Citrus Sinensis ID: 024353

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27

MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV

cccEEEccccccccccccEEEccccccccccccccccccccHHHHHcccccccccHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHcHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccHHHHHHcccccccccccccc

cccEEEccccEEEEcccEEEEEccEEEccccHHEcccccccHHHEcccccccccEEEEEEEcccccccHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHccHHHHHHHHcccccccccccc

mdgvtmgfgigisghgryriVTEKTllampengiglfpdvgfsyiaakgpgggsvGAYLGMtgkristpsdalfaglgtdyvpsgnlgslKEALLAVTFSEDPHQDIVALLAKyssdpegeaplklllpqitscfssEKSVRQIIEELKKHQSSAETSVAQWADEALqgmgkgapfslcLTQKYFSKVAsahgktdnelsklsgvMKYEYRVALRSSLRSDFAEGVRAVLvdkdqnpkwnpasleevnQSEVEALfeplgtgveelkv

mdgvtmgfgigisghgrYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAsahgktdnelsklsgvMKYEYRVALRSSLRSDFAEGVRAVLvdkdqnpkwnpasleevnqsevealfeplgtgveelkv

****TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY*********LKLLLPQITSCFS*************************WADEALQGMGKGAPFSLCLTQKYFSKVASAHG****ELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV*************************************

MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS********LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGT***ELK*

MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE***********VAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		268	2.2.26 [Sep-21-2011]
Q9T0K7		421	3-hydroxyisobutyryl-CoA h	yes	no	1.0	0.636	0.735	1e-115
Q9LK08		418	3-hydroxyisobutyryl-CoA h	no	no	1.0	0.641	0.716	1e-112
Q5ZJ60		385	3-hydroxyisobutyryl-CoA h	yes	no	0.895	0.623	0.387	8e-39
Q8QZS1		385	3-hydroxyisobutyryl-CoA h	yes	no	0.891	0.620	0.373	2e-37
Q6NVY1		386	3-hydroxyisobutyryl-CoA h	yes	no	0.891	0.619	0.381	3e-37
Q9LKJ1		378	3-hydroxyisobutyryl-CoA h	no	no	0.891	0.632	0.371	2e-36
Q5XIE6		385	3-hydroxyisobutyryl-CoA h	yes	no	0.891	0.620	0.366	5e-36
A2VDC2		385	3-hydroxyisobutyryl-CoA h	N/A	no	0.888	0.618	0.390	5e-35
Q28FR6		385	3-hydroxyisobutyryl-CoA h	yes	no	0.888	0.618	0.387	2e-34
Q6NMB0		378	Probable 3-hydroxyisobuty	no	no	0.888	0.629	0.346	4e-34

>sp\|Q9T0K7\|HIBC6_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2	Back alignment and function desciption

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 230/268 (85%)

Query: 1   MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
           MDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG
Sbjct: 154 MDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLG 213

Query: 61  MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 120
           +TGKRIS PSDALF GLGT YVPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE 
Sbjct: 214 LTGKRISAPSDALFVGLGTHYVPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPES 273

Query: 121 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 180
           EA LK LLP I S FSS KS+++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL L
Sbjct: 274 EAHLKSLLPHIESAFSSNKSIKETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYL 333

Query: 181 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240
           TQKYFS VA A  K +NEL+ L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQNPKWN
Sbjct: 334 TQKYFSNVACAKSKPENELATLNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKWN 393

Query: 241 PASLEEVNQSEVEALFEPLGTGVEELKV 268
           P S+EEV+++EVEALF+PL   VEELKV
Sbjct: 394 PTSIEEVDENEVEALFKPLSPEVEELKV 421

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp\|Q9LK08\|HIBC7_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=At3g24360 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZJ60\|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1	Back alignment and function description

>sp\|Q8QZS1\|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1	Back alignment and function description

>sp\|Q6NVY1\|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2	Back alignment and function description

>sp\|Q9LKJ1\|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1	Back alignment and function description

>sp\|Q5XIE6\|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2	Back alignment and function description

>sp\|A2VDC2\|HIBCH_XENLA 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1	Back alignment and function description

>sp\|Q28FR6\|HIBCH_XENTR 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1	Back alignment and function description

>sp\|Q6NMB0\|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		268
255549046		416	3-hydroxybutyryl-CoA dehydratase, putati	1.0	0.644	0.779	1e-122
359484612		425	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	1.0	0.630	0.776	1e-119
359484614		421	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	1.0	0.636	0.776	1e-119
297738862		407	unnamed protein product [Vitis vinifera]	1.0	0.658	0.776	1e-119
449443139		424	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.966	0.610	0.776	1e-119
224088081		380	predicted protein [Populus trichocarpa]	0.985	0.694	0.765	1e-115
356513119		408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	1.0	0.656	0.757	1e-114
118481519		267	unknown [Populus trichocarpa]	0.985	0.988	0.765	1e-114
356513121		373	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	1.0	0.718	0.757	1e-114
118489716		382	unknown [Populus trichocarpa x Populus d	0.985	0.691	0.761	1e-114

>gi\|255549046\|ref\|XP_002515579.1\| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis] gi\|223545523\|gb\|EEF47028.1\| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/268 (77%), Positives = 242/268 (90%)

Query: 1   MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
           MDG+TMGFG+G+SGHGRYR+VTE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLG
Sbjct: 149 MDGITMGFGLGLSGHGRYRVVTERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLG 208

Query: 61  MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 120
           +TGKRISTPSDALF GLGT +VPSGNLGS+KEAL ++TFS+DP+ DI ALLAKYS++PE 
Sbjct: 209 LTGKRISTPSDALFVGLGTHFVPSGNLGSVKEALFSMTFSQDPNDDIKALLAKYSNEPES 268

Query: 121 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 180
           EA LKLLLPQI S FS+  SV++I EELKKHQ SA+T VA+WA +ALQG+GKGAPFSLCL
Sbjct: 269 EAELKLLLPQIISTFSASNSVKEITEELKKHQQSADTKVAEWASDALQGLGKGAPFSLCL 328

Query: 181 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240
           TQKYFSKVASA+GK ++ELS L+GVMK EYR+ALRSSLR+DFAEGVRAVLVDKDQ PKWN
Sbjct: 329 TQKYFSKVASAYGKPNSELSTLNGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQKPKWN 388

Query: 241 PASLEEVNQSEVEALFEPLGTGVEELKV 268
           P SLE+++Q+EVE+LFEPL   VEELKV
Sbjct: 389 PPSLEDIDQNEVESLFEPLSPEVEELKV 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359484612\|ref\|XP_003633131.1\| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359484614\|ref\|XP_002284721.2\| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297738862\|emb\|CBI28107.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449443139\|ref\|XP_004139338.1\| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus] gi\|449518115\|ref\|XP_004166089.1\| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224088081\|ref\|XP_002308317.1\| predicted protein [Populus trichocarpa] gi\|222854293\|gb\|EEE91840.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356513119\|ref\|XP_003525261.1\| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|118481519\|gb\|ABK92702.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356513121\|ref\|XP_003525262.1\| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|118489716\|gb\|ABK96659.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		268
TAIR\|locus:2142050		421	AT4G13360 [Arabidopsis thalian	1.0	0.636	0.735	2.5e-104
TAIR\|locus:2087218		418	AT3G24360 [Arabidopsis thalian	1.0	0.641	0.716	1.7e-100
TAIR\|locus:2152069		378	CHY1 "beta-hydroxyisobutyryl-C	0.902	0.640	0.364	1.7e-34
TAIR\|locus:2054437		378	AT2G30660 [Arabidopsis thalian	0.902	0.640	0.348	6.7e-33
TAIR\|locus:2054517		378	AT2G30650 [Arabidopsis thalian	0.940	0.666	0.351	1.3e-31
ASPGD\|ASPL0000005013		505	AN6844 [Emericella nidulans (t	0.929	0.493	0.334	5.2e-31
TAIR\|locus:2009180		387	AT1G06550 [Arabidopsis thalian	0.888	0.614	0.316	9.1e-29
FB\|FBgn0038326		386	CG5044 [Drosophila melanogaste	0.619	0.430	0.397	7.3e-27
TAIR\|locus:2116797		409	AT4G31810 [Arabidopsis thalian	0.929	0.608	0.344	7.3e-27
DICTYBASE\|DDB_G0267598		407	DDB_G0267598 "enoyl-CoA hydrat	0.925	0.609	0.298	1.2e-26

TAIR\|locus:2142050 AT4G13360 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 197/268 (73%), Positives = 230/268 (85%)

Query:     1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
             MDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG
Sbjct:   154 MDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLG 213

Query:    61 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 120
             +TGKRIS PSDALF GLGT YVPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE 
Sbjct:   214 LTGKRISAPSDALFVGLGTHYVPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPES 273

Query:   121 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 180
             EA LK LLP I S FSS KS+++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL L
Sbjct:   274 EAHLKSLLPHIESAFSSNKSIKETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYL 333

Query:   181 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240
             TQKYFS VA A  K +NEL+ L+GVMK EYR+ALRS+LR DFAEGVRAVL+DKDQNPKWN
Sbjct:   334 TQKYFSNVACAKSKPENELATLNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKWN 393

Query:   241 PASLEEVNQSEVEALFEPLGTGVEELKV 268
             P S+EEV+++EVEALF+PL   VEELKV
Sbjct:   394 PTSIEEVDENEVEALFKPLSPEVEELKV 421

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2087218 AT3G24360 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000005013 AN6844 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

TAIR\|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0267598 DDB_G0267598 "enoyl-CoA hydratase/isomerase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T0K7	HIBC6_ARATH	3, ., 1, ., 2, ., -	0.7350	1.0	0.6365	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		268
PRK05617		342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-80
PLN02874		379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	7e-47
PLN02988		381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	6e-42
PLN02851		407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-36
pfam13766		117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	5e-36
PLN02157		401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	9e-31
cd06558		195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-13
COG1024		257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	1e-08

>gnl\|CDD\|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	Back alignment and domain information

 Score =  245 bits (629), Expect = 1e-80
 Identities = 103/258 (39%), Positives = 148/258 (57%), Gaps = 22/258 (8%)

Query: 1   MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
           MDG+ MG G+GIS HG +RIVTE+T +AMPE GIG FPDVG +Y  ++ PG   +G YL 
Sbjct: 107 MDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGA--LGTYLA 164

Query: 61  MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 120
           +TG RIS  +DAL+AGL   +VPS +L +L +AL+++ +       + A LA +++    
Sbjct: 165 LTGARIS-AADALYAGLADHFVPSADLPALLDALISLRWDSGA-DVVDAALAAFATPAPA 222

Query: 121 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 180
              L      I  CF+ + +V  II  L+           ++A +    +   +P SL +
Sbjct: 223 S-ELAAQRAWIDECFAGD-TVEDIIAALEADGG-------EFAAKTADTLRSRSPTSLKV 273

Query: 181 TQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240
           T     ++  A G T      L   ++ E R+AL      DF EGVRAVL+DKD+NPKW+
Sbjct: 274 T---LEQLRRARGLT------LEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWS 324

Query: 241 PASLEEVNQSEVEALFEP 258
           PA+LE+V   +VEA F P
Sbjct: 325 PATLEDVTPEDVEAFFAP 342

Length = 342

>gnl\|CDD\|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>gnl\|CDD\|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase	Back alignment and domain information

>gnl\|CDD\|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>gnl\|CDD\|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region	Back alignment and domain information

>gnl\|CDD\|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>gnl\|CDD\|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	Back alignment and domain information

>gnl\|CDD\|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		268
KOG1684		401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PLN02851		407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988		381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02157		401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874		379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617		342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK08252		254	enoyl-CoA hydratase; Provisional	100.0
PLN02600		251	enoyl-CoA hydratase	100.0
PRK06494		259	enoyl-CoA hydratase; Provisional	100.0
PRK09076		258	enoyl-CoA hydratase; Provisional	100.0
PRK07799		263	enoyl-CoA hydratase; Provisional	100.0
PRK05809		260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK07658		257	enoyl-CoA hydratase; Provisional	99.98
PRK05862		257	enoyl-CoA hydratase; Provisional	99.98
PRK08150		255	enoyl-CoA hydratase; Provisional	99.98
PRK09674		255	enoyl-CoA hydratase-isomerase; Provisional	99.98
PLN02664		275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.98
TIGR02280		256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.98
PRK05980		260	enoyl-CoA hydratase; Provisional	99.98
PRK07657		260	enoyl-CoA hydratase; Provisional	99.97
PRK06142		272	enoyl-CoA hydratase; Provisional	99.97
PRK06127		269	enoyl-CoA hydratase; Provisional	99.97
PRK09245		266	enoyl-CoA hydratase; Provisional	99.97
PRK06563		255	enoyl-CoA hydratase; Provisional	99.97
PRK08258		277	enoyl-CoA hydratase; Provisional	99.97
PRK03580		261	carnitinyl-CoA dehydratase; Provisional	99.97
PRK08140		262	enoyl-CoA hydratase; Provisional	99.97
PRK07659		260	enoyl-CoA hydratase; Provisional	99.97
PRK08138		261	enoyl-CoA hydratase; Provisional	99.97
PRK08139		266	enoyl-CoA hydratase; Validated	99.97
PRK05981		266	enoyl-CoA hydratase; Provisional	99.97
TIGR01929		259	menB naphthoate synthase (dihydroxynaphthoic acid	99.97
PRK07511		260	enoyl-CoA hydratase; Provisional	99.97
PRK06210		272	enoyl-CoA hydratase; Provisional	99.97
PRK05995		262	enoyl-CoA hydratase; Provisional	99.97
PRK07468		262	enoyl-CoA hydratase; Provisional	99.97
PRK06688		259	enoyl-CoA hydratase; Provisional	99.97
PRK11423		261	methylmalonyl-CoA decarboxylase; Provisional	99.97
PRK05864		276	enoyl-CoA hydratase; Provisional	99.97
PRK08260		296	enoyl-CoA hydratase; Provisional	99.97
PRK07509		262	enoyl-CoA hydratase; Provisional	99.97
PRK05674		265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.97
PRK07396		273	dihydroxynaphthoic acid synthetase; Validated	99.97
PRK09120		275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.97
PRK06495		257	enoyl-CoA hydratase; Provisional	99.97
TIGR03210		256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	99.97
TIGR03189		251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	99.97
PRK07327		268	enoyl-CoA hydratase; Provisional	99.97
PRK08259		254	enoyl-CoA hydratase; Provisional	99.97
KOG1680		290	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
PRK07854		243	enoyl-CoA hydratase; Provisional	99.96
PRK06143		256	enoyl-CoA hydratase; Provisional	99.96
PRK07260		255	enoyl-CoA hydratase; Provisional	99.96
PRK06072		248	enoyl-CoA hydratase; Provisional	99.96
PLN02921		327	naphthoate synthase	99.96
PRK08321		302	naphthoate synthase; Validated	99.96
PLN02888		265	enoyl-CoA hydratase	99.96
PRK07938		249	enoyl-CoA hydratase; Provisional	99.96
PRK06144		262	enoyl-CoA hydratase; Provisional	99.96
COG1024		257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	99.96
PRK07827		260	enoyl-CoA hydratase; Provisional	99.96
PF00378		245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.96
PRK06023		251	enoyl-CoA hydratase; Provisional	99.96
PRK07112		255	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.96
PLN03214		278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.96
PRK12478		298	enoyl-CoA hydratase; Provisional	99.96
PRK05870		249	enoyl-CoA hydratase; Provisional	99.96
TIGR03222		546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.95
PF13766		118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.95
PRK08184		550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.95
PRK07110		249	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.95
PRK06190		258	enoyl-CoA hydratase; Provisional	99.93
KOG1679		291	consensus Enoyl-CoA hydratase [Lipid transport and	99.93
PRK11730		715	fadB multifunctional fatty acid oxidation complex	99.92
PRK11154		708	fadJ multifunctional fatty acid oxidation complex	99.91
PRK05869		222	enoyl-CoA hydratase; Validated	99.91
PRK08788		287	enoyl-CoA hydratase; Validated	99.9
TIGR02440		699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.9
PRK08290		288	enoyl-CoA hydratase; Provisional	99.9
PRK06213		229	enoyl-CoA hydratase; Provisional	99.89
TIGR02437		714	FadB fatty oxidation complex, alpha subunit FadB.	99.87
TIGR03200		360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	99.87
KOG1681		292	consensus Enoyl-CoA isomerase [Lipid transport and	99.87
PRK08272		302	enoyl-CoA hydratase; Provisional	99.86
KOG1682		287	consensus Enoyl-CoA isomerase [Lipid transport and	99.83
TIGR02441		737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.82
PLN02267		239	enoyl-CoA hydratase/isomerase family protein	99.81
KOG0016		266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	99.78
cd06558		195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.76
COG0447		282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.75
TIGR03222		546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.73
PRK08184		550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.73
cd07020		187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.16
cd07014		177	S49_SppA Signal peptide peptidase A. Signal peptid	98.76
cd07016		160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	98.59
TIGR00705		584	SppA_67K signal peptide peptidase SppA, 67K type.	97.95
cd00394		161	Clp_protease_like Caseinolytic protease (ClpP) is	97.61
cd07021		178	Clp_protease_NfeD_like Nodulation formation effici	97.48
cd07019		211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	97.33
cd07022		214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	96.6
PRK00277		200	clpP ATP-dependent Clp protease proteolytic subuni	96.18
TIGR00706		207	SppA_dom signal peptide peptidase SppA, 36K type.	95.64
PRK12319		256	acetyl-CoA carboxylase subunit alpha; Provisional	95.21
cd07015		172	Clp_protease_NfeD Nodulation formation efficiency	95.01
PLN02157		401	3-hydroxyisobutyryl-CoA hydrolase-like protein	94.94
cd07023		208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	94.7
PRK14512		197	ATP-dependent Clp protease proteolytic subunit; Pr	94.53
cd07013		162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	94.45
PRK12553		207	ATP-dependent Clp protease proteolytic subunit; Re	94.18
CHL00028		200	clpP ATP-dependent Clp protease proteolytic subuni	93.45
PRK14514		221	ATP-dependent Clp protease proteolytic subunit; Pr	93.12
TIGR00493		191	clpP ATP-dependent Clp protease, proteolytic subun	92.98
PRK05724		319	acetyl-CoA carboxylase carboxyltransferase subunit	92.61
TIGR00513		316	accA acetyl-CoA carboxylase, carboxyl transferase,	92.57
PF00574		182	CLP_protease: Clp protease; InterPro: IPR001907 In	92.53
CHL00198		322	accA acetyl-CoA carboxylase carboxyltransferase al	92.47
PLN03229		762	acetyl-coenzyme A carboxylase carboxyl transferase	92.26
PRK14513		201	ATP-dependent Clp protease proteolytic subunit; Pr	92.06
cd07017		171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	91.96
PLN03230		431	acetyl-coenzyme A carboxylase carboxyl transferase	91.5
TIGR03133		274	malonate_beta malonate decarboxylase, beta subunit	91.34
PRK12551		196	ATP-dependent Clp protease proteolytic subunit; Re	89.86
PRK12552		222	ATP-dependent Clp protease-like protein; Reviewed	86.77
PRK07189		301	malonate decarboxylase subunit beta; Reviewed	85.37

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.9e-60  Score=431.70  Aligned_cols=251  Identities=50%  Similarity=0.834  Sum_probs=233.1

Q ss_pred             CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353            1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD   80 (268)
Q Consensus         1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~   80 (268)
                      |||++||||.||+++..||||||++.|+|||+.||||||+|++|+|+|++|  .+|+||+|||.+|+ |.||+..||++|
T Consensus       142 mdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--~lg~YLgLTG~rl~-GaD~~~~GlATH  218 (401)
T KOG1684|consen  142 MDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--YLGLYLGLTGQRLS-GADALRCGLATH  218 (401)
T ss_pred             eeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--HHHHhhhhccceec-chHHHHhcchhh
Confidence            799999999999999999999999999999999999999999999999999  79999999999999 799999999999


Q ss_pred             ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCc-hhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353           81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA-PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV  159 (268)
Q Consensus        81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~-~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~  159 (268)
                      |||++++..++++|. ...++++.+.++++|++|.+.+.+++ .+....++|++||+++ |+|||++.|++-+++  .++
T Consensus       219 yv~S~~l~~Lee~L~-~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~-tVeeIie~lk~~q~~--~~~  294 (401)
T KOG1684|consen  219 YVPSEKLPSLEERLL-KNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSAN-TVEEIIEALKNYQQS--ADG  294 (401)
T ss_pred             ccchhhhhHHHHHHh-hhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccc-cHHHHHHHHHHHhhh--hhH
Confidence            999999999999999 45678888999999999999975544 5667999999999988 999999999776642  345


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353          160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW  239 (268)
Q Consensus       160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w  239 (268)
                      .+||+++++.|.+.||+||++|.++++.+.         ..++++||.+||++..+...++||.|||||.||||+++|+|
T Consensus       295 ~ewak~tlk~L~k~SPtSLkvT~r~i~egs---------~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW  365 (401)
T KOG1684|consen  295 SEWAKETLKTLKKMSPTSLKVTLRQIREGS---------KQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKW  365 (401)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCC
Confidence            899999999999999999999999999987         68999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCHHHHHhhhcCCCCCCCCcCC
Q 024353          240 NPASLEEVNQSEVEALFEPLGTGVEELKV  268 (268)
Q Consensus       240 ~~~~~~~v~~~~v~~~f~p~~~~~~~~~~  268 (268)
                      ++.+++||+.++|+-+|.|++. ++|+|+
T Consensus       366 ~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl  393 (401)
T KOG1684|consen  366 DPASLADVTEDEVDNYFKPLPS-KSELKL  393 (401)
T ss_pred             CCcchhhcCHHHHHHhccCCCC-cccccC
Confidence            9999999999999999999544 777764

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase	Back alignment and domain information

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional	Back alignment and domain information

>PRK08252 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PLN02600 enoyl-CoA hydratase	Back alignment and domain information

>PRK06494 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK09076 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07799 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated	Back alignment and domain information

>PRK07658 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK05862 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK08150 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional	Back alignment and domain information

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase	Back alignment and domain information

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB	Back alignment and domain information

>PRK05980 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07657 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06142 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06127 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK09245 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06563 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK08258 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK03580 carnitinyl-CoA dehydratase; Provisional	Back alignment and domain information

>PRK08140 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07659 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK08138 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK08139 enoyl-CoA hydratase; Validated	Back alignment and domain information

>PRK05981 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)	Back alignment and domain information

>PRK07511 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06210 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK05995 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07468 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06688 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional	Back alignment and domain information

>PRK05864 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK08260 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07509 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated	Back alignment and domain information

>PRK07396 dihydroxynaphthoic acid synthetase; Validated	Back alignment and domain information

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated	Back alignment and domain information

>PRK06495 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase	Back alignment and domain information

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase	Back alignment and domain information

>PRK07327 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK08259 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07854 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06143 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07260 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06072 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PLN02921 naphthoate synthase	Back alignment and domain information

>PRK08321 naphthoate synthase; Validated	Back alignment and domain information

>PLN02888 enoyl-CoA hydratase	Back alignment and domain information

>PRK07938 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06144 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	Back alignment and domain information

>PRK07827 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix	Back alignment and domain information

>PRK06023 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated	Back alignment and domain information

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional	Back alignment and domain information

>PRK12478 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK05870 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase	Back alignment and domain information

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A	Back alignment and domain information

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional	Back alignment and domain information

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated	Back alignment and domain information

>PRK06190 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]	Back alignment and domain information

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK05869 enoyl-CoA hydratase; Validated	Back alignment and domain information

>PRK08788 enoyl-CoA hydratase; Validated	Back alignment and domain information

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ	Back alignment and domain information

>PRK08290 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>PRK06213 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB	Back alignment and domain information

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase	Back alignment and domain information

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08272 enoyl-CoA hydratase; Provisional	Back alignment and domain information

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]	Back alignment and domain information

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial	Back alignment and domain information

>PLN02267 enoyl-CoA hydratase/isomerase family protein	Back alignment and domain information

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]	Back alignment and domain information

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	Back alignment and domain information

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase	Back alignment and domain information

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional	Back alignment and domain information

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease	Back alignment and domain information

>cd07014 S49_SppA Signal peptide peptidase A	Back alignment and domain information

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	Back alignment and domain information

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type	Back alignment and domain information

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease	Back alignment and domain information

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease	Back alignment and domain information

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	Back alignment and domain information

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad	Back alignment and domain information

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed	Back alignment and domain information

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type	Back alignment and domain information

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional	Back alignment and domain information

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease	Back alignment and domain information

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein	Back alignment and domain information

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	Back alignment and domain information

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional	Back alignment and domain information

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	Back alignment and domain information

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed	Back alignment and domain information

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit	Back alignment and domain information

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional	Back alignment and domain information

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP	Back alignment and domain information

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	Back alignment and domain information

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Back alignment and domain information

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional	Back alignment and domain information

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	Back alignment and domain information

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional	Back alignment and domain information

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	Back alignment and domain information

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional	Back alignment and domain information

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit	Back alignment and domain information

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed	Back alignment and domain information

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed	Back alignment and domain information

>PRK07189 malonate decarboxylase subunit beta; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		268
3bpt_A		363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		4e-37
4hdt_A		353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		9e-31
4j2u_A		365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		6e-30
3ju1_A		407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		1e-18

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Back alignment and structure

Iteration: 1

Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 147/265 (55%), Gaps = 26/265 (9%) Query: 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60 + G+T G G+G+S HG++R+ TEK L A PE IGLFPDVG Y + G +G +L Sbjct: 109 IHGITXGGGVGLSVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQG--KLGYFLA 166 Query: 61 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 120 +TG R+ D AG+ T +V S L L+E LLA+ ++I ++L Y ++ + Sbjct: 167 LTGFRLKG-RDVYRAGIATHFVDSEKLAXLEEDLLAL--KSPSKENIASVLENYHTESKI 223 Query: 121 EAPLKLLLPQ----ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPF 176 + +L + I SCFS+ +V +IIE L++ SS +A E L+ + K +P Sbjct: 224 DRDKSFILEEHXDKINSCFSA-NTVEEIIENLQQDGSS-------FALEQLKVINKXSPT 275 Query: 177 SLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQN 236 SL +T + + +S L V+ EYR++ DF EGVRAVL+DKDQ+ Sbjct: 276 SLKITLRQLXEGSS---------KTLQEVLTXEYRLSQACXRGHDFHEGVRAVLIDKDQS 326 Query: 237 PKWNPASLEEVNQSEVEALFEPLGT 261 PKW PA L+EV + ++ F+ LG+ Sbjct: 327 PKWKPADLKEVTEEDLNNHFKSLGS 351

PyMOL of 3bpt

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Back alignment and structure

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Back alignment and structure

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		268
3bpt_A		363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-93
3ju1_A		407	Enoyl-COA hydratase/isomerase family protein; alph	1e-92

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363	Back alignment and structure

 Score =  279 bits (715), Expect = 1e-93
 Identities = 98/270 (36%), Positives = 148/270 (54%), Gaps = 26/270 (9%)

Query: 1   MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
           + G+TMG G+G+S HG++R+ TEK L AMPE  IGLFPDVG  Y   +  G   +G +L 
Sbjct: 109 IHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK--LGYFLA 166

Query: 61  MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-- 118
           +TG R+    D   AG+ T +V S  L  L+E LLA+       ++I ++L  Y ++   
Sbjct: 167 LTGFRLK-GRDVYRAGIATHFVDSEKLAMLEEDLLALKSPS--KENIASVLENYHTESKI 223

Query: 119 --EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPF 176
             +    L+  + +I SCFS+  +V +IIE L++  S        +A E L+ + K +P 
Sbjct: 224 DRDKSFILEEHMDKINSCFSAN-TVEEIIENLQQDGS-------SFALEQLKVINKMSPT 275

Query: 177 SLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQN 236
           SL +T +         G +      L  V+  EYR++       DF EGVRAVL+DKDQ+
Sbjct: 276 SLKITLRQLM-----EGSSKT----LQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQS 326

Query: 237 PKWNPASLEEVNQSEVEALFEPLGTGVEEL 266
           PKW PA L+EV + ++   F+ LG+   + 
Sbjct: 327 PKWKPADLKEVTEEDLNNHFKSLGSSDLKF 356

PyMOL of 3bpt

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		268
4hdt_A		353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3ju1_A		407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A		363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3hrx_A		254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A		258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
4fzw_C		274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3trr_A		256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3gow_A		254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3kqf_A		265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3h81_A		278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3rsi_A		265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3r9t_A		267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qxi_A		265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3moy_A		263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3p5m_A		255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
4f47_A		278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3swx_A		265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3g64_A		279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3tlf_A		274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3pea_A		261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3sll_A		290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3hin_A		275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
1nzy_A		269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
1mj3_A		260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2pbp_A		258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2ej5_A		257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3qxz_A		265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ppy_A		265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
1hzd_A		272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3r9q_A		262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
1dci_A		275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3qre_A		298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3fdu_A		266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3i47_A		268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3myb_A		286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
1ef8_A		261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
2vx2_A		287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
2fbm_A		291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1uiy_A		253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
1wz8_A		264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
2j5i_A		276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3qk8_A		272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2uzf_A		273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
2gtr_A		261	CDY-like, chromodomain Y-like protein; structural	100.0
3oc7_A		267	Enoyl-COA hydratase; seattle structural genomics c	100.0
4eml_A		275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	99.98
3hp0_A		267	Putative polyketide biosynthesis enoyl-COA hydrata	99.98
3lke_A		263	Enoyl-COA hydratase; nysgrc, target 112 structural	99.97
3gkb_A		287	Putative enoyl-COA hydratase; structural genomics,	99.97
3t89_A		289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.97
3t8b_A		334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.97
3he2_A		264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	99.97
3pe8_A		256	Enoyl-COA hydratase; emerald biostructures, struct	99.97
2f6q_A		280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	99.97
3lao_A		258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	99.97
3qmj_A		256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	99.97
3rrv_A		276	Enoyl-COA hydratase/isomerase; structural genomics	99.97
3h0u_A		289	Putative enoyl-COA hydratase; structural genomics,	99.97
1sg4_A		260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	99.97
2a7k_A		250	CARB; crotonase, antibiotic, beta-lactam, biosynth	99.97
2q35_A		243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	99.96
4di1_A		277	Enoyl-COA hydratase ECHA17; structural genomics, s	99.96
3l3s_A		263	Enoyl-COA hydratase/isomerase family protein; crot	99.96
3isa_A		254	Putative enoyl-COA hydratase/isomerase; structural	99.96
3m6n_A		305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	99.96
1pjh_A		280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	99.95
2j5g_A		263	ALR4455 protein; enzyme evolution, C-C bond hydrol	99.93
3ot6_A		232	Enoyl-COA hydratase/isomerase family protein; stru	99.93
3njd_A		333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	99.93
2wtb_A		725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.93
3r6h_A		233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	99.93
2np9_A		440	DPGC; protein inhibitor complex, oxidoreductase; H	99.93
3zwc_A		742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.93
1wdk_A		715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.92
1szo_A		257	6-oxocamphor hydrolase; enzyme-product complex; HE	99.92
3t3w_A		279	Enoyl-COA hydratase; ssgcid, structural genomics,	99.91
2w3p_A		556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	99.82
3bf0_A		593	Protease 4; bacterial, hydrolase, inner membrane,	98.87
3rst_A		240	Signal peptide peptidase SPPA; alpha/beta protein	98.75
3viv_A		230	441AA long hypothetical NFED protein; protein-pept	98.74
1y7o_A		218	ATP-dependent CLP protease proteolytic subunit; hy	98.56
2f9y_A		339	Acetyl-COA carboxylase, carboxyltransferase alpha;	98.5
2f9i_A		327	Acetyl-coenzyme A carboxylase carboxyl transferase	98.48
2f9y_B		304	Acetyl-coenzyme A carboxylase carboxyl transferas	98.09
2cby_A		208	ATP-dependent CLP protease proteolytic subunit 1;	96.34
3qwd_A		203	ATP-dependent CLP protease proteolytic subunit; ca	94.24
2f6i_A		215	ATP-dependent CLP protease, putative; structural g	93.93
1yg6_A		193	ATP-dependent CLP protease proteolytic subunit; en	93.15
2w3p_A		556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	92.65
3p2l_A		201	ATP-dependent CLP protease proteolytic subunit; st	92.05
1pix_A		587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	91.99
1tg6_A		277	Putative ATP-dependent CLP protease proteolytic S;	91.35
3iav_A		530	Propionyl-COA carboxylase complex B subunit; accas	90.46
4gm2_A		205	ATP-dependent CLP protease proteolytic subunit; st	90.29
3n6r_B		531	Propionyl-COA carboxylase, beta subunit; protein c	89.91
2f9i_B		285	Acetyl-coenzyme A carboxylase carboxyl transferase	87.43
3u9r_B		555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	80.63

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}	Back alignment and structure

Probab=100.00  E-value=1.1e-50  Score=378.71  Aligned_cols=234  Identities=39%  Similarity=0.694  Sum_probs=210.6

Q ss_pred             CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353            1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD   80 (268)
Q Consensus         1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~   80 (268)
                      |||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|  .+|++|+|||++++ |+||+++||+++
T Consensus       112 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g--~~a~~l~ltG~~i~-A~eA~~~GLv~~  188 (353)
T 4hdt_A          112 MDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG--KLGLHAALTGAPFS-GADAIVMGFADH  188 (353)
T ss_dssp             ECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST--THHHHHHHHCCCBC-HHHHHHHTSCSE
T ss_pred             eECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh--HHHHHHHhcCCCCC-HHHHHHcCCCcE
Confidence            699999999999999999999999999999999999999999999999999  69999999999999 999999999999


Q ss_pred             ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353           81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA  160 (268)
Q Consensus        81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~  160 (268)
                      +||++++++...++.+        +.++..+..|...+ +...+..+.+.|++||+.. ++++|+.+|++..       .
T Consensus       189 vv~~~~l~~~a~~la~--------~~~~~~l~~~~~~~-~~~~l~~~~~~i~~~f~~~-~~~~i~~~L~~~~-------~  251 (353)
T 4hdt_A          189 YVPHDKIDEFTRAVIA--------DGVDAALAAHAQEP-PASPLAEQRSWIDECYTGD-TVADIIAALRAHD-------A  251 (353)
T ss_dssp             ECCGGGHHHHHHHHHH--------HCHHHHHHHHCBCC-CCCHHHHTHHHHHHHTTCS-SHHHHHHHHHHHC-------S
T ss_pred             EeCHHHHHHHHHHHHH--------hchhHHHHHhcccC-CccchHHHHHHHHHHhCCC-CHHHHHHHHHhcc-------c
Confidence            9999999887776643        34566677776553 3456778889999999998 9999999999876       6


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353          161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  240 (268)
Q Consensus       161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~  240 (268)
                      .|+.++++.|+++||+|++++|++++++.        +..+++++|++|++++.+++.++||+|||+|||++|+|+|+|+
T Consensus       252 ~~a~~~a~~la~~sP~a~~~~k~~l~~~~--------~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~  323 (353)
T 4hdt_A          252 PAAGEAADLIATRSPIALSVTLESVRRAA--------KLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWR  323 (353)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCS
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCC
Confidence            79999999999999999999999999987        2358999999999999999999999999999998766899999


Q ss_pred             CCCcCCCCHHHHHhhhcCCCCC
Q 024353          241 PASLEEVNQSEVEALFEPLGTG  262 (268)
Q Consensus       241 ~~~~~~v~~~~v~~~f~p~~~~  262 (268)
                      +++++||+++.|+++|+|+|++
T Consensus       324 p~~l~~V~~~~v~~~f~p~~~e  345 (353)
T 4hdt_A          324 PATLAEVTEADVEAYFAPVDPE  345 (353)
T ss_dssp             SCSGGGCCHHHHHGGGCCCSSC
T ss_pred             CCChhhCCHHHHHHHcCCCCCC
Confidence            9999999999999999999874

PyMOL of 4hdt

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}	Back alignment and structure

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}	Back alignment and structure

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}	Back alignment and structure

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}	Back alignment and structure

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}	Back alignment and structure

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}	Back alignment and structure

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}	Back alignment and structure

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*	Back alignment and structure

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}	Back alignment and structure

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A	Back alignment and structure

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}	Back alignment and structure

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}	Back alignment and structure

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}	Back alignment and structure

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}	Back alignment and structure

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}	Back alignment and structure

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}	Back alignment and structure

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0	Back alignment and structure

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}	Back alignment and structure

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}	Back alignment and structure

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}	Back alignment and structure

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*	Back alignment and structure

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*	Back alignment and structure

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A	Back alignment and structure

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}	Back alignment and structure

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0	Back alignment and structure

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}	Back alignment and structure

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A	Back alignment and structure

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A	Back alignment and structure

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A	Back alignment and structure

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}	Back alignment and structure

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}	Back alignment and structure

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0	Back alignment and structure

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}	Back alignment and structure

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*	Back alignment and structure

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}	Back alignment and structure

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3	Back alignment and structure

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3	Back alignment and structure

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3	Back alignment and structure

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*	Back alignment and structure

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A	Back alignment and structure

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}	Back alignment and structure

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A	Back alignment and structure

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0	Back alignment and structure

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}	Back alignment and structure

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}	Back alignment and structure

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}	Back alignment and structure

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}	Back alignment and structure

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A	Back alignment and structure

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A	Back alignment and structure

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}	Back alignment and structure

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A	Back alignment and structure

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3	Back alignment and structure

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}	Back alignment and structure

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}	Back alignment and structure

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}	Back alignment and structure

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A	Back alignment and structure

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*	Back alignment and structure

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A	Back alignment and structure

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}	Back alignment and structure

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}	Back alignment and structure

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}	Back alignment and structure

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A	Back alignment and structure

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A	Back alignment and structure

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D	Back alignment and structure

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}	Back alignment and structure

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A	Back alignment and structure

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}	Back alignment and structure

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*	Back alignment and structure

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*	Back alignment and structure

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*	Back alignment and structure

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*	Back alignment and structure

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A	Back alignment and structure

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A	Back alignment and structure

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}	Back alignment and structure

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A	Back alignment and structure

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}	Back alignment and structure

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A	Back alignment and structure

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1	Back alignment and structure

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4	Back alignment and structure

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}	Back alignment and structure

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4	Back alignment and structure

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A	Back alignment and structure

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A	Back alignment and structure

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1	Back alignment and structure

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A	Back alignment and structure

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}	Back alignment and structure

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1	Back alignment and structure

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4	Back alignment and structure

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1	Back alignment and structure

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A	Back alignment and structure

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A	Back alignment and structure

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}	Back alignment and structure

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}	Back alignment and structure

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		268
d1mj3a_		260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-08

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 1   MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
           ++G  +G G  ++         EK     PE  +G  P  G +    +   G S+   + 
Sbjct: 104 VNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMV 162

Query: 61  MTGKRIS 67
           +TG RIS
Sbjct: 163 LTGDRIS 169

PyMOL of d1mj3a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		268
d1hzda_		266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mj3a_		260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1		258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1dcia_		275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.98
d1wz8a1		263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	99.98
d1uiya_		253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.97
d1ef8a_		261	Methylmalonyl CoA decarboxylase {Escherichia coli	99.97
d1nzya_		269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	99.97
d1q52a_		297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.97
d2f6qa1		245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	99.94
d1wdka4		310	Fatty oxidation complex alpha subunit, N-terminal	99.94
d1sg4a1		249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.93
d2a7ka1		230	Carbapenem biosynthes protein CarB {Pectobacterium	99.92
d1pjha_		266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.9
d1szoa_		249	6-oxo camphor hydrolase {Rhodococcus erythropolis	99.86
d2f6ia1		190	Clp protease, ClpP subunit {Plasmodium falciparum	94.99
d2cbya1		179	Clp protease, ClpP subunit {Mycobacterium tubercul	94.7
d1y7oa1		192	Clp protease, ClpP subunit {Streptococcus pneumoni	94.47
d1yg6a1		183	Clp protease, ClpP subunit {Escherichia coli [TaxI	93.75
d1tg6a1		193	Clp protease, ClpP subunit {Human (Homo sapiens),	93.49
d1vrga1		251	Propionyl-CoA carboxylase complex B subunit, PccB	82.48
d1on3a1		253	Methylmalonyl-CoA carboxyltransferase (transcarbox	81.75

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=261.29  Aligned_cols=161  Identities=16%  Similarity=0.199  Sum_probs=149.5

Q ss_pred             CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353            1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD   80 (268)
Q Consensus         1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~   80 (268)
                      |||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+.|. ..+++|++||++++ |++|+++||+++
T Consensus       106 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~-~~a~~l~ltg~~~~-a~eA~~~Glv~~  183 (266)
T d1hzda_         106 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM-SLAKELIFSARVLD-GKEAKAVGLISH  183 (266)
T ss_dssp             ESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH-HHHHHHHHHTCEEE-HHHHHHHTSCSE
T ss_pred             cccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHH-HHHHhhhccCCccC-HHHhhccccccc
Confidence            6999999999999999999999999999999999999999999999999998 89999999999999 999999999999


Q ss_pred             ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353           81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA  160 (268)
Q Consensus        81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~  160 (268)
                      +||++++.+..                                                                    .
T Consensus       184 vv~~~~l~~~~--------------------------------------------------------------------~  195 (266)
T d1hzda_         184 VLEQNQEGDAA--------------------------------------------------------------------Y  195 (266)
T ss_dssp             EECCCTTSCHH--------------------------------------------------------------------H
T ss_pred             ccChhhhhhHH--------------------------------------------------------------------H
Confidence            99998864311                                                                    3


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353          161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN  240 (268)
Q Consensus       161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~  240 (268)
                      ++|.+++++|...||.+++.+|+++++..         ..++.+++..|......++.++|++||++||+ +| |+|+|+
T Consensus       196 ~~a~~~a~~i~~~~p~a~~~~K~~l~~~~---------~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~-eK-R~P~f~  264 (266)
T d1hzda_         196 RKALDLAREFLPQGPVAMRVAKLAINQGM---------EVDLVTGLAIEEACYAQTIPTKDRLEGLLAFK-EK-RPPRYK  264 (266)
T ss_dssp             HHHHHHHHTTTTSCHHHHHHHHHHHHHHH---------TSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHT-TT-SCCCCC
T ss_pred             HHHHHHHHhcccCChHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CC-CCCCCC
Confidence            56677778999999999999999999887         67899999999999999999999999999999 88 899999


Q ss_pred             CC
Q 024353          241 PA  242 (268)
Q Consensus       241 ~~  242 (268)
                      +|
T Consensus       265 Gk  266 (266)
T d1hzda_         265 GE  266 (266)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

PyMOL of d1hzda_

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}	Back information, alignment and structure

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}	Back information, alignment and structure

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}	Back information, alignment and structure

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}	Back information, alignment and structure

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}	Back information, alignment and structure

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}	Back information, alignment and structure