7

Q ss_pred             CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCc---hHHHHHHHhc
Q 024345          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ  203 (269)
Q Consensus       128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~---~e~~l~~~l~  203 (269)
                      |+|||||+||+|+||++|++++++|.++++|++||||+   ++++++++|+++|||+++++.+ ..+   +|+++++.++
T Consensus         2 m~riavl~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~---~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~   78 (211)
T 3p9x_A            2 MKRVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLK   78 (211)
T ss_dssp             -CEEEEECCTTCHHHHHHHHHHHTTCCSSEEEEEEESC---SSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCchHHHHHHHHHHcCCCCcEEEEEEECC---CCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHH
Confidence            57999999999999999999999999999999999998   6789999999999999988743 222   2567888887


Q ss_pred             --cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 --NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 --~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                        ++|++|++|||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        79 ~~~~Dliv~agy~~Il~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  143 (211)
T 3p9x_A           79 EKQIDFVVLAGYMRLVGPTLLGAYEGRIVN-----IHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDE  143 (211)
T ss_dssp             HTTCCEEEESSCCSCCCHHHHHHHTTSEEE-----EESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             hcCCCEEEEeCchhhcCHHHHhhccCCeEE-----ECCccCCCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence              899999999999999   9999999999     99999999999999999999999999999999986

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0

Probab=100.00  E-value=5.8e-37  Score=271.42  Aligned_cols=134  Identities=22%  Similarity=0.264  Sum_probs=122.0

Q ss_pred             CCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C---chHHHHHHH
Q 024345          126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLEL  201 (269)
Q Consensus       126 ~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~e~~l~~~  201 (269)
                      .+++|||||+||+|+||++|++++++| ++++|++|+||+   ++++++++|+++|||+++++.+. .   .+|+++.+.
T Consensus         3 ~~~~riavl~SG~Gsnl~all~~~~~~-~~~eI~~Vis~~---~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~   78 (215)
T 3tqr_A            3 REPLPIVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNR---ADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKT   78 (215)
T ss_dssp             -CCEEEEEEESSCCHHHHHHHHHHHTT-CSEEEEEEEESC---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCCcHHHHHHHHHHHcC-CCCEEEEEEeCC---cchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHH
Confidence            367899999999999999999999999 899999999998   67888999999999999987432 2   235778888


Q ss_pred             hc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          202 VQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       202 l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++  ++|++|+++||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        79 l~~~~~Dliv~agy~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  145 (215)
T 3tqr_A           79 IDHYDPKLIVLAGFMRKLGKAFVSHYSGRMIN-----IHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTE  145 (215)
T ss_dssp             HHTTCCSEEEESSCCSCCCHHHHHHTTTSEEE-----EESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECC-
T ss_pred             HHhcCCCEEEEccchhhCCHHHHhhccCCeEE-----eCcccCCCCCChhHHHHHHHcCCCeEEEEEEEEcC
Confidence            88  899999999999999   9999999999     99999999999999999999999999999999986

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}

Probab=100.00  E-value=9.1e-37  Score=269.10  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=123.0

Q ss_pred             CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc---hHHHHHHHh
Q 024345          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE---REEELLELV  202 (269)
Q Consensus       127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~---~e~~l~~~l  202 (269)
                      .|+||+||+||+|+||++|++++++|.++++|++||||+   |+++++++|+++|||+++++.+. ..   +|+++.+.+
T Consensus         6 ~~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~---~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l   82 (209)
T 4ds3_A            6 KRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDK---AEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAAL   82 (209)
T ss_dssp             CCEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESC---TTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred             CCccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECC---cccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999998   56788999999999999987432 22   357788888


Q ss_pred             c--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          203 Q--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       203 ~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +  ++|++|+++||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        83 ~~~~~Dliv~agy~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  148 (209)
T 4ds3_A           83 DVLKPDIICLAGYMRLLSGRFIAPYEGRILN-----IHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTE  148 (209)
T ss_dssp             HHHCCSEEEESSCCSCCCHHHHGGGTTCEEE-----EESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCC
T ss_pred             HhcCCCEEEEeccccCcCHHHHhhccCCeEE-----ECCccccCCCChhHHHHHHHcCCCeEEEEEEEEcC
Confidence            8  899999999999999   9999999999     99999999999999999999999999999999986

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0

Probab=100.00  E-value=8.6e-37  Score=270.29  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=121.8

Q ss_pred             CCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345          125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (269)
Q Consensus       125 ~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-  203 (269)
                      ..+|+||+||+||+|+||++|++++++|.++++|++||||+   ++++++++|+++|||+++++.+.. .++++.+.++ 
T Consensus         5 ~~~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~---~~a~~l~~A~~~gIp~~~~~~~~~-~~~~~~~~L~~   80 (215)
T 3kcq_A            5 MKKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNN---AEARGLLIAQSYGIPTFVVKRKPL-DIEHISTVLRE   80 (215)
T ss_dssp             --CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESC---TTCTHHHHHHHTTCCEEECCBTTB-CHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCC---cchHHHHHHHHcCCCEEEeCcccC-ChHHHHHHHHH
Confidence            35678999999999999999999999999999999999998   567789999999999999874321 2467888887 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|+|+||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        81 ~~~Dlivlagy~~IL~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  144 (215)
T 3kcq_A           81 HDVDLVCLAGFMSILPEKFVTDWHHKIIN-----IHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQ  144 (215)
T ss_dssp             TTCSEEEESSCCSCCCHHHHHHTTTSEEE-----EESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             hCCCEEEEeCCceEeCHHHHhhccCCeEE-----ECcccccCCCCccHHHHHHHcCCCeEEEEEEEEcC
Confidence             899999999999999   9999999999     99999999999999999999999999999999986

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*

Probab=100.00  E-value=3.5e-36  Score=266.38  Aligned_cols=134  Identities=11%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             CCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CC---chHHHHHH
Q 024345          125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLE  200 (269)
Q Consensus       125 ~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~---~~e~~l~~  200 (269)
                      ...++||+||+||+|+||++|+++++. .++++|++|+||+   + ++++++|+++|||+++.+.+ ..   .+|+++.+
T Consensus         9 ~~~~~ri~vl~SG~gsnl~all~~~~~-~~~~eI~~Vis~~---~-a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~   83 (215)
T 3da8_A            9 PSAPARLVVLASGTGSLLRSLLDAAVG-DYPARVVAVGVDR---E-CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITA   83 (215)
T ss_dssp             CCSSEEEEEEESSCCHHHHHHHHHSST-TCSEEEEEEEESS---C-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEEEeCChHHHHHHHHHHhc-cCCCeEEEEEeCC---c-hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHH
Confidence            467889999999999999999999865 6788999999998   3 68999999999999998633 11   23567888


Q ss_pred             Hhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          201 LVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       201 ~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      .++  ++|++|+|+||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        84 ~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  151 (215)
T 3da8_A           84 ATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLN-----THPALLPAFPGTHGVADALAYGVKVTGATVHLVDA  151 (215)
T ss_dssp             HHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEE-----EESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHhhCCCEEEEcCchhhCCHHHHhhccCCeEE-----eCcccccCCCCchHHHHHHHcCCCeEEEEEEEEcC
Confidence            887  899999999999999   9999999999     99999999999999999999999999999999986

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*

Probab=100.00  E-value=6.1e-36  Score=264.12  Aligned_cols=132  Identities=20%  Similarity=0.237  Sum_probs=121.2

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCc---hHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~---~e~~l~~~l~-  203 (269)
                      +||+||+||+|+||++|++++++|.++++|++|+||+   ++++++++|+++|||+++++.+ ..+   +++++.+.++ 
T Consensus         1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (212)
T 1jkx_A            1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNK---ADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (212)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESC---TTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCC---CchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHh
Confidence            5999999999999999999999999899999999998   5678999999999999998633 222   2567888887 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|++|||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        78 ~~~Dliv~agy~~il~~~~l~~~~~~~iN-----iHpSlLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~  141 (212)
T 1jkx_A           78 YAPDVVVLAGFMRILSPAFVSHYAGRLLN-----IHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTD  141 (212)
T ss_dssp             GCCSEEEESSCCSCCCHHHHHHTTTSEEE-----EESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             cCCCEEEEeChhhhCCHHHHhhccCCEEE-----EccCcccCCCCccHHHHHHHcCCCceEEEEEEEcc
Confidence             899999999999999   9999999999     99999999999999999999999999999999986

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*

Probab=100.00  E-value=1.1e-35  Score=262.08  Aligned_cols=132  Identities=20%  Similarity=0.220  Sum_probs=120.4

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCc---hHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~---~e~~l~~~l~-  203 (269)
                      +|||||+||+|+||++|++++++|.++++|++|+||+   +++.++++|+++|||+++++.+ ..+   +++++.+.++ 
T Consensus         1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (209)
T 1meo_A            1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNK---AAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEE   77 (209)
T ss_dssp             CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCC---CChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            5999999999999999999999998889999999998   5677899999999999987743 222   2467888887 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|+++||+||+   ++.|++|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        78 ~~~Dliv~a~y~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  141 (209)
T 1meo_A           78 FSIDIVCLAGFMRILSGPFVQKWNGKMLN-----IHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAE  141 (209)
T ss_dssp             TTCCEEEEESCCSCCCHHHHHHTTTSEEE-----EESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC
T ss_pred             cCCCEEEEcchhhhCCHHHHhhhcCCEEE-----EccCcCcCCCCccHHHHHHHcCCCcEEEEEEEECC
Confidence             899999999999999   9999999999     99999999999999999999999999999999986

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.2e-35  Score=259.35  Aligned_cols=133  Identities=19%  Similarity=0.301  Sum_probs=121.7

Q ss_pred             CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc---hHHHHHHHhc
Q 024345          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE---REEELLELVQ  203 (269)
Q Consensus       128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~---~e~~l~~~l~  203 (269)
                      |+||+||+||+|+|++++++++.++.++++|++|+||+   ++++++++|+++|||+++++.+. .+   +|+++.+.++
T Consensus         3 m~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~---~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~   79 (212)
T 3av3_A            3 MKRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDR---PGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELK   79 (212)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCC---CCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHH
Confidence            58999999999999999999999998889999999998   56799999999999999877432 22   2567888887


Q ss_pred             --cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 --NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 --~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                        ++|++|+||||+||+   ++.|++|+||     +||||||+|||++|++||+++|+++||+|+|+||+
T Consensus        80 ~~~~Dliv~a~y~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  144 (212)
T 3av3_A           80 GRQIDWIALAGYMRLIGPTLLSAYEGKIVN-----IHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDE  144 (212)
T ss_dssp             HTTCCEEEESSCCSCCCHHHHHHTTTCEEE-----EESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCS
T ss_pred             hcCCCEEEEchhhhhCCHHHHhhhcCCEEE-----EecCcCCCCCCcCHHHHHHHcCCCeEEEEEEEECC
Confidence              899999999999999   9999999999     99999999999999999999999999999999986

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=100.00  E-value=3.2e-35  Score=262.38  Aligned_cols=138  Identities=19%  Similarity=0.250  Sum_probs=124.6

Q ss_pred             cCCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc---hHHHH
Q 024345          123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE---REEEL  198 (269)
Q Consensus       123 ~~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~---~e~~l  198 (269)
                      +....|+||+||+||+|+|++++++++.++.++++|++|+||+   ++++++++|+++|||+++++.+. ..   +++++
T Consensus        17 ~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~   93 (229)
T 3auf_A           17 YFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDPAAYPSRTAFDAAL   93 (229)
T ss_dssp             SCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESS---TTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHH
T ss_pred             cccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCC---CchHHHHHHHHcCCCEEEECcccccchhhccHHH
Confidence            4456779999999999999999999999888789999999998   56789999999999999877432 22   25678


Q ss_pred             HHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          199 LELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       199 ~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++.++  ++|++|+|+||+||+   ++.|+.|+||     +||||||+|||++|++||+++|+++||||+|+||+
T Consensus        94 ~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~  163 (229)
T 3auf_A           94 AERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILN-----IHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTA  163 (229)
T ss_dssp             HHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEE-----EESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEE-----EccCcCcCCCCcCHHHHHHHcCCCeEEEEEEEECC
Confidence            88887  899999999999999   9999999999     99999999999999999999999999999999986

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}

Probab=100.00  E-value=7.2e-35  Score=257.69  Aligned_cols=133  Identities=17%  Similarity=0.266  Sum_probs=120.8

Q ss_pred             CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CCc---hHHHHHHHhc
Q 024345          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ  203 (269)
Q Consensus       128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~~---~e~~l~~~l~  203 (269)
                      |+||+||+||+|+|++++++++.++.++++|++|+||+   +++.++++|+++|||+++++.+ ..+   +++++.+.++
T Consensus         1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~   77 (216)
T 2ywr_A            1 MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDN---PKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELK   77 (216)
T ss_dssp             CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESC---TTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCC---CChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHH
Confidence            47999999999999999999998887778999999998   5678999999999999987743 222   2567888887


Q ss_pred             --cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 --NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 --~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                        ++|++|++|||+||+   ++.|++|+||     +||||||+|||++|++||+++|+++||+|+|+||+
T Consensus        78 ~~~~Dliv~a~y~~il~~~~l~~~~~~~iN-----iHpSLLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~  142 (216)
T 2ywr_A           78 KKGVELVVLAGFMRILSHNFLKYFPNKVIN-----IHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDE  142 (216)
T ss_dssp             HTTCCEEEESSCCSCCCHHHHTTSTTCEEE-----EESSCTTTTCSTTHHHHHHHHTCSEEEEEEEECCS
T ss_pred             hcCCCEEEEeCchhhCCHHHHhhccCCeEE-----EcCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcc
Confidence              899999999999999   9999999999     99999999999999999999999999999999986

>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A

Probab=99.97  E-value=3.7e-30  Score=239.11  Aligned_cols=127  Identities=18%  Similarity=0.178  Sum_probs=111.7

Q ss_pred             CCeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCC--------ChhHHHHHHhCCCCeEEeCCCCCchHH
Q 024345          127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREE  196 (269)
Q Consensus       127 ~~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~--------~~~v~~~a~~~gIP~~~~~~~~~~~e~  196 (269)
                      .+|||+||||++  ..||++|++.   |   ++|++|+|++|+ |        .++++++|+++|||+++.. +.  .++
T Consensus         2 ~~mrIvf~Gt~~fa~~~L~~L~~~---~---~~i~~Vvt~pd~-p~grg~~~~~~~v~~~A~~~gIpv~~~~-~~--~~~   71 (314)
T 1fmt_A            2 ESLRIIFAGTPDFAARHLDALLSS---G---HNVVGVFTQPDR-PAGRGKKLMPSPVKVLAEEKGLPVFQPV-SL--RPQ   71 (314)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT---T---CEEEEEECCCCB-C------CBCCHHHHHHHHTTCCEECCS-CS--CSH
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC---C---CcEEEEEeCCCC-ccccccccCcCHHHHHHHHcCCcEEecC-CC--CCH
Confidence            468999999999  5999999983   4   799999999765 3        3789999999999998632 22  135


Q ss_pred             HHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          197 ELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       197 ~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++.+.++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        72 ~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iN-----iHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~  143 (314)
T 1fmt_A           72 ENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCIN-----VHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDV  143 (314)
T ss_dssp             HHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEE-----EESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHHHhcCCCEEEEeeccccCCHHHHhhccCCEEE-----EcCCcCcCCCCcCHHHHHHHcCCCceEEEEEEEcc
Confidence            6777777  999999999999999   9999999999     99999999999999999999999999999999986

>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A

Probab=99.96  E-value=3.1e-30  Score=238.71  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             eeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----hhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345          129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (269)
Q Consensus       129 ~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~-----~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~  201 (269)
                      |||+||+|++  ++||++|+++   +   ++|++|+|++|+ +.     ++++++|+++|||+++.+..   .++++.+.
T Consensus         1 mrivf~gt~~fa~~~L~~L~~~---~---~~i~~Vvt~~d~-~~g~~~~~~v~~~A~~~gIpv~~~~~~---~~~~~~~~   70 (305)
T 2bln_A            1 MKTVVFAYHDMGCLGIEALLAA---G---YEISAIFTHTDN-PGEKAFYGSVARLAAERGIPVYAPDNV---NHPLWVER   70 (305)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT---T---CEEEEEECCCC-------CCCCHHHHHHHHTCCEECCSCC---CSHHHHHH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHC---C---CcEEEEEcCCCC-CCCCcCccHHHHHHHHcCCCEECCCcC---CcHHHHHH
Confidence            6999999999  5999999984   3   799999999865 22     67999999999999986532   13456677


Q ss_pred             hc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          202 VQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       202 l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        71 l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iN-----iHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~  137 (305)
T 2bln_A           71 IAQLSPDVIFSFYYRHLIYDEILQLAPAGAFN-----LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK  137 (305)
T ss_dssp             HHHTCCSEEEEESCCSCCCHHHHTTCTTCEEE-----EESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             HHhcCCCEEEEeccccccCHHHHhcCcCCEEE-----ecCCcCcCCCCccHHHHHHHcCCCcEEEEEEEECC
Confidence            76  999999999999999   9999999999     99999999999999999999999999999999986

>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}

Probab=99.96  E-value=1.8e-29  Score=234.88  Aligned_cols=128  Identities=14%  Similarity=0.088  Sum_probs=110.4

Q ss_pred             CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHH
Q 024345          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEE  197 (269)
Q Consensus       127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~  197 (269)
                      ++|||+||||+++  .||++|+++   +   ++|++|+|++|+.       ..+++.++|+++|||++... +.  .+++
T Consensus         6 ~~mrivf~Gt~~fa~~~L~~L~~~---~---~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~-~~--~~~~   76 (318)
T 3q0i_A            6 QSLRIVFAGTPDFAARHLAALLSS---E---HEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPE-NF--KSDE   76 (318)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTS---S---SEEEEEECCCC---------CCCHHHHHHHHTTCCEECCS-CS--CSHH
T ss_pred             cCCEEEEEecCHHHHHHHHHHHHC---C---CcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccC-cC--CCHH
Confidence            4689999999986  799999873   3   7999999998751       23789999999999998632 22  1346


Q ss_pred             HHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          198 LLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       198 l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +.+.++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        77 ~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iN-----iHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~  147 (318)
T 3q0i_A           77 SKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCIN-----VHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDV  147 (318)
T ss_dssp             HHHHHHTTCCSEEEESSCCSCCCHHHHTSSTTCEEE-----EESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHhhCcCCEEE-----eCCccCcCCCCcCHHHHHHHcCCCeEEEEEEEEcC
Confidence            777777  899999999999999   9999999999     99999999999999999999999999999999986

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=99.96  E-value=6e-29  Score=230.99  Aligned_cols=127  Identities=16%  Similarity=0.095  Sum_probs=109.9

Q ss_pred             CeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHHH
Q 024345          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL  198 (269)
Q Consensus       128 ~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l  198 (269)
                      +|||+||||+++  .+|++|++.   |   ++|++|+|++|+.       ..+++.++|+++|||++... +.  .++++
T Consensus         2 ~mrivf~Gtp~fa~~~L~~L~~~---~---~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~-~~--~~~~~   72 (314)
T 3tqq_A            2 SLKIVFAGTPQFAVPTLRALIDS---S---HRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPF-SL--RDEVE   72 (314)
T ss_dssp             CCEEEEEECSGGGHHHHHHHHHS---S---SEEEEEECCCC----------CCHHHHHHHHTTCCEECCS-CS--SSHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC---C---CeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcc-cC--CCHHH
Confidence            589999999997  789999873   4   7999999987752       24789999999999988632 22  13467


Q ss_pred             HHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          199 LELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       199 ~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      .+.++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+.+|+++||+|+|+||+
T Consensus        73 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iN-----iHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~  142 (314)
T 3tqq_A           73 QEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVN-----VHASLLPRWRGAAPIQRAILAGDRETGISIMQMNE  142 (314)
T ss_dssp             HHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCEEE-----EESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             HHHHHhcCCCEEEEcCcccccCHHHHhhCcCCEEE-----ecCccccCCCCccHHHHHHHcCCCeeEEEEEeeec
Confidence            77777  899999999999999   9999999999     99999999999999999999999999999999986

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A

Probab=99.95  E-value=1.1e-28  Score=230.61  Aligned_cols=131  Identities=14%  Similarity=0.031  Sum_probs=108.8

Q ss_pred             CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHHHHHHhCCCCeEEeCCCC--CchHHHHHHH
Q 024345          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKE--NEREEELLEL  201 (269)
Q Consensus       127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~~~a~~~gIP~~~~~~~~--~~~e~~l~~~  201 (269)
                      .+|||+||++++.  .+|++|++.   +   ++|++|+|.+|+. ..+++.++|+++|||+++.+...  ...++++++.
T Consensus        21 ~~mrIvf~G~~~fa~~~L~~L~~~---~---~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~   94 (329)
T 2bw0_A           21 QSMKIAVIGQSLFGQEVYCHLRKE---G---HEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAK   94 (329)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHT---T---CEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHH
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHC---C---CeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHH
Confidence            3489999987654  356666552   3   7999999977651 24689999999999999976211  1224677787


Q ss_pred             hc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          202 VQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       202 l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+++|+++||+|+|+||+
T Consensus        95 l~~~~~Dliv~a~y~~ilp~~il~~~~~g~iN-----iHpSLLP~yRG~~pi~~Ai~~G~~~tGvTvh~~~~  161 (329)
T 2bw0_A           95 YQALGAELNVLPFCSQFIPMEIISAPRHGSII-----YHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADD  161 (329)
T ss_dssp             HHTTCCSEEEESSCSSCCCHHHHTCSTTCEEE-----EESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             HHhcCCCEEEEeehhhhCCHHHHhhCcCCEEE-----EcCCcCcCCCCcCHHHHHHHcCCCcEEEEEEEECC
Confidence            77  899999999999999   9999999999     99999999999999999999999999999999986

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.95  E-value=1.4e-28  Score=245.74  Aligned_cols=125  Identities=18%  Similarity=0.127  Sum_probs=110.3

Q ss_pred             eeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----hhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345          129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (269)
Q Consensus       129 ~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~-----~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~  201 (269)
                      |||+||+|++  ++||++|+++      +++|++|+||+|+ +.     ++++++|+++|||+++.+..   .++++++.
T Consensus         1 ~ri~~~~s~~~~~~~l~~l~~~------~~~i~~v~t~~~~-~~~~~~~~~~~~~a~~~~ip~~~~~~~---~~~~~~~~   70 (660)
T 1z7e_A            1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDN-PGEKAFYGSVARLAAERGIPVYAPDNV---NHPLWVER   70 (660)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC---------CCHHHHHHHHTCCEECCSCT---TSHHHHHH
T ss_pred             CEEEEEEeCHHHHHHHHHHHhC------CCCEEEEEeCCCC-CccCcCccHHHHHHHHcCCCEeccCCC---CcHHHHHH
Confidence            6999999999  6999999985      3799999999865 22     57999999999999986532   23456777


Q ss_pred             hc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          202 VQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       202 l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++  ++|++|+++||+||+   ++.|+.|+||     +||||||+|||++|++||+++|+++||+|+|+||+
T Consensus        71 l~~~~~d~iv~~~~~~il~~~~l~~~~~~~iN-----iH~slLP~~rG~~p~~~ai~~g~~~~G~t~~~~~~  137 (660)
T 1z7e_A           71 IAQLSPDVIFSFYYRHLIYDEILQLAPAGAFN-----LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK  137 (660)
T ss_dssp             HHHHCCSEEEEESCCSCCCHHHHTTCTTCEEE-----EESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             HHhcCCCEEEEcCcccccCHHHHhcCCCCeEE-----ecCCcCCCCCCccHHHHHHHcCCCcEEEEEEEECC
Confidence            76  999999999999999   9999999999     99999999999999999999999999999999986

>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1

Probab=99.76  E-value=9.6e-20  Score=165.17  Aligned_cols=64  Identities=8%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             HHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          198 LLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       198 l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +.+.++  ++|++|+++||+||+   ++.|  |+||     +||||||+|||++|++||+.+|+++||||+|+||+
T Consensus        69 ~~~~L~~~~pDliv~~~y~~ilp~~il~~~--g~iN-----iHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~  137 (260)
T 1zgh_A           69 TFEKVKLINPEYILFPHWSWIIPKEIFENF--TCVV-----FHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDG  137 (260)
T ss_dssp             CHHHHHHHCCSEEEESSCCSCCCHHHHTTS--CEEE-----EESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCS
T ss_pred             HHHHHHhcCCCEEEEeccccccCHHHHccC--CEEE-----EeCCcCCCCCCcCHHHHHHHcCCCcEEEEEEEEcc
Confidence            344555  899999999999999   7764  7999     99999999999999999999999999999999986

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.66  E-value=9.7e-16  Score=144.84  Aligned_cols=159  Identities=11%  Similarity=0.057  Sum_probs=110.9

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      ..+++|||+|+||||||++||++|+++||||+|++|+..  +|.|+|++.+++|+...+.++|+++|..++++++ |+|.
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~   86 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVG-LDVS   86 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTT-CEEE
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcC-eEEE
Confidence            468999999999999999999999999999999999865  7999999999998522256899999999999998 5665


Q ss_pred             eeecCCC-----CCeeEE-EEEeC-CchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCC
Q 024345          120 VRVPDID-----PKYKVA-VLASK-QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN  192 (269)
Q Consensus       120 ~~~~~~~-----~~~ria-v~~Sg-~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~  192 (269)
                      ++.....     ....+. +++-. .+..+.++...+.+..++++-..-+++.+            ..+++++.--.+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~------------~~~~~~~v~~~~~~  154 (415)
T 3p96_A           87 IERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYP------------VIGLELRVSVPPGA  154 (415)
T ss_dssp             EEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSS------------SEEEEEEEECCTTC
T ss_pred             EEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCC------------ceEEEEEeeCCCCC
Confidence            5443221     122234 44443 36888888777766665555444555431            22455443112222


Q ss_pred             c--hHHHHHHHhc--cCCEEEEEec
Q 024345          193 E--REEELLELVQ--NTDFLVLARY  213 (269)
Q Consensus       193 ~--~e~~l~~~l~--~~Dlivla~y  213 (269)
                      .  -++++.++.+  ++|++|+..-
T Consensus       155 ~~~l~~~l~~l~~~~~vD~~v~~~~  179 (415)
T 3p96_A          155 DEALRTALNRVSSEEHVDVAVEDYT  179 (415)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             HHHHHHHHHHHhhhcCcCccccccc
Confidence            2  1345566655  7999988763

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=99.51  E-value=1.5e-13  Score=103.60  Aligned_cols=77  Identities=23%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~  120 (269)
                      +++.|+|.|+||||++++||++|+++|+||.++++...  .|.|.|++++++|+ ..+.++|.++|.+++++++ ++|..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~--~~~~~~~i~v~~~~-~~~l~~l~~~L~~~~~~~~-~~~~~   79 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLN-VKINI   79 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHT-EEEEE
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE--cCEEEEEEEEEeCC-CCCHHHHHHHHHHHHHHcC-CEEEE
Confidence            67999999999999999999999999999999999755  38999999999986 6789999999999999998 56644


Q ss_pred             e
Q 024345          121 R  121 (269)
Q Consensus       121 ~  121 (269)
                      .
T Consensus        80 ~   80 (91)
T 1zpv_A           80 Q   80 (91)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.48  E-value=5.4e-14  Score=121.48  Aligned_cols=81  Identities=19%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~----~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~e  112 (269)
                      .....+++|+|.|+||||||++||++|+++|+||.+++++...    ..+.|+|++++..|+ +.+ ++|+++|.+++++
T Consensus        88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~~l~~~a~~  165 (195)
T 2nyi_A           88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVTALSRVEEE  165 (195)
T ss_dssp             CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999998643    457999999999985 566 9999999999999


Q ss_pred             hccceeee
Q 024345          113 FNAMRSVV  120 (269)
Q Consensus       113 l~l~~~~~  120 (269)
                      ++ |+|..
T Consensus       166 l~-~di~~  172 (195)
T 2nyi_A          166 FG-VDIDL  172 (195)
T ss_dssp             HT-CEEEE
T ss_pred             cC-eEEEE
Confidence            98 57644

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.40  E-value=4.6e-12  Score=108.40  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=66.0

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~  120 (269)
                      .+++|+|.|+||||||++||++|+++|+||.+++++..  .|.|+|++.+..|.  .+.++|+++|.+++++++ +.|..
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~~~~-~~~~~   79 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSP--SNITRVETTLPLLGQQHD-LITMM   79 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECH--HHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCC--CCHHHHHHHHHHHHHhcC-CEEEE
Confidence            36999999999999999999999999999999999864  79999999999874  367899999999999987 45543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.39  E-value=2.4e-12  Score=110.21  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=71.2

Q ss_pred             CCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC------CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE------KKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        37 ~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~------~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      ......++|+|.|+||||||++||++|+++|+||.++++....      ..+.|+|++++..|+ +.+.++|+++|.+++
T Consensus        88 ~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A           88 QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALC  166 (192)
T ss_dssp             CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence            3445789999999999999999999999999999999998543      467999999999986 778999999999999


Q ss_pred             hhhccceeee
Q 024345          111 KMFNAMRSVV  120 (269)
Q Consensus       111 ~el~l~~~~~  120 (269)
                      ++++ |+|..
T Consensus       167 ~~~~-~~~~~  175 (192)
T 1u8s_A          167 TALD-VQGSL  175 (192)
T ss_dssp             HHHT-CEEEE
T ss_pred             HHhC-ceEEE
Confidence            9999 57644

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.36  E-value=2.9e-12  Score=110.60  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=66.6

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC----HHHHHHHHHhhhhhhcc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP----REQMDEDFFKLSKMFNA  115 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~----~~~L~e~L~~la~el~l  115 (269)
                      .++++|+|+|+||||||++||++|+++|+||.+.+++..  .|.|+|++.+..++ . +    .++|+++|.+++++++ 
T Consensus         3 ~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~--~~~f~m~~~v~~~~-~-~~~~~~~~l~~~L~~~~~~~~-   77 (195)
T 2nyi_A            3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACL--GGDFAMIVLVSLNA-K-DGKLIQSALESALPGFQISTR-   77 (195)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-S-SSHHHHHHHHHHSTTCEEEEE-
T ss_pred             ceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEE--CCeEEEEEEEEecC-c-cchhHHHHHHHHHHHHHHhcC-
Confidence            467999999999999999999999999999999999864  78999999999874 2 4    6889999999998888 


Q ss_pred             ceeee
Q 024345          116 MRSVV  120 (269)
Q Consensus       116 ~~~~~  120 (269)
                      |.|.+
T Consensus        78 ~~~~~   82 (195)
T 2nyi_A           78 RASSV   82 (195)
T ss_dssp             ECCCC
T ss_pred             CeEEE
Confidence            66543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.50  E-value=2e-07  Score=68.82  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=51.2

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      ..++.|++.++||||++++|+++|+++|+||.++++...  .+.+.+.+.+..++    .+.+.+.++++.+
T Consensus         3 ~~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~--~~~~~~~i~v~~~~----~~~l~~l~~~L~~   68 (88)
T 2ko1_A            3 DFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK--DGIFTCNLMIFVKN----TDKLTTLMDKLRK   68 (88)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC--SSEEEEEEEEEESS----HHHHHHHHHHHTT
T ss_pred             cEEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc--CCEEEEEEEEEECC----HHHHHHHHHHHhc
Confidence            367889999999999999999999999999999998643  33666777777763    4555555555543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.27  E-value=9.2e-06  Score=76.32  Aligned_cols=106  Identities=11%  Similarity=-0.002  Sum_probs=80.6

Q ss_pred             ccccceecCCC-CCCCcceEEEEEEcCC-CcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHH
Q 024345           25 LKFPGEPIESS-VSPTLTHGIHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQM  102 (269)
Q Consensus        25 ~~~~~~~~~~~-~~~~~~~~iItV~G~D-rpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L  102 (269)
                      +++++.+.+.. ..+...++.++++|.| ++|++++|+.+++++|+||.++.....  ...|.+.+.+.+|+  .+.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~--~~~~~~~~~v~~~~--~~~~~l  158 (415)
T 3p96_A           83 LDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD--YPVIGLELRVSVPP--GADEAL  158 (415)
T ss_dssp             CEEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES--SSSEEEEEEEECCT--TCHHHH
T ss_pred             eEEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC--CCceEEEEEeeCCC--CCHHHH
Confidence            44666665443 2355679999999999 999999999999999999999988542  45666667777774  578999


Q ss_pred             HHHHHhhhhhhccceeeeeecC-CCCCeeEEEEE
Q 024345          103 DEDFFKLSKMFNAMRSVVRVPD-IDPKYKVAVLA  135 (269)
Q Consensus       103 ~e~L~~la~el~l~~~~~~~~~-~~~~~riav~~  135 (269)
                      +++|.++++++++ +..+.... ..+++|.++|=
T Consensus       159 ~~~l~~l~~~~~v-D~~v~~~~~~~~~~k~viFD  191 (415)
T 3p96_A          159 RTALNRVSSEEHV-DVAVEDYTLERRAKRLIVFD  191 (415)
T ss_dssp             HHHHHHHHHHHTC-EEEEEECSTTTTCCCEEEEC
T ss_pred             HHHHHHHhhhcCc-CcccccccccccCCcEEEEc
Confidence            9999999999986 55443332 45667877773

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.95  E-value=1.5e-05  Score=67.36  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      |+.+.|+|...||||++++|++.|+++|+||.+++.......|...|.+.++-+  ....+++.+.|.++-+=+
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~Kl~dV~   72 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLVDVL   72 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHSTTEE
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHcCCCCEE
Confidence            457899999999999999999999999999999998644334666677777622  223566666666654433

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.67  E-value=7.3e-05  Score=63.19  Aligned_cols=72  Identities=18%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      +++.|+|...|+||..++|++.|+++|+||..++.......|...|.+.++-+  ....+++.+.|.++-+=+.
T Consensus         3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL~Kl~dV~~   74 (165)
T 2pc6_A            3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQLNKLIEVVK   74 (165)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHHHHSTTEEE
T ss_pred             eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHhcCCCCEEE
Confidence            47899999999999999999999999999999988644335666676677633  2345667777776644443

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=97.62  E-value=0.00019  Score=62.13  Aligned_cols=73  Identities=19%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      .+++.|+|.-.|+||.+++|++.|+++|+||..++.......|.-.|.+.++-+  +...++|.+.|.++-+-+.
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~KLidVik   99 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYKLVEVVK   99 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTTSTTEEE
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcCcCceEE
Confidence            358999999999999999999999999999999988644445666666777654  3357888888887654443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=97.47  E-value=0.0036  Score=50.24  Aligned_cols=63  Identities=10%  Similarity=0.069  Sum_probs=47.1

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      .|+...++|..+|+||++++|++.|+++|+||..+.+......|.  +++.+  .    +.+..++.|++.
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~--~~~~~--~----d~~~a~~~L~~~   65 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIV--S----DPDKAYKALKDN   65 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEE--S----CHHHHHHHHHHT
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE--EEEEe--C----CHHHHHHHHHHc
Confidence            467899999999999999999999999999999998853221122  33432  2    467777777754

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.44  E-value=0.00019  Score=63.28  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC--C-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--K-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~--~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      .+++.|.+.+.||||++++|++.|+++++||..+++....  . .+...+.  +++.+ . +.+++-+.|.++-.=... 
T Consensus         2 ~~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-~-~Le~LL~kLrkI~gV~~V-   76 (223)
T 1y7p_A            2 HMLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-G-DFEKILERVKTFDYIIEI-   76 (223)
T ss_dssp             --CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-S-CHHHHHHHHHTCTTEEEE-
T ss_pred             CceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-C-CHHHHHHHHhCCCCeeEE-
Confidence            4678999999999999999999999999999999997542  1 3566666  55554 3 677777777766443332 


Q ss_pred             eeeeeecC--CCCCeeEEEEEeCC
Q 024345          117 RSVVRVPD--IDPKYKVAVLASKQ  138 (269)
Q Consensus       117 ~~~~~~~~--~~~~~riav~~Sg~  138 (269)
                         .+...  .-.-+||.+++.|-
T Consensus        77 ---~Rv~~~~~i~gkrvii~ggga   97 (223)
T 1y7p_A           77 ---EEEESFERVFGKRVIILGGGA   97 (223)
T ss_dssp             ---EEECCHHHHTCEEEEEEECHH
T ss_pred             ---EEEcchhhhcCcEEEEECCcH
Confidence               12221  11237999998774

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.41  E-value=0.00083  Score=55.86  Aligned_cols=88  Identities=13%  Similarity=-0.028  Sum_probs=62.9

Q ss_pred             ceEEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        41 ~~~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      ....|+|.| +|+||+.++|.+.|+++|+||.-++|...+ .|.+.+.+.++-+    +.+...+.|+++.++++.....
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~----~~~~a~~~l~~~~~~l~~~~i~   98 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRG----DYKQTLEILSERQDSIGAASID   98 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGG----GHHHHHHHHHHSSTTTTCSEEE
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEech----HHHHHHHHHHHHHHHcCCceEE
Confidence            345778887 899999999999999999999999885332 3666666666532    4667788899888888752211


Q ss_pred             eeecCCCCCeeEEEEEeC
Q 024345          120 VRVPDIDPKYKVAVLASK  137 (269)
Q Consensus       120 ~~~~~~~~~~riav~~Sg  137 (269)
                          ....-.+|.+.|.+
T Consensus        99 ----~~~~~a~vsvvG~~  112 (167)
T 2re1_A           99 ----GDDTVCKVSAVGLG  112 (167)
T ss_dssp             ----EESSEEEEEEECSS
T ss_pred             ----ecCCEEEEEEECCC
Confidence                12345678888877

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.28  E-value=0.0035  Score=51.94  Aligned_cols=103  Identities=16%  Similarity=0.063  Sum_probs=70.8

Q ss_pred             ceEEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345           41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (269)
Q Consensus        41 ~~~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~  118 (269)
                      ....|++.| +|+||+.+++.+.|+++|+||.-++|...+ ..|...+.+.++-.    +.+...+.|+++.++++. . 
T Consensus        15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~----d~~~a~~~L~~~~~~~~~-~-   88 (167)
T 2dt9_A           15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD----FAQEALEALEPVLAEIGG-E-   88 (167)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG----GHHHHHHHHHHHHHHHCC-E-
T ss_pred             CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH----HHHHHHHHHHHHHHHhCC-c-
Confidence            456778888 899999999999999999999999884321 23456666666532    466777888888888874 3 


Q ss_pred             eeeecCCCCCeeEEEEEeC---CchHHHHHHHhhhcC
Q 024345          119 VVRVPDIDPKYKVAVLASK---QEHCLVDFLYGWQEG  152 (269)
Q Consensus       119 ~~~~~~~~~~~riav~~Sg---~g~~l~~ll~~~~~g  152 (269)
                       .+.  ....-+|.+.|.|   ....+..+++...+.
T Consensus        89 -v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~  122 (167)
T 2dt9_A           89 -AIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVAST  122 (167)
T ss_dssp             -EEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHT
T ss_pred             -EEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHC
Confidence             222  3456789999987   323334444444333

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.97  E-value=0.0012  Score=53.59  Aligned_cols=64  Identities=11%  Similarity=0.098  Sum_probs=43.3

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      .|.|.|.||+|++++|+++|+++++||..++....   |.  +.+.+.... ......|.+.+..+...+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~-~~~~~~L~~~l~~i~~~~   65 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELE-FESFSSLMAEIRRIAGVT   65 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCC-HHHHHHHHHHHHHSTTEE
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCC-HHHHHHHHHHHHcCCCee
Confidence            47899999999999999999999999999999532   54  333333221 112344555555554444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.47  E-value=0.0079  Score=58.82  Aligned_cols=66  Identities=17%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      +..+.+.+.-+|+||+|++|++.|.++|+||.+++..-...+|.-.|.++++-+   .+ +++-+.+.++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~---~~-~~~l~~l~~~  517 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD---VP-DDVRTAIAAA  517 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC---CC-HHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC---CC-HHHHHHHhcC
Confidence            345678888999999999999999999999999987533345666677777744   23 4455555554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.42  E-value=0.0098  Score=56.45  Aligned_cols=65  Identities=15%  Similarity=0.126  Sum_probs=46.9

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      ....|.+.-.|+||+|++|++.|+++|+||..+...-  .++.-.|.++++-+. . ..+++.+.|.++
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~-~-~~~~~l~~l~~i  394 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADE-D-VAEKALQAMKAI  394 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCH-H-HHHHHHHHHHTS
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCC-C-CCHHHHHHHhcC
Confidence            3556889999999999999999999999999988754  345556677777431 0 134455555543

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.17  E-value=0.016  Score=50.03  Aligned_cols=90  Identities=17%  Similarity=0.011  Sum_probs=64.0

Q ss_pred             eEEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345           42 HGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (269)
Q Consensus        42 ~~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~  120 (269)
                      ...||+.| +|+||+.++|-+.|+++|+||.=+.|.....+ .....+.+.+|.  .+.+...+.|+++..+++..... 
T Consensus        35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~-~~~~~~sftv~~--~d~~~~~~~l~~~~~~~~~~~v~-  110 (200)
T 4go7_X           35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVE-DGKTDITFTCSR--DVGPAAVEKLDSLRNEIGFSQLL-  110 (200)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC---CCEEEEEEEEEG--GGHHHHHHHHHTTHHHHCCSEEE-
T ss_pred             EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeecccccc-ccceEEEEecch--hhHHHHHHHHHHHHhhhceeeEE-
Confidence            45677766 79999999999999999999999988533212 223355555553  35777888899998888753322 


Q ss_pred             eecCCCCCeeEEEEEeCC
Q 024345          121 RVPDIDPKYKVAVLASKQ  138 (269)
Q Consensus       121 ~~~~~~~~~riav~~Sg~  138 (269)
                         ....--||.+.|.|=
T Consensus       111 ---~~~~iakVSvVG~GM  125 (200)
T 4go7_X          111 ---YDDHIGKVSLIGAGM  125 (200)
T ss_dssp             ---EECCEEEEEEEEESC
T ss_pred             ---EecCeeeeeeecccc
Confidence               233556899999886

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.14  E-value=0.017  Score=46.26  Aligned_cols=57  Identities=19%  Similarity=0.176  Sum_probs=39.1

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      ++.+..+|+||.++++++.|+++|+||..+-++.  ..+.-.  +.++..    +.+...+.|.+
T Consensus        74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~--~~i~~~----d~~~A~~~L~~  130 (144)
T 2f06_A           74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVAN--VVIRPS----NMDKCIEVLKE  130 (144)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEE--EEEEES----CHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEE--EEEEeC----CHHHHHHHHHH
Confidence            4555668999999999999999999998877652  123323  333332    45666666655

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.85  E-value=0.21  Score=41.99  Aligned_cols=88  Identities=16%  Similarity=-0.009  Sum_probs=61.0

Q ss_pred             EEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (269)
Q Consensus        43 ~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~  120 (269)
                      ..|++.| +|+||+.++|.+.|+++|+||.-++|.... ..|.-.+.+.++  .  .+.+...+.|+++.++++.....+
T Consensus        17 ~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~--~--~~~~~a~~~L~~~~~el~~~~v~~   92 (181)
T 3s1t_A           17 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS--R--DVGPAAVEKLDSLRNEIGFSQLLY   92 (181)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE--T--TTHHHHHHHHHHTHHHHCCSEEEE
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe--h--hHHHHHHHHHHHHHHhcCcceEEE
Confidence            3455443 699999999999999999999999875332 145444455554  3  256778888988888886433222


Q ss_pred             eecCCCCCeeEEEEEeCC
Q 024345          121 RVPDIDPKYKVAVLASKQ  138 (269)
Q Consensus       121 ~~~~~~~~~riav~~Sg~  138 (269)
                          ...--+|.+.|.|=
T Consensus        93 ----~~~va~VsvVG~gm  106 (181)
T 3s1t_A           93 ----DDHIGKVSLIGAGM  106 (181)
T ss_dssp             ----ESCEEEEEEEEECC
T ss_pred             ----eCCEEEEEEEeccc
Confidence                23557899999864

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=95.70  E-value=0.15  Score=42.45  Aligned_cols=106  Identities=15%  Similarity=0.000  Sum_probs=66.5

Q ss_pred             eEEEEEE-cCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           42 HGIHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        42 ~~iItV~-G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      ...|+|. .+|+||+.++|.+.|+++|+||.-+.+... +..|.-.+.+.+..+    +.+...+.|+++.++++.....
T Consensus        15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~----d~~~a~~~l~~~~~~~~~~~v~   90 (178)
T 2dtj_A           15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS----DGRRAMEILKKLQVQGNWTNVL   90 (178)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH----HHHHHHHHHHTTTTTTTCSEEE
T ss_pred             EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc----cHHHHHHHHHHHHHhcCCCeEE
Confidence            3456663 489999999999999999999999987532 122322222333322    3566778888887777743221


Q ss_pred             eeecCCCCCeeEEEEEeCCc---hHHHHHHHhhhcCCCC
Q 024345          120 VRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLP  155 (269)
Q Consensus       120 ~~~~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g~l~  155 (269)
                          ..+..-+|.+.|+|=.   ..+..++....+..++
T Consensus        91 ----~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~In  125 (178)
T 2dtj_A           91 ----YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVN  125 (178)
T ss_dssp             ----EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             ----EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCC
Confidence                2346678999998642   2344455554444333

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.13  E-value=0.015  Score=54.49  Aligned_cols=71  Identities=15%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345          124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (269)
Q Consensus       124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~  203 (269)
                      ...+|.||+|.|+|-|..-   +.++++-.-.+++++|++..    .....++|+++|||++. +     .+    ++++
T Consensus         3 ~~~~~~rv~VvG~G~g~~h---~~a~~~~~~~~elvav~~~~----~~~a~~~a~~~gv~~~~-~-----~~----~l~~   65 (372)
T 4gmf_A            3 SASPKQRVLIVGAKFGEMY---LNAFMQPPEGLELVGLLAQG----SARSRELAHAFGIPLYT-S-----PE----QITG   65 (372)
T ss_dssp             ----CEEEEEECSTTTHHH---HHTTSSCCTTEEEEEEECCS----SHHHHHHHHHTTCCEES-S-----GG----GCCS
T ss_pred             CCCCCCEEEEEehHHHHHH---HHHHHhCCCCeEEEEEECCC----HHHHHHHHHHhCCCEEC-C-----HH----HHhc
Confidence            4568899999999866432   23332221137888877654    35688999999999753 2     12    2334


Q ss_pred             cCCEEEEE
Q 024345          204 NTDFLVLA  211 (269)
Q Consensus       204 ~~Dlivla  211 (269)
                      ++|+++++
T Consensus        66 ~~D~v~i~   73 (372)
T 4gmf_A           66 MPDIACIV   73 (372)
T ss_dssp             CCSEEEEC
T ss_pred             CCCEEEEE
Confidence            67777665

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=94.85  E-value=0.097  Score=43.14  Aligned_cols=62  Identities=23%  Similarity=0.089  Sum_probs=46.0

Q ss_pred             ceEEEEEEcCC---CcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           41 THGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        41 ~~~iItV~G~D---rpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      .-..++|+|.+   +||+.+++.+.|+++|+||.-+++.      .-.+.+.++       .++..++++.+.++|.+
T Consensus       102 ~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ists------e~~is~vv~-------~~d~~~av~~Lh~~f~l  166 (167)
T 2re1_A          102 TVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTS------EIKVSVLID-------EKYMELATRVLHKAFNL  166 (167)
T ss_dssp             SEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEEC------SSEEEEEEE-------GGGHHHHHHHHHHHTTC
T ss_pred             CEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcc------cCEEEEEEe-------HHHHHHHHHHHHHHhcC
Confidence            35789999998   9999999999999999999998641      112333333       24466788888777764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=94.18  E-value=0.12  Score=49.37  Aligned_cols=65  Identities=12%  Similarity=0.111  Sum_probs=45.9

Q ss_pred             hhhhhheeccccccccccceecCCCCCCCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           11 LQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      .+++..|.+..--.-.+|+-+.  +.+.......|+++=.+.||++++|+++|+++|+||.++....
T Consensus       314 ~~nl~~~l~~g~~~~~Vn~p~~--~~~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~  378 (416)
T 3k5p_A          314 TRKLVEYSDVGSTVGAVNFPQV--QLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT  378 (416)
T ss_dssp             HHHHHHHHHHCCCTTBSSSCCC--CCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             HHHHHHHHhhCCCCceeeCCCc--CCCCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC
Confidence            4455555433222234555444  2334445689999999999999999999999999999987653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.84  E-value=0.13  Score=49.44  Aligned_cols=70  Identities=13%  Similarity=0.059  Sum_probs=49.5

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      ....+|.+.+...|+||++++|++.|+++|++|..+-|.... ..+.  ..+.+-- . .....+++++++++.+
T Consensus       355 ~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~--~~~v~~t-h-~~~e~~~~~~~~~~~~  425 (444)
T 3mtj_A          355 AVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQ--VDIILLT-H-VTLEKNVNAAIAKIEA  425 (444)
T ss_dssp             GCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------C--EEEEEEE-C-SEEHHHHHHHHHHHTT
T ss_pred             HcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCC--ceEEEEe-c-cCCHHHHHHHHHHHhc
Confidence            345789999999999999999999999999999999885321 1112  2222221 1 3457889999888865

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=93.61  E-value=0.21  Score=41.03  Aligned_cols=62  Identities=16%  Similarity=0.102  Sum_probs=45.1

Q ss_pred             ceEEEEEEcCC---CcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           41 THGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        41 ~~~iItV~G~D---rpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      .-..++|+|.+   +||+.+++.+.|++.|+||.-+++     +.. .+.+.++       .++..++++.|-+.|.+
T Consensus        94 ~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~-----Se~-~is~vv~-------~~d~~~Av~~Lh~~f~~  158 (167)
T 2dt9_A           94 DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT-----SEV-RISVIIP-------AEYAEAALRAVHQAFEL  158 (167)
T ss_dssp             SEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE-----CSS-EEEEEEE-------GGGHHHHHHHHHHHTC-
T ss_pred             CEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc-----cCC-EEEEEEe-------HHHHHHHHHHHHHHHcC
Confidence            34568999987   999999999999999999976653     222 4444443       24567777777777764

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=93.56  E-value=0.12  Score=43.15  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      .-..|+|+|.   |+||+.+++.+.|++.|+||.-+++.   .   -.+.+.+  +     .++..++++.|.+.|.+
T Consensus        94 ~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS---e---~~Is~vV--~-----~~d~~~Av~~Lh~~F~l  158 (178)
T 2dtj_A           94 QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS---E---IRISVLI--R-----EDDLDAAARALHEQFQL  158 (178)
T ss_dssp             CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE---T---TEEEEEE--E-----GGGHHHHHHHHHHHHTC
T ss_pred             CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC---C---CeEEEEE--e-----HHHHHHHHHHHHHHHcc
Confidence            4567899998   89999999999999999999988642   1   1222333  2     36678888888888875

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=92.97  E-value=1.7  Score=40.90  Aligned_cols=86  Identities=19%  Similarity=-0.054  Sum_probs=60.0

Q ss_pred             EEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCC--CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceee
Q 024345           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (269)
Q Consensus        43 ~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~--~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~  119 (269)
                      ..|+|.| +|+||+.++|.+.|+++|+||.-++|.. ..  .|...+.+.++  .  .+.+...+.|+++.++++...  
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~-s~~~~g~~~isf~v~--~--~~~~~a~~~l~~~~~~~~~~~--  337 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV-FSVEDGTTDITFTCP--R--SDGRRAMEILKKLQVQGNWTN--  337 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECC-CC--CCEEEEEEEEE--T--TTHHHHHHHHHHHHTTTTCSE--
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccC-ccccCCcceEEEEEe--c--hhHHHHHHHHHHHHHHcCCce--
Confidence            4567774 8999999999999999999999997721 11  34445555554  2  256777788888888887422  


Q ss_pred             eeecCCCCCeeEEEEEeC
Q 024345          120 VRVPDIDPKYKVAVLASK  137 (269)
Q Consensus       120 ~~~~~~~~~~riav~~Sg  137 (269)
                      ...  ....-+|.+.|.|
T Consensus       338 v~~--~~~~a~vsvVG~g  353 (421)
T 3ab4_A          338 VLY--DDQVGKVSLVGAG  353 (421)
T ss_dssp             EEE--ECCEEEEEEECGG
T ss_pred             EEE--eCCeEEEEEEccC
Confidence            112  2355688888875

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=92.40  E-value=0.89  Score=41.73  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             CcceEEEEEEcC-CCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           39 TLTHGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        39 ~~~~~iItV~G~-DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ...+..|.+.-+ |+||-.+++=+.|+.+|+|+..+.+.... ..+.|..-++++  + ..+-+.++++|++|....
T Consensus       198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g-~~~d~~v~~aL~~L~~~~  271 (313)
T 3mwb_A          198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD--G-HATDSRVADALAGLHRIS  271 (313)
T ss_dssp             SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE--S-CTTSHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe--C-CCCcHHHHHHHHHHHHhc
Confidence            344556666665 99999999999999999999999997432 234444345554  2 334467888888775543

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=91.61  E-value=0.26  Score=42.43  Aligned_cols=63  Identities=17%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccc
Q 024345           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (269)
Q Consensus        41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~  116 (269)
                      .-..++++|.   .+||+-+++-+.|++.|+||.-+++.      .-.+.+.+  +     .++..+++..|-+.|+|.
T Consensus       114 ~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstS------Ei~IS~vV--~-----~~d~~~Av~aLH~~F~L~  179 (200)
T 4go7_X          114 HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS------EIRISVLC--R-----DTELDKAVVALHEAFGLG  179 (200)
T ss_dssp             CEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEEC------SSEEEEEE--E-----GGGHHHHHHHHHHHHTC-
T ss_pred             CeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEcc------CCEEEEEE--e-----HHHHHHHHHHHHHHhCCC
Confidence            3467889987   78999999999999999999999752      12333333  3     366889999999999973

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=91.52  E-value=0.93  Score=40.97  Aligned_cols=69  Identities=17%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      +..|.+.-+|+||-.+++=+.|+.+|+|+..+.+.... ..+.|..-++++  + ..+-+.++++|++|....
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--g-~~~d~~v~~aL~~L~~~~  269 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--G-HREDQNVHNALENLREFA  269 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--S-CTTSHHHHHHHHHHHTTC
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--c-CCCcHHHHHHHHHHHHhc
Confidence            33444444799999999999999999999999997432 234444445554  2 234467888888875543

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A

Probab=90.53  E-value=0.78  Score=40.44  Aligned_cols=79  Identities=14%  Similarity=0.123  Sum_probs=49.2

Q ss_pred             CeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCC---------CChhHHHHHHhCCCCeEEeCCCCC--chH
Q 024345          128 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRG---------PNSHVIRFLERHGIPYHYLCAKEN--ERE  195 (269)
Q Consensus       128 ~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~---------~~~~v~~~a~~~gIP~~~~~~~~~--~~e  195 (269)
                      .||++++.||.- |++ ++....++|   ++|.++.+..+..         +-..+...|+..|||++.++....  ...
T Consensus         4 ~MKvvvl~SGGkDSs~-al~~l~~~G---~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~   79 (237)
T 3rjz_A            4 LADVAVLYSGGKDSNY-ALYWAIKNR---FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEV   79 (237)
T ss_dssp             CSEEEEECCSSHHHHH-HHHHHHHTT---CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CH
T ss_pred             CCEEEEEecCcHHHHH-HHHHHHHcC---CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHH
Confidence            379999999975 554 444444566   6887775443210         113477889999999999873321  123


Q ss_pred             HHHHHHhc--cCCEEEE
Q 024345          196 EELLELVQ--NTDFLVL  210 (269)
Q Consensus       196 ~~l~~~l~--~~Dlivl  210 (269)
                      +++.++++  +++.+|.
T Consensus        80 e~l~~~l~~~~i~~vv~   96 (237)
T 3rjz_A           80 EDLKRVLSGLKIQGIVA   96 (237)
T ss_dssp             HHHHHHHTTSCCSEEEC
T ss_pred             HHHHHHHHhcCCcEEEE
Confidence            56677777  5666653

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=90.26  E-value=6.1  Score=39.09  Aligned_cols=128  Identities=14%  Similarity=0.120  Sum_probs=76.3

Q ss_pred             EEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh-------cc
Q 024345           44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF-------NA  115 (269)
Q Consensus        44 iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el-------~l  115 (269)
                      .|++.+ +|+||+.++|-+.|+++|+|+.-+.|.. +.+|.-.  +.+.++.  .+.+...+.|+++..++       +.
T Consensus       272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~-~~~~~~~--Isftv~~--~~~~~a~~~l~~~~~el~~~~~~~~~  346 (600)
T 3l76_A          272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSI-HDGNSND--IAFTVVK--DLLNTAEAVTSAIAPALRSYPEADQE  346 (600)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCC-CBTTEEE--EEEEECG--GGHHHHHHHHHHHGGGGSSSTTCSSS
T ss_pred             EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeec-cCCCCce--EEEEEeH--HHHHHHHHHHHHHHHHhhccccccCc
Confidence            455555 6999999999999999999998887743 1245444  4444443  25677788888888887       32


Q ss_pred             ceeeeeecCCCCCeeEEEEEeCCc---hHHHHHHHhhhcCCC--------CceEEEEeeCCCCCCChhHHHHHHhCCC
Q 024345          116 MRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKL--------PVEITCVISNHDRGPNSHVIRFLERHGI  182 (269)
Q Consensus       116 ~~~~~~~~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g~l--------~~~i~~Visn~~~~~~~~v~~~a~~~gI  182 (269)
                      ....    ....--+|.+.|.|-.   ..+..++....+..+        ...|+++|...+  .+..+..+-+++..
T Consensus       347 ~~v~----~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d--~~~Av~aLh~~f~~  418 (600)
T 3l76_A          347 AEII----VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRD--ADRAIAALSNAFGV  418 (600)
T ss_dssp             SEEE----EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGG--HHHHHHHHHHHTTC
T ss_pred             ceeE----ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHH--HHHHHHHHHHhhcc
Confidence            2211    1235568888887531   233334443333222        245777776553  12234444555544

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=90.17  E-value=0.59  Score=42.07  Aligned_cols=71  Identities=10%  Similarity=0.195  Sum_probs=44.1

Q ss_pred             CCCCeeEEEEEeCCc-h-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345          125 IDPKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (269)
Q Consensus       125 ~~~~~riav~~Sg~g-~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l  202 (269)
                      ...|+||+|+|.|.- . .....+..  .+  .+++++|+...    ...+.++|+++|+|-.+-+         +-+++
T Consensus        20 ~~~mirigiIG~G~ig~~~~~~~~~~--~~--~~~lvav~d~~----~~~a~~~a~~~g~~~~y~d---------~~ell   82 (350)
T 4had_A           20 FQSMLRFGIISTAKIGRDNVVPAIQD--AE--NCVVTAIASRD----LTRAREMADRFSVPHAFGS---------YEEML   82 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHH--CS--SEEEEEEECSS----HHHHHHHHHHHTCSEEESS---------HHHHH
T ss_pred             ccCccEEEEEcChHHHHHHHHHHHHh--CC--CeEEEEEECCC----HHHHHHHHHHcCCCeeeCC---------HHHHh
Confidence            457799999999973 2 22222332  22  36887766533    3467899999999965522         22345


Q ss_pred             c--cCCEEEEEe
Q 024345          203 Q--NTDFLVLAR  212 (269)
Q Consensus       203 ~--~~Dlivla~  212 (269)
                      +  ++|.|+.+-
T Consensus        83 ~~~~iDaV~I~t   94 (350)
T 4had_A           83 ASDVIDAVYIPL   94 (350)
T ss_dssp             HCSSCSEEEECS
T ss_pred             cCCCCCEEEEeC
Confidence            4  688888764

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=90.14  E-value=0.57  Score=46.51  Aligned_cols=92  Identities=16%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             ceEEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCC--CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccce
Q 024345           41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (269)
Q Consensus        41 ~~~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~--~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~  117 (269)
                      ....|++.+ +|+||+.++|-+.|+++|+|+.=+.|.....  +|.+...+.+.+|.  .+.+...+.|+++.++++..+
T Consensus       443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--~d~~~a~~~l~~~~~~~~~~~  520 (600)
T 3l76_A          443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--GDSSQAEAILQPLIKDWLDAA  520 (600)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--HHHHHHHHHHHHHTTTSTTCE
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--HHHHHHHHHHHHHHHhcCCce
Confidence            344566655 8999999999999999999998887764321  35333344444443  246677788888888877433


Q ss_pred             eeeeecCCCCCeeEEEEEeCC
Q 024345          118 SVVRVPDIDPKYKVAVLASKQ  138 (269)
Q Consensus       118 ~~~~~~~~~~~~riav~~Sg~  138 (269)
                      ..+    ...--||++.|.|=
T Consensus       521 v~~----~~~~akVSiVG~GM  537 (600)
T 3l76_A          521 IVV----NKAIAKVSIVGSGM  537 (600)
T ss_dssp             EEE----ECCEEEEEEECGGG
T ss_pred             EEE----eCCeEEEEEECccc
Confidence            222    23556899887653

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=90.11  E-value=1.3  Score=39.66  Aligned_cols=68  Identities=10%  Similarity=-0.021  Sum_probs=46.2

Q ss_pred             eEEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        42 ~~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      +..|.+.-   +|+||-.+++=+.|+.+|+|+..+.+.... ..+.|..-++++ .   .+-+.++++|++|....
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~---~~d~~v~~aL~~L~~~~  257 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S---AITTDIKKVIAILETLD  257 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C---CSCHHHHHHHHHHHHTT
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c---CCcHHHHHHHHHHHHhc
Confidence            33444444   899999999999999999999999997432 223333334444 2   13367888888875543

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.90  E-value=1.7  Score=40.17  Aligned_cols=68  Identities=10%  Similarity=0.064  Sum_probs=46.7

Q ss_pred             EEEEEEc-CCCcChHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G-~DrpGIVa~VS~~La~~giNI~dl~~~~~~~-~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      .++.++- .|+||-.+++=+.|+.+|+|+..+.+..... .+.|.  +-+++.+ ..+-..++++|+++....
T Consensus       208 s~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~--FfiD~eg-~~~d~~v~~AL~~L~~~~  277 (329)
T 3luy_A          208 SVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYS--FIVTLDA-APWEERFRDALVEIAEHG  277 (329)
T ss_dssp             EEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EEEEESS-CTTSHHHHHHHHHHHHTT
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEE--EEEEEeC-CcCCHHHHHHHHHHHHhC
Confidence            3344444 3899999999999999999999999964321 12333  3355544 445577888888876543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=89.68  E-value=0.58  Score=39.22  Aligned_cols=62  Identities=18%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      .-..++++|.   ++||+.+++.+.|++.|+||.-+++.      .-.+.+.++       .++..+++..|-+.|.+
T Consensus        95 ~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS------ei~Is~vV~-------~~d~~~Av~aLH~~f~l  159 (181)
T 3s1t_A           95 HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS------EIRISVLCR-------DTELDKAVVALHEAFGL  159 (181)
T ss_dssp             CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE------TTEEEEEEE-------GGGHHHHHHHHHHHHTC
T ss_pred             CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC------CCEEEEEEe-------HHHHHHHHHHHHHHHcC
Confidence            4568899998   89999999999999999999998852      113333333       35577888888888876

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=88.13  E-value=0.92  Score=40.85  Aligned_cols=72  Identities=4%  Similarity=-0.001  Sum_probs=42.4

Q ss_pred             CCeeEEEEEeCCc-h-HHHHH---HHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345          127 PKYKVAVLASKQE-H-CLVDF---LYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (269)
Q Consensus       127 ~~~riav~~Sg~g-~-~l~~l---l~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~  201 (269)
                      +|.||||+|.|.- . -+.++   ..... ..-.+++++|+...    ...+.++|+++|+|-.+-+         +-++
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~-~~~~~~lvav~d~~----~~~a~~~a~~~g~~~~y~d---------~~el   89 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFG-DVERPRLVHLAEAN----AGLAEARAGEFGFEKATAD---------WRAL   89 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHC-SSCCCEEEEEECC------TTHHHHHHHHTCSEEESC---------HHHH
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhc-cCCCcEEEEEECCC----HHHHHHHHHHhCCCeecCC---------HHHH
Confidence            4579999999973 2 12221   11111 11136888877644    2347889999999966522         2234


Q ss_pred             hc--cCCEEEEEe
Q 024345          202 VQ--NTDFLVLAR  212 (269)
Q Consensus       202 l~--~~Dlivla~  212 (269)
                      |+  ++|+|+.+-
T Consensus        90 l~~~~iDaV~Iat  102 (393)
T 4fb5_A           90 IADPEVDVVSVTT  102 (393)
T ss_dssp             HHCTTCCEEEECS
T ss_pred             hcCCCCcEEEECC
Confidence            44  688888764

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=87.22  E-value=1  Score=40.67  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=42.8

Q ss_pred             CCCCeeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345          125 IDPKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (269)
Q Consensus       125 ~~~~~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l  202 (269)
                      ..+++||+|+|.|. |. -+..+... . +  .+++++|....    ...+.++++++|++++.      +.+    +++
T Consensus        10 ~~~~~rvgiiG~G~~g~~~~~~l~~~-~-~--~~~lvav~d~~----~~~~~~~~~~~~~~~~~------~~~----~ll   71 (354)
T 3q2i_A           10 TDRKIRFALVGCGRIANNHFGALEKH-A-D--RAELIDVCDID----PAALKAAVERTGARGHA------SLT----DML   71 (354)
T ss_dssp             CSSCEEEEEECCSTTHHHHHHHHHHT-T-T--TEEEEEEECSS----HHHHHHHHHHHCCEEES------CHH----HHH
T ss_pred             CCCcceEEEEcCcHHHHHHHHHHHhC-C-C--CeEEEEEEcCC----HHHHHHHHHHcCCceeC------CHH----HHh
Confidence            34679999999997 33 33333331 0 2  36777665533    34567888899985432      122    334


Q ss_pred             c--cCCEEEEEec
Q 024345          203 Q--NTDFLVLARY  213 (269)
Q Consensus       203 ~--~~Dlivla~y  213 (269)
                      +  ++|+++++--
T Consensus        72 ~~~~~D~V~i~tp   84 (354)
T 3q2i_A           72 AQTDADIVILTTP   84 (354)
T ss_dssp             HHCCCSEEEECSC
T ss_pred             cCCCCCEEEECCC
Confidence            3  7888887653

>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}

Probab=85.88  E-value=5.1  Score=34.57  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             HHHHHhhhhhhccceeeeeecCCCCCeeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHh
Q 024345          103 DEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER  179 (269)
Q Consensus       103 ~e~L~~la~el~l~~~~~~~~~~~~~~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~  179 (269)
                      ++.|.+++..-|.        ....++||.|..+|+-   .-.+.+++....+.  .++.---+.+...++..+.+.+++
T Consensus        64 ~~rl~~l~~~~~~--------~~~~~~~VLFVCtgN~cRSpmAEal~~~~~~~~--~~v~SAGt~~g~~~dp~a~~vl~e  133 (213)
T 3t38_A           64 KDRLHALAVAEGK--------VASPVPQVLFICVHNAGRSQIASALLSHYAGSS--VEVRSAGSLPASEIHPLVLEILSE  133 (213)
T ss_dssp             HHHHHHHHHHTTC--------SSSCCCEEEEEESSSSSHHHHHHHHHHHHHGGG--CEEEEEESSCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhcCc--------ccCCCCEEEEECCCchhHHHHHHHHHHHhccCc--eEEEecccCCCCCCCHHHHHHHHH
Confidence            4566666655542        2335789999999995   34456666543332  333222222222256789999999


Q ss_pred             CCCCeEEeCCCCCchHHHHHHHhccCCEEEEEecceeeecccccccccccCCCccccCC-CCCCCCCcHHHHH
Q 024345          180 HGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQVNRIRLYVAQLFSCLVTEQLTVL-NSSLGGINISLSS  251 (269)
Q Consensus       180 ~gIP~~~~~~~~~~~e~~l~~~l~~~Dlivla~y~~il~l~~~~~~~iN~~~~~iHpSL-LP~~rG~~p~~~A  251 (269)
                      +||++.....+.  -+++   .++.+|+|+...-...  ...++++.+.      |-.+ =|.|+|...+..+
T Consensus       134 ~Gidis~~~sr~--l~~~---~~~~~DlIitMd~~~~--~P~~~gk~~~------~w~IpDPy~~~~~~F~~v  193 (213)
T 3t38_A          134 RGVNISDAFPKP--LTDD---VIRASDYVITMGCGDV--CPMYPGKHYL------DWELADPSDEGEDKIQEI  193 (213)
T ss_dssp             TTCCCTTCCCCB--CCHH---HHHHCSEEEESSCCSC--SCCCSSSEEE------ESCC-----CCCCCHHHH
T ss_pred             cCCCcccCcCCc--CCHH---HhccCCEEEEecCccc--CccccCCccC------CCCCCCCCCCCHHHHHHH
Confidence            999864222221  1111   1236899999865544  2333433222      3222 2556665555444

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=85.34  E-value=2.1  Score=38.75  Aligned_cols=74  Identities=23%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             CCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh--c
Q 024345          127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--Q  203 (269)
Q Consensus       127 ~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l--~  203 (269)
                      +++||+++|+|. |..+...+... .+  ..++++|+...   ++....++|+++|++...      ..-+++++..  .
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~-~~--~~elvav~d~~---~~~~~~~~a~~~g~~~~~------~~~e~ll~~~~~~   70 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRN-AK--YLEMGAMVGID---AASDGLARAQRMGVTTTY------AGVEGLIKLPEFA   70 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH-CS--SEEEEEEECSC---TTCHHHHHHHHTTCCEES------SHHHHHHHSGGGG
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhh-Cc--CeEEEEEEeCC---hhhhHHHHHHHcCCCccc------CCHHHHHhccCCC
Confidence            468999999887 33333333210 12  36777766644   344467889999998543      1112344431  2


Q ss_pred             cCCEEEEEe
Q 024345          204 NTDFLVLAR  212 (269)
Q Consensus       204 ~~Dlivla~  212 (269)
                      ++|+++.+-
T Consensus        71 ~iDvV~~at   79 (312)
T 1nvm_B           71 DIDFVFDAT   79 (312)
T ss_dssp             GEEEEEECS
T ss_pred             CCcEEEECC
Confidence            678888764

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=85.13  E-value=1.7  Score=38.86  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=41.8

Q ss_pred             CeeEEEEEeCCc-hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--c
Q 024345          128 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (269)
Q Consensus       128 ~~riav~~Sg~g-~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~  204 (269)
                      ++||+|+|.|.- ......+..  .+...+++++|....    ...+.++|+++|+|-.+-+         +.++++  +
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~--~~~~~~~l~av~d~~----~~~a~~~a~~~~~~~~~~~---------~~~ll~~~~   66 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQT--LPRSEHQVVAVAARD----LSRAKEFAQKHDIPKAYGS---------YEELAKDPN   66 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTT--SCTTTEEEEEEECSS----HHHHHHHHHHHTCSCEESS---------HHHHHHCTT
T ss_pred             ccEEEEECchHHHHHHHHHHHh--CCCCCeEEEEEEcCC----HHHHHHHHHHcCCCcccCC---------HHHHhcCCC
Confidence            579999999873 332222221  121135787765533    3457889999999854421         223444  6


Q ss_pred             CCEEEEEe
Q 024345          205 TDFLVLAR  212 (269)
Q Consensus       205 ~Dlivla~  212 (269)
                      +|+++++-
T Consensus        67 vD~V~i~t   74 (334)
T 3ohs_X           67 VEVAYVGT   74 (334)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            88888764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=85.06  E-value=1.9  Score=39.15  Aligned_cols=70  Identities=11%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             CCeeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345          127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (269)
Q Consensus       127 ~~~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-  203 (269)
                      .++||+|+|.|. |. -+..+...  .+  .+++++|+...    ...+.++++++|++.....    +    +.++++ 
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~--~~--~~~lvav~d~~----~~~~~~~a~~~g~~~~~~~----~----~~~ll~~   85 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANT--VS--GVEVVAVCDIV----AGRAQAALDKYAIEAKDYN----D----YHDLIND   85 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--CT--TEEEEEEECSS----TTHHHHHHHHHTCCCEEES----S----HHHHHHC
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhh--CC--CcEEEEEEeCC----HHHHHHHHHHhCCCCeeeC----C----HHHHhcC
Confidence            468999999987 32 23333311  12  36777765543    3457888999997443332    1    223444 


Q ss_pred             -cCCEEEEEe
Q 024345          204 -NTDFLVLAR  212 (269)
Q Consensus       204 -~~Dlivla~  212 (269)
                       ++|+++++.
T Consensus        86 ~~~D~V~i~t   95 (357)
T 3ec7_A           86 KDVEVVIITA   95 (357)
T ss_dssp             TTCCEEEECS
T ss_pred             CCCCEEEEcC
Confidence             578887764

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=84.85  E-value=1.6  Score=40.21  Aligned_cols=75  Identities=12%  Similarity=0.124  Sum_probs=43.0

Q ss_pred             CCCCeeEEEEEeCCc-h-HHHHHHHhhh-cCCC--CceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHH
Q 024345          125 IDPKYKVAVLASKQE-H-CLVDFLYGWQ-EGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL  199 (269)
Q Consensus       125 ~~~~~riav~~Sg~g-~-~l~~ll~~~~-~g~l--~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~  199 (269)
                      ...|+||||+|.|.- . -+.++...-. ...+  .++|++|+...    ...+.++|+++|+|-.+-+         +-
T Consensus        23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~----~~~a~~~a~~~~~~~~y~d---------~~   89 (412)
T 4gqa_A           23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD----QAMAERHAAKLGAEKAYGD---------WR   89 (412)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS----HHHHHHHHHHHTCSEEESS---------HH
T ss_pred             ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC----HHHHHHHHHHcCCCeEECC---------HH
Confidence            346799999999873 2 2333322100 1111  25777665432    3567889999999865522         22


Q ss_pred             HHhc--cCCEEEEEe
Q 024345          200 ELVQ--NTDFLVLAR  212 (269)
Q Consensus       200 ~~l~--~~Dlivla~  212 (269)
                      ++|+  ++|+|+++.
T Consensus        90 ~ll~~~~vD~V~I~t  104 (412)
T 4gqa_A           90 ELVNDPQVDVVDITS  104 (412)
T ss_dssp             HHHHCTTCCEEEECS
T ss_pred             HHhcCCCCCEEEECC
Confidence            3444  678887754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=83.72  E-value=3.6  Score=31.93  Aligned_cols=72  Identities=15%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             CCCCeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh-
Q 024345          125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV-  202 (269)
Q Consensus       125 ~~~~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l-  202 (269)
                      .+.+.+|+|+|.|. |..+-..|..  .|   .+++++=.|+      ...+.+++.|+++.+-+..    +.+.++.. 
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~--~g---~~v~vid~~~------~~~~~~~~~g~~~i~gd~~----~~~~l~~a~   68 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLA--SD---IPLVVIETSR------TRVDELRERGVRAVLGNAA----NEEIMQLAH   68 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHH--TT---CCEEEEESCH------HHHHHHHHTTCEEEESCTT----SHHHHHHTT
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH--CC---CCEEEEECCH------HHHHHHHHcCCCEEECCCC----CHHHHHhcC
Confidence            34557899999987 5555444442  34   4555443333      2356667789998875532    23344433 


Q ss_pred             -ccCCEEEEE
Q 024345          203 -QNTDFLVLA  211 (269)
Q Consensus       203 -~~~Dlivla  211 (269)
                       +++|++|++
T Consensus        69 i~~ad~vi~~   78 (140)
T 3fwz_A           69 LECAKWLILT   78 (140)
T ss_dssp             GGGCSEEEEC
T ss_pred             cccCCEEEEE
Confidence             378988875

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=83.00  E-value=4  Score=36.53  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=42.6

Q ss_pred             CeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cC
Q 024345          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT  205 (269)
Q Consensus       128 ~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~  205 (269)
                      |+||+|+|.|.-..  ..+..+ .+  .+++++|....+......+.++++++|++...+.    +.+    ++++  ++
T Consensus         2 ~~rvgiiG~G~~~~--~~~~~l-~~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~ll~~~~v   68 (337)
T 3ip3_A            2 SLKICVIGSSGHFR--YALEGL-DE--ECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYN----NWW----EMLEKEKP   68 (337)
T ss_dssp             CEEEEEECSSSCHH--HHHTTC-CT--TEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECS----SHH----HHHHHHCC
T ss_pred             ceEEEEEccchhHH--HHHHhc-CC--CcEEEEEecCCchhhHHHHHHHHHHcCCCCcccC----CHH----HHhcCCCC
Confidence            58999999975322  334444 22  4788888875421122356677788898544332    222    3343  68


Q ss_pred             CEEEEEe
Q 024345          206 DFLVLAR  212 (269)
Q Consensus       206 Dlivla~  212 (269)
                      |.++++.
T Consensus        69 D~V~I~t   75 (337)
T 3ip3_A           69 DILVINT   75 (337)
T ss_dssp             SEEEECS
T ss_pred             CEEEEeC
Confidence            8888764

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=82.86  E-value=3.9  Score=37.62  Aligned_cols=72  Identities=13%  Similarity=0.089  Sum_probs=43.6

Q ss_pred             CCeeEEEEEeCC----ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCC--eEEeCCCCCchHHHHH
Q 024345          127 PKYKVAVLASKQ----EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELL  199 (269)
Q Consensus       127 ~~~riav~~Sg~----g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP--~~~~~~~~~~~e~~l~  199 (269)
                      +++||+|+|.|.    |. -+.++..   .+  .+++++++++++   .....++|+++|+|  -.+-     +.+ +++
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~---~~--~~~lva~v~d~~---~~~a~~~a~~~g~~~~~~~~-----~~~-~ll   76 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALR---DN--TFVLVAGAFDID---PIRGSAFGEQLGVDSERCYA-----DYL-SMF   76 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHG---GG--SEEEEEEECCSS---HHHHHHHHHHTTCCGGGBCS-----SHH-HHH
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhh---CC--CeEEEEEEeCCC---HHHHHHHHHHhCCCcceeeC-----CHH-HHH
Confidence            468999999997    22 2233322   22  267887677662   35678889999997  3321     222 344


Q ss_pred             HHh----ccCCEEEEEe
Q 024345          200 ELV----QNTDFLVLAR  212 (269)
Q Consensus       200 ~~l----~~~Dlivla~  212 (269)
                      +.-    .++|+|+++.
T Consensus        77 ~~~~~~~~~vD~V~i~t   93 (398)
T 3dty_A           77 EQEARRADGIQAVSIAT   93 (398)
T ss_dssp             HHHTTCTTCCSEEEEES
T ss_pred             hcccccCCCCCEEEECC
Confidence            331    1488888764

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=82.73  E-value=1.9  Score=39.64  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             CCeeEEEEEeC-Cc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345          127 PKYKVAVLASK-QE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (269)
Q Consensus       127 ~~~riav~~Sg-~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~  203 (269)
                      +++||+|+|.| ..  .-+..+..   .+  .+++++|+...    .....++|+++|+|++.      +    +-++++
T Consensus         1 ~~~rigiiG~G~~~~~~~~~~l~~---~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~~------~----~~ell~   61 (387)
T 3moi_A            1 MKIRFGICGLGFAGSVLMAPAMRH---HP--DAQIVAACDPN----EDVRERFGKEYGIPVFA------T----LAEMMQ   61 (387)
T ss_dssp             CCEEEEEECCSHHHHTTHHHHHHH---CT--TEEEEEEECSC----HHHHHHHHHHHTCCEES------S----HHHHHH
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHh---CC--CeEEEEEEeCC----HHHHHHHHHHcCCCeEC------C----HHHHHc
Confidence            36899999999 42  23344332   22  36787766543    34567889999999542      1    223343


Q ss_pred             --cCCEEEEEec
Q 024345          204 --NTDFLVLARY  213 (269)
Q Consensus       204 --~~Dlivla~y  213 (269)
                        ++|+++++--
T Consensus        62 ~~~vD~V~i~tp   73 (387)
T 3moi_A           62 HVQMDAVYIASP   73 (387)
T ss_dssp             HSCCSEEEECSC
T ss_pred             CCCCCEEEEcCC
Confidence              6888887643

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=82.68  E-value=4.2  Score=36.98  Aligned_cols=70  Identities=10%  Similarity=0.098  Sum_probs=41.5

Q ss_pred             CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--c
Q 024345          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (269)
Q Consensus       127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~  204 (269)
                      +++||+|+|.|..+.. .++...+.+  .+++++|+...    ...+.++|+++|++-.+-+         +-++++  +
T Consensus        25 ~~irvgiiG~G~~~~~-~~~~~~~~~--~~~lvav~d~~----~~~a~~~a~~~~~~~~~~~---------~~~ll~~~~   88 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIY-GQVNCLLRA--GARLAGFHEKD----DALAAEFSAVYADARRIAT---------AEEILEDEN   88 (361)
T ss_dssp             -CCEEEEECCCSTTHH-HHHHHHHHT--TCEEEEEECSC----HHHHHHHHHHSSSCCEESC---------HHHHHTCTT
T ss_pred             cCcEEEEECcCHHHHH-HHHHHhhcC--CcEEEEEEcCC----HHHHHHHHHHcCCCcccCC---------HHHHhcCCC
Confidence            4589999999985421 122222223  37888777643    3457888999986544422         223444  5


Q ss_pred             CCEEEEEe
Q 024345          205 TDFLVLAR  212 (269)
Q Consensus       205 ~Dlivla~  212 (269)
                      +|+++++.
T Consensus        89 vD~V~I~t   96 (361)
T 3u3x_A           89 IGLIVSAA   96 (361)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEEeC
Confidence            77777654

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=82.59  E-value=3.3  Score=37.01  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=41.9

Q ss_pred             CCeeEEEEEeCCc-hH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345          127 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (269)
Q Consensus       127 ~~~riav~~Sg~g-~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-  203 (269)
                      +++||+|+|.|.- .. +..|.+   .+  ..++++|....    ...+.++++++|+|..+-     +    +.++++ 
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~---~~--~~~l~av~d~~----~~~~~~~~~~~~~~~~~~-----~----~~~ll~~   65 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRE---SA--QAEVRGIASRR----LENAQKMAKELAIPVAYG-----S----YEELCKD   65 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHH---SS--SEEEEEEBCSS----SHHHHHHHHHTTCCCCBS-----S----HHHHHHC
T ss_pred             CeEEEEEECchHHHHHHHHHHHh---CC--CcEEEEEEeCC----HHHHHHHHHHcCCCceeC-----C----HHHHhcC
Confidence            5689999999983 33 333322   12  36777665533    356788899999974331     1    223444 


Q ss_pred             -cCCEEEEEec
Q 024345          204 -NTDFLVLARY  213 (269)
Q Consensus       204 -~~Dlivla~y  213 (269)
                       ++|+++++--
T Consensus        66 ~~~D~V~i~tp   76 (330)
T 3e9m_A           66 ETIDIIYIPTY   76 (330)
T ss_dssp             TTCSEEEECCC
T ss_pred             CCCCEEEEcCC
Confidence             6788877643

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=82.32  E-value=8.5  Score=35.01  Aligned_cols=103  Identities=13%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCC-CChhHH----HHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVI----RFLERHGIPYHYLCAKENEREEELLEL  201 (269)
Q Consensus       127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~-~~~~v~----~~a~~~gIP~~~~~~~~~~~e~~l~~~  201 (269)
                      ...||+++|-+.......++..+..  ++.++.  ++.|+.. |+..+.    +.|++.|..+....        ++.+.
T Consensus       147 ~gl~va~vGD~~~rva~Sl~~~~~~--~g~~v~--~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~--------d~~ea  214 (307)
T 2i6u_A          147 RGLRLSYFGDGANNMAHSLLLGGVT--AGIHVT--VAAPEGFLPDPSVRAAAERRAQDTGASVTVTA--------DAHAA  214 (307)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHH--TTCEEE--EECCTTSCCCHHHHHHHHHHHHHHTCCEEEES--------CHHHH
T ss_pred             CCeEEEEECCCCcCcHHHHHHHHHH--CCCEEE--EECCccccCCHHHHHHHHHHHHHcCCeEEEEE--------CHHHH
Confidence            4578999888733333333333211  235543  4444332 333344    44558888776653        23356


Q ss_pred             hccCCEEEEEecce-----------------eee---cccccccccccCCCccccCCCCCCCCCcHH
Q 024345          202 VQNTDFLVLARYMQ-----------------VNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINIS  248 (269)
Q Consensus       202 l~~~Dlivla~y~~-----------------il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~  248 (269)
                      ++++|+|.+-.|-+                 .+.   ++..+..++=     .||  ||.+||...-
T Consensus       215 v~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~-----mH~--lP~~Rg~EI~  274 (307)
T 2i6u_A          215 AAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIV-----LHC--LPAHRGDEIT  274 (307)
T ss_dssp             HTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEE-----EEC--SCCCBTTTBC
T ss_pred             hcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEE-----ECC--CCCCCCcccC
Confidence            67999999977711                 111   3333334555     887  8999995433

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=81.87  E-value=5.7  Score=35.35  Aligned_cols=70  Identities=9%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             CCCeeEEEEEeCC-chH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345          126 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (269)
Q Consensus       126 ~~~~riav~~Sg~-g~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~  203 (269)
                      .+++||+|+|.|. |.. ++.+.+.  .+  .+++++|+...    .....++++++|+|..+-+         +.++++
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~--~~--~~~~vav~d~~----~~~~~~~a~~~g~~~~~~~---------~~~~l~   68 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNK--IQ--GVKLVAACALD----SNQLEWAKNELGVETTYTN---------YKDMID   68 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHT--CS--SEEEEEEECSC----HHHHHHHHHTTCCSEEESC---------HHHHHT
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhc--CC--CcEEEEEecCC----HHHHHHHHHHhCCCcccCC---------HHHHhc
Confidence            4678999999987 333 2333211  12  36777665433    3456678889998744311         223344


Q ss_pred             --cCCEEEEEe
Q 024345          204 --NTDFLVLAR  212 (269)
Q Consensus       204 --~~Dlivla~  212 (269)
                        ++|+++.+.
T Consensus        69 ~~~~D~V~i~t   79 (346)
T 3cea_A           69 TENIDAIFIVA   79 (346)
T ss_dssp             TSCCSEEEECS
T ss_pred             CCCCCEEEEeC
Confidence              578777664

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=81.63  E-value=4.6  Score=36.17  Aligned_cols=69  Identities=12%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             CeeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--
Q 024345          128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (269)
Q Consensus       128 ~~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--  203 (269)
                      ++||+|+|.|. |. -+..+.+.  .+  .+++++|....    ...+.++++++||+.....    +    +.++++  
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~--~~--~~~l~av~d~~----~~~~~~~~~~~g~~~~~~~----~----~~~ll~~~   65 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNK--LS--GAEIVAVTDVN----QEAAQKVVEQYQLNATVYP----N----DDSLLADE   65 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--CS--SEEEEEEECSS----HHHHHHHHHHTTCCCEEES----S----HHHHHHCT
T ss_pred             eEEEEEECccHHHHHHHHHHHhh--CC--CcEEEEEEcCC----HHHHHHHHHHhCCCCeeeC----C----HHHHhcCC
Confidence            47999999987 32 22333211  12  36777665432    3457888999997544332    1    223444  


Q ss_pred             cCCEEEEEe
Q 024345          204 NTDFLVLAR  212 (269)
Q Consensus       204 ~~Dlivla~  212 (269)
                      ++|+++++.
T Consensus        66 ~~D~V~i~t   74 (344)
T 3mz0_A           66 NVDAVLVTS   74 (344)
T ss_dssp             TCCEEEECS
T ss_pred             CCCEEEECC
Confidence            588888764

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=81.43  E-value=6.8  Score=30.40  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=50.3

Q ss_pred             CCCCcceEEEEEEcCCCcChHHHHHHHHHhC---CCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASR---GGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        36 ~~~~~~~~iItV~G~DrpGIVa~VS~~La~~---giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      .-..+..+.+.|+|.+.++.+++|..++.++   +..+ ..+   .+.+|.|. ..+.+.+.    +.+++.+-.++|.+
T Consensus        30 lieFPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r---~Ss~GkY~Svtv~v~v~----S~eQv~aiY~~L~~  101 (109)
T 1rwu_A           30 LLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVK---PSSKGNYHSVSITINAT----HIEQVETLYEELGK  101 (109)
T ss_dssp             SSCCCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEE---ESSCSSEEEEEEEECCS----SHHHHHHHHHHHSC
T ss_pred             hccCCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eec---CCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhc
Confidence            4456678999999999999999999999988   6665 222   24468876 45555543    57888888877764


Q ss_pred             h
Q 024345          112 M  112 (269)
Q Consensus       112 e  112 (269)
                      .
T Consensus       102 ~  102 (109)
T 1rwu_A          102 I  102 (109)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=81.41  E-value=3.2  Score=39.04  Aligned_cols=76  Identities=9%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             eeEEEEEe-CC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-Cc--------hHHH
Q 024345          129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE--------REEE  197 (269)
Q Consensus       129 ~riav~~S-g~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~--------~e~~  197 (269)
                      +||+|+|| |+ |.+-.+++...  .  .++++++.+++   .-....+.|++++..++.+.... ..        -++.
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~--~--~~~vvaL~a~~---n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~   76 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKV--K--GIRLIGISFHS---NLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHS   76 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS--C--SEEEEEEEESS---CHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhC--C--CeEEEEEEccC---CHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHH
Confidence            79999996 65 55544555542  2  37999988866   33567888999998887654221 10        1234


Q ss_pred             HHHHhc--cCCEEEEE
Q 024345          198 LLELVQ--NTDFLVLA  211 (269)
Q Consensus       198 l~~~l~--~~Dlivla  211 (269)
                      +.+++.  ++|+++.|
T Consensus        77 l~el~~~~~~D~Vv~A   92 (376)
T 3a06_A           77 IEEMLEALKPDITMVA   92 (376)
T ss_dssp             HHHHHHHHCCSEEEEC
T ss_pred             HHHHhcCCCCCEEEEE
Confidence            556665  68888876

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=80.92  E-value=2.8  Score=37.47  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=37.2

Q ss_pred             CCeeEEEEEeCCc-hH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345          127 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (269)
Q Consensus       127 ~~~riav~~Sg~g-~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-  203 (269)
                      +++||+|+|.|.- .. +..+..   .+  ..++++|....+    ..+.++|+++|+|-.+-+         +.++++ 
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~---~~--~~~~~av~d~~~----~~~~~~a~~~~~~~~~~~---------~~~ll~~   65 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRL---AG--NGEVVAVSSRTL----ESAQAFANKYHLPKAYDK---------LEDMLAD   65 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHH---HC--SEEEEEEECSCS----STTCC---CCCCSCEESC---------HHHHHTC
T ss_pred             CceEEEEEechHHHHHHHHHHHh---CC--CcEEEEEEcCCH----HHHHHHHHHcCCCcccCC---------HHHHhcC
Confidence            4689999999973 32 333322   23  367887765432    235677888998844311         123444 


Q ss_pred             -cCCEEEEEe
Q 024345          204 -NTDFLVLAR  212 (269)
Q Consensus       204 -~~Dlivla~  212 (269)
                       ++|+++++-
T Consensus        66 ~~~D~V~i~t   75 (329)
T 3evn_A           66 ESIDVIYVAT   75 (329)
T ss_dssp             TTCCEEEECS
T ss_pred             CCCCEEEECC
Confidence             577777653

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=80.86  E-value=3.4  Score=37.21  Aligned_cols=71  Identities=23%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             CCCCeeEEEEEeCC--ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHH
Q 024345          125 IDPKYKVAVLASKQ--EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (269)
Q Consensus       125 ~~~~~riav~~Sg~--g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~  201 (269)
                      +..++||+|+|.|.  |. -+..+..   .+. .+++++|+...    ...+.++|+++|+|-.+-+         +.++
T Consensus        15 ~~~~irvgiIG~G~~~g~~~~~~l~~---~~~-~~~lvav~d~~----~~~~~~~a~~~~~~~~~~~---------~~~l   77 (340)
T 1zh8_A           15 PLRKIRLGIVGCGIAARELHLPALKN---LSH-LFEITAVTSRT----RSHAEEFAKMVGNPAVFDS---------YEEL   77 (340)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHT---TTT-TEEEEEEECSS----HHHHHHHHHHHSSCEEESC---------HHHH
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHHh---CCC-ceEEEEEEcCC----HHHHHHHHHHhCCCcccCC---------HHHH
Confidence            45779999999993  33 3344322   111 36787765533    3457788999998655422         2234


Q ss_pred             hc--cCCEEEEEe
Q 024345          202 VQ--NTDFLVLAR  212 (269)
Q Consensus       202 l~--~~Dlivla~  212 (269)
                      ++  ++|+++.+-
T Consensus        78 l~~~~vD~V~i~t   90 (340)
T 1zh8_A           78 LESGLVDAVDLTL   90 (340)
T ss_dssp             HHSSCCSEEEECC
T ss_pred             hcCCCCCEEEEeC
Confidence            44  578877764

>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8

Probab=80.84  E-value=1.3  Score=35.77  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=42.4

Q ss_pred             EEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        44 iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      .|++.|+   |-.||++++|+.|++.||.|--++++..   +.    +-  +|.  .+.++--++|.+.+.++.
T Consensus        64 ~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~t---D~----Il--Vp~--~~~~~Ai~aL~~~~~~~~  126 (134)
T 1zhv_A           64 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDG---DH----LL--VRS--NDLEKTADLLANAGHSLL  126 (134)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSC---EE----EE--EEG--GGHHHHHHHHHHTTCEEE
T ss_pred             EEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEeccc---cE----EE--EeH--HHHHHHHHHHHHcCceee
Confidence            6777777   9999999999999999999999988632   21    11  232  245555666666655554

>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}

Probab=80.47  E-value=8.9  Score=31.00  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             CCCCCeeEEEEEeCCc---hHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHH
Q 024345          124 DIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE  200 (269)
Q Consensus       124 ~~~~~~riav~~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~  200 (269)
                      .+..++||.|+.+|+-   .-.+.+++..-.+.  .++.--=+.+...++..+++.++++||++-..-.+.  -+++   
T Consensus        16 ~~~~~~~VLFVC~gN~cRSpmAEal~~~~~~~~--~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~h~ar~--l~~~---   88 (148)
T 3rh0_A           16 RGSHMKSVLFVCVGNGGKSQMAAALAQKYASDS--VEIHSAGTKPAQGLNQLSVESIAEVGADMSQGIPKA--IDPE---   88 (148)
T ss_dssp             ----CCEEEEEESSSSSHHHHHHHHHHHHCCTT--SEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCCCCB--CCHH---
T ss_pred             CcCCCCEEEEECCCchhHHHHHHHHHHHhcCCC--EEEEecccCCCCCCCHHHHHHHHHcCCCcCCCeeeE--CCHH---
Confidence            3556789999999995   44566666544333  444322222222256789999999999864222211  1111   


Q ss_pred             HhccCCEEEEE
Q 024345          201 LVQNTDFLVLA  211 (269)
Q Consensus       201 ~l~~~Dlivla  211 (269)
                      .++++|+|+..
T Consensus        89 ~~~~~DlIitM   99 (148)
T 3rh0_A           89 LLRTVDRVVIL   99 (148)
T ss_dssp             HHHHCSEEEEE
T ss_pred             HhcCCCEEEEe
Confidence            12368999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1meoa_	205	c.65.1.1 (A:) Glycinamide ribonucleotide transform	2e-07
d1jkxa_	209	c.65.1.1 (A:) Glycinamide ribonucleotide transform	1e-06
d1u8sa2	93	d.58.18.5 (A:88-180) putative transcriptional repr	6e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	1e-05
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	8e-05

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           +VAVL S     L   +   +E     +I  VISN                    ++   
Sbjct: 2   RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61

Query: 190 KENEREEELLELV---QNTDFLVLARYMQ 215
           K     +  ++LV    + D + LA +M+
Sbjct: 62  KNRVEFDSAIDLVLEEFSIDIVCLAGFMR 90

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 3/108 (2%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLC 188
            + VL S     L   +   +  K+   +  V SN  D        +             
Sbjct: 2   NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61

Query: 189 AKENEREEELLELVQ--NTDFLVLARYMQVNRIRLYVAQLFSCLVTEQ 234
                 + EL+  +     D +VLA +M++             L    
Sbjct: 62  DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHP 109

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 39  TLTHGIHVF-HCPDEVGIVAKLSECIASRGGNILAADV------FVPEKKNVFYSRSEFI 91
           T  + + V+    D++G+  K ++  A R   + +          +  ++N F+      
Sbjct: 2   THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR 61

Query: 92  FDPIKWPREQMDEDFFKLSKMFNA 115
                    Q+ E+F  L    + 
Sbjct: 62  V-DSGCNLMQLQEEFDALCTALDV 84

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
               D  GI  ++   +   G NI+ + + +  K+             I     +++   
Sbjct: 10  AVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNI----TRVETTL 65

Query: 107 FKLSKMFNAMRSVVRV 122
             L +  + +  + R 
Sbjct: 66  PLLGQQHDLITMMKRT 81

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
               D+ GIVA +S  IA  G NI      V ++     +               +  +F
Sbjct: 7   VVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ---DFTYLRNEF 63

Query: 107 FKLSKMFN 114
               +  N
Sbjct: 64  EAFGQTLN 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1jkxa_	209	Glycinamide ribonucleotide transformylase, GART {E	99.98
d1meoa_	205	Glycinamide ribonucleotide transformylase, GART {H	99.97
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	99.94
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	99.92
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	99.92
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	99.76
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	99.75
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	99.64
d1zgha2	164	Methionyl-tRNAfmet formyltransferase {Clostridium	99.61
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	98.22
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	98.1
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.1
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.08
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.81
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.8
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.54
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.24
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.44
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.13
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.93
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.72
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.33
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	94.77
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	94.58
d2d13a1	226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	93.86
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.33
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	91.19
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.05
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	89.81
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	88.85
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	88.62
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	87.7
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	87.17
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	86.51
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.19
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	86.01
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	85.44
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	83.45
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.17
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	81.68

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=2e-32  Score=238.58  Aligned_cols=132  Identities=20%  Similarity=0.237  Sum_probs=121.0

Q ss_pred             eeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCC-CC---chHHHHHHHhc-
Q 024345          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLELVQ-  203 (269)
Q Consensus       129 ~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~-~~---~~e~~l~~~l~-  203 (269)
                      ||||||+||+|+||++|+++++.+.++++|++|+||+   +++...++|++.++|......+ ..   ..|+++.+.++ 
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNK---ADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESC---TTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCC---CCcccchhhhccccceeeeeccccccccchHHHHHHHHHh
Confidence            7999999999999999999999999999999999998   6788999999999999887632 21   23567778887 


Q ss_pred             -cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 -NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 -~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                       ++|++|++|||+|++   ++.|+.|+||     +||||||+|||.+|++||+.+|++++|+|+|+||+
T Consensus        78 ~~~Dliv~~g~~~il~~~~l~~~~~~~iN-----~HpslLP~~rG~~p~~~~i~~g~~~~G~t~h~~~~  141 (209)
T d1jkxa_          78 YAPDVVVLAGFMRILSPAFVSHYAGRLLN-----IHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTD  141 (209)
T ss_dssp             GCCSEEEESSCCSCCCHHHHHHTTTSEEE-----EESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             cCCCEEEEeeeeEecChhhhcccccCEEE-----eCCchhcccCCcCchhHHHHCCCeeecceEEEecC
Confidence             999999999999999   9999999999     99999999999999999999999999999999986

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=232.09  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=119.8

Q ss_pred             eEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCC-C---chHHHHHHHhc--
Q 024345          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ--  203 (269)
Q Consensus       130 riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~-~---~~e~~l~~~l~--  203 (269)
                      |||||+||+|+||++|+++++.+.++++|++|+||+   +++....+|+..++|......+. .   ..++++.+.++  
T Consensus         2 ri~vl~SG~Gsnl~aLl~~~~~~~l~~~I~~Vitn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   78 (205)
T d1meoa_           2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNK---AAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEF   78 (205)
T ss_dssp             EEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCcHhHHHHHHHHhcCCCCCEEEEEEECC---ccccccccccccccccccccccccchhhhHHHHHHHHHhhc
Confidence            899999999999999999999999999999999998   67889999999999998876322 1   23467777777  


Q ss_pred             cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 ~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ++|++|++|||+|++   ++.|+.|+||     +||||||+|||.+|++||+.+|++++|+|+|+||+
T Consensus        79 ~~Dliv~~g~~~il~~~~l~~~~~~~iN-----~HpslLP~~rG~~~~~~ai~~g~~~~G~tih~v~~  141 (205)
T d1meoa_          79 SIDIVCLAGFMRILSGPFVQKWNGKMLN-----IHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAE  141 (205)
T ss_dssp             TCCEEEEESCCSCCCHHHHHHTTTSEEE-----EESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC
T ss_pred             ccceeeeechhcccCHHHHHhccCCeee-----cCccccchhhhhhhHHHHHhcCCcccceeEEeecC
Confidence            899999999999999   8999999999     99999999999999999999999999999999986

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=205.68  Aligned_cols=129  Identities=16%  Similarity=0.062  Sum_probs=109.1

Q ss_pred             eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCC-CCChhHHHHHHhCCCCeEEeCCC--CCchHHHHHHHhc
Q 024345          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDR-GPNSHVIRFLERHGIPYHYLCAK--ENEREEELLELVQ  203 (269)
Q Consensus       129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~-~~~~~v~~~a~~~gIP~~~~~~~--~~~~e~~l~~~l~  203 (269)
                      |||+||||+..  .+|+.|++   +|   ++|++|+|.+|+ ....++.++|+++|||++.....  ....+.++++.++
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~---~~---~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~   74 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRK---EG---HEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQ   74 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHH---TT---CEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHH---CC---CcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHH
Confidence            79999999874  56777665   33   799999998765 23468999999999999886522  1223456777776


Q ss_pred             --cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          204 --NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       204 --~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                        ++|++|+++|++|++   ++.++.|++|     +|||+||+|||++|++||+.+|++++|+|+|+||+
T Consensus        75 ~~~~Dliv~~~~~~ii~~~~l~~~~~g~iN-----~H~slLP~yrG~~pi~wai~~g~~~~GvTih~~~~  139 (203)
T d2bw0a2          75 ALGAELNVLPFCSQFIPMEIISAPRHGSII-----YHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADD  139 (203)
T ss_dssp             TTCCSEEEESSCSSCCCHHHHTCSTTCEEE-----EESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             HhCCCceEEeecchhhhhhhhhhhhhHhhh-----hhhcccccccccceeeeeecccccccCceeEEecc
Confidence              899999999999999   9999999999     99999999999999999999999999999999986

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.7e-25  Score=192.87  Aligned_cols=128  Identities=17%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC-------CChhHHHHHHhCCCCeEEeCCCCCchHHH
Q 024345          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEE  197 (269)
Q Consensus       127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~e~~  197 (269)
                      .+|||+||||+..  .+|+.|++   .|   ++|++|+|.+++.       .......+|..+++|+......   .+++
T Consensus         2 ~~mKI~f~G~~~~~~~~L~~L~~---~~---~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   72 (206)
T d1fmta2           2 ESLRIIFAGTPDFAARHLDALLS---SG---HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL---RPQE   72 (206)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHH---TT---CEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCS---CSHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHh---CC---CCEEEEEeCCCcccccCccccccchhhhhhccCccccccccc---cchh
Confidence            5789999999875  67888776   34   6899999987541       1246788999999999986522   2345


Q ss_pred             HHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          198 LLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       198 l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      ..+.++  ++|++++++|+++++   ++.++.|+||     +|||+||+|||.+|+.||+.+|++++|+|+|+||+
T Consensus        73 ~~~~~~~~~~d~~v~~~~~~ii~~~il~~~k~g~iN-----~Hps~LP~yRG~~pi~wai~nge~~~GvT~h~i~~  143 (206)
T d1fmta2          73 NQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCIN-----VHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDV  143 (206)
T ss_dssp             HHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEE-----EESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCS
T ss_pred             hHHHHhhhcceEEEeeccccccchhhHhcCCCCeee-----cCchhhHhhhhhhhhhhHHHcCCceeceeEEEecc
Confidence            666676  899999999999999   8999999999     99999999999999999999999999999999986

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.9e-25  Score=193.08  Aligned_cols=126  Identities=17%  Similarity=0.109  Sum_probs=107.0

Q ss_pred             eeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCC----CChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHh
Q 024345          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (269)
Q Consensus       129 ~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l  202 (269)
                      |||++|+++..  .+|++|++   .|   ++|++|+|.+++.    -.+++.++|+++|||++.... .  .++++++.+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~---~g---~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~-~--~~~~~~~~i   71 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLA---AG---YEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDN-V--NHPLWVERI   71 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHH---TT---CEEEEEECCCC------CCCCHHHHHHHHTCCEECCSC-C--CSHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHHH---CC---CCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceeccc-c--cchhhhhhh
Confidence            79999998874  68888886   34   6999999987541    125689999999999987542 1  134567777


Q ss_pred             c--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCcHHHHHHHcCCCeeeEEEEEecc
Q 024345          203 Q--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGINISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       203 ~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      +  ++|+++++||++|++   ++.++.++||     +|||+||.|||.+|+.||+.+|++.+|+|+|++|+
T Consensus        72 ~~~~~Dlii~~g~~~ii~~~il~~~~~~~iN-----~H~slLP~yrG~~p~~wai~~g~~~~G~Tih~i~~  137 (203)
T d2blna2          72 AQLSPDVIFSFYYRHLIYDEILQLAPAGAFN-----LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK  137 (203)
T ss_dssp             HHTCCSEEEEESCCSCCCHHHHTTCTTCEEE-----EESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCS
T ss_pred             hhhcccceeeeecccchhcccchhhHHHHHH-----HhhhcchhhhhhhhhhhhhhcccccccceeEEeec
Confidence            7  999999999999999   8999999999     99999999999999999999999999999999986

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=1.7e-18  Score=129.01  Aligned_cols=76  Identities=24%  Similarity=0.184  Sum_probs=69.8

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhccceeee
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~~~  120 (269)
                      |+++||++|+||||||++||++|+++|+||.+++|+..  .+.|.|++.++.|+ +.+.++|+++|+.+++++|+ +|..
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~-~~~~~~l~~~l~~la~~l~l-~i~i   76 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNV-KINI   76 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTE-EEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEec-CCCHHHHHHHHHHHHHHcCc-EEEE
Confidence            56899999999999999999999999999999999865  78999999999996 78899999999999999994 6544

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=5.3e-18  Score=129.13  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc------CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~------~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~e  112 (269)
                      ...++.++|.|+||||||++||++|+++|+||++++++..      ...+.|+|++++.+|+ +.+.++|+++|+.+|++
T Consensus         3 ~~~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-~~~~~~l~~~l~~l~~~   81 (93)
T d1u8sa2           3 HAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCTA   81 (93)
T ss_dssp             CSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc-cccHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999753      1245899999999997 89999999999999999


Q ss_pred             hccceeee
Q 024345          113 FNAMRSVV  120 (269)
Q Consensus       113 l~l~~~~~  120 (269)
                      ++ |+|+.
T Consensus        82 l~-v~~si   88 (93)
T d1u8sa2          82 LD-VQGSL   88 (93)
T ss_dssp             HT-CEEEE
T ss_pred             ce-eEEEE
Confidence            99 57654

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.64  E-value=3.7e-16  Score=117.08  Aligned_cols=81  Identities=12%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcccee
Q 024345           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (269)
Q Consensus        39 ~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l~~~  118 (269)
                      ..++++||++|+||||||++||++|+++||||++++++..  ++.|.+.+.++.++  .+.++|+++|+++++++|+ .+
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~--~~~~~l~~~L~~l~~~l~l-~i   76 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSP--SNITRVETTLPLLGQQHDL-IT   76 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECH--HHHHHHHHHHHHHHHHHTC-EE
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCc--ccHHHHHHHHHHHHHHhCC-EE
Confidence            4578999999999999999999999999999999999765  78999999999885  3689999999999999995 66


Q ss_pred             eeeecC
Q 024345          119 VVRVPD  124 (269)
Q Consensus       119 ~~~~~~  124 (269)
                      +++...
T Consensus        77 ~~~~~~   82 (86)
T d1u8sa1          77 MMKRTS   82 (86)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            655543

>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.61  E-value=3.5e-16  Score=130.47  Aligned_cols=88  Identities=9%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             hHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cCCEEEEEecceeee---cccccccccccCCCccccCCCCCCCCCc
Q 024345          172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQVNR---IRLYVAQLFSCLVTEQLTVLNSSLGGIN  246 (269)
Q Consensus       172 ~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~Dlivla~y~~il~---l~~~~~~~iN~~~~~iHpSLLP~~rG~~  246 (269)
                      ....++++.+.++.....+. ..+ ...+.++  ++|+++++||++|++   ++.+  |++|     +|||+||.|||.+
T Consensus        15 ~~~~~~k~~~~~~~~~~~~n-~~~-~~~~~i~~~~~D~ii~~g~~~ii~~~il~~~--~~in-----~H~s~LP~yRG~~   85 (164)
T d1zgha2          15 NAQKFKKENESKYNTTIITN-KDE-LTFEKVKLINPEYILFPHWSWIIPKEIFENF--TCVV-----FHMTDLPFGRGGS   85 (164)
T ss_dssp             HHHHHHHHTTTTEEEEEECS-GGG-CCHHHHHHHCCSEEEESSCCSCCCHHHHTTS--CEEE-----EESSCTTTTEESC
T ss_pred             HHHHHHHHhcCccceeeecC-hhH-HHHHHHHhcCCCEEEEeCcccccCHHHHhhC--CCcc-----CCCCchhcccccc
Confidence            46777888888877643111 111 1123344  899999999999999   7755  7999     9999999999999


Q ss_pred             HHHHHHHcCCCeeeEEEEEecc
Q 024345          247 ISLSSFDATIEWISLLKFRRTF  268 (269)
Q Consensus       247 p~~~A~~~G~~~tG~Tvh~v~~  268 (269)
                      |+.||+.+|++.+|+|+|+||+
T Consensus        86 p~~wai~~~~~~~Gvtih~~~~  107 (164)
T d1zgha2          86 PLQNLIERGIKKTKISAIKVDG  107 (164)
T ss_dssp             HHHHHHHTTCCEEEEEEEECCS
T ss_pred             ccccccccccccccceeEEecc
Confidence            9999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=3e-06  Score=61.57  Aligned_cols=71  Identities=20%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~e  112 (269)
                      |++++|++.-.|+||+.++||+.|+.+|.||..++.......|.-.|.+.++..+  ...+++...|+++-+=
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~--~~i~qi~kQl~KlidV   71 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKLVEV   71 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTSTTE
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCH--HHHHHHHHHHhCCcCE
Confidence            4688999999999999999999999999999999987655677777878887653  3577777777776543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.10  E-value=3.1e-06  Score=61.33  Aligned_cols=69  Identities=19%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      |+.+|++.-.|+||+.++||..|+.+|+||..++.......|...|.+.++.++  ...+++...|+++-+
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~--~~i~qi~kQL~Klvd   69 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--EIVEQITKQLNKLIE   69 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH--HHHHHHHHHHHHSTT
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCH--HHHHHHHHHHhCCcC
Confidence            467899999999999999999999999999999997655677878888887653  246667777776544

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.10  E-value=7.7e-06  Score=58.95  Aligned_cols=65  Identities=15%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             EEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        43 ~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      ..+.+.-.|+||+++.|++.|+++|+||..+.......+|.-.|.++++-+    -.+++.+++.++-+
T Consensus         4 ~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~----~~~~vl~~I~~~~~   68 (78)
T d1ygya3           4 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----VPDDVRTAIAAAVD   68 (78)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----CCHHHHHHHHHHHT
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCC----ccHHHHHHHHcCCC
Confidence            567778899999999999999999999999876533345555666666533    23666666666543

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.08  E-value=8.6e-07  Score=64.04  Aligned_cols=65  Identities=20%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~-~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la  110 (269)
                      -|.+.+.||||+.++|+++++++|+||..+++... .+.....+.+++...  +.+.+.+-+.|..+-
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~--~~~l~~ll~kL~~l~   68 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE--GGDFEKILERVKTFD   68 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC--SSCHHHHHHHHHTCT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC--cccHHHHHHHHHcCC
Confidence            47899999999999999999999999999998742 222333444555433  235677766666543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.6e-05  Score=57.88  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      .+..+++.=.|+||++++|++.|+++|+||.++....
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            3457777889999999999999999999999997753

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2.3e-05  Score=56.50  Aligned_cols=68  Identities=19%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             eEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhh
Q 024345           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (269)
Q Consensus        42 ~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~  111 (269)
                      +.++++.-.|+||+.++||..|+.+|.||+.++.......|.-.|.+.+...  +...+++...|+++-+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~--~~~i~qi~kQL~Klid   68 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLVD   68 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHSTT
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCCC
Confidence            3578899999999999999999999999999998754455665666666543  2245666666666543

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.54  E-value=0.00027  Score=49.77  Aligned_cols=60  Identities=10%  Similarity=0.080  Sum_probs=43.3

Q ss_pred             ceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHh
Q 024345           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (269)
Q Consensus        41 ~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~  108 (269)
                      ..--|+|.-.||||..++|++.|+++|+||..++.......|.+  |+.++      +.+.-.+.|.+
T Consensus         2 ~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~--Riiv~------~~e~a~~~L~~   61 (70)
T d2f06a2           2 VAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGIL--RGIVS------DPDKAYKALKD   61 (70)
T ss_dssp             EEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEE--EEEES------CHHHHHHHHHH
T ss_pred             ceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEE--EEEEC------ChHHHHHHHHH
Confidence            34458999999999999999999999999999998654333433  45444      24444555544

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.24  E-value=0.00047  Score=48.41  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~l  109 (269)
                      +|.|.-+||||-.+++++.|+++|+||..+..+...  +.=.+++.++      +.+.-.+.|.+-
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~--~~~~~vl~vd------d~~~a~~~L~~~   58 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANN--NVANVVIRPS------NMDKCIEVLKEK   58 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEET--TEEEEEEEES------CHHHHHHHHHHT
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCC--CcEEEEEEEC------CHHHHHHHHHHC
Confidence            578888999999999999999999999999887542  2212344442      456667776654

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.44  E-value=0.0056  Score=43.61  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=46.4

Q ss_pred             EEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhh
Q 024345           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (269)
Q Consensus        44 iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~e  112 (269)
                      .+.+.-.|+||-.+++-+.++++|+|+..+.+.... ..+.|..-++++..   .+ +.++++++++.+.
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~---~~-~~~~~~l~~L~~~   69 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSA---IT-TDIKKVIAILETL   69 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCC---SC-HHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecC---Cc-HHHHHHHHHHHHh
Confidence            344556899999999999999999999999997432 23455545555532   23 4577777777543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.13  E-value=0.0078  Score=47.91  Aligned_cols=72  Identities=24%  Similarity=0.337  Sum_probs=49.0

Q ss_pred             CCeeEEEEEeCC-chH-HHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345          127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (269)
Q Consensus       127 ~~~riav~~Sg~-g~~-l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-  203 (269)
                      +|+||||+|+|. |.. +..+++.  .+  ..++++|.+.+   +.+....+|+++|+|+.+-      ..+++++..+ 
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~--~~--~~el~avas~~---~~~~~~~~a~~~~i~~~~~------~~d~l~~~~~~   69 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRN--AK--YLEMGAMVGID---AASDGLARAQRMGVTTTYA------GVEGLIKLPEF   69 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH--CS--SEEEEEEECSC---TTCHHHHHHHHTTCCEESS------HHHHHHHSGGG
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhh--CC--cceEEEEEecc---hhccchhhhhhcCCccccc------ceeeeeecccc
Confidence            679999999886 332 4444432  22  36899888755   4567789999999999862      1234555544 


Q ss_pred             -cCCEEEEE
Q 024345          204 -NTDFLVLA  211 (269)
Q Consensus       204 -~~Dlivla  211 (269)
                       +.|+++.|
T Consensus        70 ~~iDiVf~A   78 (157)
T d1nvmb1          70 ADIDFVFDA   78 (157)
T ss_dssp             GGEEEEEEC
T ss_pred             cccCEEEEc
Confidence             68888864

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.93  E-value=0.017  Score=39.56  Aligned_cols=60  Identities=15%  Similarity=0.069  Sum_probs=43.9

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..++++|.   ++||+.+++.+.|+++|+||.-++|..    ....+.+.|+  +     ++..+++..|-++|
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~----Se~~Is~~V~--~-----~d~~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS----SEVNISFVID--E-----KDLLNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS----CSSEEEEEEE--G-----GGHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC----ccceEEEEEe--H-----HHHHHHHHHHHHHH
Confidence            47899994   999999999999999999999998832    2334444443  2     44666666666555

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.012  Score=43.39  Aligned_cols=72  Identities=15%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             cceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhcc
Q 024345           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (269)
Q Consensus        40 ~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~-~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~l  115 (269)
                      ..+..|.+.-+|+||-.+++-+.|+++|+|+..+.+.... ..+.|..-+  ++.. . .-+.++.+++.+.++.+.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i--d~eg-~-~~~~i~~~l~~L~~~~~~   86 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT--YLDK-R-TKPVLGSIIKSLRNDIGA   86 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE--CBCG-G-GHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE--Eccc-C-ChHHHHHHHHHHHHhhCc
Confidence            3445556667899999999999999999999999997543 233444333  3333 2 346789999988877764

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.33  E-value=0.012  Score=43.53  Aligned_cols=63  Identities=11%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             ceEEEEEEc---CCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        41 ~~~iItV~G---~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      .-..|+++|   +++||+.+++.+.|+++|+||.-++|...    .-  .+.+.+++     +++.+++..|-++|.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~S----e~--~Isf~V~~-----~d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS----ET--NISLVVSE-----EDVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCT----TC--CEEEEECS-----TTHHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCC----cc--eEEEEEeH-----HHHHHHHHHHHHHHH
Confidence            456899999   59999999999999999999999988421    11  24455554     234555555555554

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.77  E-value=0.027  Score=40.77  Aligned_cols=36  Identities=14%  Similarity=0.113  Sum_probs=32.4

Q ss_pred             ceEEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeee
Q 024345           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (269)
Q Consensus        41 ~~~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~   76 (269)
                      .-..|++.|.   ++||+.+++.+.|+++|+||.-++|.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S   50 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS   50 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            3568899986   99999999999999999999999873

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.037  Score=38.71  Aligned_cols=62  Identities=11%  Similarity=-0.002  Sum_probs=46.3

Q ss_pred             eEEEEEEcC--CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhhc
Q 024345           42 HGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (269)
Q Consensus        42 ~~iItV~G~--DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el~  114 (269)
                      +.+|+++|.  ++||+.+++.+.|++.|+||.-++|..    ....+.+.++       .++..+++..+-+.|-
T Consensus         1 ~a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~----se~~Is~vV~-------~~d~~~Av~~Lh~~f~   64 (75)
T d2cdqa3           1 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA----SKVNISFIVN-------EAEAEGCVQALHKSFF   64 (75)
T ss_dssp             EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT----TCSEEEEEEE-------HHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCc----cceEEEEEEe-------HHHHHHHHHHHHHHHh
Confidence            367899994  789999999999999999999998832    3344445443       3566777777766663

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Hypothetical protein PH1257
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.86  E-value=0.11  Score=43.61  Aligned_cols=81  Identities=19%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             CCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------hhHHHHHHhCCCCeEEeCCCC-C-chH
Q 024345          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAKE-N-ERE  195 (269)
Q Consensus       127 ~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~---------~~v~~~a~~~gIP~~~~~~~~-~-~~e  195 (269)
                      .++||+++.||.--+..++..+.++|   ++|++++|..+...+         .-+..-|+..|||.+...... . ...
T Consensus         2 ~~~~V~vl~SGGKDS~lAl~~a~~~G---~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~~e~~~   78 (226)
T d2d13a1           2 GLADVAVLYSGGKDSNYALYWALKSG---LRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEV   78 (226)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CTTSHH
T ss_pred             CceeEEEEecCcHHHHHHHHHHHHcC---CeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCcchHHH
Confidence            46899999999864444677777777   688887666433111         226777999999987665221 1 222


Q ss_pred             HHHHHHhc--cCCEEEE
Q 024345          196 EELLELVQ--NTDFLVL  210 (269)
Q Consensus       196 ~~l~~~l~--~~Dlivl  210 (269)
                      +++.++++  ++|.++.
T Consensus        79 ~~l~~~l~~~~v~~vv~   95 (226)
T d2d13a1          79 EDLKNVLEGLKVDGIVA   95 (226)
T ss_dssp             HHHHHHHHTBCCSEEEC
T ss_pred             HHHHHHHHhcCccceEe
Confidence            55666666  7887764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.33  E-value=0.15  Score=39.97  Aligned_cols=113  Identities=11%  Similarity=0.099  Sum_probs=66.0

Q ss_pred             CCeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhcc
Q 024345          127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN  204 (269)
Q Consensus       127 ~~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~  204 (269)
                      .|+||++|||..  |.+..+++++..+   .++|.++.+++   .-....+.|++++-.+.++..+.  ..+++.+.+.+
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d---~f~v~~lsa~~---N~~~L~~q~~ef~Pk~v~i~d~~--~~~~l~~~~~~   72 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLD---RYQVIALTANR---NVKDLADAAKRTNAKRAVIADPS--LYNDLKEALAG   72 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGG---GEEEEEEEESS---CHHHHHHHHHHTTCSEEEESCGG--GHHHHHHHTTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCC---CcEEEEEEeCC---CHHHHHHHHHhhccccceeccHH--HHHHHHHHhhh
Confidence            368999999987  5666677765322   48999999887   34568889999998888776321  12233344433


Q ss_pred             CCEEEEEecceeeecccc-cccccccCCCccccCCCCCCCCCcHHHHHHHcCC
Q 024345          205 TDFLVLARYMQVNRIRLY-VAQLFSCLVTEQLTVLNSSLGGINISLSSFDATI  256 (269)
Q Consensus       205 ~Dlivla~y~~il~l~~~-~~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~  256 (269)
                      .+.-+..|.--+..+... ..-++|         =..-+.|..|...|+.+|-
T Consensus        73 ~~~~v~~g~~~l~~~~~~~~D~vv~---------Ai~G~~GL~~tl~ai~~gk  116 (150)
T d1r0ka2          73 SSVEAAAGADALVEAAMMGADWTMA---------AIIGCAGLKATLAAIRKGK  116 (150)
T ss_dssp             CSSEEEESHHHHHHHHTSCCSEEEE---------CCCSGGGHHHHHHHHHTTS
T ss_pred             cccccccCccchheecccccceeee---------ecCchhHHHHHHHHHhcCC
Confidence            344444333222221111 111344         2244556667777777773

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=91.19  E-value=0.27  Score=38.59  Aligned_cols=113  Identities=12%  Similarity=0.095  Sum_probs=70.7

Q ss_pred             CeeEEEEEeCC--chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--
Q 024345          128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (269)
Q Consensus       128 ~~riav~~Sg~--g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--  203 (269)
                      |+||++|||..  |.+..++++..   .-.++|+++.+++   .-....+.|.++.-.+..+...  +..+++.+.+.  
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~---~d~f~v~~Lsa~~---N~~~L~~q~~~f~pk~v~i~d~--~~~~~l~~~l~~~   72 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHN---PEHFRVVALVAGK---NVTRMVEQCLEFSPRYAVMDDE--ASAKLLKTMLQQQ   72 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC---TTTEEEEEEEESS---CHHHHHHHHHHHCCSEEEESSH--HHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhC---CCCcEEEEEEecC---cHHHHHHHHHHHhhcccccccH--HHHHHHHHHhhhh
Confidence            57899999987  45555666642   2248999998876   2345788899999777776521  11133444443  


Q ss_pred             cCCEEEEEecceeee-ccccc-ccccccCCCccccCCCCCCCCCcHHHHHHHcCCC
Q 024345          204 NTDFLVLARYMQVNR-IRLYV-AQLFSCLVTEQLTVLNSSLGGINISLSSFDATIE  257 (269)
Q Consensus       204 ~~Dlivla~y~~il~-l~~~~-~~~iN~~~~~iHpSLLP~~rG~~p~~~A~~~G~~  257 (269)
                      ..+.-++.|.--+.. ....+ .-++|         =.+-+.|..|...|+.+|-+
T Consensus        73 ~~~~~~~~g~~~l~~~~~~~~~D~vi~---------AI~G~aGL~~t~~aik~gk~  119 (151)
T d1q0qa2          73 GSRTEVLSGQQAACDMAALEDVDQVMA---------AIVGAAGLLPTLAAIRAGKT  119 (151)
T ss_dssp             TCCCEEEESHHHHHHHHTCTTCCEEEE---------CCSSGGGHHHHHHHHHTTCE
T ss_pred             ccccccccChHHHHHHhcCCCCCEEEE---------ecCcccHHHHHHHHHhcCCe
Confidence            456667766555544 22221 22455         34556777888888888843

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.05  E-value=0.49  Score=36.85  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=42.6

Q ss_pred             CeeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeE--EeCCCCCchHHHHHHHhc-
Q 024345          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH--YLCAKENEREEELLELVQ-  203 (269)
Q Consensus       128 ~~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~--~~~~~~~~~e~~l~~~l~-  203 (269)
                      |+|||++|.|. |......+..  .+  .+++++|.+..    .....++++++|+|..  .++    +    +-++++ 
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~--~~--~~~i~ai~d~~----~~~~~~~~~~~~~~~~~~~~~----~----~~~ll~~   64 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHL--AP--NATISGVASRS----LEKAKAFATANNYPESTKIHG----S----YESLLED   64 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHHTTCCTTCEEES----S----HHHHHHC
T ss_pred             CeEEEEEcCCHHHHHHHHHHHh--CC--CCEEEEEEeCC----ccccccchhccccccceeecC----c----HHHhhhc
Confidence            57999999997 4333222332  22  37888765543    3456788999999732  221    2    223444 


Q ss_pred             -cCCEEEEEe
Q 024345          204 -NTDFLVLAR  212 (269)
Q Consensus       204 -~~Dlivla~  212 (269)
                       ++|+++++.
T Consensus        65 ~~iD~v~I~t   74 (184)
T d1ydwa1          65 PEIDALYVPL   74 (184)
T ss_dssp             TTCCEEEECC
T ss_pred             cccceeeecc
Confidence             799998876

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.3  Score=37.48  Aligned_cols=67  Identities=15%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             CeeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccC
Q 024345          128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT  205 (269)
Q Consensus       128 ~~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~  205 (269)
                      |+||||+|.|. |. .....+..  .+  ..++++|+...    ...+.++++++|+|++  +    . .++   +++++
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~--~~--~~~i~~v~d~~----~~~~~~~~~~~~~~~~--~----~-~~~---l~~~~   62 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAA--AS--DWTLQGAWSPT----RAKALPICESWRIPYA--D----S-LSS---LAASC   62 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHS--CS--SEEEEEEECSS----CTTHHHHHHHHTCCBC--S----S-HHH---HHTTC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHh--CC--CcEEEEEEech----hHhhhhhhhccccccc--c----c-chh---hhhhc
Confidence            68999999987 32 22333432  12  37888777644    2357888999999854  2    1 122   23578


Q ss_pred             CEEEEEe
Q 024345          206 DFLVLAR  212 (269)
Q Consensus       206 Dlivla~  212 (269)
                      |+++.+.
T Consensus        63 D~V~I~t   69 (164)
T d1tlta1          63 DAVFVHS   69 (164)
T ss_dssp             SEEEECS
T ss_pred             ccccccc
Confidence            9887765

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=88.85  E-value=0.51  Score=36.82  Aligned_cols=70  Identities=26%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             CCeeEEEEEeCCc-hHH-HHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc-
Q 024345          127 PKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (269)
Q Consensus       127 ~~~riav~~Sg~g-~~l-~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~-  203 (269)
                      +|+||++.|.|.. ..+ ...+...  +. .++|++|....    .....++++++|+|..+-+     .+    ++++ 
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~--~~-~~~i~~v~d~~----~~~~~~~~~~~~~~~~~~~-----~~----ell~~   65 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNL--SH-LFEITAVTSRT----RSHAEEFAKMVGNPAVFDS-----YE----ELLES   65 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTT--TT-TEEEEEEECSS----HHHHHHHHHHHSSCEEESC-----HH----HHHHS
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhC--CC-CeEEEEEEecc----Hhhhhhhhccccccceeee-----ee----ccccc
Confidence            4689999999873 221 2222221  21 25788776543    3457788999999866522     22    3444 


Q ss_pred             -cCCEEEEEe
Q 024345          204 -NTDFLVLAR  212 (269)
Q Consensus       204 -~~Dlivla~  212 (269)
                       ++|+++++.
T Consensus        66 ~~id~v~I~t   75 (181)
T d1zh8a1          66 GLVDAVDLTL   75 (181)
T ss_dssp             SCCSEEEECC
T ss_pred             cccceeeccc
Confidence             688887654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=88.62  E-value=0.42  Score=38.85  Aligned_cols=78  Identities=10%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             CCCCCeeEEEEEeCCchHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc
Q 024345          124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (269)
Q Consensus       124 ~~~~~~riav~~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~  203 (269)
                      ..+++.|||++|.|.... ..++..++.-. ..+|++|+...    .....++++++|+|-..+-. .++    +.++++
T Consensus        29 ~~~~~iriaiIG~G~~~~-~~~~~~~~~~~-~~~ivav~d~~----~~~a~~~~~~~~i~~~~~~~-~~d----~~ell~   97 (221)
T d1h6da1          29 PEDRRFGYAIVGLGKYAL-NQILPGFAGCQ-HSRIEALVSGN----AEKAKIVAAEYGVDPRKIYD-YSN----FDKIAK   97 (221)
T ss_dssp             CCCCCEEEEEECCSHHHH-HTHHHHTTTCS-SEEEEEEECSC----HHHHHHHHHHTTCCGGGEEC-SSS----GGGGGG
T ss_pred             CCCCCEEEEEEcCcHHHH-HHHHHHHHhCC-CceEEEEecCC----HHHHHHHHHhhccccccccc-cCc----hhhhcc
Confidence            456778999999986311 11222222211 47888877644    24578999999997322110 111    224455


Q ss_pred             --cCCEEEEEe
Q 024345          204 --NTDFLVLAR  212 (269)
Q Consensus       204 --~~Dlivla~  212 (269)
                        ++|+++.+.
T Consensus        98 ~~~iD~V~I~t  108 (221)
T d1h6da1          98 DPKIDAVYIIL  108 (221)
T ss_dssp             CTTCCEEEECS
T ss_pred             cccceeeeecc
Confidence              688887754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.70  E-value=0.42  Score=36.57  Aligned_cols=64  Identities=19%  Similarity=0.436  Sum_probs=39.8

Q ss_pred             eeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhccCCE
Q 024345          129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF  207 (269)
Q Consensus       129 ~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~~~Dl  207 (269)
                      |||+|.|+|. |+   +|+..+.+.  +.++  .++++   ......++++++|+.+..      +.    .+.++++|+
T Consensus         1 MkIg~IG~G~mG~---al~~~l~~~--~~~i--~v~~r---~~~~~~~l~~~~g~~~~~------~~----~~~~~~~dv   60 (152)
T d2ahra2           1 MKIGIIGVGKMAS---AIIKGLKQT--PHEL--IISGS---SLERSKEIAEQLALPYAM------SH----QDLIDQVDL   60 (152)
T ss_dssp             CEEEEECCSHHHH---HHHHHHTTS--SCEE--EEECS---SHHHHHHHHHHHTCCBCS------SH----HHHHHTCSE
T ss_pred             CEEEEEeccHHHH---HHHHHHHhC--CCeE--EEEcC---hHHhHHhhccccceeeec------hh----hhhhhccce
Confidence            6999999997 43   333333332  3565  46776   345678888999876542      11    233447899


Q ss_pred             EEEEe
Q 024345          208 LVLAR  212 (269)
Q Consensus       208 ivla~  212 (269)
                      |+++=
T Consensus        61 Iilav   65 (152)
T d2ahra2          61 VILGI   65 (152)
T ss_dssp             EEECS
T ss_pred             eeeec
Confidence            88863

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=87.17  E-value=0.74  Score=37.54  Aligned_cols=76  Identities=11%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             CCCCCeeEEEEEeCCch--HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEE-eCCCCCchHHHHHH
Q 024345          124 DIDPKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY-LCAKENEREEELLE  200 (269)
Q Consensus       124 ~~~~~~riav~~Sg~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~-~~~~~~~~e~~l~~  200 (269)
                      ++.+|+|||+.|.|..+  --+.-+.++++-.-.++|++|....    .....++++++|+|... ++    +    +.+
T Consensus        12 ~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~----~~~~~~~~~~~~~~~~~~~~----~----~~~   79 (237)
T d2nvwa1          12 PSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPT----LKSSLQTIEQLQLKHATGFD----S----LES   79 (237)
T ss_dssp             GGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSC----HHHHHHHHHHTTCTTCEEES----C----HHH
T ss_pred             CCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCC----HHHHHHHHHhcccccceeec----c----hhh
Confidence            35677999999998631  1111122222211137888766432    34578889999998432 22    2    223


Q ss_pred             Hhc--cCCEEEEE
Q 024345          201 LVQ--NTDFLVLA  211 (269)
Q Consensus       201 ~l~--~~Dlivla  211 (269)
                      +++  ++|+++.+
T Consensus        80 l~~~~~iD~V~i~   92 (237)
T d2nvwa1          80 FAQYKDIDMIVVS   92 (237)
T ss_dssp             HHHCTTCSEEEEC
T ss_pred             cccccccceeecc
Confidence            444  78888887

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.51  E-value=1.3  Score=35.71  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CCeeEEEEEeCCc--hHHHHHHHhhhcCCCCceEEEEeeCCCCCCCh-----hHHHHHHhCCCCeEEeC
Q 024345          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLC  188 (269)
Q Consensus       127 ~~~riav~~Sg~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~-----~v~~~a~~~gIP~~~~~  188 (269)
                      ++.||+|-.||..  ..|..++..+.......++.++..|+--.+++     .+.++|+++|||++...
T Consensus        12 ~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~   80 (227)
T d1ni5a1          12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER   80 (227)
T ss_dssp             TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcchhhhHHHHHHHHhhccCcceeee
Confidence            4569999999975  45556666554443457888888886321332     48899999999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.19  E-value=0.62  Score=34.38  Aligned_cols=69  Identities=10%  Similarity=0.013  Sum_probs=41.5

Q ss_pred             eeEEEEEeCC-chHHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEEeCCCCCchHHHHHHHhc--cC
Q 024345          129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT  205 (269)
Q Consensus       129 ~riav~~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~e~~l~~~l~--~~  205 (269)
                      |||.|+|.|+ |.++-..|..  .|   .++..|=.|+     ..+.+.+++.|+.+.+-+..    +.++++...  ++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~--~g---~~v~vid~d~-----~~~~~~~~~~~~~vi~Gd~~----~~~~l~~~~i~~a   66 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSE--KG---HDIVLIDIDK-----DICKKASAEIDALVINGDCT----KIKTLEDAGIEDA   66 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TT---CEEEEEESCH-----HHHHHHHHHCSSEEEESCTT----SHHHHHHTTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CC---CCcceecCCh-----hhhhhhhhhhhhhhccCccc----chhhhhhcChhhh
Confidence            7999999987 4555444432  34   4665443333     23556667779888775421    334555554  78


Q ss_pred             CEEEEE
Q 024345          206 DFLVLA  211 (269)
Q Consensus       206 Dlivla  211 (269)
                      |.++.+
T Consensus        67 ~~vv~~   72 (132)
T d1lssa_          67 DMYIAV   72 (132)
T ss_dssp             SEEEEC
T ss_pred             hhhccc
Confidence            887774

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.31  Score=34.76  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             ceEEEEEEcCC---CcChHHHHHHHHHhCCCeEeEeee
Q 024345           41 THGIHVFHCPD---EVGIVAKLSECIASRGGNILAADV   75 (269)
Q Consensus        41 ~~~iItV~G~D---rpGIVa~VS~~La~~giNI~dl~~   75 (269)
                      .-..|++.|.+   +||+.+++.+.|+++|+||.-+++
T Consensus        13 ~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~   50 (91)
T d2j0wa2          13 NQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT   50 (91)
T ss_dssp             EEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE
T ss_pred             CEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEc
Confidence            45678888874   689999999999999999999987

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.44  E-value=0.6  Score=31.04  Aligned_cols=58  Identities=7%  Similarity=-0.007  Sum_probs=38.3

Q ss_pred             EEEEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        43 ~iItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..|+++|.   .+||+.+++.+.|++.++++....+      ....+.+.|+  +     ++..+++..|-++|
T Consensus         2 a~IsvvG~gm~~~~gi~arif~~L~~~nI~~i~~~~------Se~~is~vV~--~-----~d~~~Av~aLh~~F   62 (64)
T d2j0wa3           2 ALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGA------SSHNLCFLVP--G-----EDAEQVVQKLHSNL   62 (64)
T ss_dssp             EEEEEEESSCTTSSSHHHHHHSSCTTSCCCEEEESS------CTTEEEEEEE--G-----GGHHHHHHHHHHHH
T ss_pred             eEEEEECCCcccCccHHHHHHHHHhhCCCeEEEEEc------CccEEEEEEc--H-----HHHHHHHHHHHHHh
Confidence            46899996   8999999999999887777654322      2334445444  2     34555555555544

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.45  E-value=0.51  Score=31.99  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=28.5

Q ss_pred             EEEEcC---CCcChHHHHHHHHHhCCCeEeEeeeec
Q 024345           45 HVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (269)
Q Consensus        45 ItV~G~---DrpGIVa~VS~~La~~giNI~dl~~~~   77 (269)
                      +++.|+   |-+||+++|++.|++.||.+--++++.
T Consensus         5 l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~   40 (66)
T d1zhva2           5 FKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFD   40 (66)
T ss_dssp             EEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSS
T ss_pred             EEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeee
Confidence            455555   999999999999999999999998863

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.17  E-value=0.59  Score=35.42  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             eeEEEEEeCC-ch-HHHHHHHhhhcCCCCceEEEEeeCCCCCCChhHHHHHHhCCCCeEE
Q 024345          129 YKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY  186 (269)
Q Consensus       129 ~riav~~Sg~-g~-~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~~v~~~a~~~gIP~~~  186 (269)
                      |||+|.|.|+ |. -++.|++   .|  +.+|  .++++   ......++++++|+.+..
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~---~~--~~~i--~v~~r---~~~~~~~l~~~~~~~~~~   50 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVK---QG--GYRI--YIANR---GAEKRERLEKELGVETSA   50 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---HC--SCEE--EEECS---SHHHHHHHHHHTCCEEES
T ss_pred             CEEEEEcCcHHHHHHHHHHHH---CC--CCcE--EEEeC---ChhHHHHhhhhccccccc
Confidence            6999999988 43 3455665   34  3455  46676   345567888899986553

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=81.68  E-value=3.1  Score=28.84  Aligned_cols=71  Identities=14%  Similarity=0.027  Sum_probs=51.7

Q ss_pred             CCcceEEEEEEcCCCcChHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHhhhhhh
Q 024345           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (269)
Q Consensus        38 ~~~~~~iItV~G~DrpGIVa~VS~~La~~giNI~dl~~~~~~~~g~F~-m~~~v~~p~~~~~~~~L~e~L~~la~el  113 (269)
                      ..+-.|.+.|+|++.++..++|..++.++..+-...+.. .+.+|.|. ..+.+.+.    +.+++.+-.+++.+.-
T Consensus        10 efPc~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k-~Ss~GkY~Svtv~i~~~----s~eqv~~iY~~l~~~~   81 (87)
T d1rwua_          10 EFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITINAT----HIEQVETLYEELGKID   81 (87)
T ss_dssp             CCCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEE-ESSCSSEEEEEEEECCS----SHHHHHHHHHHHSCSS
T ss_pred             cCCCCcEEEEEEECChhHHHHHHHHHHHhCCCCCcceee-cCCCCcEEEEEEEEEEC----CHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999987765555443 24578886 44544433    5788888777776543