Citrus Sinensis ID: 024390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQELMKRSHLL
Secondary Structure (PSIPRED)
cccccHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHcccEEEEcccccHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
mtplscfratavtaaplsyRLFQLTTSrfygsvaaaeplfdpdnyysyyqaesdsdqhrdslrsvtlpdtegrerrrgvhwafigspraKKHVYAEMLSKLLevprismssivrqdlsprsslHKQIANAvnrgevvseDIIFGLLSKrledgyyrgeigfildglprsRIQAEILDQLAEIDLVVnfkcadnfivtnrggslKEKLEAYAELSKPLEDYYQKQKKLLEFqvgsapveTWQGLLTALHLQHINAAYSSQELMKRSHLL
Flexible Loop (DISEMBL)
MTPLSCFRATAvtaaplsyRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAesdsdqhrdslrsvtlpdtegrerrrgvhwafigsprakkhVYAEMLSKLLevprismssivrqdlsprsSLHKQIAnavnrgevvsedIIFGLLSkrledgyyRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFivtnrggslkeKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAyssqelmkrshll
Low Complexity Region (SEG)
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQELMKRSHLL
Disordered region (IsUnstruct)
****SCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQ***************************GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM**I*************QIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAY************
Disordered Region (DISOPRED)
****SC*RATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDS*********************RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH*********LMKRSHLL
Disordered Region (DISEMBL)
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQA**********LRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQE********
Disordered Region (DISPRO)
**PLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYY**YQA*******RDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQELMKRSHLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q8HSW1	288	Adenylate kinase, chlorop	N/A	no	0.660	0.614	0.372	4e-33
Q9ZUU1	284	Probable adenylate kinase	no	no	0.652	0.616	0.371	2e-31
P73302	185	Adenylate kinase 1 OS=Syn	N/A	no	0.570	0.827	0.341	5e-17
Q8YPJ8	184	Adenylate kinase 1 OS=Nos	yes	no	0.537	0.782	0.331	1e-14
B1VEX6	181	Adenylate kinase OS=Coryn	yes	no	0.529	0.784	0.291	5e-14
Q73NP0	209	Adenylate kinase OS=Trepo	yes	no	0.537	0.688	0.263	9e-14
B2A4G2	214	Adenylate kinase OS=Natra	yes	no	0.615	0.771	0.280	1e-13
O24706	186	Adenylate kinase OS=Synec	yes	no	0.615	0.887	0.287	1e-13
Q31L26	186	Adenylate kinase OS=Synec	yes	no	0.615	0.887	0.287	1e-13
Q110C6	191	Adenylate kinase OS=Trich	yes	no	0.589	0.827	0.266	2e-13

>sp|Q8HSW1|KADC_SOLTU Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 114/228 (50%), Gaps = 51/228 (22%)

Query: 75  RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
           + + V W F+G P   K  YA  LS LL VP I+   +VR +L     L KQ+A  VN+G
Sbjct: 52  KAKTVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQG 111

Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK----- 189
           ++VS++II  LLSKRLE G  +GE GFILDG PR+  QAEIL ++ +IDLVVN K     
Sbjct: 112 KLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEILTEVTDIDLVVNLKLPERV 171

Query: 190 -------------CADNFIVTN-----RGGS----------------------------L 203
                        C  NF V +       G+                            +
Sbjct: 172 LVEKCLGRRICSECGKNFNVASIDVAGENGAPRISMARLNPPFTVCFKLITRADDTEAIV 231

Query: 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251
           KE+L  Y + S+P+ED+Y+ Q KLLEF +     E+W  LL  L+L  
Sbjct: 232 KERLSIYWDKSQPVEDFYRSQGKLLEFDLPGGIPESWPKLLEVLNLDE 279

This small ubiquitous enzyme is essential for maintenance and cell growth.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q9ZUU1|KADC1_ARATH Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 112/226 (49%), Gaps = 51/226 (22%)

Query: 75  RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
           + R V W F+G P   K  YA  LS LL VP I+   +VR++L+    L ++++  VN+G
Sbjct: 48  KDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQG 107

Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK----- 189
           ++VS++II  LLSKRLE G  RGE GFILDG PR+  QAEIL  + +IDLVVN K     
Sbjct: 108 KLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEV 167

Query: 190 -------------CADNFIV--------TNRGG-------------------------SL 203
                        C   F V          R G                          +
Sbjct: 168 LVDKCLGRRTCSQCGKGFNVAHINLKGENGRPGISMDPLLPPHQCMSKLVTRADDTEEVV 227

Query: 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249
           K +L  Y E S+PLE+YY+ + KL+EF +     E+W  LL AL L
Sbjct: 228 KARLRIYNETSQPLEEYYRTKGKLMEFDLPGGIPESWPRLLEALRL 273

This small ubiquitous enzyme is essential for maintenance and cell growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P73302|KAD1_SYNY3 Adenylate kinase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=adk1 PE=3 SV=2

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 17/170 (10%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G+P + K   A  L++ L +P IS   ++RQ ++  + L  Q    +++GE+V + +I
Sbjct: 7   FLGAPGSGKGTQAVGLAETLGIPHISTGDMLRQAIADGTELGNQAKGYMDKGELVPDQLI 66

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVT 197
            GL+ +RL  G+   + G+ILDG PR+  QA  LD+L          V+N K  D  IV 
Sbjct: 67  LGLIEERL--GHKDAKAGWILDGFPRNVNQAIFLDELLVNIGHRTHWVINLKVPDEVIVE 124

Query: 198 N---RG------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238
               RG       +++ +L  Y E + PL  YYQ+Q KL     G+ PVE
Sbjct: 125 RLLARGRADDNETTIRNRLLVYTEQTAPLMAYYQEQGKLYSLD-GNQPVE 173

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q8YPJ8|KAD1_NOSS1 Adenylate kinase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=adk1 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 16/160 (10%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A++L++ L +P IS   I+RQ +  ++ L  +  + V+ GE+V + ++
Sbjct: 6   FLGPPGAGKGTQAQILAEHLHIPHISTGDILRQAMKEQTPLGIKAQSYVDSGELVPDQLV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEI-----DLVVNFKCADNFIVT 197
             L+ +RLE    +   G+ILDG PR   QA  L++L +      + VVN   AD+ +V 
Sbjct: 66  QDLVEERLEQADAKS--GWILDGFPRKVTQAAFLEELLQKTGQGGERVVNLDAADDVVVA 123

Query: 198 ---NRGGS------LKEKLEAYAELSKPLEDYYQKQKKLL 228
              +RG        ++ +LE Y   + PL DYY  ++KLL
Sbjct: 124 RLLSRGRKDDTEEVIRRRLEIYRSDTAPLIDYYSDRQKLL 163

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B1VEX6|KAD_CORU7 Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 16/158 (10%)

Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           +    +G P A K   A++LS  L +P IS   + R ++S  + L KQ    ++ G++V 
Sbjct: 1   MRLVLLGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVP 60

Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADN 193
            ++   ++  RLE+       GF+LDG PR+  QA++L+++      ++D V+N++ +++
Sbjct: 61  TEVTANMVRARLEEADAAN--GFLLDGFPRTIEQADLLEEMLKEKDLKLDAVINYQVSED 118

Query: 194 FIVT---NRG------GSLKEKLEAYAELSKPLEDYYQ 222
            +V    +RG       +++ +L+ Y E + PL DYYQ
Sbjct: 119 VVVERMLSRGRNDDNESTIRTRLQVYREETAPLIDYYQ 156

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) (taxid: 504474)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q73NP0|KAD_TREDE Adenylate kinase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=adk PE=3 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 42/186 (22%)

Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++  F+G P A K   A  +SK  ++P IS   + R  +  ++ L K++   ++ G +VS
Sbjct: 1   MNCIFLGPPGAGKGTLAFEVSKSYKIPHISTGDLFRAAIKEQTDLGKKVKAVIDSGALVS 60

Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTN 198
           +D+   L+ +RLE    +   GFILDG PR+  QA+ L+ + +ID V+NF  +D+ ++  
Sbjct: 61  DDLTIALVKERLERDDTKK--GFILDGFPRTIAQADALEDIVKIDSVINFDISDDEVIKR 118

Query: 199 RGG----------------------------------------SLKEKLEAYAELSKPLE 218
             G                                        +++++LE Y   + PL 
Sbjct: 119 LSGRRVCSSCGQSFHIEFVKPKKEGICDSCSGDLMIRPDDKIEAIQKRLETYRNQTAPLI 178

Query: 219 DYYQKQ 224
           DYY K+
Sbjct: 179 DYYTKK 184

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) (taxid: 243275)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B2A4G2|KAD_NATTJ Adenylate kinase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=adk PE=3 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 49/214 (22%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE LSK L+VP I+   I R+ +S  + L K+  + ++ G++V +D++
Sbjct: 5   LMGPPGAGKGTQAEKLSKELDVPHIATGDIFRKAVSEGTELGKEAKSYMDAGQLVPDDVV 64

Query: 143 FGLLSKRLE--DGYYRGEIGFILDGLPRSRIQAEILDQLAE---------IDLV------ 185
            G++ +RL+  D +     GFILDG PR+  QAE LD++           ID+       
Sbjct: 65  IGIVEERLKKPDCHE----GFILDGFPRTVTQAEALDKVLSDNPLTAAVYIDVSKDELID 120

Query: 186 ------VNFKCADNF-----------IVTNRGGSL-----------KEKLEAYAELSKPL 217
                 +  KC  ++           +     G L           KE+LE Y E ++PL
Sbjct: 121 RLSGRRICRKCGKSYHIKFNPPQVRGVCDEDEGELYQRDDDNEETAKERLEVYLENTQPL 180

Query: 218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251
            +YYQ +  L +     +P E ++ +L A+  + 
Sbjct: 181 VEYYQDRGILKKIDGTKSPEEVFRDILKAVQAKQ 214

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|O24706|KAD_SYNP6 Adenylate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=adk PE=3 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 16/181 (8%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A ++++ L++  IS   ++R  ++ ++ L  +    ++RGE+V + ++
Sbjct: 6   FLGPPGAGKGTQAVVVAEQLQLAHISTGELLRAAVTAQTPLGIEAKGYMDRGELVPDSLV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVT 197
            GL+  RL+        G+ILDG PR+R QAE L+ L      ++D  VN    D  I+ 
Sbjct: 66  LGLVRDRLQQPDTAN--GWILDGFPRNRSQAEALNLLLTEINQQVDRAVNLDVPDPVIIE 123

Query: 198 N---RGGS------LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248
               RG +      ++ +LE Y E + PL D+++ +++LL     S        L++AL 
Sbjct: 124 RMLARGRADDTESVIRRRLEVYREQTAPLIDFFRDRQQLLAIDGNSEVAAVTDRLVSALQ 183

Query: 249 L 249
           +
Sbjct: 184 V 184

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q31L26|KAD_SYNE7 Adenylate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=adk PE=3 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 16/181 (8%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A ++++ L++  IS   ++R  ++ ++ L  +    ++RGE+V + ++
Sbjct: 6   FLGPPGAGKGTQAVVVAEQLQLAHISTGELLRAAVTAQTPLGIEAKGYMDRGELVPDSLV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVT 197
            GL+  RL+        G+ILDG PR+R QAE L+ L      ++D  VN    D  I+ 
Sbjct: 66  LGLVRDRLQQPDTAN--GWILDGFPRNRSQAEALNLLLTEINQQVDRAVNLDVPDPVIIE 123

Query: 198 N---RGGS------LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248
               RG +      ++ +LE Y E + PL D+++ +++LL     S        L++AL 
Sbjct: 124 RMLARGRADDTESVIRRRLEVYREQTAPLIDFFRDRQQLLAIDGNSEVAAVTDRLVSALQ 183

Query: 249 L 249
           +
Sbjct: 184 V 184

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q110C6|KAD_TRIEI Adenylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=adk PE=3 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 97/180 (53%), Gaps = 22/180 (12%)

Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           V   F+G P A K   A +++   +VP IS   I+R +++ RS L  +  + +++G++V 
Sbjct: 2   VKLVFLGPPGAGKGTQASLIADFYKVPHISTGDILRSNVAERSPLGIKAKDYMDKGDLVP 61

Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEID----------LVVNF 188
           + +I  ++ +RLE+     + G+ILDG PR+  QAE   +  E +           V+N 
Sbjct: 62  DQLILDMVKERLENP--NAQNGWILDGFPRTVTQAEEFFKKYESEGEEAKSSSSFHVINL 119

Query: 189 KCADNFIVT---------NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET 239
           +  D+ +V          ++  +++ +L+ Y + ++PL ++YQ +++L+    G+ P+ET
Sbjct: 120 QVPDDVLVARLLSRKREDDQEETIRNRLQVYYQQTQPLIEFYQAREQLIIID-GNNPIET 178

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
255540291	263	adenylate kinase 1 chloroplast, putative	0.936	0.954	0.608	1e-80
224136097	201	predicted protein [Populus trichocarpa]	0.697	0.930	0.747	2e-74
297734390	321	unnamed protein product [Vitis vinifera]	0.902	0.753	0.596	2e-74
225456276	299	PREDICTED: probable adenylate kinase 1,	0.902	0.809	0.536	2e-71
225452140	290	PREDICTED: probable adenylate kinase 1,	0.899	0.831	0.534	2e-70
147856242	299	hypothetical protein VITISV_026010 [Viti	0.843	0.755	0.527	8e-70
255536957	274	adenylate kinase 1 chloroplast, putative	0.921	0.901	0.554	2e-64
224060231	271	predicted protein [Populus trichocarpa]	0.925	0.915	0.535	3e-60
217072076	265	unknown [Medicago truncatula] gi|3885151	0.720	0.728	0.558	6e-60
77999238	283	adenylate kinase family-like protein [So	0.735	0.696	0.527	7e-60

>gi|255540291|ref|XP_002511210.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223550325|gb|EEF51812.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/263 (60%), Positives = 198/263 (75%), Gaps = 12/263 (4%)

Query: 9   ATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLP 68
           A A+   P   RL  LT  R Y +V+AA+P  DPD YY Y  + S++D+        T P
Sbjct: 10  AAAIRVTPPLCRL--LTFCRLYTNVSAAQPQLDPDYYYYYSNSSSNNDK-------CTCP 60

Query: 69  DTEGRER--RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ 126
             E +    +RGV WAFIG P  KK VY E LSKLL+VP ISM+S+VRQ+L+P +SL+KQ
Sbjct: 61  TAETKSSVPKRGVQWAFIGYPLVKKRVYIETLSKLLQVPYISMASLVRQELNPGTSLYKQ 120

Query: 127 IANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVV 186
           IANAVNRG++V EDI+FGLLSKRLEDGYYRGE GFILDG+PRS++QAEILDQL EIDLVV
Sbjct: 121 IANAVNRGQLVPEDIMFGLLSKRLEDGYYRGETGFILDGIPRSQLQAEILDQLTEIDLVV 180

Query: 187 NFKCADNFIVTNR-GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLT 245
           NFKC D+F++ ++  G+ K KL+AY E SKPLEDYY+KQKKLL+F+VG+AP ETWQGL++
Sbjct: 181 NFKCTDDFLIKHQEEGAWKAKLQAYVEQSKPLEDYYRKQKKLLDFEVGTAPGETWQGLVS 240

Query: 246 ALHLQHINAAYSSQELMKRSHLL 268
           ALHLQH+NA Y S+ L     LL
Sbjct: 241 ALHLQHVNALYCSKNLTAGYTLL 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136097|ref|XP_002322239.1| predicted protein [Populus trichocarpa] gi|222869235|gb|EEF06366.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 161/190 (84%), Gaps = 3/190 (1%)

Query: 67  LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ 126
           + DTE     RGV WAFIGSPRAKK VYAE LSKLLEVP ISM+S+ RQ+L+PRSSL+KQ
Sbjct: 1   MDDTENSVPGRGVQWAFIGSPRAKKRVYAETLSKLLEVPCISMASLARQELNPRSSLYKQ 60

Query: 127 IANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVV 186
           IANAVNR  +V EDIIFGLLSKRLEDGYY+GE GFILDG+PRSR+QAEILDQL EIDLVV
Sbjct: 61  IANAVNRRMLVPEDIIFGLLSKRLEDGYYKGETGFILDGIPRSRLQAEILDQLVEIDLVV 120

Query: 187 NFKCADNFIVTNR-GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLT 245
           NF+C D+ +V ++  G  KE++  YAE SKPLEDYYQKQK+LL+FQVGSAP E WQGLL 
Sbjct: 121 NFRCTDDSLVKHQEEGIWKERV--YAEQSKPLEDYYQKQKRLLDFQVGSAPAENWQGLLA 178

Query: 246 ALHLQHINAA 255
           ALHLQHINAA
Sbjct: 179 ALHLQHINAA 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734390|emb|CBI15637.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/260 (59%), Positives = 191/260 (73%), Gaps = 18/260 (6%)

Query: 14  AAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGR 73
           AAPL   L +LT SR +G+ AAA+P F+ D     Y  ES+ +  R S  +  + D+EG 
Sbjct: 61  AAPLLLHLRRLTLSRSFGAAAAAQPQFNVD-----YHPESEYEPLRGS-AAAPMVDSEGS 114

Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
              RGV W FIG+P AKKHVYA  LSKLL+VP IS++S+VRQDL PRSSL++QIANAVN 
Sbjct: 115 APSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAVNN 174

Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADN 193
           G++V E++IFGLLS+RLE GYYRGE GFILDG+PRS  QAEILDQLA IDLVVNFKCAD+
Sbjct: 175 GKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNFKCADD 234

Query: 194 FIV------------TNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQ 241
           F V            T++ G+ K  +  Y E  KPLEDYY+KQKKLL FQVG+AP ETW+
Sbjct: 235 FFVEDRESGISSHFTTSKEGAWKGTVRVYLEQIKPLEDYYRKQKKLLNFQVGNAPGETWK 294

Query: 242 GLLTALHLQHINAAYSSQEL 261
           GLL ALHL+H++A +SSQ+L
Sbjct: 295 GLLAALHLKHVDAKHSSQKL 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456276|ref|XP_002279733.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/289 (53%), Positives = 191/289 (66%), Gaps = 47/289 (16%)

Query: 14  AAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGR 73
           AAPL   L +LT SR +G+ AAA+P F+ D     Y  ES+ +  R S  +  + D+EG 
Sbjct: 10  AAPLLLHLRRLTLSRSFGAAAAAQPQFNVD-----YHPESEYEPLRGS-AAAPMVDSEGS 63

Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
              RGV W FIG+P AKKHVYA  LSKLL+VP IS++S+VRQDL PRSSL++QIANAVN 
Sbjct: 64  APSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAVNN 123

Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADN 193
           G++V E++IFGLLS+RLE GYYRGE GFILDG+PRS  QAEILDQLA IDLVVNFKCAD+
Sbjct: 124 GKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNFKCADD 183

Query: 194 FIV-----------------------------------------TNRGGSLKEKLEAYAE 212
           F V                                         T++ G+ K  +  Y E
Sbjct: 184 FFVEDRESGISSHCNECCSTNNSDSVTLDIPTRPVQAKIAKSVTTSKEGAWKGTVRVYLE 243

Query: 213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQEL 261
             KPLEDYY+KQKKLL FQVG+AP ETW+GLL ALHL+H++A +SSQ+L
Sbjct: 244 QIKPLEDYYRKQKKLLNFQVGNAPGETWKGLLAALHLKHVDAKHSSQKL 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452140|ref|XP_002263142.1| PREDICTED: probable adenylate kinase 1, chloroplastic [Vitis vinifera] gi|296090237|emb|CBI40056.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 185/288 (64%), Gaps = 47/288 (16%)

Query: 13  TAAPLSYRL-FQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTE 71
           T APL  R    +   R YGS AAA+          Y   + + ++  +  R +   D+E
Sbjct: 9   TVAPLFLRRRIGVLPKREYGSAAAAQ--------VDYDYYDYEEEEEVEVYRKLARADSE 60

Query: 72  GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131
           G    RGVHW  IG P AKKHVYAE LS+LL+VP ISM ++VRQ+LSP SSL+KQIANAV
Sbjct: 61  GCVSGRGVHWVIIGEPGAKKHVYAERLSRLLQVPHISMGTLVRQELSPLSSLYKQIANAV 120

Query: 132 NRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA 191
           N+G++V EDIIFGLLSKRLE+GY RGE GFILDG+PR+RIQAEILDQ+A+IDLVVNFKC 
Sbjct: 121 NQGKLVPEDIIFGLLSKRLEEGYCRGETGFILDGIPRTRIQAEILDQIADIDLVVNFKCT 180

Query: 192 DNFIVTN--RGGS------------------------------------LKEKLEAYAEL 213
            + +V N  + GS                                     KEKL  YAE 
Sbjct: 181 GDCLVRNHPQDGSSSHHQEFHRMSNPGSYLNLPHQDDQLNSTTADTILAWKEKLRIYAEQ 240

Query: 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQEL 261
           SKPLEDYY+KQ+KLL+FQV  AP ETWQGLL ALHLQH+NA  SSQ+L
Sbjct: 241 SKPLEDYYKKQQKLLDFQVAGAPGETWQGLLAALHLQHVNAVNSSQKL 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856242|emb|CAN81789.1| hypothetical protein VITISV_026010 [Vitis vinifera]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/273 (52%), Positives = 179/273 (65%), Gaps = 47/273 (17%)

Query: 30  YGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRA 89
           +G+ AAA+P F  D     Y  ES+ +  R S  +  + D+EG    RGV W FIG+P A
Sbjct: 26  FGAAAAAQPQFKVD-----YHPESEYEPLRGS-ATAPMVDSEGSAPSRGVQWVFIGNPGA 79

Query: 90  KKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR 149
           KKHVYA  LSKLL+VP IS++S+VRQDL PRSSL++QIANA+N G++V E++IFGLLS+R
Sbjct: 80  KKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAMNNGKLVPENVIFGLLSER 139

Query: 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV------------- 196
           LE GYYRGE GFILDG+PRS  QAEILDQLA IDLVVNFKCAD+F V             
Sbjct: 140 LEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNFKCADDFFVXDRESGISSHCNE 199

Query: 197 ----------------------------TNRGGSLKEKLEAYAELSKPLEDYYQKQKKLL 228
                                       T++ G+ K  +  Y E   PLEDYY+KQKKLL
Sbjct: 200 CCSTNNSDSVTLDIPTRPVQAKIAKSVTTSKEGAWKGTVRVYLEQIXPLEDYYRKQKKLL 259

Query: 229 EFQVGSAPVETWQGLLTALHLQHINAAYSSQEL 261
            FQVG+AP ETW+GLL ALHL+H++A +SSQ+L
Sbjct: 260 NFQVGNAPGETWKGLLAALHLKHVDAKHSSQKL 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536957|ref|XP_002509545.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223549444|gb|EEF50932.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/267 (55%), Positives = 184/267 (68%), Gaps = 20/267 (7%)

Query: 10  TAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSD-QHRDSLRSVTLP 68
            A T  P    L ++ TSR YGS AA +  +D ++YYS  +AE   D Q R S       
Sbjct: 11  AAATPPPYLSSLRRILTSRAYGSAAAIQ--YDYEDYYS--EAEDGYDHQDRHSRHPEPCL 66

Query: 69  DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128
           D+      RGV W  IG P  KKHVYAE LSKLLEVP ISM +++RQ+L+PRSSL+KQIA
Sbjct: 67  DSVAN-WGRGVQWVLIGDPGVKKHVYAEELSKLLEVPHISMGTLLRQELNPRSSLYKQIA 125

Query: 129 NAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNF 188
           NAVN G++V E++IFGLLSKR E+GY RGE GFILDG+PR+RIQAEILDQ+A+IDL+VNF
Sbjct: 126 NAVNEGKLVPEEVIFGLLSKRFEEGYCRGEKGFILDGIPRTRIQAEILDQIADIDLIVNF 185

Query: 189 KCA-DNFI-------------VTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGS 234
           KC  +N +             VT  G + KEK   YAE  K +EDYY+KQKKL++FQ+ +
Sbjct: 186 KCTEENLVKKDLITVKNSTSSVTGAGTAWKEKFRIYAEQGKAVEDYYRKQKKLIDFQMAA 245

Query: 235 APVETWQGLLTALHLQHINAAYSSQEL 261
           AP ETWQGLL ALHL+H+ A  SSQ+L
Sbjct: 246 APGETWQGLLAALHLKHLGAISSSQKL 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060231|ref|XP_002300097.1| predicted protein [Populus trichocarpa] gi|222847355|gb|EEE84902.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/265 (53%), Positives = 178/265 (67%), Gaps = 17/265 (6%)

Query: 11  AVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDT 70
           A+TAAP   R+ +   SR YGS AA +  +D   YY  Y +E+  D  + +     L   
Sbjct: 8   AITAAPSLRRVIRFPDSRGYGSAAAVQCDYD---YYDDYYSEAVEDYGQLNRLKPNLESV 64

Query: 71  EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130
            G    RGV W  IG P AKKHVYAE LSKLLEVP ISM +++RQ+L+  SS++KQIANA
Sbjct: 65  AGSASGRGVQWVLIGDPGAKKHVYAEKLSKLLEVPHISMGTLLRQELNLNSSVYKQIANA 124

Query: 131 VNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC 190
           VN G++V ED+IFGLLSKRLE+GYYRGE GFILDG+PR+RIQAEILDQ+A+IDLVVNFKC
Sbjct: 125 VNEGKLVPEDVIFGLLSKRLEEGYYRGENGFILDGIPRTRIQAEILDQIADIDLVVNFKC 184

Query: 191 AD--------------NFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAP 236
            +              ++ V + G    EK   YA+  K LE YY+KQ+KLL+FQV    
Sbjct: 185 GEGNVVKKNLISAENSSYSVADAGSVSNEKSRIYAQEGKALEGYYRKQQKLLDFQVAGGS 244

Query: 237 VETWQGLLTALHLQHINAAYSSQEL 261
            ETWQGLL ALHL+H++A  SS +L
Sbjct: 245 GETWQGLLAALHLKHLSAVSSSPKL 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072076|gb|ACJ84398.1| unknown [Medicago truncatula] gi|388515105|gb|AFK45614.1| unknown [Medicago truncatula]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 120/215 (55%), Positives = 150/215 (69%), Gaps = 22/215 (10%)

Query: 69  DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128
           DTEG    RG+ W  IG P AK+HV+AE LSKLLEVP ISM+S++ Q+L+PRSSL++QIA
Sbjct: 49  DTEGSAPERGIQWVMIGEPGAKRHVFAERLSKLLEVPHISMASLLHQELNPRSSLYQQIA 108

Query: 129 NAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNF 188
            A++ G++V E+II  LLSKRLEDGY RGE GFILDG+PR+R+QAEIL+ +A +DLVVNF
Sbjct: 109 GALDHGKIVPEEIILALLSKRLEDGYDRGETGFILDGIPRTRMQAEILNHVAHVDLVVNF 168

Query: 189 KCADNFIVTNRGG----------------------SLKEKLEAYAELSKPLEDYYQKQKK 226
           KC    ++ N+ G                      S  E ++  AE SK LEDYY++QKK
Sbjct: 169 KCPQEELMKNKLGLRKFTSCQEHIFKTSSWTPTKQSQDEYVQKRAEESKMLEDYYREQKK 228

Query: 227 LLEFQVGSAPVETWQGLLTALHLQHINAAYSSQEL 261
           LL F+V     ETWQGLL ALHLQHINA  SSQ+L
Sbjct: 229 LLNFEVAGGQGETWQGLLAALHLQHINALSSSQKL 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999238|gb|ABB16966.1| adenylate kinase family-like protein [Solanum tuberosum]

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 157/233 (67%), Gaps = 36/233 (15%)

Query: 63  RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS 122
           RS  + ++EG   RRGV W  +G P A++HVYA+ LSKLL+VP ISM S+VRQ+L PRSS
Sbjct: 46  RSYVMEESEGSIPRRGVQWVIMGDPMAQRHVYAQWLSKLLDVPHISMGSLVRQELHPRSS 105

Query: 123 LHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEI 182
           L+KQIA+AVN+G++V E++IFGLLSKRLE+GY  GE GFILDG+PRS+IQAEILD+  +I
Sbjct: 106 LYKQIADAVNQGKLVPEEVIFGLLSKRLEEGYCSGESGFILDGIPRSKIQAEILDKTVDI 165

Query: 183 DLVVNFKCADNF-----------------------IVTNR---GGSL----------KEK 206
           DLV+N KCA++                        I T+R   GG            ++ 
Sbjct: 166 DLVLNLKCAEDLVSKKDKSSGLYPPLEFLRRGASGISTSRQPEGGHFRPSSIMDDVSRKN 225

Query: 207 LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYSSQ 259
           L  +AE   PLE+YY+KQ+KLL+FQV   P ETWQGLL ALHLQH NA  S+Q
Sbjct: 226 LHVHAEQVNPLEEYYRKQRKLLDFQVAGGPGETWQGLLAALHLQHRNAVGSTQ 278

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2082329	263	AT3G01820 [Arabidopsis thalian	0.738	0.752	0.48	5e-44
TAIR|locus:2049842	284	ADK "adenosine kinase" [Arabid	0.447	0.422	0.491	1.3e-34
TAIR|locus:2056098	295	AT2G39270 [Arabidopsis thalian	0.447	0.406	0.45	2.1e-34
UNIPROTKB|Q9KTB7	214	adk "Adenylate kinase" [Vibrio	0.432	0.542	0.336	2.5e-16
TIGR_CMR|VC_0986	214	VC_0986 "adenylate kinase" [Vi	0.432	0.542	0.336	2.5e-16
UNIPROTKB|P08166	241	AK2 "Adenylate kinase 2, mitoc	0.477	0.531	0.311	4.2e-13
UNIPROTKB|F8W1A4	232	AK2 "Adenylate kinase 2, mitoc	0.559	0.646	0.285	9.1e-13
MGI|MGI:87978	239	Ak2 "adenylate kinase 2" [Mus	0.522	0.585	0.286	1.2e-12
UNIPROTKB|P54819	239	AK2 "Adenylate kinase 2, mitoc	0.559	0.627	0.285	1.7e-12
WB|WBGene00002879	251	let-754 [Caenorhabditis elegan	0.466	0.498	0.303	1.8e-12

TAIR|locus:2082329 AT3G01820 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 108/225 (48%), Positives = 148/225 (65%)

Query:    28 RFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSP 87
             R +GS AA E  +D D+ Y Y       D  R +   + L D  G +R  GV W  +G+P
Sbjct:    21 RSFGSAAALEFDYDSDDEYLY------GDDRRLAEPRLGL-DGSGPDR--GVQWVLMGAP 71

Query:    88 RAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS 147
              A +HV+AE LSKLLEVP ISM S+VRQ+L+PRSSL+K+IA+AVN  ++V + ++F LLS
Sbjct:    72 GAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVPKSVVFALLS 131

Query:   148 KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------- 200
             KRLE+GY RGE GFIL G+PR+R QAE LDQ+A+IDLVVN KC+++ +V NR        
Sbjct:   132 KRLEEGYARGETGFILHGIPRTRFQAETLDQIAQIDLVVNLKCSEDHLV-NRNETALPQQ 190

Query:   201 ---GSL-------KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSA 235
                GS+         + E+    ++ +E+YY+KQ+KLL+F VG A
Sbjct:   191 EFLGSMLHSPVAINARRESVGVYAQEVEEYYRKQRKLLDFHVGGA 235

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2049842 ADK "adenosine kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 59/120 (49%), Positives = 79/120 (65%)

Query:    77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
             R V W F+G P   K  YA  LS LL VP I+   +VR++L+    L ++++  VN+G++
Sbjct:    50 RNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKL 109

Query:   137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV 196
             VS++II  LLSKRLE G  RGE GFILDG PR+  QAEIL  + +IDLVVN K  +  +V
Sbjct:   110 VSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLV 169

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2056098 AT2G39270 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 54/120 (45%), Positives = 74/120 (61%)

Query:    77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
             R  HW F+G P   K  YA  LS LL VP I+   +VR++LS    L  Q+   VN G++
Sbjct:    63 RNFHWVFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHGKL 122

Query:   137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV 196
             V ++ I  LLSKRL+ G  +GE G+ILDG PR+  QAEIL+ +  IDLV+N K  +  ++
Sbjct:   123 VPDEFIISLLSKRLQAGKDKGESGYILDGFPRTVTQAEILEGVTNIDLVINLKLREEALL 182

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

UNIPROTKB|Q9KTB7 adk "Adenylate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 176 (67.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 40/119 (33%), Positives = 67/119 (56%)

Query:    84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
             +G+P A K   A+ + +   +P+IS   ++R  +   + L KQ    ++ G++VS+DII 
Sbjct:     6 LGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDIIL 65

Query:   144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGG 201
             GL+ +R+       E GF+LDG PR+  QA+ L ++   +D V+ F  AD+ IV    G
Sbjct:    66 GLIKERIAQADC--EKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVERMAG 122

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|VC_0986 VC_0986 "adenylate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 176 (67.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 40/119 (33%), Positives = 67/119 (56%)

Query:    84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
             +G+P A K   A+ + +   +P+IS   ++R  +   + L KQ    ++ G++VS+DII 
Sbjct:     6 LGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDIIL 65

Query:   144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGG 201
             GL+ +R+       E GF+LDG PR+  QA+ L ++   +D V+ F  AD+ IV    G
Sbjct:    66 GLIKERIAQADC--EKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVERMAG 122

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|P08166 AK2 "Adenylate kinase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 42/135 (31%), Positives = 71/135 (52%)

Query:    74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
             E  +GV    +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ 
Sbjct:    13 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA 72

Query:   134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNF 188
             G++VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L E     +D V+ F
Sbjct:    73 GKLVSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF 130

Query:   189 KCADNFIVTNRGGSL 203
                D+ ++    G L
Sbjct:   131 SIPDSLLIRRITGRL 145

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F8W1A4 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
 Identities = 46/161 (28%), Positives = 81/161 (50%)

Query:    66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHK 125
             ++P  E  E  +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K
Sbjct:     4 SVPAAEP-EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGK 62

Query:   126 QIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE---- 181
             ++   ++ G++VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L E    
Sbjct:    63 KLKATMDAGKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMLDDLMEKRKE 120

Query:   182 -IDLVVNFKCADNFIVTNRGGSL---KEKLEAYAELSKPLE 218
              +D V+ F   D+ ++    G L   K     + E + P E
Sbjct:   121 KLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKE 161

GO:0005524 "ATP binding" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0046033 "AMP metabolic process" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0046060 "dATP metabolic process" evidence=IEA

GO:0097066 "response to thyroid hormone stimulus" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

MGI|MGI:87978 Ak2 "adenylate kinase 2" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 43/150 (28%), Positives = 76/150 (50%)

Query:    77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
             +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K++   ++ G++
Sbjct:    14 KGIRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 73

Query:   137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCA 191
             VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L E     +D V+ F   
Sbjct:    74 VSDEMVVELIEKNLETPSCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQ 131

Query:   192 DNFIVTNRGGSL---KEKLEAYAELSKPLE 218
             D+ ++    G L   K     + E + P E
Sbjct:   132 DSLLIRRITGRLIHPKSGRSYHEEFNPPKE 161

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=ISO

GO:0036126 "sperm flagellum" evidence=IDA

GO:0046033 "AMP metabolic process" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046060 "dATP metabolic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0097226 "sperm mitochondrial sheath" evidence=IDA

UNIPROTKB|P54819 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 46/161 (28%), Positives = 81/161 (50%)

Query:    66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHK 125
             ++P  E  E  +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K
Sbjct:     4 SVPAAEP-EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGK 62

Query:   126 QIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE---- 181
             ++   ++ G++VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L E    
Sbjct:    63 KLKATMDAGKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMLDDLMEKRKE 120

Query:   182 -IDLVVNFKCADNFIVTNRGGSL---KEKLEAYAELSKPLE 218
              +D V+ F   D+ ++    G L   K     + E + P E
Sbjct:   121 KLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKE 161

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0046033 "AMP metabolic process" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0046060 "dATP metabolic process" evidence=IEA

GO:0097066 "response to thyroid hormone stimulus" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

WB|WBGene00002879 let-754 [Caenorhabditis elegans (taxid:6239)]

 Score = 158 (60.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 40/132 (30%), Positives = 71/132 (53%)

Query:    77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
             RG+   FIG P + K   A   ++      ++   ++R +++  S   K++   ++ G++
Sbjct:    25 RGIRAIFIGPPGSGKGTQAPAFAQKYFSCHLATGDLLRAEVASGSEFGKELKATMDAGKL 84

Query:   137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCA 191
             VS++++  L+ ++LE    +   GFILDG PR+  QAE LD++ E     +D VV F  A
Sbjct:    85 VSDEVVCKLIEQKLEKPECK--YGFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNIA 142

Query:   192 DNFIVTNRGGSL 203
             D+ +V    G L
Sbjct:   143 DDLLVRRITGRL 154

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691
3rd Layer	2.7.4.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017914001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (264 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026157001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (225 aa)			•						0.491

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	1e-46
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	2e-29
TIGR01351	210	TIGR01351, adk, adenylate kinase	7e-25
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	2e-22
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	1e-20
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	1e-19
pfam00406	186	pfam00406, ADK, Adenylate kinase	3e-17
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	2e-15
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	2e-15
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	1e-14
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	2e-14
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	4e-12
PLN02674	244	PLN02674, PLN02674, adenylate kinase	2e-11
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	1e-10
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	6e-10
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	2e-08
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	4e-08
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-07
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	2e-07
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	2e-07
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	3e-06

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  156 bits (396), Expect = 1e-46
 Identities = 85/229 (37%), Positives = 114/229 (49%), Gaps = 51/229 (22%)

Query: 77  RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
           R V+W F+G P   K  YA  LSKLL VP I+   +VR+++     L  Q+   VN+G++
Sbjct: 28  RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKL 87

Query: 137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK------- 189
           V ++IIF LLSKRLE G   GE GFILDG PR+  QAEIL+ + +IDLVVN K       
Sbjct: 88  VPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLV 147

Query: 190 -----------CADNFIVT---------------------------------NRGGSLKE 205
                      C  NF V                                  +    +K 
Sbjct: 148 EKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKA 207

Query: 206 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINA 254
           +L  Y E S+P+ED+Y+K+ KLLEF++     ETW  LL AL+L   + 
Sbjct: 208 RLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDEDK 256

Length = 261

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  109 bits (274), Expect = 2e-29
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 39/193 (20%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K   AE L+K   +P IS   ++R++++  + L K+    ++ G++V ++I+
Sbjct: 4   LLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIV 63

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIV-- 196
             LL +RL+      + GFILDG PR+  QAE LD+L     + D V+     D  ++  
Sbjct: 64  IKLLKERLKKPD--CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIER 121

Query: 197 -TNRGG-----------------------------SLKEKLEAYAELSKPLEDYYQKQKK 226
              R                               ++K++LE Y E + PL DYY+K+ K
Sbjct: 122 ILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGK 181

Query: 227 LLEFQVGSAPVET 239
           L+E   GS  ++ 
Sbjct: 182 LVEID-GSGDIDE 193

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score = 98.1 bits (245), Expect = 7e-25
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 43/208 (20%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K   A+ +++   +P IS   ++R ++   + L K+    + +GE+V ++I+
Sbjct: 4   LLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIV 63

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIV---T 197
             L+ +RL       E GFILDG PR+  QAE LD L +  ID V+     D  +V   +
Sbjct: 64  NQLVKERLTQNQDN-ENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLS 122

Query: 198 NR--------------------------GGSL-----------KEKLEAYAELSKPLEDY 220
            R                          G  L           K++LE Y E ++PL DY
Sbjct: 123 GRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDY 182

Query: 221 YQKQKKLLEFQVGSAPVETWQGLLTALH 248
           Y+K+  L++        E W+ +L AL 
Sbjct: 183 YKKRGILVQIDGNGPIDEVWKRILEALK 210

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 91.0 bits (226), Expect = 2e-22
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A +L++ L +P IS   I+RQ +  ++ L  +    +++GE+V + ++
Sbjct: 6   FLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCADNFIVT 197
             L+ +RL+        G+ILDG PR   QA  LD+L +      + VVN    D+ +V 
Sbjct: 66  LDLVQERLQQPDAAN--GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVE 123

Query: 198 ---NRG------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238
               RG        ++ +LE Y E + PL DYY+ ++KLL    G+  VE
Sbjct: 124 RLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTID-GNQSVE 172

Length = 184

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 76  RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135
           +  +     G+P   K  +AE+LSK   +  I+M +I+R+++  ++++ K+I   V  G 
Sbjct: 4   KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGN 63

Query: 136 VVSEDIIFGLLSKRLE---DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCAD 192
           +V ++++  ++   +    D  ++   GFILDG PR+  Q + L ++  IDL VN     
Sbjct: 64  LVPDNLVIAIVKDEIAKVTDDCFK---GFILDGFPRNLKQCKELGKITNIDLFVNIYLPR 120

Query: 193 NFIV 196
           N ++
Sbjct: 121 NILI 124

Length = 229

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)

Query: 82  AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141
             +G P A K   A+ L+K L +P +    I+R  ++ R+ L ++I   +++GE+V ++I
Sbjct: 4   LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63

Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD-----QLAEIDLVVNFKCADNFIV 196
           + GL+ +RL++   +   GFILDG PR+  QA  L          +D+V+     +  ++
Sbjct: 64  VNGLVKERLDEADCKA--GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLL 121

Query: 197 ---TNRGG-------SLKEKLEAYAELSKPLEDYYQKQ 224
                R         ++K++L+ Y E + PL +YY   
Sbjct: 122 ERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYSVT 159

Length = 178

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 46/188 (24%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE + +   +P +S   ++R ++   + L K+    +++GE+V ++++
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE----IDLVVNFKCADNFIV-- 196
            GL+ +RLE      + GF+LDG PR+  QAE L+++ E    +D V+ F   D  +V  
Sbjct: 61  IGLVKERLEQN--DCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVER 118

Query: 197 -TNRG-------------------------------------GSLKEKLEAYAELSKPLE 218
            T R                                       ++K++LE Y + ++P+ 
Sbjct: 119 LTGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVI 178

Query: 219 DYYQKQKK 226
           DYY+K+ K
Sbjct: 179 DYYKKKGK 186

Length = 186

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score = 72.4 bits (177), Expect = 2e-15
 Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 20/163 (12%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A++L + L +P+IS   I+R+ +  ++++  +    ++ G++V + ++
Sbjct: 6   FMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVT 197
            G++  R+ +   +   GF+LDG PR+  QA+ LD L       ID  +N +  D  ++ 
Sbjct: 66  IGIIKDRIREADCKN--GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLK 123

Query: 198 NRGG-------------SLKEKLEAYAELSKPLEDYYQKQKKL 227
              G             ++K +L+ Y + + PL D+Y  QKKL
Sbjct: 124 RLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKL 166

Length = 186

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 49/211 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A+ +++   +P IS   ++R  +   + L K+  + ++ GE+V ++I+
Sbjct: 5   LLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIV 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAE----IDLVVNFKCADNFIV- 196
            GL+ +RL     +   GF+LDG PR+  QAE LD+ L E    +D V+     D  +V 
Sbjct: 65  IGLVKERLAQPDCKN--GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVE 122

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             + R                          G  L           +++LE Y + + PL
Sbjct: 123 RLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPL 182

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
            DYY+K+ KL +   G+  ++  +  +L AL
Sbjct: 183 IDYYKKKGKLKKID-GTGSIDEVFADILKAL 212

Length = 215

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G P A K   A+ L +   + ++S   ++R  ++  S L +++   ++RGE+VS++I+  
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCADNFIVT-- 197
           L+ +RL +    G  G I DG PR+  QAE LD++       ID+V+  K  D  ++   
Sbjct: 67  LIEERLPEAEAAG--GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERI 124

Query: 198 -----------NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET 239
                      +       +L+AY   + PL  YY  Q KL E   G   +E 
Sbjct: 125 VKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVD-GMGSIEA 176

Length = 188

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A  L     +  +S   ++R +++  S+L ++    +NRGE+VS+ ++
Sbjct: 7   FLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALV 66

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCADNFIVT 197
             ++  +L+        G++LDG PR+  QAE L+ L E     I+ VV  +  D  ++ 
Sbjct: 67  LAIVESQLKA--LNSG-GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIE 123

Query: 198 ---NRGGS------LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238
               RG +      ++ +LE Y E + PL D+Y+ Q+ LL+       +E
Sbjct: 124 RLLARGRADDNEAVIRNRLEVYREKTAPLIDHYR-QRGLLQSVEAQGSIE 172

Length = 183

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 62.9 bits (153), Expect = 4e-12
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   AE L++ L + ++S   I+R  ++  + L ++    +  G++V +++I
Sbjct: 11  FLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELI 70

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             L+   L        +  I DG PR+  QAE LD+L     A +  VV  +  D  ++ 
Sbjct: 71  LALIRDELAG---MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIR 127

Query: 197 --TNRG----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLL 244
               R            +++ + + Y E ++PL DYY+ +  L        P E +  +L
Sbjct: 128 RIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARIL 187

Query: 245 TALH 248
            AL 
Sbjct: 188 KALG 191

Length = 191

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 47/201 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P + K   + ++     +  ++   ++R  ++ ++ L  +   A+++GE+VS+D++
Sbjct: 36  LIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 95

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFI-- 195
            G++ + ++      + GFILDG PR+ +QA+ LD++     A+ID V+NF   D  +  
Sbjct: 96  VGIIDEAMKKP--SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEE 153

Query: 196 -VTNR-------------------------------------GGSLKEKLEAYAELSKPL 217
            +T R                                        LK +LEA+ + ++P+
Sbjct: 154 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 213

Query: 218 EDYYQKQKKLLEFQVGSAPVE 238
            DYY K+  +        P E
Sbjct: 214 IDYYAKKGVVANLHAEKPPKE 234

Length = 244

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 42/185 (22%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P + K   A++LS  L    IS   + R+++   + L K+I   V  G++V + I 
Sbjct: 5   FLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSIT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNF-------------- 188
             ++  ++     +    FILDG PR+  QA+ LD+      ++NF              
Sbjct: 65  IKIVEDKINT--IKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGR 122

Query: 189 ----KCADNF-IVT---------------------NRGGSLKEKLEAYAELSKPLEDYYQ 222
                C + F I T                     ++  SLK +L+ Y   +KPL ++Y 
Sbjct: 123 RICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYS 182

Query: 223 KQKKL 227
           K  +L
Sbjct: 183 KCNRL 187

Length = 211

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 84  IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
           +G P + K      + +      +S   ++R ++   S   + I + +  G++V  ++  
Sbjct: 5   LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV 64

Query: 144 GLLSKRL-EDGYYRGEIGFILDGLPRSR--IQA--EILDQLAEIDLVVNFKCADNFIV-- 196
            LL   +  DG       F++DG PR+   ++A  +++D       V+ F C +  ++  
Sbjct: 65  KLLKNAIQADGSK----KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 197 -TNRG----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238
              RG           S+K++   Y E + P+ ++Y+ + K+ E       VE
Sbjct: 121 LLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEIN-AEGSVE 172

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 16/157 (10%)

Query: 84  IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
           +G P + K    E + +      +S   ++R++++  S     I N +  G++V  ++  
Sbjct: 49  LGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTV 108

Query: 144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL--AEIDLVVNFKCADNFIVT---- 197
            L+ K +E         F++DG PR+       +++  AE ++V+ F C +  +V     
Sbjct: 109 KLIQKEMESSDNNK---FLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLN 165

Query: 198 -NRG------GSLKEKLEAYAELSKPLEDYYQKQKKL 227
            N+G       ++K++L+ +  L+ P+ DYY K+ KL
Sbjct: 166 RNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKL 202

Length = 234

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 23/182 (12%)

Query: 84  IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
           +G P + K    E + +      +S   ++R +++  S   KQ+   +  G++V  D + 
Sbjct: 9   VGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVL 68

Query: 144 GLLS----KRLEDGYYRGEIGFILDGLPRSRIQAEILD-QLAEIDLVVNFKCADNFIVT- 197
            LL       L         GF++DG PR   Q E  + ++    LV+ F C+++ +V  
Sbjct: 69  DLLKDAMVAALGTSK-----GFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKR 123

Query: 198 --NRGGS----------LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLT 245
              R  +          +K++LE Y + ++P+  YY+ + KL +        + +  + T
Sbjct: 124 LLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCT 183

Query: 246 AL 247
           A+
Sbjct: 184 AI 185

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 26/119 (21%)

Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNF 188
           G +V ++++ G++S R+E        GFILDG PR+  QAE LD L +     +D VV  
Sbjct: 56  GGLVPDEVVVGIISDRIEQPDAAN--GFILDGFPRTVPQAEALDALLKDKQLKLDAVVEL 113

Query: 189 KCADNFI---VTNRGGSLKE----------------KLEAYAELSKPLEDYYQKQKKLL 228
           +  +  +   V  R   ++                 +L +Y   ++PL  YY +++KLL
Sbjct: 114 RVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLL 172

Length = 333

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 96  EMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155
            ++ K  ++  I   +I R+ +   + L K+    ++RG++V +DI   ++ + L+    
Sbjct: 18  ALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQ--- 74

Query: 156 RGEIGFILDGLPRSRIQAEILDQ 178
            G+ G++LDG PR+++QAE L +
Sbjct: 75  DGKNGWLLDGFPRNKVQAEKLWE 97

Length = 223

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G+P + K    E++     +  IS   ++R ++S  + + K+    +N G +V ++I+  
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 145 LLSKRL--EDGYYRGEIGFILDGLPRSRIQAEILDQL 179
           +++ RL  ED     E G++LDG PRS  QA+ L++L
Sbjct: 64  MVTGRLSREDA---KEKGWLLDGYPRSFAQAQSLEKL 97

Length = 505

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 45/157 (28%)

Query: 131 VNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLV----- 185
           ++ GE+V + ++  ++ + L D       GF+LDG PR+  QAE L+ + ++D+V     
Sbjct: 60  MDAGELVPDAVVNEIVEEALSDAD-----GFVLDGYPRNLEQAEYLESITDLDVVLYLDV 114

Query: 186 -------------VNFKCADNFIVT-----------NRGGSL-----------KEKLEAY 210
                        V   C  N+ V              GG L           +E+L+ +
Sbjct: 115 SEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVF 174

Query: 211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
            E ++P+ ++Y+ Q  L+E      P E W  +  A+
Sbjct: 175 EENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAI 211

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PLN02459	261	probable adenylate kinase	100.0
PLN02674	244	adenylate kinase	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	100.0
PLN02200	234	adenylate kinase family protein	100.0
PRK02496	184	adk adenylate kinase; Provisional	100.0
PRK14527	191	adenylate kinase; Provisional	99.98
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.98
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.98
PRK14530	215	adenylate kinase; Provisional	99.97
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.96
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.96
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.96
PLN02842	505	nucleotide kinase	99.96
PRK13974	212	thymidylate kinase; Provisional	99.79
PRK03839	180	putative kinase; Provisional	99.76
PRK13973	213	thymidylate kinase; Provisional	99.73
PRK08356	195	hypothetical protein; Provisional	99.72
PRK01184	184	hypothetical protein; Provisional	99.71
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.68
PRK13949	169	shikimate kinase; Provisional	99.66
PLN02924	220	thymidylate kinase	99.65
PRK06217	183	hypothetical protein; Validated	99.65
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.62
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.62
PRK13975	196	thymidylate kinase; Provisional	99.6
PRK08233	182	hypothetical protein; Provisional	99.59
PRK13948	182	shikimate kinase; Provisional	99.56
PRK00698	205	tmk thymidylate kinase; Validated	99.55
PRK08118	167	topology modulation protein; Reviewed	99.55
PRK13947	171	shikimate kinase; Provisional	99.54
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.54
PRK03731	171	aroL shikimate kinase II; Reviewed	99.54
PHA02530	300	pseT polynucleotide kinase; Provisional	99.53
PRK13946	184	shikimate kinase; Provisional	99.52
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.51
PRK00625	173	shikimate kinase; Provisional	99.5
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.49
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.49
PRK07933	213	thymidylate kinase; Validated	99.47
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.47
PRK00131	175	aroK shikimate kinase; Reviewed	99.46
PRK04182	180	cytidylate kinase; Provisional	99.45
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.45
PRK13976	209	thymidylate kinase; Provisional	99.45
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.44
PRK06762	166	hypothetical protein; Provisional	99.44
PRK05057	172	aroK shikimate kinase I; Reviewed	99.44
PLN02199	303	shikimate kinase	99.43
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.42
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.41
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.41
PRK04040	188	adenylate kinase; Provisional	99.41
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.37
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.36
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.36
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.32
PRK07261	171	topology modulation protein; Provisional	99.31
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.3
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.27
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.27
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.26
PLN02422	232	dephospho-CoA kinase	99.26
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.26
PRK05541	176	adenylylsulfate kinase; Provisional	99.24
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.24
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.24
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.23
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.23
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.23
PRK09825	176	idnK D-gluconate kinase; Provisional	99.22
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.21
PTZ00451	244	dephospho-CoA kinase; Provisional	99.2
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.19
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.18
PRK14738	206	gmk guanylate kinase; Provisional	99.18
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.17
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.16
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.16
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.16
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.15
PRK11545	163	gntK gluconate kinase 1; Provisional	99.14
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.14
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.12
PRK06547	172	hypothetical protein; Provisional	99.12
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.12
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.11
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.11
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.09
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.08
PRK00889	175	adenylylsulfate kinase; Provisional	99.07
PRK00023	225	cmk cytidylate kinase; Provisional	99.06
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.05
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.05
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.04
PRK00300	205	gmk guanylate kinase; Provisional	99.0
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.98
PRK12338	319	hypothetical protein; Provisional	98.97
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.97
PRK05480	209	uridine/cytidine kinase; Provisional	98.94
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.9
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.89
PRK03846	198	adenylylsulfate kinase; Provisional	98.88
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	98.87
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.86
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.83
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.81
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.81
PRK14737	186	gmk guanylate kinase; Provisional	98.8
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.8
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.79
PRK06696	223	uridine kinase; Validated	98.75
PRK07667	193	uridine kinase; Provisional	98.75
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.75
PHA03132	580	thymidine kinase; Provisional	98.7
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.69
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.67
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.65
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.63
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.61
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.6
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.58
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.57
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.57
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.56
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.55
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.54
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.53
COG0645	170	Predicted kinase [General function prediction only	98.5
PTZ00301	210	uridine kinase; Provisional	98.49
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.47
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.45
PLN02165	334	adenylate isopentenyltransferase	98.43
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.4
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.33
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.33
PRK05439	311	pantothenate kinase; Provisional	98.31
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.29
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.28
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.26
PRK07429	327	phosphoribulokinase; Provisional	98.22
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.22
PHA00729	226	NTP-binding motif containing protein	98.2
COG4639	168	Predicted kinase [General function prediction only	98.2
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.19
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.17
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.11
PLN02772	398	guanylate kinase	98.1
PLN02318	656	phosphoribulokinase/uridine kinase	98.05
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.05
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.01
COG1660	286	Predicted P-loop-containing kinase [General functi	98.0
PLN02348	395	phosphoribulokinase	97.93
PRK06761	282	hypothetical protein; Provisional	97.91
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.9
PF00004	132	AAA: ATPase family associated with various cellula	97.88
PRK15453	290	phosphoribulokinase; Provisional	97.85
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.83
PRK09169	2316	hypothetical protein; Validated	97.82
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.8
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.76
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.66
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.62
COG3709	192	Uncharacterized component of phosphonate metabolis	97.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.6
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.6
smart00382	148	AAA ATPases associated with a variety of cellular	97.56
CHL00181	287	cbbX CbbX; Provisional	97.56
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.55
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.55
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.54
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.53
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.52
PLN02840	421	tRNA dimethylallyltransferase	97.49
PRK12377	248	putative replication protein; Provisional	97.45
PF13173	128	AAA_14: AAA domain	97.45
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.44
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.42
PHA03136	378	thymidine kinase; Provisional	97.41
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.4
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.4
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.38
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.37
PLN02748	468	tRNA dimethylallyltransferase	97.37
PF05729	166	NACHT: NACHT domain	97.36
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.36
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.35
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.32
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.32
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.3
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.26
PRK07952	244	DNA replication protein DnaC; Validated	97.23
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.18
PRK08116	268	hypothetical protein; Validated	97.16
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.15
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.14
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.12
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.12
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.11
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.11
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.09
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.08
PRK14974	336	cell division protein FtsY; Provisional	97.02
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.01
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.0
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	96.99
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.99
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.98
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.97
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.97
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.94
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.93
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.92
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.9
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.89
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.89
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.89
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.87
PF13245	76	AAA_19: Part of AAA domain	96.87
PLN02796	347	D-glycerate 3-kinase	96.87
PRK04328	249	hypothetical protein; Provisional	96.86
CHL00195	489	ycf46 Ycf46; Provisional	96.82
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.82
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.82
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.81
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.8
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	96.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.8
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.77
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.77
TIGR00959	428	ffh signal recognition particle protein. This mode	96.75
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.74
PRK09087	226	hypothetical protein; Validated	96.74
PHA02244	383	ATPase-like protein	96.74
PRK06835	329	DNA replication protein DnaC; Validated	96.72
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.72
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.71
PF07726	131	AAA_3: ATPase family associated with various cellu	96.7
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.7
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.68
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.67
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.67
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.65
PRK06067	234	flagellar accessory protein FlaH; Validated	96.64
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	96.62
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.61
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.6
PRK06620	214	hypothetical protein; Validated	96.6
PRK04195	482	replication factor C large subunit; Provisional	96.58
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.58
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.58
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.57
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.57
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.56
COG3911	183	Predicted ATPase [General function prediction only	96.56
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.56
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.56
PRK06526	254	transposase; Provisional	96.55
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.54
PLN03046	460	D-glycerate 3-kinase; Provisional	96.53
PRK13695	174	putative NTPase; Provisional	96.53
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.52
PRK10867	433	signal recognition particle protein; Provisional	96.52
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.52
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.51
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.51
PRK13342	413	recombination factor protein RarA; Reviewed	96.51
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.49
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.49
KOG1533	290	consensus Predicted GTPase [General function predi	96.49
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.47
PRK15455	644	PrkA family serine protein kinase; Provisional	96.43
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.43
PRK06893	229	DNA replication initiation factor; Validated	96.42
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.42
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.42
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.42
PRK09183	259	transposase/IS protein; Provisional	96.39
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.38
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.38
COG1855	604	ATPase (PilT family) [General function prediction	96.37
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.37
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	96.37
CHL00176	638	ftsH cell division protein; Validated	96.37
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.36
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.36
CHL00206	2281	ycf2 Ycf2; Provisional	96.36
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.35
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.35
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.35
PRK10416	318	signal recognition particle-docking protein FtsY;	96.34
PRK08084	235	DNA replication initiation factor; Provisional	96.34
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.33
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.33
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	96.32
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.32
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.31
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.31
PLN03025	319	replication factor C subunit; Provisional	96.3
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.3
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.29
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.28
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.27
PRK04296	190	thymidine kinase; Provisional	96.27
PRK06921	266	hypothetical protein; Provisional	96.25
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.25
PRK08181	269	transposase; Validated	96.25
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.24
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.24
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.23
PRK13768	253	GTPase; Provisional	96.22
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.21
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.21
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.17
PRK12402	337	replication factor C small subunit 2; Reviewed	96.17
PRK09302	509	circadian clock protein KaiC; Reviewed	96.17
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.15
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.15
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.14
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.14
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.14
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.12
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.09
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.09
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.08
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.07
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.07
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.06
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.05
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.04
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.04
COG0714	329	MoxR-like ATPases [General function prediction onl	96.04
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	96.03
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.03
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.01
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.01
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.01
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.01
cd03116	159	MobB Molybdenum is an essential trace element in t	96.0
PHA02624	647	large T antigen; Provisional	96.0
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.99
KOG0736	953	consensus Peroxisome assembly factor 2 containing	95.99
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	95.98
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	95.98
PTZ00035	337	Rad51 protein; Provisional	95.97
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	95.97
PRK13341	725	recombination factor protein RarA/unknown domain f	95.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	95.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.95
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.95
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.93
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	95.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.93
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	95.92
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.92
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.92
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	95.92
PRK10646	153	ADP-binding protein; Provisional	95.9
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.9
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	95.9
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.89
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.88
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.88
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	95.87
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.86
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.86
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.84
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	95.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.82
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	95.82
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	95.81
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.81
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	95.8
PF13479	213	AAA_24: AAA domain	95.8
cd01128	249	rho_factor Transcription termination factor rho is	95.78
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.78
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.78
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	95.78
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.78
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.77
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.77
PRK14086	617	dnaA chromosomal replication initiation protein; P	95.77
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	95.77
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.77
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.77
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	95.76
PHA02544	316	44 clamp loader, small subunit; Provisional	95.76
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.76
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.74
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.74
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	95.74
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.73
PRK09302	509	circadian clock protein KaiC; Reviewed	95.73
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.73
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.73
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	95.72
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.72
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.72
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.71
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.71
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.71
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.71
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.71
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.7
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.7
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.69
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.69
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	95.69
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.69
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.68
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.68
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.68
COG1484	254	DnaC DNA replication protein [DNA replication, rec	95.68
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.67
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.67
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.66
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.66
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.65
PRK13851	344	type IV secretion system protein VirB11; Provision	95.65
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.65
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.64
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.64
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	95.64
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	95.64
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.63
smart00178	184	SAR Sar1p-like members of the Ras-family of small	95.63
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.63
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.62
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.62
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	95.61
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.61
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	95.61
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.61
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	95.61
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.6
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.6
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.6
cd03246	173	ABCC_Protease_Secretion This family represents the	95.6
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.6
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.6
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	95.6
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.59
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.59
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.58
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	95.57
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.57
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.57
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.57
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	95.57
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.56
COG0802	149	Predicted ATPase or kinase [General function predi	95.56
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	95.56
COG4240	300	Predicted kinase [General function prediction only	95.56
PTZ00202	550	tuzin; Provisional	95.55
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	95.55
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.55
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.55
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	95.54
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.54
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.54
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.54
TIGR02236	310	recomb_radA DNA repair and recombination protein R	95.54
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.54
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.53
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.52
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	95.52
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.52
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.51
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	95.51
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.51
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.51
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.51
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.5
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.5
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	95.5
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	95.5
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.49
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.49
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.48
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.48
PRK07940	394	DNA polymerase III subunit delta'; Validated	95.47
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.47
cd03114	148	ArgK-like The function of this protein family is u	95.47
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.47
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.47
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.47
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.46
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.46

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=7.3e-36  Score=247.22  Aligned_cols=174  Identities=22%  Similarity=0.423  Sum_probs=161.8

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      .++..++|+++|+|||||.|+|.+++++||+.|+|+|||+|++... +++.|..|++++.+|.++|.+++..+|++++.+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            3467789999999999999999999999999999999999999988 899999999999999999999999999999987


Q ss_pred             CCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHH
Q 024390          153 GYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPL  217 (268)
Q Consensus       153 ~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l  217 (268)
                      .  ...++|+||||||+..|+..|++..  .++++++|||++|++++|+             .+.+++|++.|.+.+.|+
T Consensus        84 ~--~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv  161 (195)
T KOG3079|consen   84 S--GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV  161 (195)
T ss_pred             c--CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence            5  3446699999999999999999764  6899999999999999998             457899999999999999


Q ss_pred             HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ++||++.++++.||++.++++|+.+|...+..
T Consensus       162 i~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  162 IEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999988763

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=6.2e-36  Score=264.17  Aligned_cols=175  Identities=47%  Similarity=0.784  Sum_probs=162.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|+|||||||+|+.|++.+|+.|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+....
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999874212


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh------------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------------  200 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------------------------------  200 (268)
                      ...|||||||||+..|++.|+....++.||+|+++++++++|+.                                    
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~  187 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP  187 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence            47899999999999999999988889999999999999999862                                    


Q ss_pred             ---------------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          201 ---------------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       201 ---------------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                                     +.+++|++.|++++.|+.+||.+.++++.||++++++|||++|.++|...+
T Consensus       188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~  253 (261)
T PLN02459        188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD  253 (261)
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence                           136899999999999999999999999999999999999999999998765

>PLN02674 adenylate kinase

Probab=100.00  E-value=7.7e-36  Score=262.16  Aligned_cols=168  Identities=27%  Similarity=0.514  Sum_probs=157.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      .++|+|+|+|||||+|+|+.||++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+..  .
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~--~  108 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS--C  108 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC--c
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999998864  3


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------------------------------
Q 024390          158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------------------------------  199 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------------------------------  199 (268)
                      ..|||||||||+..|++.|+..     ..++.||+|++|++++++|+                                 
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L  188 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  188 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence            6899999999999999999865     46999999999999999997                                 


Q ss_pred             -------hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          200 -------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       200 -------~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                             ++.+++|++.|++++.++.+||.+.++++.||+++++++|++.|+.+|
T Consensus       189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                   235789999999999999999999999999999999999999999876

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=1.4e-33  Score=245.04  Aligned_cols=166  Identities=20%  Similarity=0.378  Sum_probs=152.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|+++|++.|+|+++++|+++..++++++.+++++.+|.++|++++..++.+++.+.  . .
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~--~-~   77 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD--G-K   77 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc--C-C
Confidence            479999999999999999999999999999999999999989999999999999999999999999999999875  2 7


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh----------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR----------------------------------  199 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl----------------------------------  199 (268)
                      .|||||||||+..|++.|+..     ..++.||+|++|++++++|+                                  
T Consensus        78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~  157 (223)
T PRK14529         78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE  157 (223)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence            899999999999999998754     46999999999999999996                                  


Q ss_pred             ---------hHHHHHHHHHHHHH---chHHHHHHHh-----CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          200 ---------GGSLKEKLEAYAEL---SKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       200 ---------~~~~~~rl~~y~~~---~~~l~~~y~~-----~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                               ++.+++|++.|+++   ..++.+||.+     .++++.||+++++++|+++|.+.|
T Consensus       158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                     13678999999997   4578999996     678999999999999999999876

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=1.5e-33  Score=256.88  Aligned_cols=171  Identities=25%  Similarity=0.436  Sum_probs=158.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|||||||||+|+.|++.||++|||+||++|.++..+++++..+.+++.+|.++|++++..++.+++.+..  ..
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~--~~   78 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD--AA   78 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc--cc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999998864  36


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------------hHHHHHHHHHHHHHc
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------------GGSLKEKLEAYAELS  214 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------------~~~~~~rl~~y~~~~  214 (268)
                      .||||||||++..|++.|+.+     ..||+||+|+||++++++|+                   ++.+++|+..|++++
T Consensus        79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t  158 (333)
T PRK13808         79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQT  158 (333)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999998764     37999999999999999997                   235788999999999


Q ss_pred             hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      .++.+||.+.+.++.||++.+++||+++|+..|....
T Consensus       159 ~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~  195 (333)
T PRK13808        159 EPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG  195 (333)
T ss_pred             HHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            9999999988889999999999999999999998654

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=4.3e-33  Score=235.61  Aligned_cols=167  Identities=26%  Similarity=0.435  Sum_probs=154.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      .++|+|+|+|||||||+|+.|++++|++|||+|+++|+++..+++++..+++++.+|+.+|++++..++.+++.+.   .
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~   78 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N   78 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence            4579999999999999999999999999999999999999889999999999999999999999999999998763   3


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390          158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------GGSLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------~~~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      ..||||||||++..|++.|+..     ..++.+|+|+||++++.+|+         ++.+++|++.|++.+.|+.+||.+
T Consensus        79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~  158 (183)
T PRK14531         79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQ  158 (183)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999988764     36789999999999999998         356889999999999999999998


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                      .+.++.||+++++++|+++|.+.|
T Consensus       159 ~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        159 RGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHh
Confidence            889999999999999999999876

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=6.6e-33  Score=239.63  Aligned_cols=170  Identities=26%  Similarity=0.438  Sum_probs=157.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|++.+++.|+|+|+++|+++..+++.++.+++++.+|.++|++++.+++.+++....  ..
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~   78 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NN   78 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--cc
Confidence            4689999999999999999999999999999999999999899999999999999999999999999999998763  46


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh---------------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR---------------------------------------  199 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl---------------------------------------  199 (268)
                      .|||||||||+..|++.|++......+|+|++|++++++|+                                       
T Consensus        79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD  158 (211)
T PRK14526         79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD  158 (211)
T ss_pred             CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence            89999999999999999988655457889999999999996                                       


Q ss_pred             -hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          200 -GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       200 -~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       ++.+++|++.|++++.|+.+||.+.++++.||+++++++|+++|.++|..+
T Consensus       159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~  210 (211)
T PRK14526        159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK  210 (211)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence             346789999999999999999999899999999999999999999999764

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=9.8e-33  Score=234.25  Aligned_cols=166  Identities=27%  Similarity=0.499  Sum_probs=154.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      ++|+|+|+|||||||+|+.|++++|++|+++++++|.++..++++|..++.++..|+++|++++..++.+++.+..  ..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~--~~   79 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREAD--CK   79 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcC--cc
Confidence            5799999999999999999999999999999999999999899999999999999999999999999999998763  36


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHH
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDY  220 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~  220 (268)
                      .||||||||++..|++.|++.     ..+|.+|+|+||++++++|+             ++.+++|++.|++++.|+.++
T Consensus        80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~  159 (186)
T PRK14528         80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDF  159 (186)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence            799999999999999998764     36999999999999999998             467899999999999999999


Q ss_pred             HHhCCcEEEEeCCCCHHHHHHHHHHH
Q 024390          221 YQKQKKLLEFQVGSAPVETWQGLLTA  246 (268)
Q Consensus       221 y~~~~~l~~Ida~~s~eev~~~I~~~  246 (268)
                      |+++++++.||+++++++|++.|...
T Consensus       160 y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        160 YAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            99999999999999999999998864

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=1.3e-32  Score=237.35  Aligned_cols=167  Identities=32%  Similarity=0.566  Sum_probs=154.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~  159 (268)
                      +|+|+|+|||||||+|+.|++++|++|||+++++|+++..+++++..+++++.+|..+|++++.+++.+++.+... ...
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence            4899999999999999999999999999999999999988899999999999999999999999999999987432 367


Q ss_pred             EEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh--------------------------------------
Q 024390          160 GFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR--------------------------------------  199 (268)
Q Consensus       160 g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl--------------------------------------  199 (268)
                      ||||||||++..|++.|++..  .++.+|+|++|++++++|+                                      
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d  159 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED  159 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence            999999999999999998764  5999999999999999886                                      


Q ss_pred             --hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          200 --GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       200 --~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                        ++.+++|++.|++++.++.+||.+.++++.||+++++++|++.|.++|
T Consensus       160 D~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       160 DTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence              134789999999999999999999889999999999999999999886

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=1.6e-32  Score=232.41  Aligned_cols=168  Identities=29%  Similarity=0.458  Sum_probs=154.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.||+++|+.|||+|+++|+++..+++.+..+++++..|+.+|++++.+++.+++....  .+
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~   78 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AA   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--cc
Confidence            4699999999999999999999999999999999999988889999999999999999999999999999997653  47


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHH
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDY  220 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~  220 (268)
                      .|||+||||++..|++.+++.     ..||++|+|++|++++.+|+             ++.+.+|+..|.++..++.++
T Consensus        79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~  158 (188)
T PRK14532         79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPY  158 (188)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999988653     46899999999999999997             235789999999999999999


Q ss_pred             HHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          221 YQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       221 y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      |.+.+.++.||+++++++|+++|.+.|.
T Consensus       159 y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        159 YAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            9988889999999999999999999885

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=1e-31  Score=234.81  Aligned_cols=170  Identities=23%  Similarity=0.452  Sum_probs=154.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      .+++|+|+|+|||||||+|+.||++||++|||+|+++|+++..++++|..+++++.+|.++|++++.+++.+++.+....
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            45789999999999999999999999999999999999999888899999999999999999999999999999872112


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh-------------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-------------------------------------  199 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl-------------------------------------  199 (268)
                      ...|||||||||+..|++.|++...++++|+|+++++++++|+                                     
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~  164 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC  164 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence            4689999999999999999988788999999999999998874                                     


Q ss_pred             -------------hHHHHHHHHHHHHHchHHHHHHHhCCc-EEEE---eCCCCHHHHHHHHHHH
Q 024390          200 -------------GGSLKEKLEAYAELSKPLEDYYQKQKK-LLEF---QVGSAPVETWQGLLTA  246 (268)
Q Consensus       200 -------------~~~~~~rl~~y~~~~~~l~~~y~~~~~-l~~I---da~~s~eev~~~I~~~  246 (268)
                                   ++.+++|++.|++++.++.+||.+.++ ++.|   |+++++++|++.|.+.
T Consensus       165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence                         225789999999999999999999998 9888   7999999999998864

>PRK00279 adk adenylate kinase; Reviewed

Probab=100.00  E-value=1.4e-31  Score=231.73  Aligned_cols=169  Identities=30%  Similarity=0.536  Sum_probs=154.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.||++||+.|+|+++++|+++..+++.+..+++++.+|+.+|++++..++.+++.+..  ..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~--~~   78 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPD--CK   78 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccC--cc
Confidence            4799999999999999999999999999999999999998889999999999999999999999999999998763  34


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------------------------------  200 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~---------------------------------  200 (268)
                      .||||||||++..|++.|++.     ..++.+|+|+||++++++|+.                                 
T Consensus        79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~  158 (215)
T PRK00279         79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI  158 (215)
T ss_pred             CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence            599999999999999999654     368899999999999999972                                 


Q ss_pred             -------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          201 -------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       201 -------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                             +.+++|+..|++++.++.+||.+.+.++.||+++++++|+++|.+.|..
T Consensus       159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence                   2578999999999999999999888999999999999999999998863

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=3e-31  Score=232.76  Aligned_cols=172  Identities=21%  Similarity=0.412  Sum_probs=157.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      .+++|+|+|+|||||||+|+.|++++|+.||++++++|+++...++.+..+.+.+..|+.+|++++..++.+++...   
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~---  118 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS---  118 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---
Confidence            45789999999999999999999999999999999999999888889999999999999999999999999998764   


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh--cCCCeEEEEecCHHHHHhhh-----------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL--AEIDLVVNFKCADNFIVTNR-----------GGSLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~--~~~d~vV~Ld~~~e~l~~Rl-----------~~~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      .+.||||||||++..|+..|++.  ..||.+|+|+++++++.+|+           ++.+++|++.|++...++.++|++
T Consensus       119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~  198 (234)
T PLN02200        119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSK  198 (234)
T ss_pred             CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35789999999999999988765  36999999999999999998           245789999999999999999998


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      .+.++.||+++++++|++.|++.+....
T Consensus       199 ~~~~~~IDa~~~~eeV~~~v~~~l~~~~  226 (234)
T PLN02200        199 KGKLYTINAVGTVDEIFEQVRPIFAACE  226 (234)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            8889999999999999999999988653

>PRK02496 adk adenylate kinase; Provisional

Probab=100.00  E-value=4.3e-31  Score=223.12  Aligned_cols=169  Identities=31%  Similarity=0.524  Sum_probs=154.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      +++|+|.|+|||||||+|+.|++++|++|+++|+++++.+..+++++..++..+.+|+.+|++++..++.+++.+..  .
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~--~   78 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPD--A   78 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--c
Confidence            36799999999999999999999999999999999999998889999999999999999999999999999998653  3


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390          158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------GGSLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------~~~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      ..|||+||||++..|++.++..     ..++.+|+|++|++++.+|+         ++.+++|++.|+++..++.++|++
T Consensus        79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~  158 (184)
T PRK02496         79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD  158 (184)
T ss_pred             cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5799999999999999888753     36899999999999999997         356789999999999999999998


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .+.++.||+++++++|+++|.+.|.
T Consensus       159 ~~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        159 RQKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhC
Confidence            8889999999999999999998774

>PRK14527 adenylate kinase; Provisional

Probab=99.98  E-value=7.6e-31  Score=223.15  Aligned_cols=168  Identities=27%  Similarity=0.468  Sum_probs=154.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      +++.|+|+|+|||||||+|+.|++++|+.|+++|++++++...+++++..+++.+.+|..+|++++..++.+++.+..  
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~--   82 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME--   82 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--
Confidence            567899999999999999999999999999999999999988888999999999999999999999999999998752  


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLE  218 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~  218 (268)
                       ..+||+||||++..|++.++..     ..+++||+|+||++++++|+             ++.+++|++.|.++..++.
T Consensus        83 -~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~  161 (191)
T PRK14527         83 -PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV  161 (191)
T ss_pred             -CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence             3579999999999999888754     35788999999999999998             3567899999999999999


Q ss_pred             HHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          219 DYYQKQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       219 ~~y~~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                      +||.+.+.++.||+++++++|+++|+..|
T Consensus       162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        162 DYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            99999899999999999999999999876

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.98  E-value=8e-31  Score=220.71  Aligned_cols=165  Identities=19%  Similarity=0.410  Sum_probs=150.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~  159 (268)
                      .|+|+|+|||||||+|+.|++++|++|||++|++|+++..+++.++.+++++.+|..+|++++..++.+++...   .+.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~   77 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK   77 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence            38999999999999999999999999999999999998878889999999999999999999999999988764   268


Q ss_pred             EEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHHH
Q 024390          160 GFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       160 g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y~  222 (268)
                      +|||||||++..|++.+++.    ..||++|+|++|++++++|+             .+.+++|+..|.+...++.++|.
T Consensus        78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~  157 (183)
T TIGR01359        78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYE  157 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887654    47999999999999999997             24578899999999999999999


Q ss_pred             hCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          223 KQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       223 ~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                      +.+.++.||+++++++|+++|.+.|
T Consensus       158 ~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       158 NKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHh
Confidence            8888999999999999999999876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.98  E-value=1.8e-31  Score=218.68  Aligned_cols=142  Identities=35%  Similarity=0.607  Sum_probs=128.3

Q ss_pred             EEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccEEE
Q 024390           83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFI  162 (268)
Q Consensus        83 I~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g~I  162 (268)
                      |+|||||||||+|+.||++||++|||+++++|+++...+++|+.+++++.+|+.+|++++.+++..++.+.  ....|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999987  3579999


Q ss_pred             EcCCcCCHHHHHHHHh-----hcCCCeEEEEecCHHHHHhhh----hHHHHHHHHHHHHHchHHHHHHHhCCc
Q 024390          163 LDGLPRSRIQAEILDQ-----LAEIDLVVNFKCADNFIVTNR----GGSLKEKLEAYAELSKPLEDYYQKQKK  226 (268)
Q Consensus       163 lDGfPr~~~qa~~l~~-----~~~~d~vV~Ld~~~e~l~~Rl----~~~~~~rl~~y~~~~~~l~~~y~~~~~  226 (268)
                      |||||++..|++.|++     ...|+.||+|+|+++++.+|+    ++.+++|++.|++++.++.+||+++++
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~  151 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQDNEEVIKKRLEEYRENTEPILDYYKEQGK  151 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999987     368999999999999999998    568999999999999999999998763

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14530 adenylate kinase; Provisional

Probab=99.97  E-value=3.6e-30  Score=222.93  Aligned_cols=168  Identities=23%  Similarity=0.439  Sum_probs=149.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-----CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-----SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-----~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~  151 (268)
                      ++++|+|+|+|||||||+|+.|++++|++||++|++++++.     ......+. +++.+..|..+|+++...++.+++.
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999986     22344554 6778899999999999999988876


Q ss_pred             cCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh--------------------------------
Q 024390          152 DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR--------------------------------  199 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl--------------------------------  199 (268)
                      +     ..|||+||||++..|++.|+....++++|+|++|.+++++|+                                
T Consensus        81 ~-----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~r  155 (215)
T PRK14530         81 D-----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGE  155 (215)
T ss_pred             c-----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCc
Confidence            4     358999999999999999988778999999999999999986                                


Q ss_pred             --------hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          200 --------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       200 --------~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                              ++.+++|+..|++++.++.+||.+.+.++.|||++++++|++.|.+.|...
T Consensus       156 l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~  214 (215)
T PRK14530        156 LIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA  214 (215)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence                    235899999999999999999998888999999999999999999998753

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.97  E-value=2.8e-29  Score=211.51  Aligned_cols=162  Identities=30%  Similarity=0.589  Sum_probs=150.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|+++++++|+|+++++|......+++++.++.++..|+++|+++...++..++....|  .
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~--~   78 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC--K   78 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999998744  3


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh----------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR----------GGSLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl----------~~~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      .+||+|||||+..|++.+++.     ...|.++.++++.+.+++|+          ++.+++|+..|+++..|+.+||+ 
T Consensus        79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~-  157 (178)
T COG0563          79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYS-  157 (178)
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence            399999999999999999865     47899999999999999998          34568999999999999999997 


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                          +.||+.++++++++.+.+.+
T Consensus       158 ----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         158 ----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ----eeccCCCCHHHHHHHHHHhh
Confidence                78999999999999998875

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.96  E-value=9.8e-28  Score=202.05  Aligned_cols=170  Identities=22%  Similarity=0.414  Sum_probs=151.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      .++|+|+|+|||||||+|+.|++.+|+.++++|+++++.....++.++.++..+.+|..+|.+.+...+.+++.... ..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~   81 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-GT   81 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-Cc
Confidence            46799999999999999999999999999999999999877777888899999999999999998898888876542 35


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390          158 EIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      +.+||+||||++..|++.+... ..|+++|+|++|.+++.+|+             ++.+.+|+..|.++..++.++|..
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~  161 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET  161 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            7899999999999999988653 57999999999999999998             235789999999999999999987


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .+.++.||++.++++++++|...|.
T Consensus       162 ~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       162 KGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHh
Confidence            7888999999999999999999886

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.96  E-value=2.4e-28  Score=206.89  Aligned_cols=158  Identities=33%  Similarity=0.554  Sum_probs=144.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~  159 (268)
                      +|+|+|+|||||||+|+.|++++|+.|+++++++++.....++.+..+++++.+|..+|++++..++..++....  ...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~   78 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK   78 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence            489999999999999999999999999999999999988888899999999999999999999999999998752  468


Q ss_pred             EEEEcCCcCCHHHHHHHHhhc----CCCeEEEEecCHHHHHhhhh--------------------------------HHH
Q 024390          160 GFILDGLPRSRIQAEILDQLA----EIDLVVNFKCADNFIVTNRG--------------------------------GSL  203 (268)
Q Consensus       160 g~IlDGfPr~~~qa~~l~~~~----~~d~vV~Ld~~~e~l~~Rl~--------------------------------~~~  203 (268)
                      +||+||||++..|++.|++..    .++++|+|++|++++.+|+.                                +.+
T Consensus        79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i  158 (194)
T cd01428          79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI  158 (194)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence            899999999999999998753    78999999999999999971                                257


Q ss_pred             HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHH
Q 024390          204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET  239 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev  239 (268)
                      ++|+..|++++.++.+||.+.+.++.||+++++++|
T Consensus       159 ~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         159 KKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            899999999999999999998999999999998864

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.96  E-value=4.3e-28  Score=209.66  Aligned_cols=172  Identities=35%  Similarity=0.599  Sum_probs=159.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.+++++|+||+||+|+|.+|++.|++.|+++||++|+.+.+++++|.++++++..|+++|+++++.++..++...  .
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence            67899999999999999999999999999999999999999999999999999999999999999999888888887  3


Q ss_pred             CccEEEEcCCcCCHHHHHHHHh-hcCCCeEEEEecCHHHHHhhh------------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNR------------------------------------  199 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~-~~~~d~vV~Ld~~~e~l~~Rl------------------------------------  199 (268)
                      ...||++|||||+..|++.+.+ ...+|.||+|++|++.+++|+                                    
T Consensus        92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr  171 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR  171 (235)
T ss_pred             cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence            5899999999999998877654 578999999999999999987                                    


Q ss_pred             ----hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          200 ----GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       200 ----~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                          ++.++.|++.|+++.+++.+||++.+++..+++.. .++||..|.+.+....
T Consensus       172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~  226 (235)
T KOG3078|consen  172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV  226 (235)
T ss_pred             ccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence                34678999999999999999999999999999888 9999999999998753

>PLN02842 nucleotide kinase

Probab=99.96  E-value=1.1e-27  Score=228.11  Aligned_cols=167  Identities=20%  Similarity=0.391  Sum_probs=152.3

Q ss_pred             EEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccEE
Q 024390           82 AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGF  161 (268)
Q Consensus        82 vI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g~  161 (268)
                      +|+|+|||||||+|+.|+++||+.||+++++++++++.++++|+.+++++.+|+++|++++..++.+++.+..+ ...||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999987532 46789


Q ss_pred             EEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh------------------------------------hHHHH
Q 024390          162 ILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR------------------------------------GGSLK  204 (268)
Q Consensus       162 IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl------------------------------------~~~~~  204 (268)
                      ||||||++..|++.|++. ..||+||+|+|+++++++|+                                    ++.++
T Consensus        80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik  159 (505)
T PLN02842         80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK  159 (505)
T ss_pred             EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence            999999999999999876 47999999999999999995                                    24689


Q ss_pred             HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      +|++.|++...++.++|.  +.++.||+++++++|+++|.+.|....
T Consensus       160 kRL~~Y~~~t~pIl~~Y~--~rl~~IDAsqs~EeVfeeI~~iL~~~L  204 (505)
T PLN02842        160 ARLQIYKKNAEAILSTYS--DIMVKIDGNRPKEVVFEEISSLLSQIQ  204 (505)
T ss_pred             HHHHHHHHHhhhHHHhcC--cEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999995  368899999999999999999998553

>PRK13974 thymidylate kinase; Provisional

Probab=99.79  E-value=3.1e-18  Score=148.14  Aligned_cols=172  Identities=12%  Similarity=0.070  Sum_probs=122.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHhhcCCCChhHHHHHHHHhc--cCcccHHHHHHHH--HHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQDLSPRSSLHKQIANAVNR--GEVVSEDIIFGLL--SKRL  150 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir~~~~~~~~~g~~i~~~l~~--G~~ip~~~~~~ll--~~~l  150 (268)
                      ++.+|+|+|++||||||+++.|++.+.....-  ..+.+....+.++++|+.+++++..  |...++.....++  .++.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999988522110  0122233345678899999999863  3344444433333  2221


Q ss_pred             Hc------CCccCccEEEE-----------cCCcCCHH--HHHHHHhh----cCCCeEEEEecCHHHHHhhhhH----HH
Q 024390          151 ED------GYYRGEIGFIL-----------DGLPRSRI--QAEILDQL----AEIDLVVNFKCADNFIVTNRGG----SL  203 (268)
Q Consensus       151 ~~------~~~~~~~g~Il-----------DGfPr~~~--qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~----~~  203 (268)
                      ..      ... ....+||           +|+|+...  +...++..    ..||++|+|+||++++++|+..    .+
T Consensus        82 ~~~~~~i~~~l-~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~  160 (212)
T PRK13974         82 QHVSKIIRPAL-ENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI  160 (212)
T ss_pred             HHHHHHHHHHH-HCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence            11      101 1222555           78887543  35555543    3699999999999999999843    46


Q ss_pred             HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +++...|.+.+.+...+|.+.+.++.||+++++++|+++|.+.|..
T Consensus       161 e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~  206 (212)
T PRK13974        161 EAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN  206 (212)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            6777889999999999998888999999999999999999999975

>PRK03839 putative kinase; Provisional

Probab=99.76  E-value=1.4e-17  Score=139.96  Aligned_cols=148  Identities=18%  Similarity=0.220  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.||++++++|+++++++++.-     ++....   ..++     ..+..+...+.+.  ..+
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~---~~~~-----~~~~~l~~~~~~~--~~~   65 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKD---DEME-----IDFDKLAYFIEEE--FKE   65 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCC---hhhh-----cCHHHHHHHHHHh--ccC
Confidence            479999999999999999999999999999999987641     111000   0111     1223343444332  124


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHH---HHHHHHch--HHHHHHHhCCcEEEEeCC
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL---EAYAELSK--PLEDYYQKQKKLLEFQVG  233 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl---~~y~~~~~--~l~~~y~~~~~l~~Ida~  233 (268)
                      .+||+||+...         ...++++|+|+++.+++.+|+..+...+.   +.......  .+.+.|...+.++.||++
T Consensus        66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~  136 (180)
T PRK03839         66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTT  136 (180)
T ss_pred             CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            56999997432         34689999999999999999843211111   11111222  233556666778899986


Q ss_pred             -CCHHHHHHHHHHHHHhh
Q 024390          234 -SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       234 -~s~eev~~~I~~~L~~~  250 (268)
                       .++++++++|.+.|...
T Consensus       137 ~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        137 GKTPEEVVEEILELIKSG  154 (180)
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence             69999999999999854

>PRK13973 thymidylate kinase; Provisional

Probab=99.73  E-value=1.1e-16  Score=138.52  Aligned_cols=169  Identities=14%  Similarity=0.167  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCCccch--------hHHHHhhcCCC--ChhHHHHHHHHhccCcccHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM--------SSIVRQDLSPR--SSLHKQIANAVNRGEVVSEDIIF  143 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~--------~dlir~~~~~~--~~~g~~i~~~l~~G~~ip~~~~~  143 (268)
                      +++.|+|+|++||||||+++.|++++   |+.++.+        ++++|+.+..+  ..++..+...+..+  ...+.+.
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            47899999999999999999999999   7777766        55666544321  11222222222222  1223444


Q ss_pred             HHHHHHHHcCCccCccEEE-----EcCCcCC--HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH--------HH
Q 024390          144 GLLSKRLEDGYYRGEIGFI-----LDGLPRS--RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS--------LK  204 (268)
Q Consensus       144 ~ll~~~l~~~~~~~~~g~I-----lDGfPr~--~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~--------~~  204 (268)
                      ..+...+..+..-..+.|+     ++|+++.  ..++..++..    ..||++|+|+||++++.+|+..+        ++
T Consensus        80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e  159 (213)
T PRK13973         80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFE  159 (213)
T ss_pred             HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchh
Confidence            5556666543210112222     3444443  3355556542    47999999999999999998332        22


Q ss_pred             HHHHHHHHHchHHHHHHHh-----CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          205 EKLEAYAELSKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~-----~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ++-..|.+.   +.+.|.+     .++++.||+++++++|+++|.++|...
T Consensus       160 ~~~~~~~~~---~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~  207 (213)
T PRK13973        160 KEDLAFHEK---RREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQR  207 (213)
T ss_pred             hchHHHHHH---HHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            211123222   2222221     236888999999999999999999754

>PRK08356 hypothetical protein; Provisional

Probab=99.72  E-value=1.6e-16  Score=135.51  Aligned_cols=161  Identities=16%  Similarity=0.152  Sum_probs=106.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCC---hhHHH----HHHHHhccCcccH----HHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRS---SLHKQ----IANAVNRGEVVSE----DII  142 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~---~~g~~----i~~~l~~G~~ip~----~~~  142 (268)
                      .+.|+|+|||||||||+|+.|+ ++|+.+|++++.++....    ...   ..+..    ..++++.|..+++    +++
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            4689999999999999999996 589999999986654322    111   22222    2466777777774    556


Q ss_pred             HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH------------HHHHHH
Q 024390          143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK------------EKLEAY  210 (268)
Q Consensus       143 ~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~------------~rl~~y  210 (268)
                      .+++.+.+..     ...|++||+ ++..|++.|.+.  ...+|++++|.+++.+|+..+-.            .++...
T Consensus        84 ~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~  155 (195)
T PRK08356         84 IRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEW  155 (195)
T ss_pred             HHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence            6666566632     235999999 999999998763  35799999999999999832211            111111


Q ss_pred             HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +........ +.+...++.+| +.+.+++.++|..++..
T Consensus       156 ~~~l~~~~~-~~~~aD~vI~N-~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        156 EEKLYHTTK-LKDKADFVIVN-EGTLEELRKKVEEILRE  192 (195)
T ss_pred             HHHhhhhhh-HHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence            111111111 11222233344 68999999999998864

>PRK01184 hypothetical protein; Provisional

Probab=99.71  E-value=1.2e-15  Score=128.51  Aligned_cols=161  Identities=12%  Similarity=0.171  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CC-----hhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RS-----SLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~-----~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      ++|+|+|+|||||||+++ +++++|++++++||++|++... +.     .++..+.+...  . +..+.+..++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence            579999999999999987 7899999999999999998632 21     24554444332  1 1223333444455554


Q ss_pred             CCccCccEEEEcCCcCCHHHHHHHHhhcC-CCeEEEEecCHHHHHhhhhHHHH----HHHHHHHHHc-----hHHHHHHH
Q 024390          153 GYYRGEIGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSLK----EKLEAYAELS-----KPLEDYYQ  222 (268)
Q Consensus       153 ~~~~~~~g~IlDGfPr~~~qa~~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~~~~----~rl~~y~~~~-----~~l~~~y~  222 (268)
                      .   .+..+|+||+ +...|.+.+.+... +..+|+++||++++.+|+..+-.    ...+.+.+..     .++.+.+.
T Consensus        78 ~---~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~  153 (184)
T PRK01184         78 K---GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIA  153 (184)
T ss_pred             c---CCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHH
Confidence            2   4678999999 78888888876543 66899999999999999843210    0011222111     11333343


Q ss_pred             hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          223 KQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       223 ~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ..+  +.|+.+.+++++.++|.+.+..
T Consensus       154 ~ad--~vI~N~~~~~~l~~~v~~~~~~  178 (184)
T PRK01184        154 LAD--YMIVNDSTLEEFRARVRKLLER  178 (184)
T ss_pred             hcC--EEEeCCCCHHHHHHHHHHHHHH
Confidence            333  3455577899999999988764

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.68  E-value=1.3e-15  Score=126.66  Aligned_cols=155  Identities=20%  Similarity=0.211  Sum_probs=106.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc-cCcccHHHHHHHHHHHHHcCC--
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR-GEVVSEDIIFGLLSKRLEDGY--  154 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~-G~~ip~~~~~~ll~~~l~~~~--  154 (268)
                      .+.|+++|+|||||||+++.||+.+|++++|+|.+|.+..      ++.+.+++.. |+....+...+++.+.+....  
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~V   75 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAV   75 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeE
Confidence            4579999999999999999999999999999999998874      4567777664 766667777777776665431  


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhC
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQ  224 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~  224 (268)
                      ...+.|.|+     +....+.+.   .-..+|||++|.|++++|+...          -.+.++...+..   ..+|++.
T Consensus        76 iaTGGG~v~-----~~enr~~l~---~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R---~~~Y~e~  144 (172)
T COG0703          76 IATGGGAVL-----SEENRNLLK---KRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEER---QPLYREV  144 (172)
T ss_pred             EECCCcccc-----CHHHHHHHH---hCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHH---HHHHHHh
Confidence            122333333     333334443   3348999999999999999311          123343333333   4446543


Q ss_pred             CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          225 KKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       225 ~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       ..+.++++...+++.++|...|...
T Consensus       145 -a~~~~~~~~~~~~v~~~i~~~l~~~  169 (172)
T COG0703         145 -ADFIIDTDDRSEEVVEEILEALEGS  169 (172)
T ss_pred             -CcEEecCCCCcHHHHHHHHHHHHHh
Confidence             2456676666699999999988753

>PRK13949 shikimate kinase; Provisional

Probab=99.66  E-value=4.5e-15  Score=124.13  Aligned_cols=151  Identities=16%  Similarity=0.233  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      ++|+|+|+|||||||+++.||+.++++++++++++.+...      ..+.+.+ ..|+....+...+++.+ +..     
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~-----   69 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAE-----   69 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence            4799999999999999999999999999999998877642      2333433 34555555666666655 332     


Q ss_pred             ccEEEE-c--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-----------HHHHHHHHHHHchHHHHHHHh
Q 024390          158 EIGFIL-D--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-----------LKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       158 ~~g~Il-D--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-----------~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      ..++|+ +  |+|....+.+.+.+   .+++|||++|.+++.+|+...           ..+.++.+.+.......+|+.
T Consensus        70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~  146 (169)
T PRK13949         70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ  146 (169)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            234555 4  46666666666653   578999999999999998310           011122333334445566766


Q ss_pred             CCcEEEEeCC-CCHHHHHHHHHHH
Q 024390          224 QKKLLEFQVG-SAPVETWQGLLTA  246 (268)
Q Consensus       224 ~~~l~~Ida~-~s~eev~~~I~~~  246 (268)
                      .+  +.||++ .+++|++++|.+.
T Consensus       147 ad--~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        147 AK--IIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             CC--EEEECCCCCHHHHHHHHHHh
Confidence            33  556754 5899999998865

>PLN02924 thymidylate kinase

Probab=99.65  E-value=6.3e-15  Score=128.27  Aligned_cols=177  Identities=16%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             CCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-HHHHHH
Q 024390           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-IIFGLL  146 (268)
Q Consensus        68 ~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-~~~~ll  146 (268)
                      .++++..+.+++.|+|+|++||||||+++.|++.++...+++ ..+++ ...++..|+.+++.+..+..+... ...-..
T Consensus         6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~   83 (220)
T PLN02924          6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFS   83 (220)
T ss_pred             cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            344445557889999999999999999999999997655544 22332 223577899999988766544332 111112


Q ss_pred             HHHHHcC-----CccCccEEEEcCCcCCHH--HH------HHHH---h-hcCCCeEEEEecCHHHHHhhhhHHHHHHHH-
Q 024390          147 SKRLEDG-----YYRGEIGFILDGLPRSRI--QA------EILD---Q-LAEIDLVVNFKCADNFIVTNRGGSLKEKLE-  208 (268)
Q Consensus       147 ~~~l~~~-----~~~~~~g~IlDGfPr~~~--qa------~~l~---~-~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~-  208 (268)
                      .++.+..     ....+..+|.|.|..+..  |.      +++.   . ...||++|+|++|++++.+|.... .++++ 
T Consensus        84 adR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-~~~~E~  162 (220)
T PLN02924         84 ANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-GERYEK  162 (220)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cccccc
Confidence            2222111     012356788898765421  21      1122   1 247999999999999999996311 11221 


Q ss_pred             -HHHHHchHHHHHHHh--CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          209 -AYAELSKPLEDYYQK--QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       209 -~y~~~~~~l~~~y~~--~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       .|.+.   +.+.|.+  ...++.||++.++++|+++|.+.+...
T Consensus       163 ~~~~~r---v~~~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~  204 (220)
T PLN02924        163 LEFQKK---VAKRFQTLRDSSWKIIDASQSIEEVEKKIREVVLDT  204 (220)
T ss_pred             HHHHHH---HHHHHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHH
Confidence             33333   2233322  235778899999999999999998753

>PRK06217 hypothetical protein; Validated

Probab=99.65  E-value=4.1e-15  Score=125.59  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      +++|+|+|+|||||||+|+.|++++|++++++|+++++..  +.+.+          ...+.+....++.+.+..     
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~-----   63 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPFT----------TKRPPEERLRLLLEDLRP-----   63 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence            3679999999999999999999999999999999887532  11111          112444445555555532     


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH---------------------HHHHHHHHH----
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL---------------------KEKLEAYAE----  212 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~---------------------~~rl~~y~~----  212 (268)
                      +.+||+||++...  .+.+  ...+|.+|+|++|.+++++|+..+.                     .++...|..    
T Consensus        64 ~~~~vi~G~~~~~--~~~~--~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  139 (183)
T PRK06217         64 REGWVLSGSALGW--GDPL--EPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPE  139 (183)
T ss_pred             CCCEEEEccHHHH--HHHH--HhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCC
Confidence            4579999997542  2222  2358899999999999999983211                     111112221    


Q ss_pred             --HchHHHHHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          213 --LSKPLEDYYQKQ-KKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       213 --~~~~l~~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                        .......++... ..++.+++..+++++.++|...|..
T Consensus       140 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        140 GRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             cccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence              111112222322 4678889889999999999998853

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.62  E-value=2.7e-14  Score=123.01  Aligned_cols=171  Identities=16%  Similarity=0.194  Sum_probs=109.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-Ccc-cHHHHHHHHHHHHHc--
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVV-SEDIIFGLLSKRLED--  152 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-~~i-p~~~~~~ll~~~l~~--  152 (268)
                      +++.|+|.|+.||||||+++.|++++.-..+   +++....+.++++|+.+++.+.++ ..+ |.-...-+..+|..+  
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~   78 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE   78 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999854433   233344577899999999998886 333 322222222222221  


Q ss_pred             ----CCccCccEEEEcCCcCCHH--H----------HHHHHhh-c---CCCeEEEEecCHHHHHhhhhHHHH--HHHH--
Q 024390          153 ----GYYRGEIGFILDGLPRSRI--Q----------AEILDQL-A---EIDLVVNFKCADNFIVTNRGGSLK--EKLE--  208 (268)
Q Consensus       153 ----~~~~~~~g~IlDGfPr~~~--q----------a~~l~~~-~---~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~--  208 (268)
                          ..+..+..+|.|.|-.+..  |          ...++++ .   .||++++||+++++.++|+..+-.  .|++  
T Consensus        79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~  158 (208)
T COG0125          79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKE  158 (208)
T ss_pred             HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhH
Confidence                1112355677787654422  3          2222233 2   799999999999999999943211  2333  


Q ss_pred             --HHHHHchHHH-HHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          209 --AYAELSKPLE-DYYQKQ-KKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       209 --~y~~~~~~l~-~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                        .|++.+.... +...+. +.+++||+++++++|.++|...+...
T Consensus       159 ~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~  204 (208)
T COG0125         159 DDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKER  204 (208)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence              2333322221 111112 25899999999999999999998764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.62  E-value=2.9e-15  Score=122.44  Aligned_cols=161  Identities=20%  Similarity=0.154  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|.|.|+|||||||+|+.||+++|++|+|.|+++|+....   .|..+.++-.-.+.-|+  +-..+..+....  ...
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~--iD~~iD~rq~e~--a~~   73 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPE--IDKEIDRRQKEL--AKE   73 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCch--hhHHHHHHHHHH--HHc
Confidence            57999999999999999999999999999999999997542   23333333322222221  112222222222  135


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH--------HHHHHHHHHHHchHHHHHHHh-CC----
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS--------LKEKLEAYAELSKPLEDYYQK-QK----  225 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~--------~~~rl~~y~~~~~~l~~~y~~-~~----  225 (268)
                      .++|++|-     -+.++-+ ..+|+.|||.+|.++..+|+..+        ..+-.+.-..+.+--.++|.- .+    
T Consensus        74 ~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSi  147 (179)
T COG1102          74 GNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSI  147 (179)
T ss_pred             CCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcccee
Confidence            67899874     2233332 46899999999999999998221        111111111122223344431 11    


Q ss_pred             cEEEEeCC-CCHHHHHHHHHHHHHhhcc
Q 024390          226 KLLEFQVG-SAPVETWQGLLTALHLQHI  252 (268)
Q Consensus       226 ~l~~Ida~-~s~eev~~~I~~~L~~~~~  252 (268)
                      .-++||++ .++++|+.-|...+.....
T Consensus       148 yDLVinTs~~~~~~v~~il~~aid~~~~  175 (179)
T COG1102         148 YDLVINTSKWDPEEVFLILLDAIDALSI  175 (179)
T ss_pred             eEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence            12567764 6899999999998876543

>PRK13975 thymidylate kinase; Provisional

Probab=99.60  E-value=1.1e-13  Score=117.42  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=96.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHH------HH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR------LE  151 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~------l~  151 (268)
                      ++.|+|+|++||||||+++.|+++++..+.        ..+.++.+++.+++.+..+..-+..+..-+..++      +.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~--------~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~   73 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWT--------CEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIE   73 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCee--------ECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999985321        1123345666677766554222221111111111      11


Q ss_pred             cCCccCccEEEEcCCcCCHH--H---------HHHHHh-hcCCCeEEEEecCHHHHHhhhhHHH----------HHHHHH
Q 024390          152 DGYYRGEIGFILDGLPRSRI--Q---------AEILDQ-LAEIDLVVNFKCADNFIVTNRGGSL----------KEKLEA  209 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~--q---------a~~l~~-~~~~d~vV~Ld~~~e~l~~Rl~~~~----------~~rl~~  209 (268)
                      .. . ....+|.|.++.+..  |         ...+.. ...||++|+|++|++++.+|+..+-          ++..+.
T Consensus        74 ~~-~-~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~  151 (196)
T PRK13975         74 ED-L-KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEK  151 (196)
T ss_pred             HH-H-cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHH
Confidence            11 1 235688897754321  1         111222 2479999999999999999984321          111122


Q ss_pred             HHHHchHHHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          210 YAELSKPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       210 y~~~~~~l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      |.+...  ...|.....++.||++ .++++++++|.+.|..+.
T Consensus       152 y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~  192 (196)
T PRK13975        152 YLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI  192 (196)
T ss_pred             HHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            222211  1112223357889985 899999999999997653

>PRK08233 hypothetical protein; Provisional

Probab=99.59  E-value=3.5e-14  Score=118.70  Aligned_cols=165  Identities=13%  Similarity=0.156  Sum_probs=97.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|.|+|||||||+|+.|++.++...+...|..+....     ...+...+..|... +......+.+.+......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence            457899999999999999999999997444333333332111     11233344444433 222223333333321101


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHchHHHHH-HHh--C
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELSKPLEDY-YQK--Q  224 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~~~l~~~-y~~--~  224 (268)
                      ....+|+.++|......+ +.  ..+|++|+|++|.+++++|...         .+.+++..|.....+.... +.+  .
T Consensus        76 ~~~~~vivd~~~~~~~~~-~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~  152 (182)
T PRK08233         76 SNVDYIIVDYPFAYLNSE-MR--QFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKP  152 (182)
T ss_pred             CCceEEEEeeehhhccHH-HH--HHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCcc
Confidence            123555544565432222 22  2478999999999999888622         2345566666655554211 111  1


Q ss_pred             CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          225 KKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       225 ~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ...+.||++.++++++++|...|...
T Consensus       153 ~~~~vId~~~~~e~i~~~i~~~l~~~  178 (182)
T PRK08233        153 NADIVLDGALSVEEIINQIEEELYRR  178 (182)
T ss_pred             CCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence            34677999999999999999999865

>PRK13948 shikimate kinase; Provisional

Probab=99.56  E-value=1.8e-13  Score=115.75  Aligned_cols=157  Identities=16%  Similarity=0.082  Sum_probs=102.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ++..|+++|+|||||||+++.|++++|..+||+|.++++..      |..+.+++. .|+....+....++...+..   
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~---   79 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRL---   79 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            55679999999999999999999999999999998887763      344555443 46555555666666554432   


Q ss_pred             cCccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----HH--HHHHHHHHHchHHHHHHHhCCcE
Q 024390          156 RGEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----LK--EKLEAYAELSKPLEDYYQKQKKL  227 (268)
Q Consensus       156 ~~~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----~~--~rl~~y~~~~~~l~~~y~~~~~l  227 (268)
                        ...+|--  |.+....+.+.+.   ....+|||+++.+++.+|+...    +.  ...+...+.......+|....  
T Consensus        80 --~~~VIa~GgG~v~~~~n~~~l~---~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~--  152 (182)
T PRK13948         80 --DYAVISLGGGTFMHEENRRKLL---SRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQAT--  152 (182)
T ss_pred             --CCeEEECCCcEEcCHHHHHHHH---cCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC--
Confidence              1223322  3443344444444   3467999999999999998311    00  111222333333455565422  


Q ss_pred             EEEeC-CCCHHHHHHHHHHHHHh
Q 024390          228 LEFQV-GSAPVETWQGLLTALHL  249 (268)
Q Consensus       228 ~~Ida-~~s~eev~~~I~~~L~~  249 (268)
                      +.|++ +.+++++.++|.+.+..
T Consensus       153 ~~i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        153 IHVSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHH
Confidence            34564 57899999999999876

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.55  E-value=2.5e-13  Score=115.78  Aligned_cols=170  Identities=14%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc--cCcccHHHHHHHHHHHHHcCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR--GEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~--G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      +++.|+|.|++||||||+++.|++.++.....  ..+.. .+.+...++.+++.+..  ....+.......+.++.....
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~--~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   78 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRD--VVFTR-EPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE   78 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCc--eeEee-CCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999987432111  01111 12345677777777763  222222222211222211100


Q ss_pred             ------ccCccEEEEcCCcCCH------------HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH-----HHHHH
Q 024390          155 ------YRGEIGFILDGLPRSR------------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS-----LKEKL  207 (268)
Q Consensus       155 ------~~~~~g~IlDGfPr~~------------~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~-----~~~rl  207 (268)
                            ...+..+|+|.++.+.            .+...+...    ..||++|+|++|++++.+|+..+     ++.+.
T Consensus        79 ~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~  158 (205)
T PRK00698         79 EVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEG  158 (205)
T ss_pred             HHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhh
Confidence                  1235678888544331            122233322    46999999999999999998433     22222


Q ss_pred             HHHHHHchHHHH-HHHh-CCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          208 EAYAELSKPLED-YYQK-QKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       208 ~~y~~~~~~l~~-~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ..|.+....... ...+ ...++.||+++++++++++|.+.+..
T Consensus       159 ~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~  202 (205)
T PRK00698        159 LDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKA  202 (205)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            233333222111 1111 23578899999999999999998864

>PRK08118 topology modulation protein; Reviewed

Probab=99.55  E-value=6.2e-14  Score=117.00  Aligned_cols=95  Identities=17%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      ++|+|+|+|||||||+|+.|++.++++++++|++++..-                ...++++...+++.+.+.      .
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~------~   59 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK------E   59 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc------C
Confidence            579999999999999999999999999999999886521                112344445555554443      3


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      .+||+||.+..... ..+   ..+|.+|+|++|.++++.|+
T Consensus        60 ~~wVidG~~~~~~~-~~l---~~~d~vi~Ld~p~~~~~~R~   96 (167)
T PRK08118         60 DEWIIDGNYGGTMD-IRL---NAADTIIFLDIPRTICLYRA   96 (167)
T ss_pred             CCEEEeCCcchHHH-HHH---HhCCEEEEEeCCHHHHHHHH
Confidence            57999995442221 122   35899999999999999998

>PRK13947 shikimate kinase; Provisional

Probab=99.54  E-value=1.8e-13  Score=113.70  Aligned_cols=153  Identities=18%  Similarity=0.154  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      ++|+|+|+|||||||+|+.||+.+|+++++.+.++++..  +    ..+.+.+. .|+....+....++.. +...    
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g----~~~~~~~~~~ge~~~~~~e~~~~~~-l~~~----   70 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--G----MTVAEIFEKDGEVRFRSEEKLLVKK-LARL----   70 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--C----CcHHHHHHHhChHHHHHHHHHHHHH-Hhhc----
Confidence            369999999999999999999999999999999887763  2    22333332 2433333333344433 3221    


Q ss_pred             ccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhCC
Q 024390          158 EIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQK  225 (268)
Q Consensus       158 ~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~~  225 (268)
                      ...+|-.  |++....+.+.+.+   .+.+|||+++++.+.+|+..+          ..+++..   .......+|...+
T Consensus        71 ~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~---~~~~r~~~y~~ad  144 (171)
T PRK13947         71 KNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKE---LLKEREPFYDFAD  144 (171)
T ss_pred             CCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHH---HHHHHHHHHHhcC
Confidence            1122211  23333334444443   467999999999999998321          1222221   1222334454322


Q ss_pred             cEEEEe-CCCCHHHHHHHHHH-HHHhh
Q 024390          226 KLLEFQ-VGSAPVETWQGLLT-ALHLQ  250 (268)
Q Consensus       226 ~l~~Id-a~~s~eev~~~I~~-~L~~~  250 (268)
                        +.|| ++.+++++.++|.+ ++..+
T Consensus       145 --~~Idt~~~~~~~i~~~I~~~~~~~~  169 (171)
T PRK13947        145 --YTIDTGDMTIDEVAEEIIKAYLKLK  169 (171)
T ss_pred             --EEEECCCCCHHHHHHHHHHHHHhhh
Confidence              3455 56899999999999 66544

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.54  E-value=1.9e-13  Score=115.96  Aligned_cols=163  Identities=15%  Similarity=0.154  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc--ccHHH---H-----HHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDI---I-----FGLL  146 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~--ip~~~---~-----~~ll  146 (268)
                      +++.|+|.|+|||||||+++.|++.++..-.   .++....+.+++.++.+++.+..+..  .....   +     ...+
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~---~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~   78 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGY---DVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHL   78 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999853210   01111122345667777776543321  21111   0     0111


Q ss_pred             HHHHHcCCccCccEEEEcCC----------cCCH--HHHHHHHh-hcC--CCeEEEEecCHHHHHhhhhHHH------HH
Q 024390          147 SKRLEDGYYRGEIGFILDGL----------PRSR--IQAEILDQ-LAE--IDLVVNFKCADNFIVTNRGGSL------KE  205 (268)
Q Consensus       147 ~~~l~~~~~~~~~g~IlDGf----------Pr~~--~qa~~l~~-~~~--~d~vV~Ld~~~e~l~~Rl~~~~------~~  205 (268)
                      .+.+... ...+.-+|+|.+          ++..  .+...+.. ...  ||++|+|++|++.+.+|+..+-      .+
T Consensus        79 ~~~i~~~-l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~  157 (195)
T TIGR00041        79 EDKIKPA-LAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFE  157 (195)
T ss_pred             HHHHHHH-HhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHH
Confidence            1112111 112445677743          3221  12233332 233  9999999999999999984321      11


Q ss_pred             HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHH
Q 024390          206 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGL  243 (268)
Q Consensus       206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I  243 (268)
                      ..+.++.......+.+++...++.||+++++++|.++|
T Consensus       158 ~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       158 KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence            12222222222333333344688999999999998875

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.54  E-value=1.9e-13  Score=113.77  Aligned_cols=152  Identities=13%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      ..|+|+|+|||||||+|+.||+++|+++++.+.++.....      ..+.+++. .|.....+...+++. .+..     
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g------~~~~~~~~~~g~~~~~~~e~~~~~-~~~~-----   70 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN------MTVAEIVEREGWAGFRARESAALE-AVTA-----   70 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHHH-HhcC-----
Confidence            4689999999999999999999999999999988877532      11222222 222112222333332 2221     


Q ss_pred             ccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------------HHHHHHHHHHHchHHHHHHH
Q 024390          158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------------LKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       158 ~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------------~~~rl~~y~~~~~~l~~~y~  222 (268)
                      ...+|-.|  ++....+.+.+.   ..+++|+|++|++++.+|+..+             ..+...   +.......+|.
T Consensus        71 ~~~vi~~ggg~vl~~~~~~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~---~~~~~r~~~y~  144 (171)
T PRK03731         71 PSTVIATGGGIILTEENRHFMR---NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVA---EVLAEREALYR  144 (171)
T ss_pred             CCeEEECCCCccCCHHHHHHHH---hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHH---HHHHHHHHHHH
Confidence            22233333  333334444443   4678999999999999998432             112222   22223344565


Q ss_pred             hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          223 KQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       223 ~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +.. .+.||+++++++++++|.+.+..
T Consensus       145 ~~a-~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        145 EVA-HHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             HhC-CEEEcCCCCHHHHHHHHHHHHhc
Confidence            432 36789999999999999998864

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.53  E-value=3.6e-14  Score=128.31  Aligned_cols=153  Identities=12%  Similarity=0.112  Sum_probs=98.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.|++.|+|||||||+|+.|++++ ++.++|.|++ +..+......+..  .+...++..-.+.....+...+.     
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-----   73 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK-----   73 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH-----
Confidence            4678999999999999999999999 9999999765 4443221111100  00000000001222233333333     


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh---cCCCe-EEEEecCHHHHHhhh---------hHHHH---HHHHHHHHHchHHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL---AEIDL-VVNFKCADNFIVTNR---------GGSLK---EKLEAYAELSKPLEDY  220 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~---~~~d~-vV~Ld~~~e~l~~Rl---------~~~~~---~rl~~y~~~~~~l~~~  220 (268)
                      .+..+|+|+++.+..+.+.+...   ....+ +|+|+++.+++.+|+         .+.++   +|++.|...+.|+...
T Consensus        74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~  153 (300)
T PHA02530         74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTA  153 (300)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence            35679999999998887776543   22333 799999999999998         23344   7777887787888666


Q ss_pred             HHhCCcEEEEeCCCCHHH
Q 024390          221 YQKQKKLLEFQVGSAPVE  238 (268)
Q Consensus       221 y~~~~~l~~Ida~~s~ee  238 (268)
                      +....+++.+|.++++.+
T Consensus       154 ~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        154 DPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             CCCCCCEEEEECCCcCcC
Confidence            654456777787666543

>PRK13946 shikimate kinase; Provisional

Probab=99.52  E-value=6.8e-13  Score=112.23  Aligned_cols=162  Identities=14%  Similarity=0.098  Sum_probs=99.9

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      +..++.|+++|+|||||||+++.||+++|+++++++.++.+..  +......+.   ..|+....+...+++...+..  
T Consensus         7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~---~~ge~~~~~~e~~~l~~l~~~--   79 (184)
T PRK13946          7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFA---AYGEPEFRDLERRVIARLLKG--   79 (184)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHhc--
Confidence            3466789999999999999999999999999999998776653  222222111   123333333444555444332  


Q ss_pred             ccCccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-------HHHHHHHHHHchHHHHHHHhCC
Q 024390          155 YRGEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-------KEKLEAYAELSKPLEDYYQKQK  225 (268)
Q Consensus       155 ~~~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-------~~rl~~y~~~~~~l~~~y~~~~  225 (268)
                         +..+|..|  .+......+.+.   .-+++|||++|.+++.+|+..+-       ..-.+.+++.......+|... 
T Consensus        80 ---~~~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~-  152 (184)
T PRK13946         80 ---GPLVLATGGGAFMNEETRAAIA---EKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEA-  152 (184)
T ss_pred             ---CCeEEECCCCCcCCHHHHHHHH---cCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhC-
Confidence               23455554  223333333433   34689999999999999993211       011123333333444556543 


Q ss_pred             cEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          226 KLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       226 ~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .+...+.+.+++++.+.|.+.+...
T Consensus       153 dl~i~~~~~~~~~~~~~i~~~i~~~  177 (184)
T PRK13946        153 DLTVASRDVPKEVMADEVIEALAAY  177 (184)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3433345789999999999998753

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.51  E-value=1.2e-12  Score=110.44  Aligned_cols=163  Identities=12%  Similarity=0.076  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccC---cccHHHH-------HHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDII-------FGL  145 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~---~ip~~~~-------~~l  145 (268)
                      |.|+|+|++||||||+++.|++.+   |..++.+..      +..+..++.+++++..+.   ..+....       ...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999998   554443321      223345666666655432   1111111       011


Q ss_pred             HHHHHHcCCccCccEEEEcCCcCCH------------HHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHHH-----
Q 024390          146 LSKRLEDGYYRGEIGFILDGLPRSR------------IQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLK-----  204 (268)
Q Consensus       146 l~~~l~~~~~~~~~g~IlDGfPr~~------------~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~-----  204 (268)
                      +.+.+... ...+..+|+|.++.+.            .+...+..    ...|+.+|+|+++++++.+|+..+-.     
T Consensus        75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~  153 (200)
T cd01672          75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDE  153 (200)
T ss_pred             HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence            11111110 1246678888554321            22233322    23689999999999999999943211     


Q ss_pred             HHHHHHHHHchHHHHHHHhC--CcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          205 EKLEAYAELSKPLEDYYQKQ--KKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~~--~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .....|.+........+...  ..++.||++.+++++.++|.+.|.
T Consensus       154 ~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         154 QEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            12233444333322222211  357899999999999999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK00625 shikimate kinase; Provisional

Probab=99.50  E-value=3.9e-13  Score=112.86  Aligned_cols=158  Identities=14%  Similarity=0.096  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      |+|+|+|+|||||||+++.||+++|++++|+|+++++.....  ....+.+.++ .|+....+.....+.. +.     .
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~-----~   72 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP-----V   72 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc-----c
Confidence            479999999999999999999999999999999998764321  0112444332 3433333333344422 21     1


Q ss_pred             ccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH----HHHHHHHHHHchHHHHHHHh-CCcEEEE
Q 024390          158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL----KEKLEAYAELSKPLEDYYQK-QKKLLEF  230 (268)
Q Consensus       158 ~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~----~~rl~~y~~~~~~l~~~y~~-~~~l~~I  230 (268)
                      ...+|..|  .+......+.   +..-..||+|++|.+++.+|+..+-    ....+.+.+........|++ .+..+.+
T Consensus        73 ~~~VIs~GGg~~~~~e~~~~---l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~  149 (173)
T PRK00625         73 IPSIVALGGGTLMIEPSYAH---IRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSL  149 (173)
T ss_pred             CCeEEECCCCccCCHHHHHH---HhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeC
Confidence            23344444  2233322233   3345689999999999999984320    00012223333334455655 3344433


Q ss_pred             e----C-CCCHHHHHHHHHHHH
Q 024390          231 Q----V-GSAPVETWQGLLTAL  247 (268)
Q Consensus       231 d----a-~~s~eev~~~I~~~L  247 (268)
                      +    + +.+...+.+.+...|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        150 DHVAETSSESLMRACQSFCTLL  171 (173)
T ss_pred             CCcccCCCCCHHHHHHHHHHHh
Confidence            3    2 356667777666554

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.49  E-value=9.3e-13  Score=108.98  Aligned_cols=145  Identities=18%  Similarity=0.239  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC-CCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~-~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      |+|+|.|.||+||||+|++|+ ++|+.++++.+++.+.-- .+.+  .     ......+..+.+...+...+      .
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~d--e-----~r~s~~vD~d~~~~~le~~~------~   66 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYD--E-----LRKSVIVDVDKLRKRLEELL------R   66 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccC--C-----ccceEEeeHHHHHHHHHHHh------c
Confidence            679999999999999999999 999999999999877521 0000  0     00011233333333333332      2


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcC-CCeEEEEecCHHHHHhhhhH------HHHHHHHHHHHHchHH--HHHHHhCCcEE
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGG------SLKEKLEAYAELSKPL--EDYYQKQKKLL  228 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~------~~~~rl~~y~~~~~~l--~~~y~~~~~l~  228 (268)
                      ..+.|+|+.         +.++.+ +|+||.|.|+++++.+|+.+      .+.+.++   .+...+  .+.......++
T Consensus        67 ~~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENve---AEi~~vi~~EA~E~~~~v~  134 (180)
T COG1936          67 EGSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVE---AEILDVILIEAVERFEAVI  134 (180)
T ss_pred             cCCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHHHHhcCceE
Confidence            457888875         223334 89999999999999999943      3333332   111111  11222235788


Q ss_pred             EEeC-CCCHHHHHHHHHHHHHh
Q 024390          229 EFQV-GSAPVETWQGLLTALHL  249 (268)
Q Consensus       229 ~Ida-~~s~eev~~~I~~~L~~  249 (268)
                      .||. +.+++++.+.|.+++..
T Consensus       135 evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         135 EVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             EEECCCCCHHHHHHHHHHHHcc
Confidence            8986 68999999999999984

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.49  E-value=5.9e-13  Score=130.03  Aligned_cols=164  Identities=13%  Similarity=0.183  Sum_probs=112.4

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHc
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      .|.|..+|+++|+|||||||+++.||+.+|++++|+|+.+.+..      |+.+.+++ ..|+....+...+++.+.+..
T Consensus         2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~   75 (542)
T PRK14021          2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED   75 (542)
T ss_pred             CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46788899999999999999999999999999999999998873      55677766 567777777777777654432


Q ss_pred             CCccCccEEEEc--CCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHchHHHHH
Q 024390          153 GYYRGEIGFILD--GLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELSKPLEDY  220 (268)
Q Consensus       153 ~~~~~~~g~IlD--GfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~~~l~~~  220 (268)
                           ...+|-.  |.+......+.|.++ ..-..+|||+++.+++.+|+..         ...+++....+.   ...+
T Consensus        76 -----~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~---R~~~  147 (542)
T PRK14021         76 -----FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQ---RDPV  147 (542)
T ss_pred             -----CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHH---HHHH
Confidence                 1223322  344444444544433 2345899999999999999721         112334333333   3445


Q ss_pred             HHhCCcEEEEeC-CCCHHHHHHHHHHHHHhhcc
Q 024390          221 YQKQKKLLEFQV-GSAPVETWQGLLTALHLQHI  252 (268)
Q Consensus       221 y~~~~~l~~Ida-~~s~eev~~~I~~~L~~~~~  252 (268)
                      |.+-.. +.||+ +.+++++.++|.+.+....+
T Consensus       148 Y~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~~~~  179 (542)
T PRK14021        148 FRQVAN-VHVHTRGLTPQAAAKKLIDMVAERTV  179 (542)
T ss_pred             HHhhCC-EEEECCCCCHHHHHHHHHHHHHhcce
Confidence            654222 34554 57999999999998876443

>PRK07933 thymidylate kinase; Validated

Probab=99.47  E-value=9.7e-13  Score=113.99  Aligned_cols=160  Identities=19%  Similarity=0.119  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC---CccchhHHHHhhcCCCChhHHHHHHHHhcc--Cc--ccHHHHH--------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNRG--EV--VSEDIIF--------  143 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~---~~is~~dlir~~~~~~~~~g~~i~~~l~~G--~~--ip~~~~~--------  143 (268)
                      |.|+|.|+.||||||+++.|++++.-   .++-+    +.....+++.++.+++.+...  ..  -+.....        
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~   76 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG   76 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence            57999999999999999999999843   22111    110012344556666655431  11  1111111        


Q ss_pred             --HHHHHHHHcCCccCccEEEEcCCcCCHH--HH---------------HHHHh----hcCCCeEEEEecCHHHHHhhhh
Q 024390          144 --GLLSKRLEDGYYRGEIGFILDGLPRSRI--QA---------------EILDQ----LAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       144 --~ll~~~l~~~~~~~~~g~IlDGfPr~~~--qa---------------~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                        ..|...+.     .+..+|.|.|..+..  |.               ..++.    ...||++|+|+++++++.+|+.
T Consensus        77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~  151 (213)
T PRK07933         77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR  151 (213)
T ss_pred             hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence              11222222     345678887765431  21               11221    1269999999999999999984


Q ss_pred             HHH-------HHHHH---HHHHHchHHH-HHHHh--CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          201 GSL-------KEKLE---AYAELSKPLE-DYYQK--QKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       201 ~~~-------~~rl~---~y~~~~~~l~-~~y~~--~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                      .+-       ..+++   .|.+...... +...+  ...++.||+++++++|.++|++.|
T Consensus       152 ~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        152 RRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             hhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            431       11222   3443333322 22222  237888999999999999999876

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.47  E-value=1.3e-12  Score=105.52  Aligned_cols=148  Identities=20%  Similarity=0.300  Sum_probs=100.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      +..++|+|.|.||+||||+|++||+.+|+.+|.+++++++.--- ....+.-     +-..++++-+...|..++.+   
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-~gyDE~y-----~c~i~DEdkv~D~Le~~m~~---   75 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-EGYDEEY-----KCHILDEDKVLDELEPLMIE---   75 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-hcccccc-----cCccccHHHHHHHHHHHHhc---
Confidence            45678999999999999999999999999999999999886210 0000000     11245677788888887764   


Q ss_pred             cCccEEEEcC-----CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH------HHHHHH--HHHHHHchHHHHHHH
Q 024390          156 RGEIGFILDG-----LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG------SLKEKL--EAYAELSKPLEDYYQ  222 (268)
Q Consensus       156 ~~~~g~IlDG-----fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~------~~~~rl--~~y~~~~~~l~~~y~  222 (268)
                         .|.|+|=     ||.           -.+|+||.|.||.+++.+|+..      .+++.+  +.|.-......+.|+
T Consensus        76 ---Gg~IVDyHgCd~Fpe-----------rwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~  141 (176)
T KOG3347|consen   76 ---GGNIVDYHGCDFFPE-----------RWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS  141 (176)
T ss_pred             ---CCcEEeecccCccch-----------hheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC
Confidence               5777772     321           1468999999999999999942      233222  244444445666676


Q ss_pred             hCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          223 KQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       223 ~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      . +.++.+.++ +++++...|..++.
T Consensus       142 ~-~iV~eL~s~-~~Eem~~ni~ri~~  165 (176)
T KOG3347|consen  142 P-KIVVELQSE-TKEEMESNISRILN  165 (176)
T ss_pred             C-cceeecCcC-CHHHHHHHHHHHHH
Confidence            4 367777644 44777766655544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.46  E-value=1.4e-12  Score=107.97  Aligned_cols=156  Identities=20%  Similarity=0.224  Sum_probs=92.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      .++.|+|+|+|||||||+|+.||+.+|+++++.+++++.....  +.....   -..|.....+....++......    
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~---~~~g~~~~~~~~~~~~~~l~~~----   73 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIF---EEEGEAAFRELEEEVLAELLAR----   73 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHH---HHHCHHHHHHHHHHHHHHHHhc----
Confidence            4568999999999999999999999999999999988775432  222111   1123322233334444443332    


Q ss_pred             CccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhC
Q 024390          157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQ  224 (268)
Q Consensus       157 ~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~  224 (268)
                       ...+|..|  +.........|.   ....+|+|++|.+.+.+|+..+          ..+.+..+.....   ..|...
T Consensus        74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~  146 (175)
T PRK00131         74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERD---PLYEEV  146 (175)
T ss_pred             -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH---HHHHhh
Confidence             12233333  111122223332   3468999999999999998421          1122222222222   223321


Q ss_pred             CcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390          225 KKLLEFQV-GSAPVETWQGLLTALHL  249 (268)
Q Consensus       225 ~~l~~Ida-~~s~eev~~~I~~~L~~  249 (268)
                      .. +.||+ +.+++++.+.|.+.+..
T Consensus       147 ~d-l~idt~~~~~~e~~~~I~~~v~~  171 (175)
T PRK00131        147 AD-ITVETDGRSPEEVVNEILEKLEA  171 (175)
T ss_pred             cC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence            12 45664 68999999999998864

>PRK04182 cytidylate kinase; Provisional

Probab=99.45  E-value=5.2e-12  Score=105.26  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|.|+|||||||+|+.|++++|+++++++++++........   .+.+....++..+.  +...+...+.... ..+
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~   74 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGM---SLEEFNKYAEEDPE--IDKEIDRRQLEIA-EKE   74 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCC---CHHHHHHHhhcCch--HHHHHHHHHHHHH-hcC
Confidence            57999999999999999999999999999999988875432111   11112222222221  1111222221110 034


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HHHHHHHHH-HHchHHHHHHHh-----CC
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKEKLEAYA-ELSKPLEDYYQK-----QK  225 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~rl~~y~-~~~~~l~~~y~~-----~~  225 (268)
                      .++|++|.-..     .+.. ..++++|+|++|.+++++|+..+       ..+.+..-. ........+|..     ..
T Consensus        75 ~~~Vi~g~~~~-----~~~~-~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~  148 (180)
T PRK04182         75 DNVVLEGRLAG-----WMAK-DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSI  148 (180)
T ss_pred             CCEEEEEeecc-----eEec-CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence            57888873110     1111 12789999999999999998321       111111100 011112233321     11


Q ss_pred             cEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          226 KLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       226 ~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      .-+.||++ .+++++.+.|.+.+...
T Consensus       149 ~d~~idt~~~~~~~~~~~I~~~~~~~  174 (180)
T PRK04182        149 YDLVINTSRWDPEGVFDIILTAIDKL  174 (180)
T ss_pred             ccEEEECCCCCHHHHHHHHHHHHHHH
Confidence            23567764 69999999999998753

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.45  E-value=2.4e-12  Score=110.05  Aligned_cols=157  Identities=15%  Similarity=0.181  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc------cCcccH-------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSE-------------  139 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~------G~~ip~-------------  139 (268)
                      ++|.|+|++||||||+++.|++.+|++++|+|++.++...++++.++.+.+.+..      |..+..             
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            4799999999999999999999999999999999999988888888888777632      311221             


Q ss_pred             -----HHHHHHHH----HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HH
Q 024390          140 -----DIIFGLLS----KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SL  203 (268)
Q Consensus       140 -----~~~~~ll~----~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~  203 (268)
                           +++-.++.    +++...  ....-+|+| .|.-.+.  .+.  ..+|.+|+++||.++.++|+.+       ..
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~--~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~  154 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQL--KSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRDGLTEEEA  154 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhc--CCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence                 11112222    222221  112334454 3321110  011  2579999999999999999832       34


Q ss_pred             HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      ..|+..   +. +... ...... +.|+.+.+++++.+++.+++.
T Consensus       155 ~~ri~~---Q~-~~~~-k~~~aD-~vI~N~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        155 EARINA---QW-PLEE-KVKLAD-VVLDNSGDLEKLYQQVDQLLK  193 (195)
T ss_pred             HHHHHh---CC-CHHH-HHhhCC-EEEECCCCHHHHHHHHHHHHh
Confidence            444432   22 1221 111122 356778899999999998764

>PRK13976 thymidylate kinase; Provisional

Probab=99.45  E-value=4.5e-12  Score=109.57  Aligned_cols=171  Identities=11%  Similarity=0.008  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-CcccHHHHHHHHHHHHHcC----
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVVSEDIIFGLLSKRLEDG----  153 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-~~ip~~~~~~ll~~~l~~~----  153 (268)
                      +.|+|+|++||||||+++.|++.+.-.. .....+-...+.++.+++.+++.+... ..-|.....-++.+|.+..    
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~-g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I   79 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIY-GENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI   79 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhc-CCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999885310 000111112345677888888877642 2222222112222222110    


Q ss_pred             --CccCccEEEEcCCcCCH------------HHHHHHHhh---cCCCeEEEEecCHHHHHhhhhH-HHHHHHHHHHHHch
Q 024390          154 --YYRGEIGFILDGLPRSR------------IQAEILDQL---AEIDLVVNFKCADNFIVTNRGG-SLKEKLEAYAELSK  215 (268)
Q Consensus       154 --~~~~~~g~IlDGfPr~~------------~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~-~~~~rl~~y~~~~~  215 (268)
                        ....+..+|.|.|..+.            .....+++.   ..||++|+|++|++++++|+.. .++..-..|.+...
T Consensus        80 ~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~  159 (209)
T PRK13976         80 LPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVR  159 (209)
T ss_pred             HHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHH
Confidence              01134567777665432            122333332   3699999999999999999832 12222224444443


Q ss_pred             HHHHHH-HhC-CcEEEEeC---CCC---HHHHHHHHHHHHHhh
Q 024390          216 PLEDYY-QKQ-KKLLEFQV---GSA---PVETWQGLLTALHLQ  250 (268)
Q Consensus       216 ~l~~~y-~~~-~~l~~Ida---~~s---~eev~~~I~~~L~~~  250 (268)
                      .....+ .+. +.++.||+   +++   +++|.++|.+.|...
T Consensus       160 ~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~  202 (209)
T PRK13976        160 KGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAV  202 (209)
T ss_pred             HHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence            332222 222 35777887   345   999999999988654

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.44  E-value=3.8e-12  Score=108.64  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----cccH--------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE--------------  139 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip~--------------  139 (268)
                      .+|.|+|++||||||+++.|++ +|++++++|++.++...++++..+.+.+.+..+.     .+..              
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5799999999999999999999 9999999999999988877777777776653321     1221              


Q ss_pred             ----HHHHHHHHHHHHcCC--ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHH
Q 024390          140 ----DIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEK  206 (268)
Q Consensus       140 ----~~~~~ll~~~l~~~~--~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~r  206 (268)
                          +++-..+.+++....  .....-+|+|. |.-.+  ..+.  ..+|.+|+++||+++..+|+..       .+..|
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e--~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r  156 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE--NGLE--KLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI  156 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc--CCch--hhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence                112222222222110  01123455553 32111  0011  2579999999999999999832       34444


Q ss_pred             HHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          207 LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       207 l~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      +..   +.. ..+.-. . .-+.|+.+.+++++.+++.+++.
T Consensus       157 i~~---Q~~-~~~~~~-~-ad~vI~N~g~~e~l~~qv~~i~~  192 (194)
T PRK00081        157 IAS---QMP-REEKLA-R-ADDVIDNNGDLEELRKQVERLLQ  192 (194)
T ss_pred             HHH---hCC-HHHHHH-h-CCEEEECCCCHHHHHHHHHHHHH
Confidence            442   221 222111 1 12567778899999999998875

>PRK06762 hypothetical protein; Provisional

Probab=99.44  E-value=4.5e-12  Score=104.96  Aligned_cols=152  Identities=18%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ++.|+|.|+|||||||+|+.|++++  ++.+++.+. ++..+.....         ..+ ....+.+..++...+.    
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~----   66 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLG----   66 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHh----
Confidence            5789999999999999999999998  566677654 4443221100         001 0112223333333222    


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhCC-----c
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQK-----K  226 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~-----~  226 (268)
                       .+..+|+|+.-......+.+..+    ..+..+|+|++|.+++.+|...+-.    .+....+.+.++|...+     -
T Consensus        67 -~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~----~~~~~~~~l~~~~~~~~~~~~~~  141 (166)
T PRK06762         67 -HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK----SHEFGEDDMRRWWNPHDTLGVIG  141 (166)
T ss_pred             -CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc----cccCCHHHHHHHHhhcCCcCCCC
Confidence             35678899874443333333332    3466899999999999999843321    11111223444442211     2


Q ss_pred             EEEEeCCCCHHHHHHHHHHHHHh
Q 024390          227 LLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       227 l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .+.++.+.++++|+++|...+..
T Consensus       142 ~~~~~~~~~~~~v~~~i~~~~~~  164 (166)
T PRK06762        142 ETIFTDNLSLKDIFDAILTDIGL  164 (166)
T ss_pred             eEEecCCCCHHHHHHHHHHHhcc
Confidence            34456678999999999988753

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.44  E-value=4.1e-12  Score=106.50  Aligned_cols=153  Identities=16%  Similarity=0.185  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ..+|+|+|++||||||+++.|++.+|+++++++..+.+...  ..    +...+. .|+....+...+++.. +..    
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~----i~~~~~~~g~~~fr~~e~~~l~~-l~~----   72 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--AD----IGWVFDVEGEEGFRDREEKVINE-LTE----   72 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cC----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence            45799999999999999999999999999999987766532  11    222222 2333223333444444 221    


Q ss_pred             CccEEEEc-C--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH----------HHHHHHHHHHHHchHHHHHHHh
Q 024390          157 GEIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG----------SLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       157 ~~~g~IlD-G--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~----------~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                       ..++|+. |  .+.+....+.|.   ..+.+|||++|.+++++|+..          ...+.++.+.+..   ..+|++
T Consensus        73 -~~~~vi~~ggg~v~~~~~~~~l~---~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R---~~~Y~~  145 (172)
T PRK05057         73 -KQGIVLATGGGSVKSRETRNRLS---ARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANER---NPLYEE  145 (172)
T ss_pred             -CCCEEEEcCCchhCCHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH---HHHHHh
Confidence             1233442 2  233333333443   457899999999999999821          1123344444443   444654


Q ss_pred             CCcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390          224 QKKLLEFQV-GSAPVETWQGLLTALHL  249 (268)
Q Consensus       224 ~~~l~~Ida-~~s~eev~~~I~~~L~~  249 (268)
                      -.. +.||+ +.+++++.+.|.+.+.+
T Consensus       146 ~Ad-~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        146 IAD-VTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             hCC-EEEECCCCCHHHHHHHHHHHHhh
Confidence            222 45665 47999999999988864

>PLN02199 shikimate kinase

Probab=99.43  E-value=9.1e-12  Score=111.99  Aligned_cols=160  Identities=11%  Similarity=0.106  Sum_probs=102.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .+..|+|+|++||||||+++.||+.+|+++||+|.++.+...     |..+.+++. .|+....+...++|.+....   
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~---  172 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR---  172 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            456799999999999999999999999999999999988632     223444443 46666666666666654332   


Q ss_pred             cCccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH--H-----HH--------HHHHHHHHHchHHH
Q 024390          156 RGEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG--S-----LK--------EKLEAYAELSKPLE  218 (268)
Q Consensus       156 ~~~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~--~-----~~--------~rl~~y~~~~~~l~  218 (268)
                        ...+|-.  |.+........+.    -.++|||++|.|++.+|+..  .     +.        +-.+...+......
T Consensus       173 --~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~  246 (303)
T PLN02199        173 --YQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERG  246 (303)
T ss_pred             --CCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHH
Confidence              1223322  2233333333333    26799999999999999842  0     10        00122333344455


Q ss_pred             HHHHhCCcEEEE-----------eCCCCHHHHHHHHHHHHHhh
Q 024390          219 DYYQKQKKLLEF-----------QVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       219 ~~y~~~~~l~~I-----------da~~s~eev~~~I~~~L~~~  250 (268)
                      .+|.+.+..+.+           ..+.+++++..+|.+.+...
T Consensus       247 plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~  289 (303)
T PLN02199        247 EAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF  289 (303)
T ss_pred             HHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            667764433331           13688999999998888644

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.42  E-value=7.8e-12  Score=103.41  Aligned_cols=155  Identities=17%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      |+|+|.|++||||||+|+.|++.+|+++++.+++++..... +.+.. .........   +  .+...+...+.... ..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~---~--~~~~~~~~~i~~~~-~~   73 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI-EFLNYAEEN---P--EIDKKIDRRIHEIA-LK   73 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHH-HHHHHHhcC---c--HHHHHHHHHHHHHH-hc
Confidence            47999999999999999999999999999999988775321 11111 111111111   1  11222322222211 13


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHHHchH-HHHHHHh-----C
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELSKP-LEDYYQK-----Q  224 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~-l~~~y~~-----~  224 (268)
                      +.++|++|.-...    .+  ...+|++|++++|.+++.+|+..       ...+++..-.+.... ...+|..     .
T Consensus        74 ~~~~Vi~g~~~~~----~~--~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~  147 (171)
T TIGR02173        74 EKNVVLESRLAGW----IV--REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLS  147 (171)
T ss_pred             CCCEEEEecccce----ee--cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            4578999852211    01  12478999999999999999832       122222211111111 1233321     2


Q ss_pred             CcEEEEeCC-CCHHHHHHHHHHHH
Q 024390          225 KKLLEFQVG-SAPVETWQGLLTAL  247 (268)
Q Consensus       225 ~~l~~Ida~-~s~eev~~~I~~~L  247 (268)
                      ..-+.||.+ .++++ .+.|.+++
T Consensus       148 ~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       148 IYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             cccEEEECCCCCHHH-HHHHHHHh
Confidence            233678865 68999 99888765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.41  E-value=2.6e-12  Score=117.31  Aligned_cols=164  Identities=16%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRL  150 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l  150 (268)
                      ..-+..+..|+|+|+|||||||+++.|++++|+++++++..+.+...      ..+.+.+. .|+....+...+.+.+.+
T Consensus       127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G------~~i~ei~~~~G~~~fr~~e~~~l~~ll  200 (309)
T PRK08154        127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG------LSVSEIFALYGQEGYRRLERRALERLI  200 (309)
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            33456778899999999999999999999999999999987766532      12333322 344333444455555544


Q ss_pred             HcCCccCccEEEEcCC--cCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH--------HHHHHHHHHHchHHHHH
Q 024390          151 EDGYYRGEIGFILDGL--PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELSKPLEDY  220 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGf--Pr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~  220 (268)
                      ...    ...+|-.|.  +.....   +..+....++|||++|.+++.+|+..+-        ....+.+++.......+
T Consensus       201 ~~~----~~~VI~~Ggg~v~~~~~---~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~  273 (309)
T PRK08154        201 AEH----EEMVLATGGGIVSEPAT---FDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPL  273 (309)
T ss_pred             hhC----CCEEEECCCchhCCHHH---HHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence            432    223333332  222222   2223334679999999999999984321        11123333444444556


Q ss_pred             HHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          221 YQKQKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       221 y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      |+..+  ++||++ .+++++.++|...+...
T Consensus       274 y~~ad--~~I~t~~~s~ee~~~~I~~~l~~~  302 (309)
T PRK08154        274 YARAD--AVVDTSGLTVAQSLARLRELVRPA  302 (309)
T ss_pred             HHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence            65322  356655 59999999999999654

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.41  E-value=3.7e-12  Score=107.48  Aligned_cols=158  Identities=11%  Similarity=0.027  Sum_probs=91.5

Q ss_pred             EEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-HHHHHHHHHHHc---C---Cc
Q 024390           83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-IIFGLLSKRLED---G---YY  155 (268)
Q Consensus        83 I~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-~~~~ll~~~l~~---~---~~  155 (268)
                      |.|++||||||+++.|++++.-..+.   .+....+..++.|+.+++.+..+...+.. ...-...++...   .   .+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~---~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l   77 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYK---VIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL   77 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEE---EEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999998544432   11122345678889999888844333322 111111122110   0   01


Q ss_pred             cCccEEEEcCCcCC------------HHHHHHHH-hhc--CCCeEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHch
Q 024390          156 RGEIGFILDGLPRS------------RIQAEILD-QLA--EIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSK  215 (268)
Q Consensus       156 ~~~~g~IlDGfPr~------------~~qa~~l~-~~~--~~d~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~  215 (268)
                      ..+..+|.|.+..+            ......+. .+.  .||++|+|+++++++.+|+..+-     ...-..|.+...
T Consensus        78 ~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~  157 (186)
T PF02223_consen   78 KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVR  157 (186)
T ss_dssp             HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHH
T ss_pred             cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHH
Confidence            23567787854221            12222222 234  89999999999999999993321     111122222222


Q ss_pred             -HHHHHHHhCCcEEEEeCCCCHHHHHHHH
Q 024390          216 -PLEDYYQKQKKLLEFQVGSAPVETWQGL  243 (268)
Q Consensus       216 -~l~~~y~~~~~l~~Ida~~s~eev~~~I  243 (268)
                       ...+.++..+.++.||++.++++|.++|
T Consensus       158 ~~y~~l~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  158 EAYLELAKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence             2223333356899999999999999886

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK04040 adenylate kinase; Provisional

Probab=99.41  E-value=1e-11  Score=105.61  Aligned_cols=159  Identities=12%  Similarity=0.116  Sum_probs=92.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhhcCCCCh--hHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSS--LHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~~~~~~~--~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      +++|+|.|+|||||||+++.|++++  ++.+++.|+++++......-  ....++..    ..........+..+++...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence            4689999999999999999999999  89999999998776432210  01111110    0000111222333444332


Q ss_pred             CccCccEEEEcCCcC--CH------HHHHHHHhhcCCCeEEEEecCHHHHHhhhhH------------HHHHHHHHHHHH
Q 024390          154 YYRGEIGFILDGLPR--SR------IQAEILDQLAEIDLVVNFKCADNFIVTNRGG------------SLKEKLEAYAEL  213 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr--~~------~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~------------~~~~rl~~y~~~  213 (268)
                        ..+..+|+||...  +.      .....+.. ..||.+|+|.++++++++|...            .++.+.+.    
T Consensus        78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~----  150 (188)
T PRK04040         78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEM----  150 (188)
T ss_pred             --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHH----
Confidence              2344588887321  00      12233333 4899999999999999888732            22333222    


Q ss_pred             chHHHHHHHh-CC-cE-EEEeCCCCHHHHHHHHHHHH
Q 024390          214 SKPLEDYYQK-QK-KL-LEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       214 ~~~l~~~y~~-~~-~l-~~Ida~~s~eev~~~I~~~L  247 (268)
                      ......+|.. .+ .+ +.+|-+..+++.++++.++|
T Consensus       151 a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        151 NRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            1112223332 12 33 34444444999999998876

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.37  E-value=9.1e-12  Score=102.79  Aligned_cols=153  Identities=11%  Similarity=0.102  Sum_probs=84.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----HHH---HHHHHHHHHHcC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDI---IFGLLSKRLEDG  153 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----~~~---~~~ll~~~l~~~  153 (268)
                      |+|+|++||||||+++.|++.++..+++.+++......         . .+..|....    ++.   +.+.+...+.. 
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-   69 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------E-KMSAGIPLNDDDRWPWLQNLNDASTAAAAK-   69 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------H-HHHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence            57899999999999999999999999999886422100         0 001111111    111   11222222322 


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHhCCcEEEEe
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQKQKKLLEFQ  231 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~~~~l~~Id  231 (268)
                         ....+|-.++.+ ....+.+......-.+|+|++|.+++.+|+..+-..  ..+....+...+..--.....++.||
T Consensus        70 ---~~~~Vi~~t~~~-~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id  145 (163)
T TIGR01313        70 ---NKVGIITCSALK-RHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVD  145 (163)
T ss_pred             ---CCCEEEEecccH-HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEE
Confidence               223344445432 333344443332234799999999999999433210  00111111111110000112578999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 024390          232 VGSAPVETWQGLLTALH  248 (268)
Q Consensus       232 a~~s~eev~~~I~~~L~  248 (268)
                      ++++++++.+++.+.|-
T Consensus       146 ~~~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       146 IDQPLEGVEEDCIAVVL  162 (163)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988763

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.36  E-value=1.8e-11  Score=101.05  Aligned_cols=143  Identities=19%  Similarity=0.213  Sum_probs=91.7

Q ss_pred             CCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccCccEEEEc-
Q 024390           87 PRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRGEIGFILD-  164 (268)
Q Consensus        87 pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~~~g~IlD-  164 (268)
                      |||||||+++.||+.+|++++|+|+++.+..      |..+.+++. .|+....+...+++.+.+..     ...+|-- 
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~-----~~~VIa~G   69 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKE-----NNCVIACG   69 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSEEEEE-
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhcc-----CcEEEeCC
Confidence            7999999999999999999999999997763      455666554 45444455556666544433     2334433 


Q ss_pred             -CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH---------H--HHHHHHHHHchHHHHHHHhCCcEEEEeC
Q 024390          165 -GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL---------K--EKLEAYAELSKPLEDYYQKQKKLLEFQV  232 (268)
Q Consensus       165 -GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~---------~--~rl~~y~~~~~~l~~~y~~~~~l~~Ida  232 (268)
                       |.+......+.|.   ....+|||+++.+++.+|+...-         .  .....+. .   ....|..... +.++.
T Consensus        70 GG~~~~~~~~~~L~---~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~---R~~~Y~~~a~-~~v~~  141 (158)
T PF01202_consen   70 GGIVLKEENRELLK---ENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-E---REPLYEQAAD-IVVDT  141 (158)
T ss_dssp             TTGGGSHHHHHHHH---HHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-H---HHHHHHHHSS-EEEET
T ss_pred             CCCcCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-H---HHHHHHhcCe-EEEeC
Confidence             4666666666665   34579999999999999983211         1  1122222 3   3344544333 45676


Q ss_pred             CCCH-HHHHHHHHHHHH
Q 024390          233 GSAP-VETWQGLLTALH  248 (268)
Q Consensus       233 ~~s~-eev~~~I~~~L~  248 (268)
                      +..+ +++.++|.+.|+
T Consensus       142 ~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  142 DGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             SSCHHHHHHHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            6554 999999998874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.36  E-value=1.6e-11  Score=105.40  Aligned_cols=158  Identities=13%  Similarity=0.107  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH-----H-------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-----D-------------  140 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~-----~-------------  140 (268)
                      ++|.|+|++||||||+++.|++ +|+++|+.|++.++...++.+..+.+.+.+..+...++     .             
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4799999999999999999997 89999999999999888888777777777654332221     0             


Q ss_pred             -----HHHHHH----HHHHHcCCccCc-cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHH
Q 024390          141 -----IIFGLL----SKRLEDGYYRGE-IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSL  203 (268)
Q Consensus       141 -----~~~~ll----~~~l~~~~~~~~-~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~  203 (268)
                           ++...+    .+++... ...+ ..++++ .|.-.+.  .+  ...+|.+|+++||.++.++|+.       +..
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~-~~~~~~~vv~e-~plL~e~--g~--~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~  154 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEA-RAQGAKVAVYD-MPLLVEK--GL--DRKMDLVVVVDVDVEERVRRLVEKRGLDEDDA  154 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHH-HhcCCCEEEEE-eeceeEc--Cc--cccCCeEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence                 111111    1122111 0011 223333 3321110  00  1257999999999999999983       233


Q ss_pred             HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ..|+..   +... .... .. ..+.|+.+.+++++.+++..++..
T Consensus       155 ~~ri~~---Q~~~-~~k~-~~-ad~vI~N~g~~e~l~~~v~~~~~~  194 (200)
T PRK14734        155 RRRIAA---QIPD-DVRL-KA-ADIVVDNNGTREQLLAQVDGLIAE  194 (200)
T ss_pred             HHHHHh---cCCH-HHHH-Hh-CCEEEECcCCHHHHHHHHHHHHHH
Confidence            444432   2221 1111 11 235678889999999999988753

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.32  E-value=7.1e-12  Score=107.36  Aligned_cols=163  Identities=10%  Similarity=0.057  Sum_probs=97.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHH----HH---------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSED----II---------  142 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~----~~---------  142 (268)
                      .++.|+|.|+|||||||+|+.|++++|+.++..+|++|+.+......+ ...++.+..|+.++++    ++         
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999865322211 1122223333333221    11         


Q ss_pred             -----HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEec-CHHHHHhhhhHHH--------HHHHH
Q 024390          143 -----FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC-ADNFIVTNRGGSL--------KEKLE  208 (268)
Q Consensus       143 -----~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~-~~e~l~~Rl~~~~--------~~rl~  208 (268)
                           ..++...+     ..+..+|+||......+.+.... .. ..++++.+ +++.+.+|+..+.        .+|+-
T Consensus        82 v~~~L~~va~~~l-----~~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~  154 (197)
T PRK12339         82 IMPGINRVIRRAL-----LNGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLA  154 (197)
T ss_pred             HHHHHHHHHHHHH-----HcCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHH
Confidence                 11122222     24677999997665554432211 22 35666665 5677778884432        23444


Q ss_pred             HHHHHchHHHHHHHhC---CcEEEEeCCCCHHHHHHHHHHHH
Q 024390          209 AYAELSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       209 ~y~~~~~~l~~~y~~~---~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                      .|-.++..+.+|.-+.   ..+-.|+ +.+.++.++.+.+.+
T Consensus       155 ~~~~~ir~i~~~l~~~a~~~~i~~i~-~~~~~~~~~~~~~~~  195 (197)
T PRK12339        155 EHLPEYRTIMDYSIADARGYNIKVID-TDNYREARNPLLDPI  195 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeec-CccHHHHHHHHHHHh
Confidence            4444555566665432   1244455 677888888887654

>PRK07261 topology modulation protein; Provisional

Probab=99.31  E-value=8.6e-12  Score=104.42  Aligned_cols=96  Identities=19%  Similarity=0.196  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      ++|+|+|+|||||||+|+.|++.+|+++++.|++....   +             ....+.+.....+...+.+      
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~------   58 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK------   58 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC------
Confidence            57999999999999999999999999999998765321   0             0112334444555554432      


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ..||+||.+....+...+.   ..|.+|+|++|.++++.|+
T Consensus        59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~   96 (171)
T PRK07261         59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRA   96 (171)
T ss_pred             CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHH
Confidence            2499999876544444443   5789999999999999998

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.30  E-value=1e-10  Score=101.67  Aligned_cols=166  Identities=12%  Similarity=0.051  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHH-hhcCCCChhHHH------HHHHHhccC---cccHHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVR-QDLSPRSSLHKQ------IANAVNRGE---VVSEDIIFGLLSK  148 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir-~~~~~~~~~g~~------i~~~l~~G~---~ip~~~~~~ll~~  148 (268)
                      .|+|.|+.||||||+++.|+++++...+... .... ...+.+..+++.      ++.+..+..   .........++..
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            4899999999999999999999987544222 1100 011111222221      333333222   1122222122222


Q ss_pred             HHHcC------CccCccEEEEcCCcCCHH--H-------------HH---HHHh-----hcCCCeEEEEecCHHHHHhhh
Q 024390          149 RLEDG------YYRGEIGFILDGLPRSRI--Q-------------AE---ILDQ-----LAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       149 ~l~~~------~~~~~~g~IlDGfPr~~~--q-------------a~---~l~~-----~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      +..+.      ....+..+|+|.++-+..  |             .+   .+.+     ...||++|+|++|++.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence            22210      012356789998753321  1             11   1111     146999999999999999998


Q ss_pred             hHHHH----HHHHHHHHHchHH-HHH----HHhCCcEEEEeCC--CCHHHHHHHHHH
Q 024390          200 GGSLK----EKLEAYAELSKPL-EDY----YQKQKKLLEFQVG--SAPVETWQGLLT  245 (268)
Q Consensus       200 ~~~~~----~rl~~y~~~~~~l-~~~----y~~~~~l~~Ida~--~s~eev~~~I~~  245 (268)
                      ..+-.    ..-..|.+..... .++    |.+...++.+|++  .+++++..+|..
T Consensus       161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         161 KKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence            32211    0111233222222 122    2334478899988  788888887653

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.27  E-value=2.8e-11  Score=97.16  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .|+|+|+|||||||+++.|++.++..+|+.+++.........+    ... ..+.       -.+.+...+...+..   
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~l~~---   69 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIE-AEER-------AYQILNAAIRKALRN---   69 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHH-HHHH-------HHHHHHHHHHHHHHT---
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHH-HHHH-------HHHHHHHHHHHHHHc---
Confidence            4899999999999999999999999999998877665431111    000 0000       112334445555543   


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                        +..+|+|+.-....+.+.+.+.    .....+|+|+++.+++.+|+.
T Consensus        70 --g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~  116 (143)
T PF13671_consen   70 --GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLA  116 (143)
T ss_dssp             --T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHH
T ss_pred             --CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHH
Confidence              4568888655554544444332    235579999999999999983

...

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.27  E-value=5.6e-11  Score=114.71  Aligned_cols=144  Identities=15%  Similarity=0.187  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHcCC--c
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY--Y  155 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~--~  155 (268)
                      |+|+|+|+|||||||+++.|++.+|++++++|+++.+..      |..+.+++ ..|+....+...+.+++......  .
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi   74 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV   74 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence            579999999999999999999999999999999887752      22233333 23554455555565655433211  1


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----H---HHHHHHHHHHchHHHHHHHhCCcEE
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----L---KEKLEAYAELSKPLEDYYQKQKKLL  228 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----~---~~rl~~y~~~~~~l~~~y~~~~~l~  228 (268)
                      ..+.|+|+|     ..+.+.|.+    +.+|||+++.+++.+|+..+    .   .+++..   ........|++   +.
T Consensus        75 s~Gggvv~~-----~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~---L~~~R~~lY~~---~~  139 (488)
T PRK13951         75 ATGGGVVID-----PENRELLKK----EKTLFLYAPPEVLMERVTTENRPLLREGKERIRE---IWERRKQFYTE---FR  139 (488)
T ss_pred             ECCCccccC-----hHHHHHHhc----CeEEEEECCHHHHHHHhccCCCCCccccHHHHHH---HHHHHHHHHhc---cc
Confidence            134444444     233444443    45999999999999998321    0   122322   22223344543   24


Q ss_pred             EEeCC-CCHHHHHHHH
Q 024390          229 EFQVG-SAPVETWQGL  243 (268)
Q Consensus       229 ~Ida~-~s~eev~~~I  243 (268)
                      .||++ .+++++.+++
T Consensus       140 ~IDt~~~s~~e~~~~i  155 (488)
T PRK13951        140 GIDTSKLNEWETTALV  155 (488)
T ss_pred             EEECCCCCHHHHHHHH
Confidence            67764 5676766554

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.26  E-value=1.4e-10  Score=100.09  Aligned_cols=161  Identities=8%  Similarity=0.065  Sum_probs=98.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc--------cC-cccHH-------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR--------GE-VVSED-------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~--------G~-~ip~~-------  140 (268)
                      ..+.|.|.|++||||||+++.|++ +|++.++.|.+.++...++......+...+..        |. .+...       
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            346799999999999999999997 89999999999888766655443444433311        21 01111       


Q ss_pred             -----------HHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh------
Q 024390          141 -----------IIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR------  199 (268)
Q Consensus       141 -----------~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl------  199 (268)
                                 ++...+    ...+.... ..+..+|+-+.|.-.+ . .+  ...+|.+|++++|.+++.+|+      
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~pLL~e-~-~~--~~~~d~ii~V~a~~e~~~~Rl~~R~~~  157 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAAILFE-S-GG--DAGLDFIVVVAADTELRLERAVQRGMG  157 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEeeeeee-c-Cc--hhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence                       111112    22222110 1222454444443211 0 01  135799999999999999998      


Q ss_pred             -hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          200 -GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       200 -~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                       ++.+.+|++.+......+ +    . .-+.|+.+.+++++.++|.+.+..
T Consensus       158 s~e~~~~Ri~~q~~~~~~~-~----~-ad~vI~N~g~~e~l~~~i~~~~~~  202 (208)
T PRK14731        158 SREEIRRRIAAQWPQEKLI-E----R-ADYVIYNNGTLDELKAQTEQLYQV  202 (208)
T ss_pred             CHHHHHHHHHHcCChHHHH-H----h-CCEEEECCCCHHHHHHHHHHHHHH
Confidence             345667776543332222 1    1 124567789999999999988764

>PLN02422 dephospho-CoA kinase

Probab=99.26  E-value=1.5e-10  Score=101.37  Aligned_cols=159  Identities=13%  Similarity=0.115  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccH-------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE-------------  139 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~-------------  139 (268)
                      +.|.|+|.+||||||+++.|+ ++|++++|+|++.++...++++....+.+.+.      +|. ++.             
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d~~~   79 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSDPSK   79 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCCHHH
Confidence            369999999999999999999 58999999999999998877766666665542      232 221             


Q ss_pred             -----HHHHHHHHHHHH----cCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HH
Q 024390          140 -----DIIFGLLSKRLE----DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SL  203 (268)
Q Consensus       140 -----~~~~~ll~~~l~----~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~  203 (268)
                           +++-..+.+.+.    +.......-+|+| .|.-.+ . .+  ...+|.+|+++||.++.++|+..       ..
T Consensus        80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E-~-~~--~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea  154 (232)
T PLN02422         80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE-T-KM--DKWTKPVVVVWVDPETQLERLMARDGLSEEQA  154 (232)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh-c-ch--hhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence                 122222222221    1100112344555 343211 0 01  12579999999999999999832       33


Q ss_pred             HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .+|+   ..+.. ... ...... +.|+.+.+.+++..++..+++.-
T Consensus       155 ~~Ri---~~Q~~-~ee-k~~~AD-~VI~N~gs~e~L~~qv~~ll~~l  195 (232)
T PLN02422        155 RNRI---NAQMP-LDW-KRSKAD-IVIDNSGSLEDLKQQFQKVLEKI  195 (232)
T ss_pred             HHHH---HHcCC-hhH-HHhhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            4444   22221 111 111222 46777889999999999887653

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.26  E-value=4.4e-10  Score=93.88  Aligned_cols=163  Identities=16%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHH-----------HH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-----------FG  144 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~-----------~~  144 (268)
                      .++.+|++.|..+|||||+|..|.+.+.-.+ .-..++ ..-...+..|+.+..++.+...+|+..+           ..
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~-~~~~l~-~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGL-DPAELL-RFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHHhcc-ChHHhh-hcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            4788999999999999999999999873222 222222 2223457789999998888776776544           33


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHH---HHHHHH---------hhcCCCeEEEEecCHHHHHhhh---hH-----HHH
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRI---QAEILD---------QLAEIDLVVNFKCADNFIVTNR---GG-----SLK  204 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~---qa~~l~---------~~~~~d~vV~Ld~~~e~l~~Rl---~~-----~~~  204 (268)
                      ++++.+.+     +..+|+|-|..+-.   -|+.+.         .+..||+|+||+++++.+.+|-   ++     .++
T Consensus        81 ~i~e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fq  155 (208)
T KOG3327|consen   81 LIKEKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQ  155 (208)
T ss_pred             HHHHHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHH
Confidence            45555543     56688887654321   122222         1358999999999999977765   11     233


Q ss_pred             HHHHHHHHHchHHHHHHH-hCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          205 EKLEAYAELSKPLEDYYQ-KQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~-~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      ++...+.+...      + +...++.+||+.+.|+|.++|..++..-.
T Consensus       156 ekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~  197 (208)
T KOG3327|consen  156 EKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVENVL  197 (208)
T ss_pred             HHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHHHhc
Confidence            33333222211      2 23468999999999999999998887644

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.24  E-value=2.3e-10  Score=95.71  Aligned_cols=156  Identities=17%  Similarity=0.067  Sum_probs=85.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHH----HHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI----IFGLLS  147 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~----~~~ll~  147 (268)
                      ++..|+|+|+|||||||+++.|+++++     ..+++. |-+++.+...             |...+...    ....+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~-------------~~~~~~~~~~~~~~~~l~   71 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHY-------------GYDKQSRIEMALKRAKLA   71 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCC-------------CCCHHHHHHHHHHHHHHH
Confidence            567899999999999999999999885     455554 4455543211             00000110    111222


Q ss_pred             HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHH--HHHHHHchHHHHHHHhCC
Q 024390          148 KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELSKPLEDYYQKQK  225 (268)
Q Consensus       148 ~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~~  225 (268)
                      +.+..    .+..+|+||......-.+.......+.++|+|++|.+++.+|....+....  ....+.......+|....
T Consensus        72 ~~l~~----~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~A  147 (176)
T PRK05541         72 KFLAD----QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKA  147 (176)
T ss_pred             HHHHh----CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCC
Confidence            22321    356788887532111111122234556899999999999999843211110  011111111122333322


Q ss_pred             cEEEEeCC--CCHHHHHHHHHHHHHhhc
Q 024390          226 KLLEFQVG--SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       226 ~l~~Ida~--~s~eev~~~I~~~L~~~~  251 (268)
                       -+.||.+  .++++++++|.+.+..+.
T Consensus       148 -d~vI~~~~~~~~~~~v~~i~~~l~~~~  174 (176)
T PRK05541        148 -DLVIDNSCRTSLDEKVDLILNKLKLRL  174 (176)
T ss_pred             -CEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence             2344544  589999999988886553

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=1.3e-10  Score=93.83  Aligned_cols=155  Identities=12%  Similarity=0.065  Sum_probs=97.7

Q ss_pred             EcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH---HHHHHHcCCccCccE
Q 024390           84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL---LSKRLEDGYYRGEIG  160 (268)
Q Consensus        84 ~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l---l~~~l~~~~~~~~~g  160 (268)
                      +|..||||||+++.||+++|+.+|+-|++--.+.          -+-|..|..+.|+-....   |.+++.+.. ..+..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aN----------i~KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~   69 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPAN----------IEKMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH   69 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHH----------HHHHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence            5999999999999999999999999988664431          134678888877655433   344444321 23344


Q ss_pred             EEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHH--HHHHHHHchHHHHHHHhCCcEEEEeCCCCHHH
Q 024390          161 FILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEK--LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE  238 (268)
Q Consensus       161 ~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~r--l~~y~~~~~~l~~~y~~~~~l~~Ida~~s~ee  238 (268)
                      .|+-.........+.|....+--.+|||+.+.+.+.+|+..+--.-  -.....|...++.-- ....++.||.++++++
T Consensus        70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~-~de~vi~idi~~~~e~  148 (161)
T COG3265          70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPG-ADEDVLTIDIDQPPEE  148 (161)
T ss_pred             eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCC-CCCCEEEeeCCCCHHH
Confidence            5555544444444555443322459999999999999993220000  011122222222100 1125889999999999


Q ss_pred             HHHHHHHHHHhh
Q 024390          239 TWQGLLTALHLQ  250 (268)
Q Consensus       239 v~~~I~~~L~~~  250 (268)
                      +.+++..+|...
T Consensus       149 vv~~~~~~l~~~  160 (161)
T COG3265         149 VVAQALAWLKEG  160 (161)
T ss_pred             HHHHHHHHHhcc
Confidence            999999998753

>TIGR00152 dephospho-CoA kinase

Probab=99.24  E-value=9.8e-11  Score=99.18  Aligned_cols=152  Identities=15%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccH--------------
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE--------------  139 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~--------------  139 (268)
                      +|.|+|.+||||||+++.|++..|++++++|++.++...++.+....+.+.+.      +|. +..              
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~   79 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL   79 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence            48999999999999999999998899999999999988877766666655442      222 111              


Q ss_pred             ----HH----HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHH
Q 024390          140 ----DI----IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLK  204 (268)
Q Consensus       140 ----~~----~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~  204 (268)
                          ++    +...+.+.+.+.  .....+|+-+.|.-...  .+.  ..+|.++++++|.+++++|+.       +.+.
T Consensus        80 ~~le~ilhP~i~~~i~~~i~~~--~~~~~~vvi~~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~  153 (188)
T TIGR00152        80 KWLNNLLHPLIREWMKKLLAQF--QSKLAYVLLDVPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQ  153 (188)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHh--hcCCCEEEEEchHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence                11    112222333322  11213444445432221  111  257899999999999999983       3344


Q ss_pred             HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHH
Q 024390          205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLL  244 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~  244 (268)
                      +|+..   +. +..+. ... .-..|+.+.+++++..++.
T Consensus       154 ~r~~~---q~-~~~~~-~~~-ad~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       154 KRLAS---QM-DIEER-LAR-ADDVIDNSATLADLVKQLE  187 (188)
T ss_pred             HHHHh---cC-CHHHH-HHh-CCEEEECCCCHHHHHHHHh
Confidence            44433   22 11111 111 1245677889999998875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.23  E-value=1.8e-10  Score=96.41  Aligned_cols=161  Identities=15%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHH-hcc--CcccHHH---HHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAV-NRG--EVVSEDI---IFGLLSKR  149 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l-~~G--~~ip~~~---~~~ll~~~  149 (268)
                      +..|+|.|+|||||||+++.|++.++..  |++.|++... +.......   .+.+ .++  ...+++.   ....+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhccc---ccccccCccCCcccchHHHHHHHHHHHH
Confidence            4579999999999999999999998654  5567665543 22110000   0000 011  1112211   22222222


Q ss_pred             HHcCCccCccEEEEcC-CcCCHHHHHHHHhhcC-CCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHh-CCc
Q 024390          150 LEDGYYRGEIGFILDG-LPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQK-QKK  226 (268)
Q Consensus       150 l~~~~~~~~~g~IlDG-fPr~~~qa~~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~-~~~  226 (268)
                      +... ...+..+|+|. ++......+.+..+.. +-..|+++||.+++.+|...+-.. .......   ..+.+.. ...
T Consensus        78 ~~~~-l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~-~~~~~~~---~~~~~~~~~~~  152 (175)
T cd00227          78 VAAM-ARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR-VPGQARK---QARVVHAGVEY  152 (175)
T ss_pred             HHHH-HhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc-cchHHHH---HHHHhcCCCcc
Confidence            2211 12467789986 4422222233333333 346999999999999999543211 1111110   0111221 234


Q ss_pred             EEEEeCC-CCHHHHHHHHHHHH
Q 024390          227 LLEFQVG-SAPVETWQGLLTAL  247 (268)
Q Consensus       227 l~~Ida~-~s~eev~~~I~~~L  247 (268)
                      .+.||++ .+++|+.++|.+.|
T Consensus       153 dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         153 DLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             eEEEECCCCCHHHHHHHHHHhc
Confidence            6788976 58999999998765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.23  E-value=4e-10  Score=95.31  Aligned_cols=155  Identities=12%  Similarity=0.116  Sum_probs=88.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC-----ChhHHHHHHHHhccCcccHHHHH--------H
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR-----SSLHKQIANAVNRGEVVSEDIIF--------G  144 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~-----~~~g~~i~~~l~~G~~ip~~~~~--------~  144 (268)
                      +..++|+||+||||||+++.|+..++...+..+..+.......     ...++.....++.|... ..+..        .
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~   80 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGI   80 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcH
Confidence            4579999999999999999999988765444443332211100     01122222333333221 11100        0


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHH-hhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHHHchH
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD-QLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELSKP  216 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~-~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~  216 (268)
                      -+...+.     .+..+|++|.   ......+. .+..+..+|+|++|.+++.+|+..       .+.+|++.+      
T Consensus        81 ~~~~~l~-----~g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~------  146 (186)
T PRK10078         81 EIDLWLH-----AGFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARA------  146 (186)
T ss_pred             HHHHHHh-----CCCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHh------
Confidence            1233333     2456888876   11122222 234556789999999999999932       334444221      


Q ss_pred             HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          217 LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       217 l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                        .+|. ....++||.+.+++++.++|.++|...
T Consensus       147 --~~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~  177 (186)
T PRK10078        147 --ARYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLS  177 (186)
T ss_pred             --hhhc-cCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence              1232 234567777889999999999998643

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.23  E-value=8.5e-11  Score=95.53  Aligned_cols=106  Identities=19%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccE
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIG  160 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g  160 (268)
                      |+|+|+|||||||+++.|++.+|+.+++.++++......  .......   ..|.........+++.. +..     ..+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~---~~~~~~~~~~e~~~~~~-~~~-----~~~   70 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFA---EEGEEGFRELEREVLLL-LLT-----KEN   70 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHH-Hhc-----cCC
Confidence            899999999999999999999999999999888776432  2221111   11221111112222222 221     224


Q ss_pred             EEEc-C--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390          161 FILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       161 ~IlD-G--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      +|++ |  +......   ...+.....+|||++|.+++.+|+.
T Consensus        71 ~vi~~g~~~i~~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~  110 (154)
T cd00464          71 AVIATGGGAVLREEN---RRLLLENGIVVWLDASPEELLERLA  110 (154)
T ss_pred             cEEECCCCccCcHHH---HHHHHcCCeEEEEeCCHHHHHHHhc
Confidence            4444 2  2222222   2223456789999999999999983

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.22  E-value=1.2e-10  Score=98.04  Aligned_cols=158  Identities=11%  Similarity=0.110  Sum_probs=96.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH-------HHHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-------DIIFGLLSKRL  150 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~-------~~~~~ll~~~l  150 (268)
                      +..++|+|++||||||+++.|+..++..+++.+++....         .++. +..|....+       ..+.......+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence            457899999999999999999999998888877652210         0111 111221111       11122222222


Q ss_pred             HcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHhCCcEE
Q 024390          151 EDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQKQKKLL  228 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l~  228 (268)
                      ..    ...|+|+..+- ...+.+.+.+...+-.+|+|++|.+++.+|+..+-.  ...+.+..+...++..-.....++
T Consensus        73 ~~----~~~g~iv~s~~-~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~  147 (176)
T PRK09825         73 KK----NETGFIVCSSL-KKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIA  147 (176)
T ss_pred             hc----CCCEEEEEEec-CHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeE
Confidence            21    25678776553 333444555555566799999999999999944321  133444444432222111123589


Q ss_pred             EEeCCCCHHHHHHHHHHHHHhh
Q 024390          229 EFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       229 ~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .||++.+++++..++...+..+
T Consensus       148 ~~d~~~~~~~~~~~~~~~~~~~  169 (176)
T PRK09825        148 RIDVNHDIENVTEQCRQAVQAF  169 (176)
T ss_pred             EEECCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.21  E-value=3e-10  Score=100.36  Aligned_cols=151  Identities=14%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      .|+|+|+|||||||+|+.|++.++     +.+++. |.+++....   ...       .++....+....++...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~-------~~e~~~~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKE-------KYEEFIRDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhH-------HhHHHHHHHHHHHHHHHHhC--
Confidence            389999999999999999999873     344544 555554321   000       01111122333445555443  


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHH----hhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHh-------
Q 024390          155 YRGEIGFILDGLPRSRIQAEILD----QLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQK-------  223 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~----~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~-------  223 (268)
                         +..+|+|+......+...+.    ....+.++|+|++|.+.+.+|...+-+. .  -.+....+...|+.       
T Consensus        68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~-~--~~~~i~~l~~r~e~p~~~~~w  141 (249)
T TIGR03574        68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK-I--PNEVIKDMYEKFDEPGTKYSW  141 (249)
T ss_pred             ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC-C--CHHHHHHHHHhhCCCCCCCCc
Confidence               44689998654333322222    2234568999999999999997322110 0  00111112222221       


Q ss_pred             CCcEEEEeCCC--CHHHHHHHHHHHHHh
Q 024390          224 QKKLLEFQVGS--APVETWQGLLTALHL  249 (268)
Q Consensus       224 ~~~l~~Ida~~--s~eev~~~I~~~L~~  249 (268)
                      ....+.||++.  +++++++.|...+..
T Consensus       142 d~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       142 DLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             cCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            12567888765  678999999987753

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.20  E-value=4.3e-10  Score=99.29  Aligned_cols=159  Identities=13%  Similarity=0.155  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccHH------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSED------------  140 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~~------------  140 (268)
                      ++|.|.|.+||||||+++.|++++|++.||.|.+.++...++.+....+.+.+.      +|. ++..            
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~-idR~~L~~~VF~d~~~   80 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGE-LNRAELGKIIFSDAQA   80 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCc-CCHHHHHHHHhCCHHH
Confidence            579999999999999999999999999999999999988887776666665441      222 2211            


Q ss_pred             ------HHHHHHH----HHHHc-------CCc--cCccEEEEcCCcCCHHHHHHHHh-h--cCCCeEEEEecCHHHHHhh
Q 024390          141 ------IIFGLLS----KRLED-------GYY--RGEIGFILDGLPRSRIQAEILDQ-L--AEIDLVVNFKCADNFIVTN  198 (268)
Q Consensus       141 ------~~~~ll~----~~l~~-------~~~--~~~~g~IlDGfPr~~~qa~~l~~-~--~~~d~vV~Ld~~~e~l~~R  198 (268)
                            ++-..+.    +++.+       ...  ....-+|+| .|.-      ++. .  ..+|.+|+++||.++.++|
T Consensus        81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL------~E~~~~~~~~D~iv~V~a~~e~ri~R  153 (244)
T PTZ00451         81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTL------FETKTFTYFVSASVVVSCSEERQIER  153 (244)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echh------hccCchhhcCCeEEEEECCHHHHHHH
Confidence                  1111111    12210       000  012345666 3321      221 1  2469999999999999999


Q ss_pred             hh-------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCC--CCHHHHHHHHHHHHHhhc
Q 024390          199 RG-------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVG--SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       199 l~-------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~--~s~eev~~~I~~~L~~~~  251 (268)
                      +.       +..++|+..   +... .+ ....... .|+.+  .+++++.++|.+.+....
T Consensus       154 L~~R~g~s~eea~~Ri~~---Q~~~-~e-k~~~aD~-VI~N~~~g~~~~L~~~v~~~~~~~~  209 (244)
T PTZ00451        154 LRKRNGFSKEEALQRIGS---QMPL-EE-KRRLADY-IIENDSADDLDELRGSVCDCVAWMS  209 (244)
T ss_pred             HHHcCCCCHHHHHHHHHh---CCCH-HH-HHHhCCE-EEECCCCCCHHHHHHHHHHHHHHHH
Confidence            83       344555533   2221 11 2222233 45556  899999999999886543

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.19  E-value=2.1e-09  Score=92.19  Aligned_cols=164  Identities=18%  Similarity=0.170  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCCh------hHHHHH----------HHHhccCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSS------LHKQIA----------NAVNRGEVV  137 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~~------~g~~i~----------~~l~~G~~i  137 (268)
                      .++|.|-||.||||||+|+.||++||+.|+++|-++|...-    .+.+      +.+.+.          ..+-+|+.+
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv   83 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV   83 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence            37899999999999999999999999999999999987531    1111      011111          011123333


Q ss_pred             cHHHH-----------------HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390          138 SEDII-----------------FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       138 p~~~~-----------------~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      .+.+.                 .+.+.++.... ...+.|+|+||-=-...      -+...++-|||++++|+..+|--
T Consensus        84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~-a~~~~~~V~dGRDiGTv------V~PdA~lKiFLtAS~e~RA~RR~  156 (222)
T COG0283          84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAF-AKNGPGIVADGRDIGTV------VFPDAELKIFLTASPEERAERRY  156 (222)
T ss_pred             hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHH-HhcCCCEEEecCCCcce------ECCCCCeEEEEeCCHHHHHHHHH
Confidence            22111                 11111111111 11236688887300000      01356789999999999988873


Q ss_pred             HHHHHHH--HHHHHHchHH--HHHHHh---------CCcEEEEeC-CCCHHHHHHHHHHHHH
Q 024390          201 GSLKEKL--EAYAELSKPL--EDYYQK---------QKKLLEFQV-GSAPVETWQGLLTALH  248 (268)
Q Consensus       201 ~~~~~rl--~~y~~~~~~l--~~~y~~---------~~~l~~Ida-~~s~eev~~~I~~~L~  248 (268)
                      ..+..+-  ..|++....+  .++.+.         ..--+.||+ +.+++||+++|...++
T Consensus       157 ~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         157 KQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             HHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence            3332221  1233333222  222221         123467776 5899999999999987

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.18  E-value=2.5e-11  Score=94.90  Aligned_cols=106  Identities=25%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-ccCc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRGE  158 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-~~~~  158 (268)
                      +|+|.|+|||||||+|+.|++++|+++++++++++......          ...+..-......+.+.+.+.... ....
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            58999999999999999999999999999999543321100          001110001111222222222110 0246


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ..||+||.-. ..  ..+ .....+.+|+++++.+++.+|.
T Consensus        71 ~~~ii~g~~~-~~--~~~-~~~~~~~~i~l~~~~~~~~~~~  107 (121)
T PF13207_consen   71 DNWIIDGSYE-SE--MEI-RLPEFDHVIYLDAPDEECRERR  107 (121)
T ss_dssp             -EEEEECCSC-HC--CHS-CCHHGGCEEEEEEEEHHHHHHH
T ss_pred             CeEEEeCCCc-cc--hhh-hhhcCCEEEEEECCCHHHHHHH
Confidence            7899999311 10  011 1223467999999998544443

...

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.18  E-value=1.4e-10  Score=99.81  Aligned_cols=165  Identities=8%  Similarity=0.022  Sum_probs=91.3

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHh-CC--CccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccHH-------
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-EV--PRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSED-------  140 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l-~~--~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~~-------  140 (268)
                      |.++..|+|+||+||||||+++.|.+.. .+  +...+...-|.....+..    -.......+..|..+...       
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y   89 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY   89 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence            4688899999999999999999998652 12  111110000110011110    112233344444433210       


Q ss_pred             -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC--HHHHHhhhh-------HHHHHHHHHH
Q 024390          141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA--DNFIVTNRG-------GSLKEKLEAY  210 (268)
Q Consensus       141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~--~e~l~~Rl~-------~~~~~rl~~y  210 (268)
                       +-...+...+.+     +..+|+|.-+   ..+..+.+. .||.++++.+|  .+++.+|+.       +.+.+|+..+
T Consensus        90 Gt~~~~i~~~~~~-----g~~vi~~~~~---~g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~  160 (206)
T PRK14738         90 GVPKAPVRQALAS-----GRDVIVKVDV---QGAASIKRL-VPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATA  160 (206)
T ss_pred             cCCHHHHHHHHHc-----CCcEEEEcCH---HHHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence             011233334432     4557777543   233444443 47887777765  557889883       2445555544


Q ss_pred             HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390          211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHIN  253 (268)
Q Consensus       211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~  253 (268)
                      .......     ....++.||++.++++++++|.++|......
T Consensus       161 ~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~  198 (206)
T PRK14738        161 PLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIISAEKSR  198 (206)
T ss_pred             HHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence            4332211     1124778999999999999999999876443

>smart00072 GuKc Guanylate kinase homologues

Probab=99.17  E-value=1.5e-10  Score=97.86  Aligned_cols=158  Identities=11%  Similarity=0.048  Sum_probs=98.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh----CCCccchhHHHHhhcCCCChh----HHHHHHHHhccCcccHH--------H
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVRQDLSPRSSL----HKQIANAVNRGEVVSED--------I  141 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l----~~~~is~~dlir~~~~~~~~~----g~~i~~~l~~G~~ip~~--------~  141 (268)
                      ++.|+|+||+||||+|+++.|.+.+    ...+..+..-.|.....+.+.    .+.+.+.++.|+.++..        +
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            4569999999999999999999885    334444433333332223222    26677777777765532        2


Q ss_pred             HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEe-cCHHHHHhhh-------hHHHHHHHHHHHHH
Q 024390          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK-CADNFIVTNR-------GGSLKEKLEAYAEL  213 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld-~~~e~l~~Rl-------~~~~~~rl~~y~~~  213 (268)
                      -...+.+.+.     .++.+|+|+.|....|+...   ...-++||+. .+.+++.+|+       .+.+++|+....+.
T Consensus        82 ~~~~i~~~~~-----~~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~  153 (184)
T smart00072       82 SKETIRQVAE-----QGKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKE  153 (184)
T ss_pred             CHHHHHHHHH-----cCCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            2334555554     36789999988776665442   2223799998 5556788888       24567777654333


Q ss_pred             chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ..    .|...+  ..|. +.+.++..+++.++|...
T Consensus       154 ~~----~~~~fd--~~I~-n~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      154 AQ----EYHLFD--YVIV-NDDLEDAYEELKEILEAE  183 (184)
T ss_pred             Hh----hhccCC--EEEE-CcCHHHHHHHHHHHHHhc
Confidence            21    222111  3344 337999999999998753

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.16  E-value=4.8e-10  Score=105.69  Aligned_cols=164  Identities=13%  Similarity=0.113  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccH--------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSE--------------  139 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~--------------  139 (268)
                      ++|.|+|++||||||+++.|++ +|+++||+|.+.++...++......+.+.+..+     +.+..              
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999997 899999999999998877665544555444221     11111              


Q ss_pred             ----HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHH
Q 024390          140 ----DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKL  207 (268)
Q Consensus       140 ----~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl  207 (268)
                          .++-..+..++.+.. ...+..+|+.+.|.-.+.  .+  ...+|.+|++++|.++.++|+..       ....+ 
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~--~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r-  155 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GM--APLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR-  155 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cc--hhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH-
Confidence                111222222222110 012345666666642220  01  12568999999999999999833       11222 


Q ss_pred             HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390          208 EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHIN  253 (268)
Q Consensus       208 ~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~  253 (268)
                        +..+..  .+...+.. -+.|+.+.+++++..+|.+.+....+.
T Consensus       156 --i~~Q~~--~e~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~~~  196 (395)
T PRK03333        156 --IAAQAS--DEQRRAVA-DVWLDNSGTPDELVEAVRALWADRLLP  196 (395)
T ss_pred             --HHhcCC--hHHHHHhC-CEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence              222211  11111122 245777889999999999888765433

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.16  E-value=3.3e-10  Score=92.12  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----HHHHHHHHHHHHHcCCc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----~~~~~~ll~~~l~~~~~  155 (268)
                      .|+|.|+|||||||+|+.|++.++..+++.+++.....          ...+..|...+    +.....+........ .
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~   69 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKL-A   69 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHH-H
Confidence            37899999999999999999999999999877654311          01111122111    111111111111110 0


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhhhHH
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGS  202 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl~~~  202 (268)
                      ..+.++|+|.......+.+.+..+.  ..-.+|+|+++.+++.+|+..+
T Consensus        70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (150)
T cd02021          70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR  118 (150)
T ss_pred             hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence            1355788885444444555555542  3456999999999999999443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.16  E-value=8.4e-10  Score=94.74  Aligned_cols=159  Identities=14%  Similarity=0.173  Sum_probs=97.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc-----cc--------------
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS--------------  138 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-----ip--------------  138 (268)
                      ++.|.|.|.|||||||+++.+++ +|++.|++|+++|+...++.+....+.+.+....+     +.              
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57899999999999999999999 99999999999999888776666665554432111     00              


Q ss_pred             ----HHHHHHHHHHHHHcCCc-cCccEEEEcCCcCCHHHHHHHHhh---cCCCeEEEEecCHHHHHhhhhHH-------H
Q 024390          139 ----EDIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGS-------L  203 (268)
Q Consensus       139 ----~~~~~~ll~~~l~~~~~-~~~~g~IlDGfPr~~~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~~-------~  203 (268)
                          +.++-.++...+. ... ....++++-..|       .|.+.   ..+|.||.++||+++.++|+..+       .
T Consensus        81 ~~~Le~i~hPli~~~~~-~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~  152 (201)
T COG0237          81 RLKLEKILHPLIRAEIK-VVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDA  152 (201)
T ss_pred             HHHHHHhhhHHHHHHHH-HHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHH
Confidence                1122222223221 000 011223333333       23332   13789999999999999998432       2


Q ss_pred             HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      ..|+.   .+.. ..+-+...+  +.++++.++++..+++...+....
T Consensus       153 ~~~~~---~Q~~-~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~  194 (201)
T COG0237         153 EARLA---SQRD-LEEKLALAD--VVIDNDGSIENLLEQIEKLLKELL  194 (201)
T ss_pred             HHHHH---hcCC-HHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHH
Confidence            22221   1222 222222222  356888999999999998887543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.15  E-value=2.1e-09  Score=90.00  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCc-cch--hHHHHhhcCCCChh----HHHHHHHHhccCcc--cHH-----HHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISM--SSIVRQDLSPRSSL----HKQIANAVNRGEVV--SED-----IIFG  144 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~-is~--~dlir~~~~~~~~~----g~~i~~~l~~G~~i--p~~-----~~~~  144 (268)
                      ..++|+|++||||||+++.|+..++... +..  ...-+.....+...    ..........+...  ...     -...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            4689999999999999999999875421 110  00001111111111    11222222233221  000     0011


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHHHchHH
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELSKPL  217 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~l  217 (268)
                      .+...+.     .+..+|+||...   ....+.+......+|+|+++.+++.+|+..       .+.+|+..+.      
T Consensus        82 ~i~~~~~-----~g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~------  147 (179)
T TIGR02322        82 EIDQWLE-----AGDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSA------  147 (179)
T ss_pred             HHHHHHh-----cCCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHh------
Confidence            1222332     345688888621   222333333345799999999999999932       2344443221      


Q ss_pred             HHHHH-hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          218 EDYYQ-KQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       218 ~~~y~-~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                        .|. ....++.++++.+++++.++|.+.+..
T Consensus       148 --~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       148 --RFAAAPADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             --hcccccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence              121 223456678788999999999998863

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.14  E-value=5.9e-10  Score=92.61  Aligned_cols=151  Identities=10%  Similarity=0.065  Sum_probs=85.6

Q ss_pred             EcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHHHHHcCCcc
Q 024390           84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSKRLEDGYYR  156 (268)
Q Consensus        84 ~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~~l~~~~~~  156 (268)
                      +|++||||||+++.|++.+|..+++.+.+.....         +. .+..|....++       .+.........    .
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~   66 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IE-KMASGEPLNDDDRKPWLQALNDAAFAMQR----T   66 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hc-cccCCCCCChhhHHHHHHHHHHHHHHHHH----c
Confidence            5999999999999999999999998865421110         00 00111111110       11111111111    1


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHhCCcEEEEeCCC
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQKQKKLLEFQVGS  234 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~  234 (268)
                      .+..+|+-.+ ....+.+.+.+...+-.+|+|+|+++++.+|+..+-.  ...+.+..+...++..-.....++.||++.
T Consensus        67 ~~~~viv~s~-~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~  145 (163)
T PRK11545         67 NKVSLIVCSA-LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQ  145 (163)
T ss_pred             CCceEEEEec-chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCC
Confidence            2444555333 3333444455444455799999999999999954321  123334444322211101112478899999


Q ss_pred             CHHHHHHHHHHHHHh
Q 024390          235 APVETWQGLLTALHL  249 (268)
Q Consensus       235 s~eev~~~I~~~L~~  249 (268)
                      +++++..++...+..
T Consensus       146 ~~~~~~~~~~~~~~~  160 (163)
T PRK11545        146 PLEGVVASTIEVIKK  160 (163)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998854

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=6.5e-10  Score=90.53  Aligned_cols=155  Identities=13%  Similarity=0.120  Sum_probs=101.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHH---HHHcC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSK---RLEDG  153 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~---~l~~~  153 (268)
                      .+-.|+++|+.||||||+++.|++++++.+++.||+-..+          =.+-|.+|..+.|+-....|.+   .+...
T Consensus        11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD~DR~pWL~~i~~~~~~~   80 (191)
T KOG3354|consen   11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLNDDDRWPWLKKIAVELRKA   80 (191)
T ss_pred             CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence            3447999999999999999999999999999999876443          1345677877766544333321   11111


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhhc-------CC---CeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHc
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQLA-------EI---DLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELS  214 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~-------~~---d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~  214 (268)
                       ...+.++|+-.........+.+.+..       .+   -.+|+|.++.|++.+|+..         .++.+|+..+--.
T Consensus        81 -l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p~  159 (191)
T KOG3354|consen   81 -LASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAPD  159 (191)
T ss_pred             -hhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCCC
Confidence             12478899977654444555555421       12   2599999999999999922         2233332221110


Q ss_pred             hHHHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          215 KPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       215 ~~l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                             .+...++.|++. .++|++...|.+.+..
T Consensus       160 -------~~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  160 -------ADEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             -------CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence                   012257888876 8999999999887754

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.12  E-value=9.4e-10  Score=94.18  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=95.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccH---------------
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE---------------  139 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~---------------  139 (268)
                      |.|.|++||||||+++.|++ +|+.+++.|++.++...++.+..+.+.+.+.      +|. +..               
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHH
Confidence            78999999999999999976 6999999999999987777766666665442      222 111               


Q ss_pred             ---HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHHHHHH
Q 024390          140 ---DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLKEKLE  208 (268)
Q Consensus       140 ---~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~~rl~  208 (268)
                         +++..++.+.+.+.. ......+++-..|.-.+. . +  ...+|.+|++++|.++.++|+.       +....|+.
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~-~-~--~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~  155 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET-D-A--YTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA  155 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc-C-c--hhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence               122222322221100 001223444344542210 0 0  1257999999999999999983       34445543


Q ss_pred             HHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          209 AYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       209 ~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .   +. +..+. ..... +.|+.+.+++++..+|.+.+.
T Consensus       156 ~---Q~-~~~~k-~~~aD-~vI~N~~~~~~l~~~v~~l~~  189 (196)
T PRK14732        156 S---QL-PITEK-LKRAD-YIVRNDGNREGLKEECKILYS  189 (196)
T ss_pred             H---cC-CHHHH-HHhCC-EEEECCCCHHHHHHHHHHHHH
Confidence            3   22 22222 22222 346668899999999998764

>PRK06547 hypothetical protein; Provisional

Probab=99.12  E-value=2.4e-10  Score=95.85  Aligned_cols=142  Identities=10%  Similarity=0.018  Sum_probs=80.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHH-HHhccCcccHHHHHHHHHHHHHcC-
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN-AVNRGEVVSEDIIFGLLSKRLEDG-  153 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~-~l~~G~~ip~~~~~~ll~~~l~~~-  153 (268)
                      .+.++|+|.|++||||||+++.|++.++++.++++++...... -....+.+.+ .+..|+...-.  ........... 
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~~   89 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDWV   89 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceec--CCCCCCCCCCcE
Confidence            4677899999999999999999999999999999988754211 0111122222 23333221000  00000000000 


Q ss_pred             CccCccEEEEcCCcCCHHH-HHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHH
Q 024390          154 YYRGEIGFILDGLPRSRIQ-AEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~q-a~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~  222 (268)
                      .......+|++|..-...+ .+.+++ ....++||+++|.+++.+|+..+-.. +..|...+.+.++.|-
T Consensus        90 ~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~-~~~~~~~w~~~e~~~~  157 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARDPD-YAPHWEMWAAQEERHF  157 (172)
T ss_pred             EeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch-hhHHHHHHHHHHHHHH
Confidence            0112456888986322111 111211 12228999999999999999543222 5566666666666663

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.12  E-value=9.6e-10  Score=106.23  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      .++++|.|.|++||||||+|+.|++++|+.+++.|+++|..
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            47789999999999999999999999999999999999874

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.11  E-value=1.4e-09  Score=93.63  Aligned_cols=163  Identities=12%  Similarity=0.109  Sum_probs=95.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-----ccCcccH------------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-----RGEVVSE------------  139 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-----~G~~ip~------------  139 (268)
                      .++.|.|.|++||||||+++.|++.+|+++++.|.+.++...+ .+..+.+.+.+.     +|. ++.            
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~   82 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE   82 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence            3478999999999999999999999999999999999888654 334344443331     221 211            


Q ss_pred             ------HHHHHHHHHHHHcCCc-cCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHH
Q 024390          140 ------DIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE  205 (268)
Q Consensus       140 ------~~~~~ll~~~l~~~~~-~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~  205 (268)
                            +++-..+.+++.+... ....-+|+| .|.-.+. . +.....+|.+|++.||.++.++|+.+       ....
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~-~-~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~  159 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPY-N-FRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVA  159 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhc-c-CchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence                  1222222222221100 112345555 3332110 0 00012478999999999999999832       3333


Q ss_pred             HHHHHHHHchHHHHHHHhCCcEEEEeCCC-CHHHHHHHHHHHHHhh
Q 024390          206 KLEAYAELSKPLEDYYQKQKKLLEFQVGS-APVETWQGLLTALHLQ  250 (268)
Q Consensus       206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~-s~eev~~~I~~~L~~~  250 (268)
                      |+.   .|.. ..+.-...+  ++|+.+. +.+++.++|...+...
T Consensus       160 ri~---~Q~~-~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        160 FIN---LQIS-DKEREKIAD--FVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             HHH---hCCC-HHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence            332   2222 112111122  4567677 9999999999988764

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.11  E-value=1e-09  Score=92.37  Aligned_cols=114  Identities=21%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----ccc----------------
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVS----------------  138 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip----------------  138 (268)
                      +|.|.|+|||||||+++.|++ +|++++++|++.++...++......+.+.+..+.     .+.                
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            388999999999999999999 9999999999999988877777777776653211     111                


Q ss_pred             --HHHHHHHHHHHHHcCC--ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          139 --EDIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       139 --~~~~~~ll~~~l~~~~--~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                        ++++..++..++.+..  .....-+|+| .|.-.+.  .+.  ..+|.+|+++||+++.++|+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~--~~~--~~~D~vv~V~a~~~~ri~Rl  139 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFET--GLE--KLVDRVIVVDAPPEIQIERL  139 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcC--CcH--HhCCeEEEEECCHHHHHHHH
Confidence              1222233333332210  0111234455 3332110  011  25799999999999999998

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.09  E-value=3e-10  Score=91.40  Aligned_cols=102  Identities=18%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~  159 (268)
                      +|+|.|+|||||||+|+.|++.+|+++++.+.+-.+..      .........      ...+...+.+.+.+.  ....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~~------~~~i~~~l~~~~~~~--~~~~   66 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVAA------IPEVRKALDERQREL--AKKP   66 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhcc------cHhHHHHHHHHHHHH--hhCC
Confidence            48999999999999999999999999999984322211      111110000      001112222222221  1245


Q ss_pred             EEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH
Q 024390          160 GFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG  201 (268)
Q Consensus       160 g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~  201 (268)
                      +||+||......    +  ....+++|+|++|++..++|+.+
T Consensus        67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~  102 (147)
T cd02020          67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAK  102 (147)
T ss_pred             CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHH
Confidence            799998532110    0  13478999999999999999844

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.08  E-value=4e-09  Score=89.33  Aligned_cols=151  Identities=15%  Similarity=0.095  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-----
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-----  154 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-----  154 (268)
                      .|+|.|++||||||+++.|++++|+.++.-..- ..  ....++   ++..+.+...........++..+.....     
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~-~~--~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE-PD--VEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccccccc-cc--CCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            489999999999999999999887654322100 00  001111   2222221100000011111112221110     


Q ss_pred             ccCccEEEEcCCcCCHH--------H-------HH----HHHh----hcCCCeEEEEecCHHHHHhhhhHHHHH----HH
Q 024390          155 YRGEIGFILDGLPRSRI--------Q-------AE----ILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKE----KL  207 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~--------q-------a~----~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~----rl  207 (268)
                      ...+..+|+|.+|.+..        +       .+    .++.    ...||++|+|+++++++.+|+.++-..    .-
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~  154 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQGIP  154 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhcCC
Confidence            12466789998775421        0       11    1111    136999999999999999998432211    11


Q ss_pred             HHHHHHchH-HHHHHHh----CCcEEEEeCCC-CH
Q 024390          208 EAYAELSKP-LEDYYQK----QKKLLEFQVGS-AP  236 (268)
Q Consensus       208 ~~y~~~~~~-l~~~y~~----~~~l~~Ida~~-s~  236 (268)
                      ..|.+.... ...++..    ...++.||++. ++
T Consensus       155 ~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~  189 (193)
T cd01673         155 LDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADI  189 (193)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCEEEEECCcccc
Confidence            123332222 2333332    24688899876 44

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.07  E-value=2e-09  Score=89.95  Aligned_cols=159  Identities=18%  Similarity=0.111  Sum_probs=84.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHH--HHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII--FGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~--~~ll~~~  149 (268)
                      ++..|+|+|+|||||||+++.|+..+.     +.+++.+.+ ++....+......-+          +...  ...+...
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~a~~   71 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR----------DTNIRRIGFVANL   71 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH----------HHHHHHHHHHHHH
Confidence            567899999999999999999999873     556776543 333221110000000          0000  1112222


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHH--HHHHHchHHHHHHHhC-Cc
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLE--AYAELSKPLEDYYQKQ-KK  226 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--~y~~~~~~l~~~y~~~-~~  226 (268)
                      +..    .+..+++|+.-......+.+......-.+|+|+||.+++.+|....+-.+..  ...........+|... ..
T Consensus        72 ~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad  147 (175)
T PRK00889         72 LTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPE  147 (175)
T ss_pred             HHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCc
Confidence            221    2455677765222333344444433446999999999999996321111110  0000000112333321 22


Q ss_pred             EEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          227 LLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       227 l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +...+.+.+++++.++|.+.|...
T Consensus       148 ~~i~~~~~~~~~~~~~i~~~l~~~  171 (175)
T PRK00889        148 VECRTDLESLEESVDKVLQKLEEL  171 (175)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHc
Confidence            333334678999999999999753

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.06  E-value=9.7e-09  Score=89.74  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=35.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~  115 (268)
                      .++|.|.|++||||||+|+.|++++|+.+++.|+++|.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            47899999999999999999999999999999998876

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.05  E-value=2.2e-09  Score=105.42  Aligned_cols=161  Identities=16%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC------CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH--HH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LS  147 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~------~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l--l~  147 (268)
                      +++..|+|+|+|||||||+|+.|+++++.      .+++. |.+|+.+..+......-+          +.....+  +.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~~f~~~er----------~~~~~~l~~~a  458 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSELGFSKEDR----------DLNILRIGFVA  458 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCCCCCHHHH----------HHHHHHHHHHH
Confidence            45678999999999999999999999985      67776 455665432211100000          0011111  11


Q ss_pred             HHHHcCCccCccEEEEcC-CcCCHHHHHHHHhhcC-CC-eEEEEecCHHHHHhhhhHHH--HHHHHHHHHHchHHHHHHH
Q 024390          148 KRLEDGYYRGEIGFILDG-LPRSRIQAEILDQLAE-ID-LVVNFKCADNFIVTNRGGSL--KEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       148 ~~l~~~~~~~~~g~IlDG-fPr~~~qa~~l~~~~~-~d-~vV~Ld~~~e~l~~Rl~~~~--~~rl~~y~~~~~~l~~~y~  222 (268)
                      ..+.    ..+.++|+|. +|......+..+.+.. .. ++|||++|.+++.+|....+  +.+....++.......||.
T Consensus       459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~  534 (568)
T PRK05537        459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEP  534 (568)
T ss_pred             HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccC
Confidence            1121    2467788884 4543222222221211 23 58999999999999973211  1111112222222234553


Q ss_pred             hCCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          223 KQKKLLEFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       223 ~~~~l~~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      ...--+.||++ .+++++.++|.+.|...+
T Consensus       535 p~~Adl~IDt~~~s~~eiv~~Il~~L~~~g  564 (568)
T PRK05537        535 PANPELVIDTTNVTPDECAHKILLYLEEKG  564 (568)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            22223567765 689999999999987654

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.05  E-value=2.7e-09  Score=90.17  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----cccH--------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE--------------  139 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip~--------------  139 (268)
                      |.|.|.|..||||||+++.|++ +|++++|+|.+.++...++.+....+.+.+...-     .+..              
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5799999999999999999999 9999999999999998888887777776654221     1221              


Q ss_pred             ----HHHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH
Q 024390          140 ----DIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG  201 (268)
Q Consensus       140 ----~~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~  201 (268)
                          +++..++    .+++...  ....-+++| .|.-.+.  .+  ...+|.+|++.||.++.++|+.+
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~--~~~~~~v~e-~pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~  142 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRN--KSEKVVVVE-IPLLFES--GL--EKLCDEVIVVYAPEEIRIKRLME  142 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--HSTSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhc--cCCCEEEEE-cchhhhh--hH--hhhhceEEEEECCHHHHHHHHHh
Confidence                1222222    2223222  122455665 3431110  01  13589999999999999999943

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00017 cmk cytidylate kinase

Probab=99.04  E-value=3.6e-09  Score=91.99  Aligned_cols=39  Identities=18%  Similarity=0.159  Sum_probs=36.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      .+.|.|.||+||||||+++.|++++++.+++.|++.|..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            468999999999999999999999999999999988664

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.00  E-value=2.6e-08  Score=85.06  Aligned_cols=166  Identities=10%  Similarity=0.071  Sum_probs=91.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC---CCh----hHHHHHHHHhccCcccH-----HH---
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVSE-----DI---  141 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~---~~~----~g~~i~~~l~~G~~ip~-----~~---  141 (268)
                      .+..|+|+|++||||||+++.|+..++..++.....-|+....   +.+    ..+.....+..|..+..     +.   
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            5678999999999999999999998763232222221211000   000    12333334444432211     10   


Q ss_pred             HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHh-hcCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHH
Q 024390          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAEL  213 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~-~~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~  213 (268)
                      ....+...+..     +.-+|+|.-+..   ...+.+ +..+-.++++.++.+++.+|+       ++.+++|+..+...
T Consensus        84 ~~~~i~~~l~~-----g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~  155 (205)
T PRK00300         84 PRSPVEEALAA-----GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREE  155 (205)
T ss_pred             cHHHHHHHHHc-----CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            11223333332     455777764322   223322 233333555567788999998       34677788777654


Q ss_pred             chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhcccccCC
Q 024390          214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYS  257 (268)
Q Consensus       214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~~~~~  257 (268)
                      ..    ++...+.++ +  +.+++++.+++..++....+.++..
T Consensus       156 ~~----~~~~~d~vi-~--n~~~e~~~~~l~~il~~~~~~~~~~  192 (205)
T PRK00300        156 IA----HASEYDYVI-V--NDDLDTALEELKAIIRAERLRRSRQ  192 (205)
T ss_pred             HH----hHHhCCEEE-E--CCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            32    233334333 3  4489999999999999875544433

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.98  E-value=7.5e-09  Score=103.62  Aligned_cols=165  Identities=18%  Similarity=0.104  Sum_probs=94.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh----cCCCChhH--HHHHHHHh-------------ccCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD----LSPRSSLH--KQIANAVN-------------RGEVV  137 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~----~~~~~~~g--~~i~~~l~-------------~G~~i  137 (268)
                      +.++|.|.||+||||||+++.||+++|+.|+++|.++|..    +..+..+.  ..+.+.+.             +|+.+
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV  520 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence            4568999999999999999999999999999999999886    12221111  11112111             12111


Q ss_pred             cHH-----------------HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390          138 SED-----------------IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       138 p~~-----------------~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      ..+                 .+.+.+.++..+.  ....++|+||-  ..-.    .-+.+.++-|||+++.++..+|.-
T Consensus       521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~--~~~~~~v~eGR--digt----vv~p~a~~kifl~a~~~~Ra~Rr~  592 (661)
T PRK11860        521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSF--RRLPGLVADGR--DMGT----VIFPDAALKVFLTASAEARAERRY  592 (661)
T ss_pred             hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHH--hhCCCEEEECC--CCcc----EECCCCCeEEEEECChhHHHHHHH
Confidence            111                 1122222222221  12346888873  1000    001357899999999999998874


Q ss_pred             HHHHHHH--HHHHHHchHH--HHHHHh---------CCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          201 GSLKEKL--EAYAELSKPL--EDYYQK---------QKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       201 ~~~~~rl--~~y~~~~~~l--~~~y~~---------~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                      ++++++-  ..|++....+  .++-+.         ..--+.||.+ .+++|+++.|.+.+..
T Consensus       593 ~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        593 KQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence            4332211  0122221111  111111         1234678865 6999999999999864

>PRK12338 hypothetical protein; Provisional

Probab=98.97  E-value=2.6e-08  Score=90.94  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC--Chh----HHHHHH---HHhccCcc-c--------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR--SSL----HKQIAN---AVNRGEVV-S--------  138 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~--~~~----g~~i~~---~l~~G~~i-p--------  138 (268)
                      ++..|+|.|+|||||||+|+.||+++|+.++..+|.+|+....-  .++    .....+   .+...+.. +        
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g   82 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG   82 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence            45789999999999999999999999999997788888865421  100    111001   11111111 1        


Q ss_pred             ----HHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhc-CCCeEEEEecCHHHHHhhhhHHHH-----HHHH
Q 024390          139 ----EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGGSLK-----EKLE  208 (268)
Q Consensus       139 ----~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~-~~d~vV~Ld~~~e~l~~Rl~~~~~-----~rl~  208 (268)
                          .+.+...+..-+... ...+..+|++|..-...-........ .+-.++.|..+++...+|+..+.+     .+..
T Consensus        83 f~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l  161 (319)
T PRK12338         83 FEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQL  161 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhh
Confidence                122222222223221 12467899999754433222111001 123466666888899999854221     1222


Q ss_pred             HHHHHchHHHHHHHhC---CcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          209 AYAELSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       209 ~y~~~~~~l~~~y~~~---~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      .|-+.+..+-+|+.+.   ..+..+ .+.+.++..+.|.+.|....
T Consensus       162 ~~f~~Ir~Iq~~l~~~A~e~~VpvI-~N~did~Tv~~ile~I~e~s  206 (319)
T PRK12338        162 EYFRENRIIHDHLVEQAREHNVPVI-KNDDIDCTVKKMLSYIREVC  206 (319)
T ss_pred             hChHHHHHHHHHHHHhHhhCCCcee-CCCcHHHHHHHHHHHHHhhe
Confidence            3333444455655432   233344 47899999999999998664

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.97  E-value=8.2e-09  Score=104.18  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      ++|.|.|||||||||+|+.||+++|+.++++|.++|..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            47999999999999999999999999999999988874

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.94  E-value=1.9e-08  Score=86.49  Aligned_cols=167  Identities=13%  Similarity=0.136  Sum_probs=86.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      .++.+|.|.|++||||||+++.|++.++   +.+++.++........  +...............+.+.+.+.|......
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~   81 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG   81 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence            4678999999999999999999999983   3456777655432100  0000000000011111222222333221111


Q ss_pred             CC-------------------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH--------HHH
Q 024390          153 GY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS--------LKE  205 (268)
Q Consensus       153 ~~-------------------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~--------~~~  205 (268)
                      ..                   .....-+|+||..--..  ..+.  ..+|.+|++++|.++.++|...+        ..+
T Consensus        82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~  157 (209)
T PRK05480         82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLES  157 (209)
T ss_pred             CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhcchhcCCCHHH
Confidence            00                   01233577888643110  1111  24689999999999999986221        112


Q ss_pred             HHHHHHHHchHHHHHHHh---CCcEEEEeCC----CCHHHHHHHHHHHHH
Q 024390          206 KLEAYAELSKPLEDYYQK---QKKLLEFQVG----SAPVETWQGLLTALH  248 (268)
Q Consensus       206 rl~~y~~~~~~l~~~y~~---~~~l~~Ida~----~s~eev~~~I~~~L~  248 (268)
                      -...|.++..+....|.+   ...-+.|+.+    ++.+++.++|...+.
T Consensus       158 ~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~  207 (209)
T PRK05480        158 VINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE  207 (209)
T ss_pred             HHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence            223444444442222211   1223445433    368888888887654

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.90  E-value=3.5e-08  Score=83.13  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=84.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHHHHHHH--HH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGL--LS  147 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~~~~~l--l~  147 (268)
                      .++..|+|+|+|||||||+++.|+..+   |  ..+++.+ -+++.+..+.... ...           ......+  +.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~~-----------~~~~~~~~~~~   83 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEEDR-----------KENIRRIGEVA   83 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHHH-----------HHHHHHHHHHH
Confidence            356899999999999999999999987   2  3455543 4444322111000 000           0011111  11


Q ss_pred             HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHh
Q 024390          148 KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       148 ~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~  223 (268)
                      ..+.    ..+..+|+|..-....+.+.+....  .+-++|+|++|.+++.+|....+-.  +...+.. ...+...|..
T Consensus        84 ~~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~-l~~~~~~y~~  158 (184)
T TIGR00455        84 KLFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKG-FTGIDSPYEA  158 (184)
T ss_pred             HHHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccC-cccccCCCCC
Confidence            1121    2467788887544455555555442  2346899999999999995211100  0000000 1112222332


Q ss_pred             -CCcEEEEeCC-CCHHHHHHHHHHHH
Q 024390          224 -QKKLLEFQVG-SAPVETWQGLLTAL  247 (268)
Q Consensus       224 -~~~l~~Ida~-~s~eev~~~I~~~L  247 (268)
                       ..--+.||.+ .+++++.++|.+.|
T Consensus       159 p~~adl~Idt~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       159 PENPEVVLDTDQNDREECVGQIIEKL  184 (184)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHHhC
Confidence             2334677754 68999999887653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.89  E-value=1.4e-08  Score=103.67  Aligned_cols=42  Identities=19%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      |..+++|.|.|||||||||+|+.||+++|+.++++|.++|..
T Consensus        31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            455578999999999999999999999999999999999886

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.88  E-value=4.7e-08  Score=83.52  Aligned_cols=159  Identities=14%  Similarity=0.152  Sum_probs=83.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SK  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~  148 (268)
                      .++..|+|+|++||||||+++.|+..+     +..+++.+++ +..+.....+       .. .  -..+....+.  ..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~-~~~~~~~~~~-------~~-~--~~~~~~~~l~~~a~   90 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV-RHGLCSDLGF-------SD-A--DRKENIRRVGEVAK   90 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH-HhhhhhcCCc-------Cc-c--cHHHHHHHHHHHHH
Confidence            467789999999999999999999986     2455555443 3322110000       00 0  0011122221  11


Q ss_pred             HHHcCCccCccEEEEcCCcC-CHHHHHHHHhh-cCCCe-EEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHh
Q 024390          149 RLEDGYYRGEIGFILDGLPR-SRIQAEILDQL-AEIDL-VVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr-~~~qa~~l~~~-~~~d~-vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~  223 (268)
                      .+..    .+ ..|+..|.. ...+.+.+... ...++ +|||++|.+++.+|....+..  +...+.. .......|..
T Consensus        91 ~~~~----~G-~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~-l~~~r~~Y~~  164 (198)
T PRK03846         91 LMVD----AG-LVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRN-FTGIDSVYEA  164 (198)
T ss_pred             HHhh----CC-CEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccC-cccccccCCC
Confidence            1111    12 344455544 23444445443 23345 799999999999994211111  0000000 1111222552


Q ss_pred             CC-cEEEEeC-CCCHHHHHHHHHHHHHhhc
Q 024390          224 QK-KLLEFQV-GSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       224 ~~-~l~~Ida-~~s~eev~~~I~~~L~~~~  251 (268)
                      .. --+.||+ +.+++++.++|.+.+....
T Consensus       165 p~~ad~~Idt~~~~~~~vv~~Il~~l~~~~  194 (198)
T PRK03846        165 PESPEIHLDTGEQLVTNLVEQLLDYLRQRD  194 (198)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            11 2246774 6799999999999997643

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=98.87  E-value=1.1e-07  Score=80.75  Aligned_cols=159  Identities=15%  Similarity=0.220  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH-----HHH----------H
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-----DII----------F  143 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~-----~~~----------~  143 (268)
                      ..|-+.|..||||||+++.+. .+|++.||.|.+.|+...++++-+..+.+.+...-+.++     +.+          .
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            467899999999999999998 899999999999999999999999888887754322221     110          0


Q ss_pred             HH--------HH----HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHH
Q 024390          144 GL--------LS----KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLK  204 (268)
Q Consensus       144 ~l--------l~----~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~  204 (268)
                      ++        +.    +++......+..-+|+| .|.-.+-  .+.+  .+..+|...|+.+.-++|+.+       ..+
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe  155 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK--ICHKTVVVTCDEELQLERLVERDELSEEDAE  155 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh--heeeEEEEEECcHHHHHHHHHhccccHHHHH
Confidence            11        11    11111111233444555 5543221  1222  344578888999999999833       333


Q ss_pred             HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .|+..   | -|+.+.-+.  .-+++|.+.+++++.++|...+..
T Consensus       156 ~Rl~s---Q-mp~~~k~~~--a~~Vi~Nng~~~~l~~qv~~v~~~  194 (225)
T KOG3220|consen  156 NRLQS---Q-MPLEKKCEL--ADVVIDNNGSLEDLYEQVEKVLAL  194 (225)
T ss_pred             HHHHh---c-CCHHHHHHh--hheeecCCCChHHHHHHHHHHHHH
Confidence            44422   1 122222222  135678899999999999988764

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.86  E-value=2e-08  Score=83.97  Aligned_cols=156  Identities=9%  Similarity=0.025  Sum_probs=85.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC---Ch----hHHHHHHHHhccCcccHH--------HH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR---SS----LHKQIANAVNRGEVVSED--------II  142 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~---~~----~g~~i~~~l~~G~~ip~~--------~~  142 (268)
                      +..|+|+||+||||||+++.|++.++..++......|+.....   ..    ....+...+..|+.+...        ..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            4579999999999999999999987655555443333322110   00    012233334444432210        11


Q ss_pred             HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHH-HhhcCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHHc
Q 024390          143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEIL-DQLAEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELS  214 (268)
Q Consensus       143 ~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l-~~~~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~~  214 (268)
                      ...+...+.+     +..+|+|.-   ...+..+ +.+..+..++++..+.+.+.+|+       ++.+++|+..+..+.
T Consensus        81 ~~~i~~~~~~-----g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~  152 (180)
T TIGR03263        81 KSPVEEALAA-----GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEI  152 (180)
T ss_pred             HHHHHHHHHC-----CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            2334444433     456888853   2223333 33333344555577788999988       235667776554332


Q ss_pred             hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .     +.+.-.. .|.. .+.+++.+++.+.+.
T Consensus       153 ~-----~~~~~d~-~i~n-~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       153 A-----HADEFDY-VIVN-DDLEKAVEELKSIIL  179 (180)
T ss_pred             h-----ccccCcE-EEEC-CCHHHHHHHHHHHHh
Confidence            1     1111122 2332 478999999998774

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.83  E-value=3.8e-08  Score=95.61  Aligned_cols=98  Identities=9%  Similarity=-0.026  Sum_probs=70.2

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      +.++..|+++|+|||||||+|+.+++..|+.+|+.|++- .                       .+.....+...|..  
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~--  419 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ--  419 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence            356778999999999999999999999999999997651 1                       01122334445543  


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhH
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGG  201 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~  201 (268)
                         +..+|+|..-.+..+.+.+.+    ..-+-.+|+|++|.+++.+|+..
T Consensus       420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~  467 (526)
T TIGR01663       420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAF  467 (526)
T ss_pred             ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHh
Confidence               567999986555555444433    23344689999999999999843

Note that the EC number for the kinase function is: 2.7.1.78

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.81  E-value=6.4e-07  Score=79.54  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccc---hhHHHHhhcCC----------CChhHHHHHHHHhc--cCcccHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS---MSSIVRQDLSP----------RSSLHKQIANAVNR--GEVVSED  140 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is---~~dlir~~~~~----------~~~~g~~i~~~l~~--G~~ip~~  140 (268)
                      .+.+.|++.|+.|||||++|+.||+++|+.|+-   +|+++-.....          ..---..+..+..+  |+ ....
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-lsa~  147 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-LSAA  147 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc-HHHH
Confidence            366789999999999999999999999997754   55544222110          00000011111111  11 1111


Q ss_pred             HHHHHH-------HHHHHcCCccCccEEEEcCCcCCH-HHHHHHH----------------------hhcCCCeEEEEec
Q 024390          141 IIFGLL-------SKRLEDGYYRGEIGFILDGLPRSR-IQAEILD----------------------QLAEIDLVVNFKC  190 (268)
Q Consensus       141 ~~~~ll-------~~~l~~~~~~~~~g~IlDGfPr~~-~qa~~l~----------------------~~~~~d~vV~Ld~  190 (268)
                      +-..+.       .++++.. ...++|+|++..|.+. .-++.|.                      ++..|.+||+|++
T Consensus       148 ~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~  226 (393)
T KOG3877|consen  148 MQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT  226 (393)
T ss_pred             HHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence            111111       1222221 2478999999877652 1222221                      1247999999999


Q ss_pred             CHHHHHhhhhHH--------H-HHHHH----HHHHHchHHHHHHHhCCcEEEEeCC--CCHHHHHHHHHHH
Q 024390          191 ADNFIVTNRGGS--------L-KEKLE----AYAELSKPLEDYYQKQKKLLEFQVG--SAPVETWQGLLTA  246 (268)
Q Consensus       191 ~~e~l~~Rl~~~--------~-~~rl~----~y~~~~~~l~~~y~~~~~l~~Ida~--~s~eev~~~I~~~  246 (268)
                      |...+.+|+..+        + +..++    .|+++   ...-|+.+..++.-|.+  ++-+.|++.|+..
T Consensus       227 Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl  294 (393)
T KOG3877|consen  227 PVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIERL  294 (393)
T ss_pred             CcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence            999999998211        1 11222    23332   12234545566666643  4566777777643

>TIGR00235 udk uridine kinase

Probab=98.81  E-value=6.9e-08  Score=82.98  Aligned_cols=39  Identities=18%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV  113 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dli  113 (268)
                      |.++..|.|.|++||||||+++.|+..++   +.+++.++.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            45788999999999999999999999875   4566776543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.80  E-value=1.3e-07  Score=80.23  Aligned_cols=158  Identities=8%  Similarity=-0.019  Sum_probs=87.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC---CC----hhHHHHHHHHhccCcccHH--------H
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RS----SLHKQIANAVNRGEVVSED--------I  141 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~---~~----~~g~~i~~~l~~G~~ip~~--------~  141 (268)
                      +++.|+|+||+||||||+++.|.+++.-.+.+....=|..-+.   +.    -..+.....+..|+.+...        +
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            5778999999999999999999988632233322111211000   10    0123344555555443210        1


Q ss_pred             HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCC--eEEEEecC-HHHHHhhh-------hHHHHHHHHHHH
Q 024390          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEID--LVVNFKCA-DNFIVTNR-------GGSLKEKLEAYA  211 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d--~vV~Ld~~-~e~l~~Rl-------~~~~~~rl~~y~  211 (268)
                      -.+-+...+.     .+..+|+|.-+....+   +... .++  .+||+..| .+++.+|+       ++.+++|+....
T Consensus        83 ~~~~i~~~~~-----~g~~~i~d~~~~g~~~---l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~  153 (186)
T PRK14737         83 PKAFIEDAFK-----EGRSAIMDIDVQGAKI---IKEK-FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI  153 (186)
T ss_pred             cHHHHHHHHH-----cCCeEEEEcCHHHHHH---HHHh-CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            1222333333     3567788865433333   3332 233  68888885 58888888       345777776533


Q ss_pred             HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .+.    + +...-- ..|+.+ +.++..++|.++|..+
T Consensus       154 ~e~----~-~~~~~D-~vI~N~-dle~a~~ql~~ii~~~  185 (186)
T PRK14737        154 IEL----D-EANEFD-YKIIND-DLEDAIADLEAIICGK  185 (186)
T ss_pred             HHH----h-hhccCC-EEEECc-CHHHHHHHHHHHHhcC
Confidence            221    1 111112 334434 8999999999988754

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.80  E-value=7.5e-08  Score=82.46  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ..+.|+|.|+.|+||||+|+.||+++|..++
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            3578999999999999999999999997553

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.79  E-value=1.8e-07  Score=84.59  Aligned_cols=142  Identities=14%  Similarity=0.064  Sum_probs=78.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      .+..|+|.|++||||||+++.|+ ..|+..++-                           +|..++..++........ .
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~-~   55 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGG-I   55 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCC-C
Confidence            34579999999999999999996 457655422                           112222222221111100 1


Q ss_pred             CccEEEEcCCcCCH--HHHHHHHhh---cCCCeEEEEecCHHHHHhhhhHHH--------HHHHHHHHHHchHHHHHHHh
Q 024390          157 GEIGFILDGLPRSR--IQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       157 ~~~g~IlDGfPr~~--~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~y~~  223 (268)
                      ..-.+++|-.-...  ...+.+..+   .....+|||+++.+++++|+.+.-        ....+...+....+..+++.
T Consensus        56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~  135 (288)
T PRK05416         56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRER  135 (288)
T ss_pred             CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHh
Confidence            23356677432211  111222222   223368999999999999984311        01122233333334444443


Q ss_pred             CCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          224 QKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       224 ~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                      .+  +.||++ .+++++.++|.+.+..
T Consensus       136 AD--ivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        136 AD--LVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             CC--EEEECCCCCHHHHHHHHHHHHhc
Confidence            33  456754 6999999999998854

>PRK06696 uridine kinase; Validated

Probab=98.75  E-value=5.9e-08  Score=84.45  Aligned_cols=39  Identities=23%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVR  114 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~--~is~~dlir  114 (268)
                      .++.+|.|.|++||||||+|+.|++.+   |..  ++++|++..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            467899999999999999999999998   443  456777664

>PRK07667 uridine kinase; Provisional

Probab=98.75  E-value=2.5e-08  Score=84.98  Aligned_cols=139  Identities=9%  Similarity=0.074  Sum_probs=75.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcC----CCChh-------------HHHHHHHHhccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLS----PRSSL-------------HKQIANAVNRGE  135 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~----~~~~~-------------g~~i~~~l~~G~  135 (268)
                      ..+|.|.|+|||||||+|+.|++.++     ...+++++.+.....    ...+.             ...+-..+..|+
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~   96 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNET   96 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence            37899999999999999999999873     457888887654321    01100             001111111221


Q ss_pred             cccHHHHHHHHHHHHHcC-CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHc
Q 024390          136 VVSEDIIFGLLSKRLEDG-YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELS  214 (268)
Q Consensus       136 ~ip~~~~~~ll~~~l~~~-~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~  214 (268)
                      .+.-.............. ......-+|+||.-.  .. ..+.  ...|.+|+++||+++.++|+.++-..-.+.|+..+
T Consensus        97 ~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l--~~-~~~~--~~~d~~v~V~~~~~~~~~R~~~r~~~~~~~~~~r~  171 (193)
T PRK07667         97 KLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFL--QR-KEWR--DFFHYMVYLDCPRETRFLRESEETQKNLSKFKNRY  171 (193)
T ss_pred             eEEEeeeccccccccccceecCCCCEEEEEehhh--hh-hhHH--hhceEEEEEECCHHHHHHHHhcccHhHHHHHHHHh
Confidence            110000000000000000 011235678888532  11 1122  24699999999999999999655444556666666


Q ss_pred             hHHHHHH
Q 024390          215 KPLEDYY  221 (268)
Q Consensus       215 ~~l~~~y  221 (268)
                      .+.++.|
T Consensus       172 ~~a~~~y  178 (193)
T PRK07667        172 WKAEDYY  178 (193)
T ss_pred             HHHHHHH
Confidence            6666666

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.75  E-value=6.5e-07  Score=81.17  Aligned_cols=167  Identities=13%  Similarity=0.087  Sum_probs=87.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC------ChhHHHHHHHHh-------------ccCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR------SSLHKQIANAVN-------------RGEVV  137 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~------~~~g~~i~~~l~-------------~G~~i  137 (268)
                      +++.|+|.|++||||||+|..||+++|..++-..|.+|+.+..-      ..+.........             .|-..
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~  170 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFER  170 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHH
Confidence            56889999999999999999999999998543356666433210      001111111111             11111


Q ss_pred             cHHH----HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCH-HHHHhhhhHHHH------HH
Q 024390          138 SEDI----IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCAD-NFIVTNRGGSLK------EK  206 (268)
Q Consensus       138 p~~~----~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~-e~l~~Rl~~~~~------~r  206 (268)
                      +.+.    +..++...+.     .+...|+.|..-.....+.+.....-.+.+++.+++ +...+|+..+.+      ++
T Consensus       171 ~~~~v~~gi~~~I~~~~~-----~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~  245 (301)
T PRK04220        171 HVEPVSVGVEAVIERALK-----EGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRRPAER  245 (301)
T ss_pred             HHHHHHHHHHHHHHHHHH-----hCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhh
Confidence            1111    2233333333     357899999876655444322211223455666555 777888733211      12


Q ss_pred             HHHHHHHchHHHHHHH----hCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          207 LEAYAELSKPLEDYYQ----KQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       207 l~~y~~~~~~l~~~y~----~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +-.+.+.+..+.+|.-    +.+ +-.|| +.++++..+.+.+.+.++
T Consensus       246 y~~~~~~ir~iq~~l~~~a~~~~-ip~I~-n~~i~~s~~~~~~~i~~~  291 (301)
T PRK04220        246 YLKNFEIIREINDYIVEKAKKHG-VPVIE-NISIEETVDKILEIITER  291 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCeec-CccHHHHHHHHHHHHHHH
Confidence            2122233333334332    232 33355 667777777777777654

>PHA03132 thymidine kinase; Provisional

Probab=98.70  E-value=1.4e-07  Score=92.07  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=69.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC---cccHHHHH----------H
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDIIF----------G  144 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~---~ip~~~~~----------~  144 (268)
                      +++|+|+|+.||||||+++.|++.+|..++-+.+=+.....-.+..++.+.+.+.++.   .-+...+.          .
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl  336 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFR  336 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHH
Confidence            7899999999999999999999998544332211000000001235677777765442   22222221          1


Q ss_pred             HHHHHHHcC---------CccCccEEEEcCCcCCH-H-H---------------HHHHHhh--cCCCeEEEEecCHHHHH
Q 024390          145 LLSKRLEDG---------YYRGEIGFILDGLPRSR-I-Q---------------AEILDQL--AEIDLVVNFKCADNFIV  196 (268)
Q Consensus       145 ll~~~l~~~---------~~~~~~g~IlDGfPr~~-~-q---------------a~~l~~~--~~~d~vV~Ld~~~e~l~  196 (268)
                      ++.+++...         ....+..+|.|-++.+. . +               ...+..+  ..||++|+|++++++++
T Consensus       337 ~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~al  416 (580)
T PHA03132        337 ALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEENL  416 (580)
T ss_pred             HHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHHH
Confidence            112222211         11234567888776432 1 1               1122222  35899999999999999


Q ss_pred             hhhh
Q 024390          197 TNRG  200 (268)
Q Consensus       197 ~Rl~  200 (268)
                      +|+.
T Consensus       417 kRIk  420 (580)
T PHA03132        417 RRVK  420 (580)
T ss_pred             HHHH
Confidence            9984

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.69  E-value=1.9e-07  Score=78.42  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcc------c--HH---HHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVV------S--ED---IIFG  144 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i------p--~~---~~~~  144 (268)
                      +.+|++-|++-|||||+|+.|.+.+.-+  |+++|.++.. ++++..         ..+.-+      +  ..   .+..
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~   70 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRY---------RPGDGLEPAGDRPDGGPLFRRLYA   70 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGG---------TSTTSEEEETTSEEE-HHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccc---------cCCccccccccCCchhHHHHHHHH
Confidence            3579999999999999999999999655  7777776653 221100         000000      0  01   1111


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHH-HHHHHhh--cCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHH
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQL--AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYY  221 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~q-a~~l~~~--~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y  221 (268)
                      .+...+... ...+..+|+|+....... .+.+.+.  ..+-++|-+.||.|++.+|-..+-++..-.-..+...+   +
T Consensus        71 ~~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a~~q~~~V---h  146 (174)
T PF07931_consen   71 AMHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGLAAWQAEHV---H  146 (174)
T ss_dssp             HHHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHHHHTTGG---G
T ss_pred             HHHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHHHHHHHhhc---c
Confidence            122222211 135788999987655543 4555343  34557999999999988887333221111111111111   1


Q ss_pred             HhCCcEEEEeCC-CCHHHHHHHHHHHH
Q 024390          222 QKQKKLLEFQVG-SAPVETWQGLLTAL  247 (268)
Q Consensus       222 ~~~~~l~~Ida~-~s~eev~~~I~~~L  247 (268)
                      .....=+.||++ .+++|..+.|.+.+
T Consensus       147 ~~~~YDleVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  147 EGGRYDLEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             TT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence            111122678976 68999999998765

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.67  E-value=2.6e-08  Score=77.91  Aligned_cols=106  Identities=12%  Similarity=0.088  Sum_probs=52.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH---HHHHHHHHcCCccC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF---GLLSKRLEDGYYRG  157 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~---~ll~~~l~~~~~~~  157 (268)
                      |+|.|+|||||||+|+.|+++++..+   .+..............   ...........+...   ..+.+....  ...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   72 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDII---RDIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRR--MNK   72 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHH---HHHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHH--HTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHH---HHHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcc--ccc
Confidence            78999999999999999999982211   1222111100000000   001111222222222   222222210  124


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcCCCeE-EEEecCHHHHHhhhh
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAEIDLV-VNFKCADNFIVTNRG  200 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~v-V~Ld~~~e~l~~Rl~  200 (268)
                      ...+|+||......      ........ |+|+||++++.+|+.
T Consensus        73 ~~~~iid~~~~~~~------~~~~~~~~~i~L~~~~e~~~~R~~  110 (129)
T PF13238_consen   73 GRNIIIDGILSNLE------LERLFDIKFIFLDCSPEELRKRLK  110 (129)
T ss_dssp             TSCEEEEESSEEEC------ETTEEEESSEEEE--HHHHHHHHH
T ss_pred             CCcEEEecccchhc------ccccceeeEEEEECCHHHHHHHHH
Confidence            67789998643211      00111222 999999999999994

...

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.67  E-value=2.7e-07  Score=75.46  Aligned_cols=104  Identities=17%  Similarity=0.102  Sum_probs=59.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHHHHcC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKRLEDG  153 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l---~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~l~~~  153 (268)
                      |+|+|.|||||||+|+.|++.+   +..  +++. |-++..+........        ..  ..+....+.  ...+.  
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~--------~~--~~~~~~~~~~~a~~l~--   68 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSR--------ED--REENIRRIAEVAKLLA--   68 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCc--------ch--HHHHHHHHHHHHHHHH--
Confidence            7899999999999999999998   543  3443 445543321110000        00  001111111  11222  


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl  199 (268)
                        ..+..+|+|..-....+...+.+..  .+-.+|+|++|.+++.+|.
T Consensus        69 --~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~  114 (149)
T cd02027          69 --DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD  114 (149)
T ss_pred             --hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence              1356788886544444444444443  3456899999999999986

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.65  E-value=2.5e-07  Score=92.27  Aligned_cols=157  Identities=13%  Similarity=0.116  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~  149 (268)
                      ++..|+++|.|||||||+|+.|+++++     +.+++. |.+|..+..+......-+          ......+.  ...
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~~~~~~~~r----------~~~~~~l~~~a~~  527 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRDLGFSDADR----------VENIRRVAEVARL  527 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence            578999999999999999999999973     456666 445554432111110000          01111111  111


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHh-C
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQK-Q  224 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~-~  224 (268)
                      +.    ..+..+|+|..-....+.+.+.+..  ..-++|||+++.+.+.+|....+-  .+-..++. ...+...|.. .
T Consensus       528 ~~----~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~-l~~~r~~y~~P~  602 (632)
T PRK05506        528 MA----DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKN-FTGIDSPYEAPE  602 (632)
T ss_pred             HH----hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhcccccccc-ccccccCCCCCC
Confidence            11    2356678886433344444444432  234799999999999999521110  01011110 1111122332 2


Q ss_pred             CcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390          225 KKLLEFQV-GSAPVETWQGLLTALHL  249 (268)
Q Consensus       225 ~~l~~Ida-~~s~eev~~~I~~~L~~  249 (268)
                      .--+.||. +.+++++.++|.++|..
T Consensus       603 ~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        603 NPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence            23456776 67999999999999875

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.63  E-value=2.9e-06  Score=70.30  Aligned_cols=162  Identities=13%  Similarity=0.126  Sum_probs=87.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH---HHHHHcC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL---SKRLEDG  153 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll---~~~l~~~  153 (268)
                      ++.+++.|.||+||||+++.+.+.+ +...++-|+++-+...... + -+.++.+.   .+|.+.-..+.   .+++.+.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g-l-ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~   78 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG-L-VEHRDEMR---KLPLENQRELQAEAAKRIAEM   78 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC-C-cccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999 7788999998866422100 0 00111222   13333332222   2333322


Q ss_pred             CccCccEEEEcCCc-----CCHH--HHHHHHhhcCCCeEEEEecCHHHHHhhhh-H-------HHHHHHHHHHHHch-HH
Q 024390          154 YYRGEIGFILDGLP-----RSRI--QAEILDQLAEIDLVVNFKCADNFIVTNRG-G-------SLKEKLEAYAELSK-PL  217 (268)
Q Consensus       154 ~~~~~~g~IlDGfP-----r~~~--qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-~-------~~~~rl~~y~~~~~-~l  217 (268)
                          ...+|+|+.-     ....  -=.+.-+..+||++|.|..+++.++.|-. +       ...+-+...++... ..
T Consensus        79 ----~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA  154 (189)
T COG2019          79 ----ALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAA  154 (189)
T ss_pred             ----hhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHH
Confidence                1126666421     0000  00122234689999999999999888761 1       01111222111111 01


Q ss_pred             HHHHHhCC-cEEEEe-CCCCHHHHHHHHHHHHH
Q 024390          218 EDYYQKQK-KLLEFQ-VGSAPVETWQGLLTALH  248 (268)
Q Consensus       218 ~~~y~~~~-~l~~Id-a~~s~eev~~~I~~~L~  248 (268)
                      ..|---.+ .+..|. -+..+++..++|...|.
T Consensus       155 ~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~  187 (189)
T COG2019         155 MAYAILLGATVKIVENHEGDPEEAAEEIVELLD  187 (189)
T ss_pred             HHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence            11111123 344444 35689999999988775

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.61  E-value=4.9e-07  Score=74.56  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=60.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHhhcCCCChhHHHHH-HHHhccCcccHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSPRSSLHKQIA-NAVNRGEVVSEDIIFGLLSKRL  150 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir~~~~~~~~~g~~i~-~~l~~G~~ip~~~~~~ll~~~l  150 (268)
                      +|..|.|.|.|||||||+|+.|.+++   |.  .+++. |.+|..+...-.....-+ +.+.         ...-+...+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll   70 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL   70 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence            46789999999999999999999987   33  34544 666665543211111000 0000         011222333


Q ss_pred             HcCCccCccEEEEcCCcCCHHHHHHHHhhcC--CCeEEEEecCHHHHHhhhh
Q 024390          151 EDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~--~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      ..    .+.-+|+...-......+...+...  .-+-||++||.+++.+|-.
T Consensus        71 ~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   71 AD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             HH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred             Hh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence            32    3556677654333333333433333  3469999999999999964

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.60  E-value=1.2e-07  Score=80.63  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQD  116 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~  116 (268)
                      +|.|.|+|||||||+|+.|++.+ ++.+|++++.....
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~   38 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE   38 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence            37899999999999999999999 78999999887643

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.58  E-value=4.7e-06  Score=79.52  Aligned_cols=168  Identities=15%  Similarity=0.100  Sum_probs=88.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC------ChhHHHH---HHHHhccC------cccHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR------SSLHKQI---ANAVNRGE------VVSED  140 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~------~~~g~~i---~~~l~~G~------~ip~~  140 (268)
                      .++..|+|.|+||+||||++..||+++|+.++-..|.+|+.+..-      ..+....   -..+..+.      ...+.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~  332 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE  332 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence            357889999999999999999999999998654446666643211      0010000   01111111      11111


Q ss_pred             H--------------HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCC-eEEEEecCHH-HHHhhhhHHH-
Q 024390          141 I--------------IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEID-LVVNFKCADN-FIVTNRGGSL-  203 (268)
Q Consensus       141 ~--------------~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d-~vV~Ld~~~e-~l~~Rl~~~~-  203 (268)
                      +              +..++.+.+.     .+..+|+||..-...-.+. .....+. +.|.+.|+++ ...+|+..+- 
T Consensus       333 vi~Gf~~q~~~V~~gi~~vI~r~l~-----eG~SvIIEGVHl~P~~i~~-~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~  406 (475)
T PRK12337        333 VLRGFRDQVQQVAVGLGAIQERSAQ-----EGTSLVLEGVHLVPGYLRH-PYQAGALVVPMLVTLPDEALHRRRFELRDR  406 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----cCCeEEEECCCCCHHHHHH-HHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence            1              1223333333     4778999996544332221 1122333 3456666665 5566663321 


Q ss_pred             -------HHHHHHHHHHchHHHHHHHhC---CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          204 -------KEKLEAYAELSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       204 -------~~rl~~y~~~~~~l~~~y~~~---~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                             .+|+-.|-.++..+.+|.-+.   ..+-.|+ +.++++..+.+.+.+...
T Consensus       407 ~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~~~~ipvI~-n~nid~tv~~~l~~i~~~  462 (475)
T PRK12337        407 ETGASRPRERYLRHFEEIRLIQDHLLRLARQEGVPVLP-GEDLDESIDKALEVVLRR  462 (475)
T ss_pred             hccCCCchhHHHHhHHHHHHHHHHHHHHHHHcCCCeec-CccHHHHHHHHHHHHHHH
Confidence                   233334444555566666432   1233344 566777777776666544

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.57  E-value=1.2e-06  Score=75.00  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC---CCccchhH-HHHhhcCC-CChhHHHH-HHHHhccCcccHHHHHHHHHHHHHc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSS-IVRQDLSP-RSSLHKQI-ANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~d-lir~~~~~-~~~~g~~i-~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      +.|++.|+|||||||.|+.|++.+.   ...++.+. ..+-.... .-+..++. ++.+.       +-...+|..++. 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence            5799999999999999999999873   22333321 22111110 11111111 11111       111223333332 


Q ss_pred             CCccCccEEEEcCC--cCC-HHHHHHHH-hhcCCCeEEEEecCHHHHHhhh
Q 024390          153 GYYRGEIGFILDGL--PRS-RIQAEILD-QLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       153 ~~~~~~~g~IlDGf--Pr~-~~qa~~l~-~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                           +.-+|+|..  -.. ..|....- +...+-++|++.||.+++.+|.
T Consensus        74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN  119 (261)
T COG4088          74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN  119 (261)
T ss_pred             -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh
Confidence                 345677753  111 12332221 2346678999999999999998

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.57  E-value=5.2e-07  Score=77.10  Aligned_cols=116  Identities=12%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc-------HHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS-------EDIIFGL  145 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip-------~~~~~~l  145 (268)
                      .++..++|.|+|||||||++..+.+.+   ++.+|+.|++ +...+.    ...+...  ......       ..+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~----~~~~~~~--~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPD----YDELLKA--DPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTT----HHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccc----hhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence            466789999999999999999999987   7788888654 454432    1111110  011100       1223334


Q ss_pred             HHHHHHcCCccCccEEEEcCCcCCHHHHH-HHHhhcC--C-CeEEEEecCHHHHHhhhhHHH
Q 024390          146 LSKRLEDGYYRGEIGFILDGLPRSRIQAE-ILDQLAE--I-DLVVNFKCADNFIVTNRGGSL  203 (268)
Q Consensus       146 l~~~l~~~~~~~~~g~IlDGfPr~~~qa~-~l~~~~~--~-d~vV~Ld~~~e~l~~Rl~~~~  203 (268)
                      +...+.     .+..+|+||.-++..... .++.+..  . -.++++.++++..+.|..++.
T Consensus        86 ~~~a~~-----~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   86 IEYAIE-----NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             HHHHHH-----CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             HHHHHH-----cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            444444     356899998766555443 3443321  2 247888999999999985444

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.56  E-value=4.4e-07  Score=78.46  Aligned_cols=143  Identities=17%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHhhcCC------CC----h-------hHHHHHHHHhccC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVRQDLSP------RS----S-------LHKQIANAVNRGE  135 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~---~is~~dlir~~~~~------~~----~-------~g~~i~~~l~~G~  135 (268)
                      .+..+|.|.|++||||||+|+.|++.++..   .|+.|+.....-..      ..    +       +.+.+.. +.+|+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence            456789999999999999999999999854   66667666432110      00    0       1111211 22233


Q ss_pred             cccHHHHHHHHHHHHHcC-CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh-hH-------HHHHH
Q 024390          136 VVSEDIIFGLLSKRLEDG-YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-GG-------SLKEK  206 (268)
Q Consensus       136 ~ip~~~~~~ll~~~l~~~-~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl-~~-------~~~~r  206 (268)
                      .+..-...-.-..+.... ......-+|++|+---..  +.+..  ..|+.||++++.++++.|. ..       .....
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~v  160 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRDVQERGRDLESV  160 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHH
Confidence            221100000000000000 011356678899732111  12222  4689999999999887776 22       24566


Q ss_pred             HHHHHHHchHHHHHHHh
Q 024390          207 LEAYAELSKPLEDYYQK  223 (268)
Q Consensus       207 l~~y~~~~~~l~~~y~~  223 (268)
                      +++|....+|..+.|-+
T Consensus       161 i~qy~~~vkp~~~~fIe  177 (218)
T COG0572         161 IEQYVKTVRPMYEQFIE  177 (218)
T ss_pred             HHHHHHhhChhhhhccC
Confidence            77888777777666643

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.55  E-value=2.7e-06  Score=71.70  Aligned_cols=157  Identities=12%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC---CCC----hhHHHHHHHHhccCcccHH--------H
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS---PRS----SLHKQIANAVNRGEVVSED--------I  141 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~---~~~----~~g~~i~~~l~~G~~ip~~--------~  141 (268)
                      +|+.++|.||+|+||||+.+.|-+..+ .++|+..--|..-+   ++.    -..++.++.+++|+.+...        .
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            788999999999999999999999884 34454433333211   111    1235566677776654321        1


Q ss_pred             HHHHHHHHHHcCCccCccEEEEcCCcCCHHH-HHHHHhhcCCCeEEEEecCH-HHHHhhh-------hHHHHHHHHHHHH
Q 024390          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQLAEIDLVVNFKCAD-NFIVTNR-------GGSLKEKLEAYAE  212 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~q-a~~l~~~~~~d~vV~Ld~~~-e~l~~Rl-------~~~~~~rl~~y~~  212 (268)
                      -..-+...+.     .+..+|+|=    ..| +..+.+..+....||+.+|. +++.+|+       ++.+++|+.....
T Consensus        82 ~~~~ve~~~~-----~G~~vildI----d~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~  152 (191)
T COG0194          82 SREPVEQALA-----EGKDVILDI----DVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKK  152 (191)
T ss_pred             cHHHHHHHHh-----cCCeEEEEE----ehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence            1233333443     345666651    123 33333323333455555543 4677777       5678899988777


Q ss_pred             HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ......+ |   +.+ .+  +.+.+...+++.+++...
T Consensus       153 Ei~~~~~-f---dyv-iv--Ndd~e~a~~~l~~ii~ae  183 (191)
T COG0194         153 EISHADE-F---DYV-IV--NDDLEKALEELKSIILAE  183 (191)
T ss_pred             HHHHHHh-C---CEE-EE--CccHHHHHHHHHHHHHHH
Confidence            6554332 2   333 23  567888899998888765

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.54  E-value=9.8e-07  Score=73.70  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC-ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP-RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~-~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~  151 (268)
                      .++..|.|.|.+||||||+|..|.+++   |.. ++=-||-+|.-+..+-...++  +-..+      --.+.-+.+.+.
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e--dR~en------iRRvaevAkll~   92 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE--DRIEN------IRRVAEVAKLLA   92 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChH--HHHHH------HHHHHHHHHHHH
Confidence            567889999999999999999999987   332 222257777776532111100  00000      001122223333


Q ss_pred             cCCccCccEEEEcCCcCCHHHH-HHHHhh-cC-CCeEEEEecCHHHHHhhhhHHHHHHHHH-HHHHchHHHHHHHhC-Cc
Q 024390          152 DGYYRGEIGFILDGLPRSRIQA-EILDQL-AE-IDLVVNFKCADNFIVTNRGGSLKEKLEA-YAELSKPLEDYYQKQ-KK  226 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa-~~l~~~-~~-~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~-y~~~~~~l~~~y~~~-~~  226 (268)
                      .     ...++|-.|-.-.... +...+. .. .-+=||++||.+++.+|=++-+=++-.. --.+.-.+-.-|+.+ +-
T Consensus        93 d-----aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P~~P  167 (197)
T COG0529          93 D-----AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENP  167 (197)
T ss_pred             H-----CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCCCCC
Confidence            2     3345555543322221 222222 22 2358999999999999985443211110 001112233445544 34


Q ss_pred             EEEEeC-CCCHHHHHHHHHHHHHhhcc
Q 024390          227 LLEFQV-GSAPVETWQGLLTALHLQHI  252 (268)
Q Consensus       227 l~~Ida-~~s~eev~~~I~~~L~~~~~  252 (268)
                      -+++|+ ..++++..++|..+|....+
T Consensus       168 el~l~t~~~~vee~v~~i~~~l~~~~~  194 (197)
T COG0529         168 ELHLDTDRNSVEECVEQILDLLKERKI  194 (197)
T ss_pred             eeEeccccCCHHHHHHHHHHHHHhccc
Confidence            677886 58999999999999987654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.53  E-value=1.9e-07  Score=66.35  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .|+|+|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0645 Predicted kinase [General function prediction only]

Probab=98.50  E-value=2.7e-06  Score=70.55  Aligned_cols=113  Identities=15%  Similarity=0.107  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHH----HHHHHHHHHHcCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI----IFGLLSKRLEDGY  154 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~----~~~ll~~~l~~~~  154 (268)
                      ..+++.|.|||||||+|+.|++.+|..+|..|+ +|+.+.. .+...    -...| ....+.    ...++.....-  
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~-irk~L~g-~p~~~----r~~~g-~ys~~~~~~vy~~l~~~A~l~--   72 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV-IRKRLFG-VPEET----RGPAG-LYSPAATAAVYDELLGRAELL--   72 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHH-HHHHhcC-Ccccc----cCCCC-CCcHHHHHHHHHHHHHHHHHH--
Confidence            468999999999999999999999999999955 5555443 11000    00011 111111    11111111110  


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHhh---cC-CCeEEEEecCHHHHHhhhh
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQL---AE-IDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~~---~~-~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      ...+..+|+|+......+-+....+   .. +-..|+++++.+++..|+.
T Consensus        73 l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~  122 (170)
T COG0645          73 LSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLA  122 (170)
T ss_pred             HhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHH
Confidence            1247789999865555554444433   22 3456999999999999993

>PTZ00301 uridine kinase; Provisional

Probab=98.49  E-value=1.2e-06  Score=75.88  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVRQ  115 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dlir~  115 (268)
                      +.|.|.|+|||||||+|+.|++.++       +..+++|+..+.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~   47 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD   47 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence            6799999999999999999988762       235666766543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.47  E-value=3e-06  Score=72.05  Aligned_cols=35  Identities=26%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR  114 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir  114 (268)
                      .|.|.|++||||||+++.|+..+   +..++++++...
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            37899999999999999999987   366788877663

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.45  E-value=3.1e-06  Score=75.94  Aligned_cols=105  Identities=20%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcC-CCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~-~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      +.|+|+|.|||||||+|+.|++.+     .+.+++-+++...... ..+.-.+.++.           .+...+...+. 
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls-   69 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS-   69 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT-
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc-
Confidence            579999999999999999999975     3345664444412110 00111111111           11222333332 


Q ss_pred             CCccCccEEEEcCCcCCHH---HHHHHHh-hcCCCeEEEEecCHHHHHhhh
Q 024390          153 GYYRGEIGFILDGLPRSRI---QAEILDQ-LAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       153 ~~~~~~~g~IlDGfPr~~~---qa~~l~~-~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                          ...-+|+|+--.-..   +.-.+-+ ....-++|+++|+.|.+++|.
T Consensus        70 ----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N  116 (270)
T PF08433_consen   70 ----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRN  116 (270)
T ss_dssp             ----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHH
T ss_pred             ----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhh
Confidence                346789997422211   2222222 234557999999999999998

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PLN02165 adenylate isopentenyltransferase

Probab=98.43  E-value=3.1e-06  Score=77.80  Aligned_cols=37  Identities=11%  Similarity=0.084  Sum_probs=33.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl  112 (268)
                      .++..|+|+||+|||||+++..||+.++...||+|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            4667899999999999999999999999999999876

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.40  E-value=1.6e-06  Score=80.03  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCC------CccchhHHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVR  114 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~------~~is~~dlir  114 (268)
                      .+|+|+|||||||+++.|++.+..      .+++.||++.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP   41 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence            689999999999999999988763      4899999884

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.33  E-value=1.2e-06  Score=73.77  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ  115 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~  115 (268)
                      .|.|.|+|||||||+|+.|++.+     +...|++++..+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            37899999999999999999996     4568999998864

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.33  E-value=1.1e-05  Score=67.96  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC----CccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccH--------HH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV----PRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSE--------DI  141 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~----~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~--------~~  141 (268)
                      +..|+|+||+||||+|+++.|.+.+.-    +.-.+..-.|.-..++..    ..+...+.++.|+.+..        .+
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            356899999999999999999988752    112221222221111111    12333444444432210        01


Q ss_pred             HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhhh-------HHHHHHHHHHHHH
Q 024390          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRG-------GSLKEKLEAYAEL  213 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl~-------~~~~~rl~~y~~~  213 (268)
                      ...-+...+.+     +...|+|.-|.   -+..|.....--++||+..+ .+.+.+|+.       +.+.+|+...++.
T Consensus        82 ~~~~i~~~~~~-----gk~~il~~~~~---g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~  153 (183)
T PF00625_consen   82 SKSAIDKVLEE-----GKHCILDVDPE---GVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKE  153 (183)
T ss_dssp             EHHHHHHHHHT-----TTEEEEEETHH---HHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHH
T ss_pred             ccchhhHhhhc-----CCcEEEEccHH---HHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence            12223333333     45577764332   23444443222357888766 567777762       2344444444332


Q ss_pred             chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .    .++.+.+  ..|. +.+.++++++|.++|..
T Consensus       154 ~----~~~~~fd--~vi~-n~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  154 F----EHYNEFD--YVIV-NDDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             H----GGGGGSS--EEEE-CSSHHHHHHHHHHHHHH
T ss_pred             H----hHhhcCC--EEEE-CcCHHHHHHHHHHHHHh
Confidence            2    1222222  2344 45899999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK05439 pantothenate kinase; Provisional

Probab=98.31  E-value=7.7e-06  Score=74.72  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR  114 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dlir  114 (268)
                      .++..|.|.|+|||||||+|+.|++.++       +..|++|+.+.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            4567899999999999999999998664       35678877663

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.29  E-value=2.6e-05  Score=68.63  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC----C--ChhHHHHHHHHhc-cCccc--------HH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP----R--SSLHKQIANAVNR-GEVVS--------ED  140 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~----~--~~~g~~i~~~l~~-G~~ip--------~~  140 (268)
                      .++.+|+|-|+||.||||+|..||.++|+.++=..|.+|+.+.+    .  ..+....-.+-+. +...+        .+
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d  166 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED  166 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence            56788999999999999999999999999876555666665431    0  1111111111100 00000        01


Q ss_pred             ---H----HHHHHHHHHHcCCccCccEEEEcCC---cCCHHHHHHHHhhcCCCeEEEEecCHHH-HHhhhhHHH------
Q 024390          141 ---I----IFGLLSKRLEDGYYRGEIGFILDGL---PRSRIQAEILDQLAEIDLVVNFKCADNF-IVTNRGGSL------  203 (268)
Q Consensus       141 ---~----~~~ll~~~l~~~~~~~~~g~IlDGf---Pr~~~qa~~l~~~~~~d~vV~Ld~~~e~-l~~Rl~~~~------  203 (268)
                         .    +...+...+.+     +..+|++|.   |.-.. -+.+   ....+.++|-+++|+ ...|+.++.      
T Consensus       167 qa~~V~~GI~~VI~RAi~e-----G~~lIIEGvHlVPg~i~-~~~~---~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~  237 (299)
T COG2074         167 QASAVMVGIEAVIERAIEE-----GEDLIIEGVHLVPGLIK-EEAL---GNNVFMFMLYIADEELHRERFYDRIRYTHAS  237 (299)
T ss_pred             HhHHHHHHHHHHHHHHHhc-----CcceEEEeeeecccccc-Hhhh---ccceEEEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence               1    12344444543     566788874   22111 1111   233556666666654 455664432      


Q ss_pred             --HHHHHHHHHHchHHHHHHHhCC---cEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          204 --KEKLEAYAELSKPLEDYYQKQK---KLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       204 --~~rl~~y~~~~~~l~~~y~~~~---~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                        -.|+-.|..++..+-+|..+..   .+=.|+ +.+.++..+++++.+....
T Consensus       238 rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~-n~di~etv~~il~~i~~~~  289 (299)
T COG2074         238 RPGGRYLEYFKEIRTIHDYLVERAREHGVPVIE-NDDIDETVDRILEDIRKRT  289 (299)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhcCCCeec-cccHHHHHHHHHHHHHHHH
Confidence              1345556666666666664321   233444 6678999999988887654

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.28  E-value=4.3e-06  Score=72.80  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV  113 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dli  113 (268)
                      +|.|.|++||||||+|+.|+..++       +.+|++++..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            367999999999999999999883       3456777654

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.26  E-value=2.9e-05  Score=69.69  Aligned_cols=138  Identities=17%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      ..|+|.|.+||||||-.+.|. .+|+..|+=                           +|..++.+++........-...
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lE-D~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALE-DLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHH-hcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence            468999999999999888885 466654421                           4455555555332221110123


Q ss_pred             cEEEEcCCcCCH-HH-HHHHHhh--cCC-CeEEEEecCHHHHHhhhhH-----------HHHHHHHHHHHHchHHHHHHH
Q 024390          159 IGFILDGLPRSR-IQ-AEILDQL--AEI-DLVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       159 ~g~IlDGfPr~~-~q-a~~l~~~--~~~-d~vV~Ld~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~~y~  222 (268)
                      -.+++|---+.. .. .+.+.+.  ... -.+|||+|+++++++|..+           .+.+-++.-++...++.+.  
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~--  131 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRER--  131 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHh--
Confidence            346777321111 11 1222222  133 3599999999999999832           1222233333444444332  


Q ss_pred             hCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          223 KQKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       223 ~~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                       .+  ++||++ .++.++.+.|.+.+..
T Consensus       132 -Ad--~vIDTs~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen  132 -AD--LVIDTSNLSVHQLRERIRERFGG  156 (284)
T ss_pred             -CC--EEEECCCCCHHHHHHHHHHHhcc
Confidence             12  467864 7899999999988864

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK07429 phosphoribulokinase; Provisional

Probab=98.22  E-value=3.2e-06  Score=77.91  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dli  113 (268)
                      .++.+|.|.|++||||||+++.|++.++   ...++.+++.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            4678999999999999999999999987   4567777753

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.22  E-value=1.4e-05  Score=69.86  Aligned_cols=45  Identities=27%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             CcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           53 SDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +-++.|.+.+.+...      .+.++.+|.|.|++||||||+++.|+..+.
T Consensus        14 ~~~~~l~~~~~~~~~------~~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         14 AVHKPLLRRLAALQA------EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             HHHHHHHHHHHHHHh------cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345566655433322      124678899999999999999999998874

>PHA00729 NTP-binding motif containing protein

Probab=98.20  E-value=1.1e-05  Score=70.37  Aligned_cols=105  Identities=11%  Similarity=0.045  Sum_probs=59.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC--CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~--~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ..|+|+|+||+||||+|..|+++++.  ..++.++.-....              .....++.+.....+.......  .
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~--------------~~~~fid~~~Ll~~L~~a~~~~--~   81 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV--------------QNSYFFELPDALEKIQDAIDND--Y   81 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC--------------CcEEEEEHHHHHHHHHHHHhcC--C
Confidence            47999999999999999999998752  2222221111110              0111233343444444433332  1


Q ss_pred             CccEEEEcCCcC--CH-H-HHH------HHHhhc--CCCeEEEEecCHHHHHhhh
Q 024390          157 GEIGFILDGLPR--SR-I-QAE------ILDQLA--EIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       157 ~~~g~IlDGfPr--~~-~-qa~------~l~~~~--~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ...-+|+|++--  .. . ..+      .+.+..  .+++++++.++++.+.+++
T Consensus        82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L  136 (226)
T PHA00729         82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL  136 (226)
T ss_pred             CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence            123368898311  10 0 101      122222  5889999999999999998

>COG4639 Predicted kinase [General function prediction only]

Probab=98.20  E-value=2.4e-05  Score=64.10  Aligned_cols=107  Identities=14%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-cccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-VVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      ..++++|+|||||||.++...  .....+|.+++=+..       |....+....|. ..-.++....+++++.     .
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sqk~~~~~~~~l~~~l~qrl~-----~   68 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQKNDELVWDILYKQLEQRLR-----R   68 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhccccHHHHHHHHHHHHHHHHH-----c
Confidence            468999999999999998643  356677776543332       111111111111 0112334444555554     3


Q ss_pred             ccEEEEcCCcCCHHHHHHHH----hhcCCCeEEEEecCHHHHHhhh
Q 024390          158 EIGFILDGLPRSRIQAEILD----QLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~----~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      +...|+|..-....+.+.+-    ++.-...+|+||.|.+.|.+|.
T Consensus        69 Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN  114 (168)
T COG4639          69 GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN  114 (168)
T ss_pred             CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence            67789998654444433332    2334456899999999999996

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.19  E-value=5.7e-05  Score=65.86  Aligned_cols=149  Identities=18%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHhhcCC---------CChhHHHHHHHHhccCcccHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSP---------RSSLHKQIANAVNRGEVVSEDI  141 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir~~~~~---------~~~~g~~i~~~l~~G~~ip~~~  141 (268)
                      ..+..|++.|.|+.|||++|+.|+..+   |+  .+++.|+.=|+....         ..+.+..+++.+.      ...
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~   83 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEA   83 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHH
Confidence            456789999999999999999999765   33  578889888877543         1222333332221      111


Q ss_pred             HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhh------------------
Q 024390          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR------------------  199 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl------------------  199 (268)
                       .+-+...+.+.   .++--|+|+.=.|....+.+.+.    .-.-++|-.-|+++.++++.                  
T Consensus        84 -l~dl~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~  159 (222)
T PF01591_consen   84 -LEDLIEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEE  159 (222)
T ss_dssp             -HHHHHHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHH
T ss_pred             -HHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHH
Confidence             22222334432   45667999987777665555432    21224555667788777765                  


Q ss_pred             -hHHHHHHHHHHHHHchHHHHHHHhC-CcEEEEeCCC
Q 024390          200 -GGSLKEKLEAYAELSKPLEDYYQKQ-KKLLEFQVGS  234 (268)
Q Consensus       200 -~~~~~~rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~  234 (268)
                       .+.+.+|++.|++...|+.+-.++. ..+..+|++.
T Consensus       160 A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~  196 (222)
T PF01591_consen  160 AIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGE  196 (222)
T ss_dssp             HHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTT
T ss_pred             HHHHHHHHHHhhcccccccccccccCceEEEEEcCCc
Confidence             2357789999988888876211111 1355566543

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.17  E-value=1.9e-05  Score=71.57  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dli  113 (268)
                      +.+.+|.|.|++||||||+++.|+..+.       +..+++++..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            4567899999999999999998877663       3346666544

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.11  E-value=1.8e-05  Score=67.32  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +|.|.|++||||||+|+.|+..++.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc
Confidence            4889999999999999999999973

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN02772 guanylate kinase

Probab=98.10  E-value=5e-05  Score=71.23  Aligned_cols=162  Identities=12%  Similarity=0.083  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcC---CCCh----hHHHHHHHHhccCcccHH--------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED--------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~---~~~~----~g~~i~~~l~~G~~ip~~--------  140 (268)
                      ..+.|+|+||+|+||+|+.+.|.+.+.. ..++....=|..-.   .+..    .-+.+...+.+|+.+...        
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            5668999999999999999999886531 11111111111100   1100    012334444444432110        


Q ss_pred             HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEec--CHHHHHhhh-------hHHHHHHHHHHH
Q 024390          141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC--ADNFIVTNR-------GGSLKEKLEAYA  211 (268)
Q Consensus       141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~--~~e~l~~Rl-------~~~~~~rl~~y~  211 (268)
                      +-.+.+...+.+     +..+|+|=-|..   +..+.+.. ++.++.|-+  +.+++.+|+       ++.+++|+..++
T Consensus       214 Tsk~~V~~vl~~-----Gk~vILdLD~qG---ar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~  284 (398)
T PLN02772        214 TSIEAVEVVTDS-----GKRCILDIDVQG---ARSVRASS-LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAE  284 (398)
T ss_pred             ccHHHHHHHHHh-----CCcEEEeCCHHH---HHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            112233333332     456677633322   23333321 233333334  488999998       457889998876


Q ss_pred             HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      .+.... . +...--.+.+|  .+.++.++++.++|....
T Consensus       285 ~Ei~~~-~-~~~~fD~vIvN--DdLe~A~~~L~~iL~~~~  320 (398)
T PLN02772        285 AELEQG-K-SSGIFDHILYN--DNLEECYKNLKKLLGLDG  320 (398)
T ss_pred             HHHhhc-c-ccCCCCEEEEC--CCHHHHHHHHHHHHhhcC
Confidence            543211 0 10011123333  389999999999998665

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.05  E-value=6.4e-05  Score=73.83  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSI  112 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dl  112 (268)
                      +...|.|.|++||||||+++.|+..+ +...|++++.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            45789999999999999999999987 4457777764

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.05  E-value=3e-06  Score=70.91  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQ  115 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir~  115 (268)
                      ++++|+|+|||||||+|..|+..++  ..+++++.....
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~   40 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD   40 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH
Confidence            5799999999999999999999987  456666554433

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=0.00016  Score=68.62  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC----C-CccchhHHHHhhcCCCChhHHHHHHHHhccCc--ccHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----V-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~----~-~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~--ip~~~~~~ll~~~  149 (268)
                      ++..++|+||+||||||++..||..+.    . +++...|..|...      ..+++.+......  .+.... ..+.+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~~-~~l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKDI-KKFKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHHH-HHHHHH
Confidence            456799999999999999999998652    1 3333445554431      1223333232221  111112 233334


Q ss_pred             HHcCCccCccEEEEc--CCc-CCHHHHHHHHhhc-------CCCeEEEEecCH
Q 024390          150 LEDGYYRGEIGFILD--GLP-RSRIQAEILDQLA-------EIDLVVNFKCAD  192 (268)
Q Consensus       150 l~~~~~~~~~g~IlD--GfP-r~~~qa~~l~~~~-------~~d~vV~Ld~~~  192 (268)
                      +..   ...+.+|||  |++ ++..|++.|..+.       ....++.|++.-
T Consensus       295 l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        295 LAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence            432   245779999  774 6777887776542       123556666553

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.00  E-value=0.00034  Score=61.94  Aligned_cols=136  Identities=21%  Similarity=0.147  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      ..|+|.|.+|||||+-.+.|. .+|+-.++-                           +|.+++-+++.-..........
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lE-DlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLE-DLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHH-hcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence            368999999999999888775 455543321                           3444444444322111100134


Q ss_pred             cEEEEcCCcCCHHHHHHHH----hhc---CCC-eEEEEecCHHHHHhhhhH-----------HHHHHHHHHHHHchHHHH
Q 024390          159 IGFILDGLPRSRIQAEILD----QLA---EID-LVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELSKPLED  219 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~----~~~---~~d-~vV~Ld~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~  219 (268)
                      -.+++|=  |+......++    ++.   .++ .++||+++++++++|..+           .+.+-++.-++...|+.+
T Consensus        54 vAv~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~  131 (286)
T COG1660          54 VAVVIDV--RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLRE  131 (286)
T ss_pred             EEEEEec--ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHH
Confidence            4567773  3323222222    221   223 499999999999999833           233334444445555544


Q ss_pred             HHHhCCcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390          220 YYQKQKKLLEFQV-GSAPVETWQGLLTALHL  249 (268)
Q Consensus       220 ~y~~~~~l~~Ida-~~s~eev~~~I~~~L~~  249 (268)
                      .-+     ++||+ +.++.++.+.|...+..
T Consensus       132 ~A~-----~vIDTs~ls~~~Lr~~i~~~f~~  157 (286)
T COG1660         132 IAD-----LVIDTSELSVHELRERIRTRFLG  157 (286)
T ss_pred             Hhh-----hEeecccCCHHHHHHHHHHHHcc
Confidence            221     35776 57999999999999875

>PLN02348 phosphoribulokinase

Probab=97.93  E-value=4.7e-05  Score=71.38  Aligned_cols=28  Identities=11%  Similarity=0.162  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++..|.|.|++||||||+++.|++.+|
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3567899999999999999999999986

>PRK06761 hypothetical protein; Provisional

Probab=97.91  E-value=0.00019  Score=64.76  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      ++.|+|.|+|||||||+++.|+++++...++..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~   35 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE   35 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence            467999999999999999999999976555543

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.90  E-value=2.6e-05  Score=70.16  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIV  113 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dli  113 (268)
                      .|.|.|++||||||+++.|+..+   +...++++++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            37899999999999999999887   44567777654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.88  E-value=8.6e-06  Score=63.72  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIV  113 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~--is~~dli  113 (268)
                      |+|.||||+|||++++.+++.++.++  ++.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~   35 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI   35 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence            68999999999999999999998765  4444554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK15453 phosphoribulokinase; Provisional

Probab=97.85  E-value=9.3e-05  Score=66.63  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir  114 (268)
                      .++++|.|.|.+||||||+|+.|++.++     ..+++.|+..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4668899999999999999999998774     34566665554

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.83  E-value=0.00021  Score=60.18  Aligned_cols=113  Identities=16%  Similarity=0.094  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCC----h---hHHHH--HHH---Hhcc-------CcccHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRS----S---LHKQI--ANA---VNRG-------EVVSED  140 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~----~---~g~~i--~~~---l~~G-------~~ip~~  140 (268)
                      +|.|.|..|||++++|+.||+++|+++++- +++.+......    .   ..+..  ...   +..+       ....++
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            589999999999999999999999999998 77766543210    0   01111  111   1111       112233


Q ss_pred             HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390          141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      .+.....+.+.+.  ....++|+.|.  .   +..+-+-.+..+-|+|.+|.+..++|+.
T Consensus        80 ~~~~~~~~~i~~l--a~~~~~Vi~GR--~---a~~il~~~~~~l~V~i~A~~~~Rv~ri~  132 (179)
T PF13189_consen   80 KIFRAQSEIIREL--AAKGNCVIVGR--C---ANYILRDIPNVLHVFIYAPLEFRVERIM  132 (179)
T ss_dssp             HHHHHHHHHHHHH--HH---EEEEST--T---HHHHTTT-TTEEEEEEEE-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hccCCEEEEec--C---HhhhhCCCCCeEEEEEECCHHHHHHHHH
Confidence            3334333333332  12345666663  1   1222111223579999999999999983

>PRK09169 hypothetical protein; Validated

Probab=97.82  E-value=4.9e-05  Score=82.78  Aligned_cols=107  Identities=11%  Similarity=-0.021  Sum_probs=76.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ....|+++|++|+||||+++.|++++++.+++++..+.+.      .+++|.+++.... .+.+.....|.+.+..    
T Consensus      2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr~---- 2177 (2316)
T PRK09169       2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALRW---- 2177 (2316)
T ss_pred             hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhcC----
Confidence            3457999999999999999999999999999999888776      3566777655433 7777777777776642    


Q ss_pred             CccEEEE-cCC-cCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          157 GEIGFIL-DGL-PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       157 ~~~g~Il-DGf-Pr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                        ..+|= .|+ +........|.   .-+++|+++.+.+++.+|+
T Consensus      2178 --~vVLSTGGGav~~~enr~~L~---~~GlvV~L~an~~tl~~Rt 2217 (2316)
T PRK09169       2178 --EVVLPAEGFGAAVEQARQALG---AKGLRVMRINNGFAAPDTT 2217 (2316)
T ss_pred             --CeEEeCCCCcccCHHHHHHHH---HCCEEEEEECCHHHHHHHh
Confidence              11221 222 22222233333   3467999999999999998

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.80  E-value=0.0001  Score=65.54  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ....++|.||||+||||+|+.+++.+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00015  Score=70.82  Aligned_cols=141  Identities=16%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             CCcchHhhhccccccC---CCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHhhcCCCChhHHH
Q 024390           52 ESDSDQHRDSLRSVTL---PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSSLHKQ  126 (268)
Q Consensus        52 ~~~~~~l~~~~~~~~~---~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~~~~~~~~~g~~  126 (268)
                      +..|.+|.+.+-.+..   ...-|-.|.||  |++.||||+|||.+|+.+|.+++++++++.  +++... .  .+.-+.
T Consensus       196 d~~~~el~~li~~i~~Pe~~~~lGv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-S--GESEkk  270 (802)
T KOG0733|consen  196 DKTLAELCELIIHIKHPEVFSSLGVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-S--GESEKK  270 (802)
T ss_pred             HHHHHHHHHHHHHhcCchhHhhcCCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-C--cccHHH
Confidence            3456677665433211   12224455566  899999999999999999999999987763  455332 1  122345


Q ss_pred             HHHHHhccCc--------------------ccHHHHHHHHHHHHHcCC---c--cCccEEEEcC---CcCCHHHHHHHHh
Q 024390          127 IANAVNRGEV--------------------VSEDIIFGLLSKRLEDGY---Y--RGEIGFILDG---LPRSRIQAEILDQ  178 (268)
Q Consensus       127 i~~~l~~G~~--------------------ip~~~~~~ll~~~l~~~~---~--~~~~g~IlDG---fPr~~~qa~~l~~  178 (268)
                      +++.+.+...                    .-.++..+++.+.+...+   .  ..+.++++-|   -|...+  ..|.+
T Consensus       271 iRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRR  348 (802)
T KOG0733|consen  271 IRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRR  348 (802)
T ss_pred             HHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhc
Confidence            6665544221                    112344444444433221   0  1245666655   333332  34566


Q ss_pred             hcCCCeEEEEecCHHHHHhhh
Q 024390          179 LAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       179 ~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      .+.+|.=|.|.+|.++..+++
T Consensus       349 aGRFdrEI~l~vP~e~aR~~I  369 (802)
T KOG0733|consen  349 AGRFDREICLGVPSETAREEI  369 (802)
T ss_pred             cccccceeeecCCchHHHHHH
Confidence            788999999999999888876

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.66  E-value=4.2e-05  Score=69.91  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=32.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl  112 (268)
                      +++.|+|+||+|||||++|..|++.++...||.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            456899999999999999999999999999988773

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.62  E-value=0.00067  Score=60.53  Aligned_cols=29  Identities=14%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ..++|.|+||+|||++|+.|++.+|.+++
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            45889999999999999999999887765

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.0028  Score=52.58  Aligned_cols=150  Identities=16%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC-ccchhHHHHhhcCCCChhH---------HHHHHHHhccC-----------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVRQDLSPRSSLH---------KQIANAVNRGE-----------  135 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~-~is~~dlir~~~~~~~~~g---------~~i~~~l~~G~-----------  135 (268)
                      ++..|+++||+|+||-|+.......+... .+   .++|..+......|         .+..+.-..|.           
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~---~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~   80 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRL---HFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLS   80 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCce---EEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcc
Confidence            57789999999999999999988877432 11   11222221111110         00111111111           


Q ss_pred             -cccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHH
Q 024390          136 -VVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKL  207 (268)
Q Consensus       136 -~ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl  207 (268)
                       -+|.+     |.+.+.     .+..+|..|.-.-..|+..   ...-=.+|++.++++++.+|+.+       .+..|+
T Consensus        81 Ygip~e-----Id~wl~-----~G~vvl~NgSRa~Lp~arr---ry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL  147 (192)
T COG3709          81 YGIPAE-----IDLWLA-----AGDVVLVNGSRAVLPQARR---RYPQLLVVCITASPEVLAQRLAERGRESREEILARL  147 (192)
T ss_pred             ccCchh-----HHHHHh-----CCCEEEEeccHhhhHHHHH---hhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHH
Confidence             02222     222333     2445666664222222222   11223599999999999999943       344444


Q ss_pred             HHHHHHchHHHHHHH-hCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          208 EAYAELSKPLEDYYQ-KQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       208 ~~y~~~~~~l~~~y~-~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ..-.        .|. ..+-+..||.+...+...+++...|...
T Consensus       148 ~R~a--------~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         148 ARAA--------RYTAGPGDVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             Hhhc--------ccccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence            3211        122 1346889999999999999999888753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.60  E-value=0.00046  Score=69.50  Aligned_cols=33  Identities=12%  Similarity=0.191  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ....++++|.||+||||+++.|++.++...+++
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~  246 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS  246 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence            356799999999999999999999986655544

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.60  E-value=0.00036  Score=56.18  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=21.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      |+|+||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.56  E-value=6.3e-05  Score=58.10  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      +..++|.|||||||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4579999999999999999999988654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>CHL00181 cbbX CbbX; Provisional

Probab=97.56  E-value=0.00026  Score=64.12  Aligned_cols=27  Identities=33%  Similarity=0.573  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..++|.|+||+||||+|+.+++.+
T Consensus        57 ~~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         57 NPGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            456779999999999999999999875

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.55  E-value=0.00029  Score=55.16  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=44.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh--------CCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcc--cHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL--------EVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFG  144 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l--------~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~  144 (268)
                      +...++|.|++|+|||++++.+++.+        +..  +++...--     ....+...+.+.+.....-  +.+...+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence            34569999999999999999999976        332  22222111     1123444454444433222  3344446


Q ss_pred             HHHHHHHcCCccCccEEEEcCC
Q 024390          145 LLSKRLEDGYYRGEIGFILDGL  166 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGf  166 (268)
                      .+.+.+...   ...-+|||.+
T Consensus        78 ~~~~~l~~~---~~~~lviDe~   96 (131)
T PF13401_consen   78 LLIDALDRR---RVVLLVIDEA   96 (131)
T ss_dssp             HHHHHHHHC---TEEEEEEETT
T ss_pred             HHHHHHHhc---CCeEEEEeCh
Confidence            666777664   1246788875

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.55  E-value=0.00011  Score=63.54  Aligned_cols=111  Identities=18%  Similarity=0.160  Sum_probs=58.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH--HhhcCCCC------hhHHH-----HHHHHhccCcccHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV--RQDLSPRS------SLHKQ-----IANAVNRGEVVSEDIIFGL  145 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli--r~~~~~~~------~~g~~-----i~~~l~~G~~ip~~~~~~l  145 (268)
                      ..++|.||+|+|||.+|-.||+++|.+.|+.|.+-  .+ +..++      ++...     -...+..|. ++.+...+.
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~-l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~   79 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE-LSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER   79 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG-GTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc-cccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence            46899999999999999999999999999987533  22 21111      11000     112345565 555556777


Q ss_pred             HHHHHHcCCccCccEEEEcCCcCCHHHHHHHHh--hc-CC--CeEEEEecCHHHH
Q 024390          146 LSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ--LA-EI--DLVVNFKCADNFI  195 (268)
Q Consensus       146 l~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~--~~-~~--d~vV~Ld~~~e~l  195 (268)
                      +..++....  ...++|++|--  ..-...|-+  +- .+  -.+..+.++++..
T Consensus        80 Li~~v~~~~--~~~~~IlEGGS--ISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~  130 (233)
T PF01745_consen   80 LISEVNSYS--AHGGLILEGGS--ISLLNCMAQDPYWSLDFRWHIRRLRLPDEEV  130 (233)
T ss_dssp             HHHHHHTTT--TSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHH
T ss_pred             HHHHHHhcc--ccCceEEeCch--HHHHHHHHhcccccCCCeEEEEEEECCChHH
Confidence            777888763  48899999852  222233322  11 11  2477778877654

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.54  E-value=4.4e-05  Score=62.81  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +|+|+|+||+||||+++.|++. |++++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            5999999999999999999999 88766

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.53  E-value=7.9e-05  Score=64.84  Aligned_cols=39  Identities=15%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~  117 (268)
                      |+|.|.|.|||||||+++.+.+..+..-+++++-+++.+
T Consensus         1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l   39 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEIL   39 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHH
Confidence            579999999999999999997764443399999998875

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.52  E-value=9e-05  Score=61.22  Aligned_cols=41  Identities=10%  Similarity=0.181  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~  117 (268)
                      ..|+|+|.|+||+||||++.++++.+.-.-+.++-++-.++
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV   44 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV   44 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence            56899999999999999999999987544344444444443

>PLN02840 tRNA dimethylallyltransferase

Probab=97.49  E-value=0.0001  Score=69.78  Aligned_cols=36  Identities=28%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      .+++.|+|.||+||||||++..|+++++..+|+.|.
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            345679999999999999999999999988888865

>PRK12377 putative replication protein; Provisional

Probab=97.45  E-value=0.0025  Score=56.53  Aligned_cols=107  Identities=16%  Similarity=0.231  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      ..++|.|+||+|||.++..++..+   |  +.++++.+++...           +.....+..     ...++ +.+.  
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-----------~~~~~~~~~-----~~~~l-~~l~--  162 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-----------HESYDNGQS-----GEKFL-QELC--  162 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-----------HHHHhccch-----HHHHH-HHhc--
Confidence            458999999999999999999876   2  3456666666542           222222211     11122 2222  


Q ss_pred             CccCccEEEEcCC---cCCHHHHHHHHhh-----c-CCCeEEEEecCHHHHHhhhhHHHHHHH
Q 024390          154 YYRGEIGFILDGL---PRSRIQAEILDQL-----A-EIDLVVNFKCADNFIVTNRGGSLKEKL  207 (268)
Q Consensus       154 ~~~~~~g~IlDGf---Pr~~~qa~~l~~~-----~-~~d~vV~Ld~~~e~l~~Rl~~~~~~rl  207 (268)
                         ...-+|||.+   +.+..+.+.|..+     . .-..+|-=..+.+.+.+++.+++-.|+
T Consensus       163 ---~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl  222 (248)
T PRK12377        163 ---KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRM  222 (248)
T ss_pred             ---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence               3567899987   4444555555433     1 233455556777777666654444444

>PF13173 AAA_14: AAA domain

Probab=97.45  E-value=0.00098  Score=52.69  Aligned_cols=36  Identities=17%  Similarity=0.070  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIV  113 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dli  113 (268)
                      .+.++|.|+.|+||||+++.+++.+.    +.+++.++.-
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR   41 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence            35799999999999999999998865    6677765433

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.00045  Score=58.97  Aligned_cols=161  Identities=11%  Similarity=0.053  Sum_probs=86.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcC----CC-------------ChhHHHHHHHHhccCcccH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLS----PR-------------SSLHKQIANAVNRGEVVSE  139 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~----~~-------------~~~g~~i~~~l~~G~~ip~  139 (268)
                      -.+|-|.|...|||||+|+.|.+.| |...|+-||.+..+..    .+             ..+.+.+...+......|+
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~   83 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE   83 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence            3567888999999999999999998 6677887777644321    00             0123344444444333332


Q ss_pred             HHHHHHHHH-----HHHcCCc--cCccEEEEcCCcCC--HHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-------
Q 024390          140 DIIFGLLSK-----RLEDGYY--RGEIGFILDGLPRS--RIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-------  203 (268)
Q Consensus       140 ~~~~~ll~~-----~l~~~~~--~~~~g~IlDGfPr~--~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-------  203 (268)
                       ....++..     ...+...  ....-+++|||-..  ..|..      ..|..|++..+.+++.+|.+.+.       
T Consensus        84 -ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~y~p~~t  156 (225)
T KOG3308|consen   84 -AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTYYPPDDT  156 (225)
T ss_pred             -HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhcccccCCCCCC
Confidence             11111111     1111111  13445889998432  12222      35668999999999999984221       


Q ss_pred             ---HH-HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          204 ---KE-KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       204 ---~~-rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                         .- -.-.|.++.....  |.......-+|++.+-+..-..|...+
T Consensus       157 gyfd~~~~P~Y~~~~~~~~--d~~~h~~~flngdvs~e~~~~~v~~~i  202 (225)
T KOG3308|consen  157 GYFDPVVWPHYEKNFEEAR--DRSRHDSLFLNGDVSEEKLDDKVNESI  202 (225)
T ss_pred             ccccCccchHHHHHHHHHH--hhcccceeeecccchhhhchhhhhhhh
Confidence               00 0012222211110  111112345677777777777766666

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.42  E-value=0.00014  Score=68.90  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .+..|+|+||||+|||++|+.||+.++.+++.++
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            4467999999999999999999999999888776

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PHA03136 thymidine kinase; Provisional

Probab=97.41  E-value=0.0065  Score=56.76  Aligned_cols=25  Identities=24%  Similarity=0.173  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +-.+|.|.|+.|+||||.++.|.+.
T Consensus        35 ~~~rvyieG~~gvGKTT~~~~l~~~   59 (378)
T PHA03136         35 RLVLLYLDGPFGTGKTTTAKLLMEM   59 (378)
T ss_pred             eeEEEEEECCCcCCHHHHHHHHHhc
Confidence            4568999999999999999999883

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.40  E-value=9e-05  Score=68.85  Aligned_cols=28  Identities=25%  Similarity=0.220  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +.+.++|.|||||||||+++.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4567999999999999999999998865

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.40  E-value=0.00047  Score=61.57  Aligned_cols=29  Identities=28%  Similarity=0.308  Sum_probs=25.5

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +..+.+|.|.|+||+||||.|+.|+..+.
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~  107 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLS  107 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHh
Confidence            35678999999999999999999988763

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.38  E-value=0.0019  Score=57.93  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir  114 (268)
                      .|.|.|.+||||||+++.|++.++     ..+|+.|+..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            378999999999999999998774     35677777665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.37  E-value=0.00013  Score=58.17  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      |+|.|+||+|||++++.|++.++.++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcce
Confidence            79999999999999999999998655

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.37  E-value=0.00016  Score=69.55  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      .++..|+|+||+|||||++|..||++++...|+.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            456689999999999999999999999999999974

>PF05729 NACHT: NACHT domain

Probab=97.36  E-value=0.00026  Score=57.27  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++|.|+||+||||+++.++..+.
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            589999999999999999998763

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.36  E-value=0.00021  Score=67.73  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .+..|+|+||||+|||++|+.|++.++.+++.++
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD   82 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence            3467999999999999999999999998887775

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.35  E-value=0.00014  Score=65.78  Aligned_cols=31  Identities=29%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      |+|+||+|||||+++..|++.++..+||.|.
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            7999999999999999999999999999976

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.32  E-value=0.00018  Score=62.76  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ..+++.||||.||||+|+.+|+.+|....
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            46999999999999999999999987653

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00035  Score=63.75  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      -...|++.||||.|||++|+.||+++.+.
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            34579999999999999999999998754

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.30  E-value=0.016  Score=52.10  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=35.9

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----CccchhHHHHhh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQD  116 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~-----~~is~~dlir~~  116 (268)
                      ++.+.++..|++.|+-||||||.+++|..++..     -+|+++..+++.
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            556678899999999999999999999887632     257777777664

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.26  E-value=0.0012  Score=59.64  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.|+||+|||++|+.+++.+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4469999999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.23  E-value=0.0057  Score=54.17  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      -++|.|+||+|||+++..++..+   |  +.++++.+++...           +..+......    ...++ +.+.   
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l-----------~~~~~~~~~~----~~~~l-~~l~---  161 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM-----------KDTFSNSETS----EEQLL-NDLS---  161 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH-----------HHHHhhcccc----HHHHH-HHhc---
Confidence            58999999999999999999987   2  3456676766443           1111111111    11222 2232   


Q ss_pred             ccCccEEEEcCCcC---CHHHHHHHHhh------cCCCeEEEEecCHHHHHhhhhHHHHHHH
Q 024390          155 YRGEIGFILDGLPR---SRIQAEILDQL------AEIDLVVNFKCADNFIVTNRGGSLKEKL  207 (268)
Q Consensus       155 ~~~~~g~IlDGfPr---~~~qa~~l~~~------~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl  207 (268)
                        ...-+|||.+..   +..+.+.+..+      ..-..+|.=..+.+.+.+++.+++-.|+
T Consensus       162 --~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl  221 (244)
T PRK07952        162 --NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRM  221 (244)
T ss_pred             --cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHH
Confidence              345688897643   22333344332      1344577677888888877765554444

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.18  E-value=0.00037  Score=65.98  Aligned_cols=32  Identities=13%  Similarity=0.119  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ....+|+|+|++||||||+++.|++.+|...+
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            44578999999999999999999999998653

>PRK08116 hypothetical protein; Validated

Probab=97.16  E-value=0.0078  Score=53.96  Aligned_cols=36  Identities=17%  Similarity=0.196  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ  115 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~  115 (268)
                      -++|.|++|+|||.++..+++.+   +  +.+++..+++..
T Consensus       116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            48999999999999999999875   3  345677676654

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0063  Score=55.27  Aligned_cols=48  Identities=23%  Similarity=0.225  Sum_probs=36.2

Q ss_pred             CCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHHHhhc
Q 024390           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDL  117 (268)
Q Consensus        68 ~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dlir~~~  117 (268)
                      +.+....|-++  |++.||||.|||-+|+.+|-.-|-.+  ||..||+.+.+
T Consensus       158 lFtGkR~Pwrg--iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm  207 (439)
T KOG0739|consen  158 LFTGKRKPWRG--ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM  207 (439)
T ss_pred             hhcCCCCccee--EEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence            34433344444  89999999999999999999987655  55568888874

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.14  E-value=0.00051  Score=55.21  Aligned_cols=29  Identities=21%  Similarity=0.104  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .+..|++.|+.|+||||+++.+++.+|..
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45679999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.12  E-value=0.0017  Score=60.86  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ...++-||||+||||+|+.||...+..+.-+
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~   79 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL   79 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence            4579999999999999999999998776544

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.12  E-value=0.0056  Score=54.62  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      -++.|++.||||.|||..|+.||.+.+.+.+.+
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~v  182 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV  182 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence            356899999999999999999999999887765

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.11  E-value=0.0004  Score=61.21  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             EEcCCCCChhHHHHHHHHHhCC
Q 024390           83 FIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        83 I~G~pGSGKST~a~~La~~l~~  104 (268)
                      |+||+||||||+|+.+.+.+..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~   22 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES   22 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999998854

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.11  E-value=0.00038  Score=63.98  Aligned_cols=30  Identities=17%  Similarity=0.114  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      ..|+|.|+||+||||+++.||+.+|.+++.
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            359999999999999999999999987653

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.0036  Score=61.78  Aligned_cols=41  Identities=15%  Similarity=0.177  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL  117 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~  117 (268)
                      .++-|++.||||+|||++|+.||..-++.++++  .+++....
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v  509 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV  509 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence            344599999999999999999999887776666  46665554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.08  E-value=0.00056  Score=53.31  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.|+||+|||++++.+++.+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3469999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.02  E-value=0.009  Score=55.34  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|+|+|+||+||||.+..|+..+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999888765

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.01  E-value=0.0017  Score=54.22  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      ++|+|++|||||++|..++...+-
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~   25 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGG   25 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCC
Confidence            789999999999999999987553

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.00  E-value=0.00066  Score=62.56  Aligned_cols=30  Identities=13%  Similarity=0.171  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +.+|+|+|+|||||||+++.|+..+|.+++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            568999999999999999999999998763

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.023  Score=47.15  Aligned_cols=39  Identities=13%  Similarity=-0.054  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD  116 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~  116 (268)
                      +...++-|+.||||||+-..+-..+  ++.+|+.|.+..+.
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i   42 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI   42 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence            4567899999999999877654433  67788997777664

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.99  E-value=0.00068  Score=58.72  Aligned_cols=28  Identities=21%  Similarity=0.200  Sum_probs=23.7

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |+.| ++-.++|.|+||||||++|..++.
T Consensus        14 GGip-~gs~~li~G~~GsGKT~l~~q~l~   41 (226)
T PF06745_consen   14 GGIP-KGSVVLISGPPGSGKTTLALQFLY   41 (226)
T ss_dssp             TSEE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCC-CCcEEEEEeCCCCCcHHHHHHHHH
Confidence            5566 778899999999999999998653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.00078  Score=61.40  Aligned_cols=35  Identities=26%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl  112 (268)
                      +..|+|+||.+||||-+|-.||+++|.+.||.|.+
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            46799999999999999999999999999999864

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.97  E-value=0.0012  Score=57.83  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=23.9

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |+.| ++-.++|.|+||||||++|..++-
T Consensus        16 GG~~-~gs~~lI~G~pGsGKT~la~~~l~   43 (237)
T TIGR03877        16 GGIP-ERNVVLLSGGPGTGKSIFSQQFLW   43 (237)
T ss_pred             CCCc-CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            5666 788899999999999999987654

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.97  E-value=0.00079  Score=64.00  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ...|+|.||||+|||++|+.||+.++.+++.+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i  139 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA  139 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence            45699999999999999999999998876644

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.94  E-value=0.008  Score=54.05  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..|+|+|++|+||||.+..||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            345678899999999999999999876

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0015  Score=60.31  Aligned_cols=49  Identities=18%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHhhcCCCCh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQDLSPRSS  122 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir~~~~~~~~  122 (268)
                      |-.|.+|  |++.||||+|||-+|+.+|.+-+..+|-  ..+++++.+-.+..
T Consensus       181 GI~PPKG--VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR  231 (406)
T COG1222         181 GIDPPKG--VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR  231 (406)
T ss_pred             CCCCCCc--eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence            5555555  8999999999999999999999876654  46888887765543

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.92  E-value=0.0041  Score=59.60  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++..|+|+|++|+||||.+..||..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356789999999999999999999876

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0099  Score=54.39  Aligned_cols=35  Identities=17%  Similarity=0.089  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      +-+.|+|+|+.|||||-++--||.+|+...|+.+.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk   40 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK   40 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence            45689999999999999999999999998888753

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.89  E-value=0.00083  Score=63.40  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQ  115 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~  115 (268)
                      +..|+|.||||+|||++|+.+|+.++..++  +..+++..
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~  204 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK  204 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence            345999999999999999999999987654  44555543

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0098  Score=55.72  Aligned_cols=135  Identities=12%  Similarity=0.078  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      -|++.||||+|||-+|+.+|.+-|..++++  .++..+.                +|+   .+-++++|-+....+   .
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw----------------RGe---SEKlvRlLFemARfy---A  304 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW----------------RGE---SEKLVRLLFEMARFY---A  304 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh----------------ccc---hHHHHHHHHHHHHHh---C
Confidence            389999999999999999999998766554  3444443                121   233344443333222   1


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHH
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPV  237 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~e  237 (268)
                      ...+.||-       .+.|..-..-       -++.+.-+|+..       .+..+.+.+..-+.....+.++-+++=|+
T Consensus       305 PStIFiDE-------IDslcs~RG~-------s~EHEaSRRvKs-------ELLvQmDG~~~t~e~~k~VmVLAATN~PW  363 (491)
T KOG0738|consen  305 PSTIFIDE-------IDSLCSQRGG-------SSEHEASRRVKS-------ELLVQMDGVQGTLENSKVVMVLAATNFPW  363 (491)
T ss_pred             Cceeehhh-------HHHHHhcCCC-------ccchhHHHHHHH-------HHHHHhhccccccccceeEEEEeccCCCc
Confidence            22233331       1111110000       122233333311       22233333333222222355666677799


Q ss_pred             HHHHHHHHHHHhhcccccCC
Q 024390          238 ETWQGLLTALHLQHINAAYS  257 (268)
Q Consensus       238 ev~~~I~~~L~~~~~~~~~~  257 (268)
                      ++=+.++..|.......+++
T Consensus       364 diDEAlrRRlEKRIyIPLP~  383 (491)
T KOG0738|consen  364 DIDEALRRRLEKRIYIPLPD  383 (491)
T ss_pred             chHHHHHHHHhhheeeeCCC
Confidence            99999999999888888777

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.89  E-value=0.00084  Score=56.05  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +|+|.|+||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.87  E-value=0.0047  Score=50.70  Aligned_cols=156  Identities=19%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH--HHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF--GLLSKR  149 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~--~ll~~~  149 (268)
                      .++..|.|.|..||||||+|-.|.+.+.    ..++=-||-+|--++..  ++-+.++-.        +.+.  .-+.+.
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~D--L~F~a~dR~--------ENIRRigeVaKL   98 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKD--LGFKAEDRN--------ENIRRIGEVAKL   98 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccc--cCcchhhhh--------hhHHHHHHHHHH
Confidence            4788999999999999999999998763    22333345555544321  111111000        1111  111111


Q ss_pred             HHcCCccCccEEE-----EcCCcCCHHHHHHHHhhcCCC-eEEEEecCHHHHHhhhhHHHHHHH-----HHHHHHchHHH
Q 024390          150 LEDGYYRGEIGFI-----LDGLPRSRIQAEILDQLAEID-LVVNFKCADNFIVTNRGGSLKEKL-----EAYAELSKPLE  218 (268)
Q Consensus       150 l~~~~~~~~~g~I-----lDGfPr~~~qa~~l~~~~~~d-~vV~Ld~~~e~l~~Rl~~~~~~rl-----~~y~~~~~~l~  218 (268)
                      ..      ..|+|     |.-+-....++..|-.  .-+ +-||+++|.+++..|-+.-+-++-     +.|-..    -
T Consensus        99 FA------Dag~iciaSlISPYR~dRdacRel~~--~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGI----d  166 (207)
T KOG0635|consen   99 FA------DAGVICIASLISPYRKDRDACRELLP--EGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGI----D  166 (207)
T ss_pred             Hh------ccceeeeehhcCchhccHHHHHHhcc--CCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccC----C
Confidence            11      22222     2223334455554432  224 479999999999999865442222     222222    2


Q ss_pred             HHHHhC-C--cEEEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390          219 DYYQKQ-K--KLLEFQVGSAPVETWQGLLTALHLQHIN  253 (268)
Q Consensus       219 ~~y~~~-~--~l~~Ida~~s~eev~~~I~~~L~~~~~~  253 (268)
                      +-|+.+ +  .++.-+...++++..+.|.++|..+++.
T Consensus       167 dPYEaP~~cEi~l~~~~~~sp~~mae~iv~YL~~kg~l  204 (207)
T KOG0635|consen  167 DPYEAPLNCEIVLKSHESSSPEEMAEIIVSYLDNKGYL  204 (207)
T ss_pred             CcccCCCCcEEEEccCCCCCHHHHHHHHHHHHhhcChh
Confidence            224332 2  2222234467888999999999887653

>PF13245 AAA_19: Part of AAA domain

Probab=96.87  E-value=0.0012  Score=47.86  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=17.3

Q ss_pred             eEEEEEcCCCCChh-HHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKH-VYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKS-T~a~~La~~l  102 (268)
                      ..++|.|+|||||| |+++.++..+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            35777999999999 5555555543

>PLN02796 D-glycerate 3-kinase

Probab=96.87  E-value=0.00096  Score=61.77  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dli  113 (268)
                      .++.+|.|.|++||||||+++.|+..+.     ...|++++..
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            3568899999999999999999999874     3456776655

>PRK04328 hypothetical protein; Provisional

Probab=96.86  E-value=0.0015  Score=57.79  Aligned_cols=29  Identities=14%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++-.++|.|+||+|||++|..++..
T Consensus        18 GGip-~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         18 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             CCCc-CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4555 6788999999999999999886543

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.82  E-value=0.001  Score=64.53  Aligned_cols=32  Identities=13%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++-|++.||||+|||.+|+.+|..+|.+.+.+
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34589999999999999999999999876554

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.82  E-value=0.0011  Score=61.89  Aligned_cols=41  Identities=12%  Similarity=0.149  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDL  117 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~  117 (268)
                      .+..+.|.||||+|||.+|+.+|+.+|+.  .+|.++|+....
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v  189 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA  189 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence            45678999999999999999999999876  456667775543

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00069  Score=68.21  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ  115 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~  115 (268)
                      ++|.||||+|||-+|+.+|.+-|++++++.  +.+.-
T Consensus       347 vLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~  383 (774)
T KOG0731|consen  347 VLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM  383 (774)
T ss_pred             eEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence            899999999999999999999999998773  55443

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.00095  Score=66.43  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC--CccchhH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSS  111 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~--~~is~~d  111 (268)
                      .+++++|+.||||.|||++++.+|+.+|-  +.+|+|-
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG  385 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG  385 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence            57789999999999999999999999864  5566654

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.80  E-value=0.0012  Score=61.56  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +.-++|.||||+|||++++.+++.++..++.+
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            34599999999999999999999998765443

Many proteins may score above the trusted cutoff because an internal

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=96.80  E-value=0.021  Score=47.32  Aligned_cols=163  Identities=14%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhhcCCCCh-hHHH-HH-H-HHhccCc-cc---H---HHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLSPRSS-LHKQ-IA-N-AVNRGEV-VS---E---DIIFG  144 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~~~~~~~-~g~~-i~-~-~l~~G~~-ip---~---~~~~~  144 (268)
                      .+.+|++-|.+-+|||++|..+.+.+.-+...++ |++.+.+++... .+.- .. . ....|+. ++   .   +....
T Consensus        22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~  101 (205)
T COG3896          22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMH  101 (205)
T ss_pred             CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHH
Confidence            6778999999999999999999998866655554 667666653210 0000 00 0 0111111 10   1   11111


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHH-HHHHHhhcCCC-eEEEEecCHHHHHhhhhHHHHHHHH-----HHHHHchHH
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQLAEID-LVVNFKCADNFIVTNRGGSLKEKLE-----AYAELSKPL  217 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~q-a~~l~~~~~~d-~vV~Ld~~~e~l~~Rl~~~~~~rl~-----~y~~~~~~l  217 (268)
                      -....|... ...+..+|.|.+-.+..+ .+.+..+..++ .+|-..||.|++.+|-..+- .|.-     .|+.-..+ 
T Consensus       102 ~~r~ai~a~-ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~-dR~pG~~rg~~r~vHa~-  178 (205)
T COG3896         102 SRRRAIRAY-ADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG-DRHPGWNRGSARAVHAD-  178 (205)
T ss_pred             HHHHHHHHH-hccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC-CcCcchhhhhHHHhcCC-
Confidence            111222221 124667888887666554 34455444444 58889999999999862210 1111     11111111 


Q ss_pred             HHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHH
Q 024390          218 EDYYQKQKKLLEFQVG-SAPVETWQGLLTALH  248 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~  248 (268)
                            ...-+.+|++ .+|.|....|.+.++
T Consensus       179 ------~~YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         179 ------AEYDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             ------cceeeeecccCCCHHHHHHHHHHHhc
Confidence                  1123578876 569999888876553

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.80  E-value=0.001  Score=54.10  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|+.||||||+++.|...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            57999999999999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.77  E-value=0.0013  Score=62.53  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +..|+|.||||+|||++|+.||+.++.+++
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~  145 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFA  145 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence            457999999999999999999999987764

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.77  E-value=0.0013  Score=62.36  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +.-|+|.||||+|||++++.+|...+..++.+
T Consensus       179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            45599999999999999999999998776544

>TIGR00959 ffh signal recognition particle protein

Probab=96.75  E-value=0.016  Score=55.37  Aligned_cols=26  Identities=15%  Similarity=0.089  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..+++.|++||||||.+..||..+
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            45689999999999999999998764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.74  E-value=0.0015  Score=59.00  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      ...++|.||||+|||++++.+++.++..
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~   57 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVN   57 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3458999999999999999999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK09087 hypothetical protein; Validated

Probab=96.74  E-value=0.0014  Score=57.32  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=30.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli  113 (268)
                      +.++|.|++|||||++++.+++..+..+++.+++.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~   79 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG   79 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence            45899999999999999999999998888886433

>PHA02244 ATPase-like protein

Probab=96.74  E-value=0.0012  Score=61.78  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli  113 (268)
                      ..|+|.||||+|||++++.|+..++.+++.+..++
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            34899999999999999999999999888776443

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.72  E-value=0.025  Score=52.30  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      ..++|.|++|+|||.++..+|+.+     .+.++++.+++.....          .......    +. ... .+.+.  
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~----------~~~~~~~----~~-~~~-~~~l~--  245 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE----------IRFNNDK----EL-EEV-YDLLI--  245 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH----------HHhccch----hH-HHH-HHHhc--
Confidence            569999999999999999999875     3456777777655310          0011110    00 011 12222  


Q ss_pred             CccCccEEEEcCCc---CCHHHHHHHHhh------cCCCeEEEEecCHHHHHhhhhHHHHHHH
Q 024390          154 YYRGEIGFILDGLP---RSRIQAEILDQL------AEIDLVVNFKCADNFIVTNRGGSLKEKL  207 (268)
Q Consensus       154 ~~~~~~g~IlDGfP---r~~~qa~~l~~~------~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl  207 (268)
                         ...-+|||.+-   .+......|..+      ..-..+|.=+.+++.+.+++.+++..|+
T Consensus       246 ---~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL  305 (329)
T PRK06835        246 ---NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRL  305 (329)
T ss_pred             ---cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence               24568899762   232222223222      1334677778888888777755555544

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.72  E-value=0.0014  Score=63.65  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchh----HHHHhhcCCCChhHHHHHHHHhccCcc-----
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS----SIVRQDLSPRSSLHKQIANAVNRGEVV-----  137 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~----dlir~~~~~~~~~g~~i~~~l~~G~~i-----  137 (268)
                      |+.| ++-.++|.|+||+||||++..++...   |  ..+++..    ++++...    .+|-.+.+++.+|.+.     
T Consensus       258 GG~~-~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~----~lg~~~~~~~~~g~l~~~~~~  332 (484)
T TIGR02655       258 GGFF-KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAY----SWGIDFEEMEQQGLLKIICAY  332 (484)
T ss_pred             CCcc-CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH----HcCCChHHHhhCCcEEEEEcc
Confidence            3344 78889999999999999999987754   3  4556654    3444432    2232344455555321     


Q ss_pred             -----cHHHHHHHHHHHHHcCCccCccEEEEcCC
Q 024390          138 -----SEDIIFGLLSKRLEDGYYRGEIGFILDGL  166 (268)
Q Consensus       138 -----p~~~~~~ll~~~l~~~~~~~~~g~IlDGf  166 (268)
                           +++ ....+.+.+.+.   ..+-+|||++
T Consensus       333 p~~~~~~~-~~~~i~~~i~~~---~~~~vvIDsi  362 (484)
T TIGR02655       333 PESAGLED-HLQIIKSEIADF---KPARIAIDSL  362 (484)
T ss_pred             cccCChHH-HHHHHHHHHHHc---CCCEEEEcCH
Confidence                 133 334444555543   3567888875

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.71  E-value=0.0014  Score=56.41  Aligned_cols=37  Identities=8%  Similarity=0.065  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV  113 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dli  113 (268)
                      .+..++|.|++|+|||++++.+++...     +.+++..++.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            445699999999999999999998652     3455554443

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.70  E-value=0.00086  Score=53.53  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ++|.|+||.||||+++.||+..|..+.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCcee
Confidence            789999999999999999999987543

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.70  E-value=0.0017  Score=49.93  Aligned_cols=23  Identities=13%  Similarity=0.044  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +|+|+|++||||||+.+.|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.68  E-value=0.0015  Score=63.46  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .-++|.||||+|||++++.||...+.+++.+
T Consensus        89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            3499999999999999999999998876554

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.67  E-value=0.0013  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      |.|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999988653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.67  E-value=0.0022  Score=50.79  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .+..|++.|+-||||||+++.+++.+|..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            56789999999999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.65  E-value=0.02  Score=54.66  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|.|+|++||||||.+..||..+
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999876

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.64  E-value=0.0028  Score=55.30  Aligned_cols=29  Identities=14%  Similarity=-0.034  Sum_probs=24.4

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++-.++|.|+||||||+++..++..
T Consensus        20 gG~~-~g~~~~i~G~~GsGKt~l~~~~~~~   48 (234)
T PRK06067         20 GGIP-FPSLILIEGDHGTGKSVLSQQFVYG   48 (234)
T ss_pred             CCCc-CCcEEEEECCCCCChHHHHHHHHHH
Confidence            4556 7788999999999999999998653

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=96.62  E-value=0.11  Score=44.48  Aligned_cols=20  Identities=5%  Similarity=0.140  Sum_probs=18.8

Q ss_pred             cCCCeEEEEecCHHHHHhhh
Q 024390          180 AEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       180 ~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ..+|.+|||.+++|++.+|+
T Consensus       152 v~~dgiIYLrasPetc~~Ri  171 (244)
T KOG4235|consen  152 VSLDGIIYLRASPETCYKRI  171 (244)
T ss_pred             cccceEEEeecChHHHHHHH
Confidence            47899999999999999999

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.61  E-value=0.0021  Score=55.00  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      |..|+|+||+|+||||.+.+||.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            45799999999999999999998873

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.60  E-value=0.002  Score=61.75  Aligned_cols=32  Identities=13%  Similarity=0.157  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +..++|.||||+|||++++.+|..++..++.+
T Consensus       217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V  248 (438)
T PTZ00361        217 PKGVILYGPPGTGKTLLAKAVANETSATFLRV  248 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence            34588999999999999999999988765543

>PRK06620 hypothetical protein; Validated

Probab=96.60  E-value=0.0016  Score=56.45  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      ..++|.||||||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            358999999999999999999988765544

>PRK04195 replication factor C large subunit; Provisional

Probab=96.58  E-value=0.0018  Score=62.70  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ...++|.||||+||||+++.|++.+++.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            45699999999999999999999999876654

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.58  E-value=0.0026  Score=55.15  Aligned_cols=35  Identities=9%  Similarity=0.066  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dli  113 (268)
                      ..++|.|++|+|||++++.++...     .+.+++..++.
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            458999999999999999999876     55666665543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.58  E-value=0.0087  Score=56.50  Aligned_cols=27  Identities=11%  Similarity=0.201  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++..|+++||.|+||||.+..||..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998763

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.57  E-value=0.0023  Score=58.26  Aligned_cols=33  Identities=15%  Similarity=0.019  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      ++.|+|+||.|||||.+|-.||++ +...||.|.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS   36 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS   36 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence            347999999999999999999999 458888874

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0018  Score=64.58  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSI  112 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dl  112 (268)
                      ..|+++||.||||.|||++++.+|..+|  |..+|+|-+
T Consensus       436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~  474 (906)
T KOG2004|consen  436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM  474 (906)
T ss_pred             CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence            5789999999999999999999999996  456676644

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.56  E-value=0.0038  Score=54.64  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=21.2

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +.| ++-.++|.|+||+||||+|..++.
T Consensus        20 gi~-~g~~~~i~G~~G~GKTtl~~~~~~   46 (230)
T PRK08533         20 GIP-AGSLILIEGDESTGKSILSQRLAY   46 (230)
T ss_pred             CCC-CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344 566899999999999999865543

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.56  E-value=0.003  Score=51.68  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQD  116 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~  116 (268)
                      +|.+++++.|.||+||||+...|+..=-..+...+ ++++++
T Consensus         7 nR~~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~e   48 (183)
T COG3911           7 NRHKRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALE   48 (183)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHH
Confidence            45678999999999999999999975322332222 455443

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.56  E-value=0.05  Score=56.15  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      -++|.|++|+||||+++.|++.+++.
T Consensus        39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         39 AYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            38999999999999999999999864

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0021  Score=58.66  Aligned_cols=32  Identities=28%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ...-+|+++||.|||||-+|+-||+.+++|+-
T Consensus        95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa  126 (408)
T COG1219          95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFA  126 (408)
T ss_pred             eeeccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence            34557999999999999999999999999864

>PRK06526 transposase; Provisional

Probab=96.55  E-value=0.0028  Score=56.47  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ  115 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~  115 (268)
                      .+..++|.||||+|||+++..|+...   |  +.++++.+++.+
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            45679999999999999999997754   2  334555555544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.54  E-value=0.0023  Score=52.98  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+++.|+|||||||++..++..+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~   24 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998875

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.53  E-value=0.0021  Score=61.00  Aligned_cols=38  Identities=13%  Similarity=0.113  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dli  113 (268)
                      .++.+|.|.|+.||||||+++.|...+.     ...|++|+..
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            4668899999999999999999987663     4567777765

>PRK13695 putative NTPase; Provisional

Probab=96.53  E-value=0.0023  Score=53.16  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+|+|.|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999987765

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.52  E-value=0.003  Score=53.88  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~  110 (268)
                      |+.| ++..+.|.|+||||||++|..++...     ...+|++.
T Consensus         7 GGi~-~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237         7 GGVE-RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            4455 78899999999999999999988643     24566664

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK10867 signal recognition particle protein; Provisional

Probab=96.52  E-value=0.024  Score=54.24  Aligned_cols=26  Identities=27%  Similarity=0.204  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..|+++|++||||||.+..||..+
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l  124 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            45789999999999999888888754

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.52  E-value=0.0023  Score=56.53  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ...++|.|++|+||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            34689999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.51  E-value=0.0035  Score=60.85  Aligned_cols=27  Identities=15%  Similarity=0.145  Sum_probs=23.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLS   99 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La   99 (268)
                      |+.| ++..++|.|+|||||||+|..++
T Consensus        16 GGlp-~g~~~Li~G~pGsGKT~la~qfl   42 (484)
T TIGR02655        16 GGLP-IGRSTLVSGTSGTGKTLFSIQFL   42 (484)
T ss_pred             CCCC-CCeEEEEEcCCCCCHHHHHHHHH
Confidence            5566 78889999999999999999874

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.51  E-value=0.0025  Score=58.53  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ..++|.||||+|||++++.+|+.++...
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            3589999999999999999999998754

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.51  E-value=0.0024  Score=60.69  Aligned_cols=31  Identities=16%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ..++|.||||+||||+++.|++..+..++.+
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4688999999999999999999887665543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.49  E-value=0.0027  Score=62.08  Aligned_cols=30  Identities=17%  Similarity=0.095  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ..++++.|||||||||..+.||+.+|+.++
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            347899999999999999999999998654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.49  E-value=0.0024  Score=55.36  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|-.++|+||+||||||+.+-|..
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4677899999999999999998864

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.49  E-value=0.0014  Score=57.28  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      -+|+|||||||||.|.-..+-+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHH
Confidence            5789999999999998877755

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.47  E-value=0.062  Score=54.71  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|.|++|+||||+++.|++.+++.
T Consensus        40 AyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         40 AYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            47899999999999999999999864

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.43  E-value=0.0024  Score=62.82  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +++++++.||||+||||+++.|++.+
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHH
Confidence            56789999999999999999999865

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.43  E-value=0.0043  Score=49.36  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=26.3

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .|.++..+.+-|++|+||+.+++.||+.+
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            56788899999999999999999999973

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK06893 DNA replication initiation factor; Validated

Probab=96.42  E-value=0.0031  Score=55.10  Aligned_cols=32  Identities=16%  Similarity=0.139  Sum_probs=26.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~  110 (268)
                      +.++|.|+||+|||++++.++..+     +..++++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            468999999999999999999875     45566553

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.42  E-value=0.0026  Score=52.51  Aligned_cols=26  Identities=15%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|.|++|+|||++.+.+.+.+
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999887765

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.42  E-value=0.0033  Score=52.77  Aligned_cols=27  Identities=15%  Similarity=-0.108  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +++.+.|+|++||||||+++.|...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            556899999999999999999998774

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.42  E-value=0.0036  Score=52.67  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD  116 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~  116 (268)
                      ++..++|.|+||+|||.+|..++..+     .+.++++.+++.+.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            45679999999999999999998753     34677888877664

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09183 transposase/IS protein; Provisional

Probab=96.39  E-value=0.0035  Score=55.92  Aligned_cols=37  Identities=16%  Similarity=0.146  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV  113 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dli  113 (268)
                      ++..++|.||||+|||+++..|+...   |  +.+++..+++
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            45679999999999999999997653   3  2344554544

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.38  E-value=0.0027  Score=50.83  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++|.|+||+||||++..++...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998875

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.38  E-value=0.0031  Score=56.79  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIV  113 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~-is~~dli  113 (268)
                      .+++.||||-||||+|..+|..+|... +..|..+
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l   88 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL   88 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence            499999999999999999999998753 3334444

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.37  E-value=0.0026  Score=60.44  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      |+|.|+||+||||.|+.||+.|.
T Consensus       266 ILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         266 ILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             eEEecCCCCChhHHHHHHHHHHH
Confidence            89999999999999999999884

>cd04163 Era Era subfamily

Probab=96.37  E-value=0.0031  Score=50.24  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+++|++||||||+...|...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=96.37  E-value=0.0026  Score=58.86  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             ccCCcCCCcccccccccCCcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           35 AAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|-|++.   .-.|++.+.|...+.+...  .     ..+..++|.||||+|||++++.+.+.+
T Consensus         7 ~l~~~~~p~~l---~gRe~e~~~l~~~l~~~~~--~-----~~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928         7 LLEPDYVPDRI---VHRDEQIEELAKALRPILR--G-----SRPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             hCCCCCCCCCC---CCcHHHHHHHHHHHHHHHc--C-----CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45677777632   2346677777665543221  1     234569999999999999999998764

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>CHL00176 ftsH cell division protein; Validated

Probab=96.37  E-value=0.0035  Score=62.82  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +.-++|.||||+|||++|+.+|...+.+++.+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            34599999999999999999999998876654

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0033  Score=57.88  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .+++|+++||.|.|||-+|++||+.-|.|+|.+
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            567899999999999999999999988887654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.36  E-value=0.0033  Score=48.42  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      +|+|+|.||+||||+.+.|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.36  E-value=0.0031  Score=68.94  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVR  114 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir  114 (268)
                      -|+++||||+|||.+|+.||...+++.|+  ..+++.
T Consensus      1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            49999999999999999999999987654  457764

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.35  E-value=0.007  Score=53.85  Aligned_cols=83  Identities=17%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH--hCC-----CccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL--LEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSEDIIFG  144 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~--l~~-----~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~~~~~~  144 (268)
                      ....|+|.|++|+||||+|+.+++.  ..-     .+++.+.-     .....+...+...+...     .....+....
T Consensus        18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~   92 (287)
T PF00931_consen   18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEELQD   92 (287)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHH
T ss_pred             CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccccccccccccccccccccccccccccc
Confidence            4567999999999999999999977  221     12222110     01112333344444333     1123444566


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcC
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPR  168 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr  168 (268)
                      .+.+.+..    ...-+|+|+...
T Consensus        93 ~l~~~L~~----~~~LlVlDdv~~  112 (287)
T PF00931_consen   93 QLRELLKD----KRCLLVLDDVWD  112 (287)
T ss_dssp             HHHHHHCC----TSEEEEEEEE-S
T ss_pred             cchhhhcc----ccceeeeeeecc
Confidence            66666664    245678898743

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.35  E-value=0.0045  Score=51.78  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      ..++++||+|+|||.+|+.|++.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999884

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.35  E-value=0.078  Score=53.18  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      -++|.|++|+||||+++.|++.+++
T Consensus        40 A~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         40 AYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4799999999999999999999987

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.34  E-value=0.004  Score=57.28  Aligned_cols=27  Identities=11%  Similarity=0.081  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..|.|+||+||||||.+..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356789999999999999999999876

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.34  E-value=0.003  Score=55.38  Aligned_cols=33  Identities=9%  Similarity=-0.033  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS  111 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~d  111 (268)
                      ..++|.||+|+|||++++.+++...     +.+++.++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            3689999999999999999998654     45666644

>TIGR00101 ureG urease accessory protein UreG

Probab=96.33  E-value=0.0039  Score=53.38  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +.+|.|+|++||||||+.+.+...+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            35799999999999999999988753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.33  E-value=0.0035  Score=53.52  Aligned_cols=24  Identities=8%  Similarity=0.062  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .|+|.||+||||||+.+.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            589999999999999999887764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=96.32  E-value=0.32  Score=42.71  Aligned_cols=164  Identities=8%  Similarity=0.034  Sum_probs=82.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH---HhhcCCCChhHHHHHHHHhccCc--ccHHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSKRLE  151 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli---r~~~~~~~~~g~~i~~~l~~G~~--ip~~~~~~ll~~~l~  151 (268)
                      .+..|+|.|..||||+...+.|.+.++-..+.+-.+-   .++. ...-++..-+..=..|+.  .....-...+..++.
T Consensus        30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~rv~  108 (230)
T TIGR03707        30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVERVM  108 (230)
T ss_pred             CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHHHhc
Confidence            5789999999999999999999999865544431111   0000 011112111111122322  112222233333333


Q ss_pred             cCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------------HHHHHHHHH
Q 024390          152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAYA  211 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------------~~~rl~~y~  211 (268)
                      .. + ..     ..+.+...+...|++.    +..-+-+||+++.++-.+|+.++                ..++.+.|.
T Consensus       109 ~~-~-~~-----~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y~  181 (230)
T TIGR03707       109 GF-C-TD-----EEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDYS  181 (230)
T ss_pred             CC-C-CH-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHH
Confidence            21 0 00     0011122344455543    23346899999999999999332                233445555


Q ss_pred             HHchHHHHHHHh-CCcEEEEeCCCCHHH---HHHHHHHHHH
Q 024390          212 ELSKPLEDYYQK-QKKLLEFQVGSAPVE---TWQGLLTALH  248 (268)
Q Consensus       212 ~~~~~l~~~y~~-~~~l~~Ida~~s~ee---v~~~I~~~L~  248 (268)
                      +....++..=+. ...+++|+++..--.   |.+-|.+.|.
T Consensus       182 ~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~  222 (230)
T TIGR03707       182 RAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLD  222 (230)
T ss_pred             HHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCC
Confidence            544444332221 235899998754332   4444444443

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.32  E-value=0.0042  Score=55.37  Aligned_cols=38  Identities=13%  Similarity=0.042  Sum_probs=29.0

Q ss_pred             CCCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 024390           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM  109 (268)
Q Consensus        71 ~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~  109 (268)
                      .|+.| ++..++|.|+||+|||++|..++...     ...++++
T Consensus        30 ~GGip-~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~   72 (259)
T TIGR03878        30 LGGIP-AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV   72 (259)
T ss_pred             CCCeE-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            35566 78889999999999999999986642     3345665

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0027  Score=62.35  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL  117 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~  117 (268)
                      =|+++||||||||-+|+.+|.+-|..+|++  .+|+-...
T Consensus       547 GvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV  586 (802)
T KOG0733|consen  547 GVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV  586 (802)
T ss_pred             ceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence            389999999999999999999988877776  36765543

>cd01394 radB RadB

Probab=96.31  E-value=0.0048  Score=53.03  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=25.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++.| ++..+.|.|+|||||||+|..++...
T Consensus        14 GGi~-~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          14 GGVE-RGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             CCcc-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4455 77889999999999999999998764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PLN03025 replication factor C subunit; Provisional

Probab=96.30  E-value=0.0038  Score=57.20  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +.++|.||||+||||+++.+|+.+.
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHh
Confidence            3588999999999999999999873

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.30  E-value=0.004  Score=50.36  Aligned_cols=24  Identities=17%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++|.|+|+.+|||||+++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999998876

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.29  E-value=0.0028  Score=52.58  Aligned_cols=32  Identities=22%  Similarity=0.140  Sum_probs=27.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC-CCccchhHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI  112 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~-~~~is~~dl  112 (268)
                      |+=++.+||||||+|..|++.|| +.||--|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            45578999999999999999999 999877665

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.28  E-value=0.0038  Score=52.61  Aligned_cols=27  Identities=11%  Similarity=0.100  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..++|+|++||||||+.+.|...+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            466799999999999999999987653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.015  Score=58.17  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHhhcC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLS  118 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~~~~  118 (268)
                      .-|++.||||+|||-++..+|...++.+||+.  +++.+.+.
T Consensus       702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG  743 (952)
T KOG0735|consen  702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG  743 (952)
T ss_pred             cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence            34999999999999999999999999998884  77777653

>PRK04296 thymidine kinase; Provisional

Probab=96.27  E-value=0.0042  Score=52.70  Aligned_cols=25  Identities=8%  Similarity=-0.193  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..+++.|+||+||||.+..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999998876

>PRK06921 hypothetical protein; Provisional

Probab=96.25  E-value=0.095  Score=46.95  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh----CC--CccchhHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL----EV--PRISMSSIVRQ  115 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l----~~--~~is~~dlir~  115 (268)
                      +..++|.|+||+|||.++..+++.+    |.  .+++..+++..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~  160 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD  160 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence            4569999999999999999998864    22  35555555443

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.25  E-value=0.0046  Score=47.83  Aligned_cols=23  Identities=22%  Similarity=0.030  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLS   99 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La   99 (268)
                      .+..++|.|++||||||+++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            46779999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK08181 transposase; Validated

Probab=96.25  E-value=0.0043  Score=55.73  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD  116 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~  116 (268)
                      .+..++|.||||+|||.++..++...   |  +.++++.+++.+.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            45579999999999999999998643   3  5567777777654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.24  E-value=0.0044  Score=61.98  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ..++.+++||||.||||+|..+|+.-|+.++.+
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            345689999999999999999999999987765

>TIGR00763 lon ATP-dependent protease La

Probab=96.24  E-value=0.0038  Score=64.00  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +++.+++.||||+|||++|+.||+.++..++
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            4557999999999999999999999976654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd04155 Arl3 Arl3 subfamily

Probab=96.23  E-value=0.004  Score=50.91  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|++||||||+.+.|...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            4578999999999999999999764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK13768 GTPase; Provisional

Probab=96.22  E-value=0.0046  Score=54.92  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++.++|.|++||||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4679999999999999999998776

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.21  E-value=0.0038  Score=60.84  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      ..++|.||||+|||++++.+++.++..
T Consensus       217 ~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       217 KGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             cceEEECCCCCcHHHHHHHHHHhhccc
Confidence            359999999999999999999998654

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.21  E-value=0.0038  Score=57.79  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHhhc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQDL  117 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dlir~~~  117 (268)
                      .|.-|+|.||||+|||.+|-.+|+.+|    |+-+|.++++..+.
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~  108 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV  108 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence            456799999999999999999999997    34455566665554

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.17  E-value=0.0045  Score=63.10  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ  115 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~  115 (268)
                      -|+|.||||+|||++|+.||...+..++++  .+++..
T Consensus       489 giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~  526 (733)
T TIGR01243       489 GVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK  526 (733)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence            489999999999999999999998876654  455544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.17  E-value=0.0049  Score=56.24  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++|.||||+||||+++.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999999874

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.17  E-value=0.006  Score=59.49  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM  109 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~  109 (268)
                      ++.| ++-.++|.|+||+|||+++..++...     ++.++++
T Consensus       268 GG~~-~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~  309 (509)
T PRK09302        268 GGFF-RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAF  309 (509)
T ss_pred             CCCC-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            4455 67789999999999999999887543     3455555

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.0038  Score=57.82  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL  117 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~  117 (268)
                      +-|++.||||+|||-+|+++|++-|..+|++  +.+..+++
T Consensus       128 kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf  168 (386)
T KOG0737|consen  128 KGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF  168 (386)
T ss_pred             ccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence            4499999999999999999999998876655  45555543

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.15  E-value=0.0056  Score=59.27  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      ..++|.||||+||||+|+.+|+.++..
T Consensus        37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~   63 (472)
T PRK14962         37 HAYIFAGPRGTGKTTVARILAKSLNCE   63 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            348999999999999999999998763

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.14  E-value=0.0039  Score=53.68  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      -.++|.|+||+|||++|+++...+
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhC
Confidence            369999999999999999999865

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.14  E-value=0.0048  Score=57.67  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      -++|.||||+||||+|+.+++.+++.
T Consensus        40 ~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         40 AWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            47999999999999999999998753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.14  E-value=0.0041  Score=49.14  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            56789999999999999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0045  Score=60.04  Aligned_cols=37  Identities=19%  Similarity=0.172  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQD  116 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~  116 (268)
                      .+++.||||+|||.+|+.+|...+.++++.  .+++-+.
T Consensus       278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~  316 (494)
T COG0464         278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW  316 (494)
T ss_pred             eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence            699999999999999999999777666554  4555444

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.09  E-value=0.0053  Score=49.64  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      +|+|+|+||+||||+.+++..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999875

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.038  Score=53.80  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +=|++.||||.|||-+|+.+|-+-|++++.+
T Consensus       338 KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  338 KGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             CceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            3499999999999999999999999998765

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.08  E-value=0.007  Score=55.07  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|.|.|+|||||||++..|+..+
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999988865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.004  Score=59.09  Aligned_cols=29  Identities=14%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .++.||||+||||+..++|..+++...++
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            79999999999999999999999876655

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.0046  Score=57.19  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli  113 (268)
                      ..|-.++|.||+||||||+-+.||   |+.-++.|++.
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~   61 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGEIL   61 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEE
Confidence            466789999999999999999999   55555555543

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.06  E-value=0.0053  Score=57.28  Aligned_cols=41  Identities=32%  Similarity=0.383  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC--CC--ccchhHHHHhhc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VP--RISMSSIVRQDL  117 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~--~~--~is~~dlir~~~  117 (268)
                      -+.-|+|.||||+|||.+|-.+|+.+|  .|  .++..++...++
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~   93 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV   93 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence            467799999999999999999999997  34  455556665543

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.05  E-value=0.0065  Score=56.18  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++.+|.|.|+|||||||++..|...+
T Consensus        55 ~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         55 NALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999987766

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.04  E-value=0.006  Score=48.80  Aligned_cols=23  Identities=13%  Similarity=0.102  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.||+||||+..++...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.04  E-value=0.0051  Score=58.93  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..|++.|+||+|||++|+.|+..++
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            356799999999999999999999875

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.04  E-value=0.0052  Score=56.51  Aligned_cols=30  Identities=30%  Similarity=0.441  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      .+..+++.|+||+|||++++.+|+.++.++
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~   71 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGLPF   71 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            344599999999999999999999998654

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=96.03  E-value=0.29  Score=47.63  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=81.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH---HhhcCCCChhHHHHHHHHhccCcc--cHHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL  150 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli---r~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ll~~~l  150 (268)
                      ..+..|+|.|..||||+++.+.|.+.++-..+.+-.+-   .++ ....-++..-+..=..|+..  ....-..++..++
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE-~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlverv  116 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEE-RERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIERL  116 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHH-hcCcHHHHHHHhCCCCCeEEEEcCcccchhhHHHh
Confidence            46789999999999999999999998854433321100   000 00111122111111223221  1112222222222


Q ss_pred             HcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------------HHHHHHHH
Q 024390          151 EDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAY  210 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------------~~~rl~~y  210 (268)
                      ... + ..     +-+.+...+...|++.    +..-+-+||+++.++-.+|+.++                ..++.+.|
T Consensus       117 ~g~-~-~~-----~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~wd~Y  189 (493)
T TIGR03708       117 EGR-I-DE-----AKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKVYDRY  189 (493)
T ss_pred             cCC-C-CH-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHhHHHH
Confidence            211 0 00     0011112234445543    23346899999999999999332                23445566


Q ss_pred             HHHchHHHHHHHh-CCcEEEEeCCCCH---HHHHHHHHHHHHh
Q 024390          211 AELSKPLEDYYQK-QKKLLEFQVGSAP---VETWQGLLTALHL  249 (268)
Q Consensus       211 ~~~~~~l~~~y~~-~~~l~~Ida~~s~---eev~~~I~~~L~~  249 (268)
                      ......+...=+. ..-+++|+++..-   -.|.+-|.+.|..
T Consensus       190 ~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~  232 (493)
T TIGR03708       190 RKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRA  232 (493)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence            5554444332211 2368999987542   2355555555543

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.03  E-value=0.007  Score=52.48  Aligned_cols=29  Identities=17%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |+.| ++..+.|.|+||||||++|..++-.
T Consensus        14 GGi~-~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          14 GGIE-TGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3444 7889999999999999999999743

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.01  E-value=0.0045  Score=53.96  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      ..+..++|.|+||+||||+|+.|+.  ...+++.+
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d   42 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFD   42 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCC--CCEEEecc
Confidence            3456799999999999999999973  23344444

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.01  E-value=0.0054  Score=62.49  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +..|+|.||||+|||++++.|++.++..++.+
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence            34599999999999999999999998765543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.01  E-value=0.0054  Score=59.26  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|.||||+||||+|+.||+.++..
T Consensus        42 a~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         42 AYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            48999999999999999999999874

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.01  E-value=0.0057  Score=62.72  Aligned_cols=31  Identities=16%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ++..++|.||||+||||+++.+++.++..++
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~  378 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYV  378 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5668999999999999999999999987654

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.00  E-value=0.0074  Score=49.92  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +.+.|+|++||||||+++.|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999863

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PHA02624 large T antigen; Provisional

Probab=96.00  E-value=0.0071  Score=59.79  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +...|+|.||||+||||++..|.+.+|-..+++
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            455799999999999999999999996556665

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.99  E-value=0.0071  Score=54.61  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|+|+||.|+||||.+..|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998765

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.041  Score=55.57  Aligned_cols=37  Identities=14%  Similarity=0.202  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHhh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQD  116 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~~  116 (268)
                      =|++.||||+|||-+|+.+|-++++.++|+.  +|+-..
T Consensus       707 GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY  745 (953)
T KOG0736|consen  707 GILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY  745 (953)
T ss_pred             eeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence            3999999999999999999999998888873  555433

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.98  E-value=0.11  Score=49.39  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..|.+.|--||||||-|-.||.+|
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~l  124 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYL  124 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHH
Confidence            456789999999999999999999887

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=95.98  E-value=0.0064  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |.+|+++|++|+||||+...|...
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PTZ00035 Rad51 protein; Provisional

Probab=95.97  E-value=0.012  Score=54.46  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=24.1

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |+.| .+..+.|.|+||||||++|..++-
T Consensus       113 GGi~-~G~iteI~G~~GsGKT~l~~~l~~  140 (337)
T PTZ00035        113 GGIE-TGSITELFGEFRTGKTQLCHTLCV  140 (337)
T ss_pred             CCCC-CCeEEEEECCCCCchhHHHHHHHH
Confidence            4555 788899999999999999999874

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=95.97  E-value=0.44  Score=42.71  Aligned_cols=169  Identities=11%  Similarity=0.007  Sum_probs=84.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH---HhhcCCCChhHHHHHHHHhccCcc--cHHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRLE  151 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli---r~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ll~~~l~  151 (268)
                      .+..|+|.|..||||....+.|.+.++-..+.+-.+-   .++ .....++..-+..=..|+..  ....-..++..++.
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE-~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~rv~  133 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEE-LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVVRVH  133 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHH-HcCchHHHHHHhCCCCCeEEEEcCccccchhhhhhc
Confidence            5789999999999999999999998865444431110   000 00011111111111222210  11111222222222


Q ss_pred             cCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------------HHHHHHHHH
Q 024390          152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAYA  211 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------------~~~rl~~y~  211 (268)
                      .. + ..     ..+.+...+...|++.    +..-+-+||+++.++-.+|+.++                ..++.+.|.
T Consensus       134 g~-~-~~-----~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~y~  206 (264)
T TIGR03709       134 GL-I-PK-----AIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDDYM  206 (264)
T ss_pred             CC-C-CH-----HHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHH
Confidence            11 0 00     0011112234445543    23346899999999999999432                233445555


Q ss_pred             HHchHHHHHHHh-CCcEEEEeCCCC---HHHHHHHHHHHHHhhccc
Q 024390          212 ELSKPLEDYYQK-QKKLLEFQVGSA---PVETWQGLLTALHLQHIN  253 (268)
Q Consensus       212 ~~~~~l~~~y~~-~~~l~~Ida~~s---~eev~~~I~~~L~~~~~~  253 (268)
                      +....++..=+. ..-+++|+++..   --.|.+-|.+.|......
T Consensus       207 ~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~~~~  252 (264)
T TIGR03709       207 EAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESLDLK  252 (264)
T ss_pred             HHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence            544444332111 346899998754   334667777777765443

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=95.97  E-value=0.0074  Score=61.33  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +...++|.||||+||||+++.+++..+..++.+
T Consensus        51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l   83 (725)
T PRK13341         51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSL   83 (725)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence            334689999999999999999999887665444

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=95.96  E-value=0.0064  Score=48.96  Aligned_cols=22  Identities=9%  Similarity=0.013  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +|+++|.+|+||||+..+|...
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999999764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.95  E-value=0.0067  Score=53.02  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .++-.+.|+||+||||||+-..|+-
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            5778899999999999999998874

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.95  E-value=0.0083  Score=56.33  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++..++|+||+|+||||++..|+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            466789999999999999999999764

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.94  E-value=0.005  Score=53.11  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+|.|+|||||||..+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5899999999999999999884

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.93  E-value=0.0073  Score=47.32  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|+|+|.+||||||+...|....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999887643

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04136 Rap_like Rap-like subfamily

Probab=95.93  E-value=0.0075  Score=48.54  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.||+||||+..++..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998875

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00876 Ras Ras family

Probab=95.93  E-value=0.0057  Score=48.83  Aligned_cols=21  Identities=14%  Similarity=0.139  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      +|+|+|++||||||+...+..
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.018  Score=51.22  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCC
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPR  120 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~  120 (268)
                      |..|.+|  +++.||||+|||.+++.+|.+-...  .+.-.+++.+.+..+
T Consensus       185 gidpprg--vllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg  233 (408)
T KOG0727|consen  185 GIDPPRG--VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG  233 (408)
T ss_pred             CCCCCcc--eEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence            4455565  8999999999999999999987544  344456666655433

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.92  E-value=0.0076  Score=61.54  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI  112 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dl  112 (268)
                      .++|.||||+|||++|+.||+.++.+.  +++.+.
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~  524 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence            589999999999999999999997654  444443

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.92  E-value=0.0071  Score=50.89  Aligned_cols=27  Identities=33%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            466789999999999999999998543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>smart00175 RAB Rab subfamily of small GTPases

Probab=95.92  E-value=0.0066  Score=48.81  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +|+++|+|||||||+.+++...
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999998743

Rab GTPases are implicated in vesicle trafficking.

>PRK10646 ADP-binding protein; Provisional

Probab=95.90  E-value=0.01  Score=48.82  Aligned_cols=44  Identities=11%  Similarity=0.023  Sum_probs=33.2

Q ss_pred             CCcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        52 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +++-.++++.+....+         .+..|++.|.-|+||||+++.|++.+|+
T Consensus        11 ~~~t~~l~~~la~~l~---------~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         11 EQATLDLGARVAKACD---------GATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHHHHHHHHHHHhCC---------CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4455566665532221         3457999999999999999999999986

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.90  E-value=0.0085  Score=51.07  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|-+.||||||||++...+.+.+
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L   37 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRAL   37 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHH
Confidence            689999999999999988766655

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=95.90  E-value=0.007  Score=50.31  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHHHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|.|+||+|||+++..++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~   22 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999988664

A related protein is found in archaea.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.89  E-value=0.0075  Score=50.60  Aligned_cols=27  Identities=22%  Similarity=0.382  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|-+|.|+||+||||||+-+.+|...
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            567789999999999999999999743

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.88  E-value=0.0074  Score=51.58  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.88  E-value=0.0072  Score=58.99  Aligned_cols=28  Identities=14%  Similarity=0.195  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ..++|.||||+||||+|+.+|+.+++.+
T Consensus        44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         44 GGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            4699999999999999999999998754

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.027  Score=55.77  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQD  116 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~  116 (268)
                      ++=+++.||||+|||.+|+.+|-.-+++++++  .+.+.-.
T Consensus       183 PkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf  223 (596)
T COG0465         183 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF  223 (596)
T ss_pred             ccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence            34489999999999999999999999886554  4555443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.86  E-value=0.0076  Score=51.73  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            367789999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.86  E-value=0.0076  Score=51.72  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367789999999999999999999654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.84  E-value=0.0073  Score=51.63  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+ ++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            46 89999999999999999998543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=95.83  E-value=0.0092  Score=51.11  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+.|.|.|++||||||+.+.+.+.++
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.82  E-value=0.0083  Score=51.31  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999999654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd00157 Rho Rho (Ras homology) family

Probab=95.82  E-value=0.008  Score=48.78  Aligned_cols=23  Identities=9%  Similarity=0.059  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+.++|...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999998764

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=95.81  E-value=0.012  Score=50.88  Aligned_cols=38  Identities=24%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~  110 (268)
                      ++.| ++..+.|.|+||+|||++|..++...     ++.++++.
T Consensus        18 GGi~-~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         18 GGFE-RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            4444 78899999999999999999998643     34566654

>cd04113 Rab4 Rab4 subfamily

Probab=95.81  E-value=0.0075  Score=48.66  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|++|+||||+.+.|..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=95.80  E-value=0.0081  Score=48.22  Aligned_cols=21  Identities=10%  Similarity=0.048  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      +|+++|+||+||||+.+++..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999874

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PF13479 AAA_24: AAA domain

Probab=95.80  E-value=0.0067  Score=52.37  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++.+++|.|+||+||||+|..+   =+..+|++
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~   31 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDT   31 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence            5678999999999999999988   23335555

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.78  E-value=0.009  Score=53.07  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .+|-++.|+|++|+||||+++.+++....
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            46788999999999999999999987654

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.78  E-value=0.0087  Score=52.83  Aligned_cols=26  Identities=19%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+||+||||||+-+.+|--
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46778999999999999999999853

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.78  E-value=0.0094  Score=53.03  Aligned_cols=27  Identities=11%  Similarity=0.036  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..|+|.|++||||||+.+.|.+...
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             cceEEEEECCCccccchHHHHHhhhcc
Confidence            467899999999999999999988763

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=95.78  E-value=0.0083  Score=49.34  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .|.|+|++||||||++..|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd00154 Rab Rab family

Probab=95.78  E-value=0.0079  Score=47.50  Aligned_cols=21  Identities=14%  Similarity=0.131  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      +|+++|+|||||||+...|..
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999998864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.77  E-value=0.0089  Score=51.02  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            367789999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.77  E-value=0.0086  Score=51.23  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            466789999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=95.77  E-value=0.091  Score=52.34  Aligned_cols=36  Identities=11%  Similarity=0.068  Sum_probs=29.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh-------CCCccchhHHHHhh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQD  116 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l-------~~~~is~~dlir~~  116 (268)
                      ++|.|++|+|||.+++.++...       .+.+++..+++.+.
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            8999999999999999999864       34678887776553

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.77  E-value=0.0094  Score=49.63  Aligned_cols=25  Identities=12%  Similarity=0.238  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|++||||||+.+.|..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~   36 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN   36 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh
Confidence            4678899999999999999999975

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.77  E-value=0.0089  Score=51.40  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.77  E-value=0.0072  Score=56.19  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      ..+-+++|.||+||||||+-+.||   |+...+.|
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IA---Gfe~p~~G   60 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIA---GFEQPSSG   60 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCc
Confidence            466789999999999999999998   44444444

>cd04177 RSR1 RSR1 subgroup

Probab=95.76  E-value=0.0091  Score=48.79  Aligned_cols=23  Identities=9%  Similarity=0.076  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.||+||||+.+++.+.
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998753

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.76  E-value=0.01  Score=53.95  Aligned_cols=28  Identities=18%  Similarity=0.059  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ..+++.|+||+|||++++.+++.++..+
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            3566689999999999999999876543

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.76  E-value=0.0081  Score=52.20  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            467789999999999999999998654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd01862 Rab7 Rab7 subfamily

Probab=95.74  E-value=0.0082  Score=48.75  Aligned_cols=22  Identities=9%  Similarity=0.083  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +|+++|++||||||+.+++...
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999988653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.74  E-value=0.0093  Score=50.92  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999999653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=95.74  E-value=0.023  Score=55.44  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=24.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      +++.||-|+||||.|+.+|+.+|+..
T Consensus        41 YlfsG~RGvGKTt~Ari~AkalNC~~   66 (515)
T COG2812          41 YLFSGPRGVGKTTIARILAKALNCEN   66 (515)
T ss_pred             hhhcCCCCcCchhHHHHHHHHhcCCC
Confidence            79999999999999999999999876

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.73  E-value=0.0091  Score=50.78  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+|.||||+|||++...+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            58999999999997666665544

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.73  E-value=0.012  Score=57.32  Aligned_cols=28  Identities=18%  Similarity=0.183  Sum_probs=23.8

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++.| ++-.++|.|+||+|||++|..++.
T Consensus        26 GG~p-~Gs~~li~G~pGsGKT~l~~qf~~   53 (509)
T PRK09302         26 GGLP-KGRPTLVSGTAGTGKTLFALQFLV   53 (509)
T ss_pred             CCCC-CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4566 688899999999999999998754

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.73  E-value=0.0092  Score=50.68  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.73  E-value=0.0092  Score=51.93  Aligned_cols=27  Identities=33%  Similarity=0.479  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.72  E-value=0.032  Score=48.35  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=74.8

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc--c------
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--S------  138 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i--p------  138 (268)
                      |+.| .|-.++|.|.-|+|||.++++++--+     ...++++..-+++.+..-..++-.+.+.+..|.+.  |      
T Consensus        23 GGiP-~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~  101 (235)
T COG2874          23 GGIP-VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV  101 (235)
T ss_pred             CCCc-cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence            5577 78899999999999999999997543     34567776666655543233333344555555431  1      


Q ss_pred             ---HHHHHHHHHHHHHcCCccCccEEEEcCCcC----C-HHHH-HHHH---hhcCCCeEEEEecCHHHHHhhh
Q 024390          139 ---EDIIFGLLSKRLEDGYYRGEIGFILDGLPR----S-RIQA-EILD---QLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       139 ---~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr----~-~~qa-~~l~---~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                         ......+|..-++.......+-+|+|.+--    . ..++ +.|.   .+..-..+|.|++.+..+-+-.
T Consensus       102 ~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~  174 (235)
T COG2874         102 NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDV  174 (235)
T ss_pred             ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHH
Confidence               223334444333332223466778887531    1 1122 2222   3345667999999988765543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.72  E-value=0.0095  Score=50.89  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998643

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.72  E-value=0.0095  Score=51.21  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.72  E-value=0.0097  Score=60.69  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=29.5

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHH
Q 024390           76 RRGV-HWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIV  113 (268)
Q Consensus        76 ~~~~-~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dli  113 (268)
                      .++. .++|.||+|+|||++|+.||+.++..  .+++++..
T Consensus       481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~  521 (731)
T TIGR02639       481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM  521 (731)
T ss_pred             CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence            3443 48999999999999999999999764  45555543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.71  E-value=0.0096  Score=51.22  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367789999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.71  E-value=0.011  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..+|-|.|+||+||||+...|...|
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            45789999999999999999998876

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.71  E-value=0.013  Score=50.83  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=23.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++.| ++-.++|.|+||+|||+++..++.
T Consensus        15 GGi~-~G~~~~i~G~~G~GKT~l~~~~~~   42 (229)
T TIGR03881        15 GGIP-RGFFVAVTGEPGTGKTIFCLHFAY   42 (229)
T ss_pred             CCCc-CCeEEEEECCCCCChHHHHHHHHH
Confidence            4555 788899999999999999988764

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.71  E-value=0.01  Score=49.56  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367789999999999999999998543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.71  E-value=0.0098  Score=50.92  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00879 Sar1 Sar1 subfamily

Probab=95.70  E-value=0.01  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|++||||||+.+.|..
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456789999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.70  E-value=0.01  Score=50.28  Aligned_cols=26  Identities=12%  Similarity=0.127  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            56689999999999999999998754

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.69  E-value=0.0083  Score=58.57  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      -.++|.||||+||||+|+.+++.+++
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            34799999999999999999999864

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.69  E-value=0.0096  Score=51.86  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467789999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=95.69  E-value=0.011  Score=48.18  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|+||+||||+..++..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~   25 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSE   25 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999999875

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.69  E-value=0.011  Score=43.01  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +++.|.+|+||||++..|+..+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l   23 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAAL   23 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999876

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.68  E-value=0.011  Score=52.25  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+.+++|+|++||||||++..|-..+
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            44689999999999999998886654

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.68  E-value=0.0097  Score=55.74  Aligned_cols=27  Identities=22%  Similarity=0.238  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++..|.|+|.+||||||++..|.+.+.
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            788999999999999999999998876

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.68  E-value=0.012  Score=48.24  Aligned_cols=33  Identities=18%  Similarity=0.064  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .+.-++|.|++|+||||++..|.++ |+..++-|
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            4566999999999999999988875 66666443

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=95.68  E-value=0.011  Score=52.64  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD  116 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~  116 (268)
                      ++..++|.|+||+|||.++..|+..+   |  +.++++.+++.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            45679999999999999999998865   3  2467777877664

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.67  E-value=0.0098  Score=50.63  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            366789999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.67  E-value=0.0095  Score=56.37  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      -++|.||||+||||+|+.+|+.+++.
T Consensus        40 a~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         40 GYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            38999999999999999999999774

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.66  E-value=0.01  Score=51.53  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.66  E-value=0.01  Score=51.25  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            367789999999999999999999765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.65  E-value=0.01  Score=52.24  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|-.+-|+|++||||||+++.|+-.
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence            46778999999999999999999854

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.65  E-value=0.0083  Score=55.75  Aligned_cols=28  Identities=11%  Similarity=0.122  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+..|+|.|++||||||+.+.|.....
T Consensus       160 ~~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        160 VGRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence            3567899999999999999999998764

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.65  E-value=0.0096  Score=58.58  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .++|.||||+||||+|+.||+.+++
T Consensus        40 a~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         40 AYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999875

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.64  E-value=0.0089  Score=61.58  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|.||||+||||+|+.|++.+++.
T Consensus        40 AyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         40 AYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhccCc
Confidence            46999999999999999999999874

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.64  E-value=0.01  Score=51.79  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467789999999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.64  E-value=0.0098  Score=52.37  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.++|+|++||||||+.+.|+--+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl   54 (235)
T COG1122          28 EKGERVLLIGPNGSGKSTLLKLLNGLL   54 (235)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence            467789999999999999999997543

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=95.64  E-value=0.011  Score=48.36  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      -.+|+++|++|+||||+..++..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            36799999999999999999864

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.63  E-value=0.01  Score=59.40  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      --++|.||+|+||||+|+.||+.+++.
T Consensus        38 HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         38 HAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            458999999999999999999999874

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=95.63  E-value=0.011  Score=49.41  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+..++..
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~   39 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKN   39 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhc
Confidence            4557899999999999999999875

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.63  E-value=0.011  Score=51.75  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.62  E-value=0.01  Score=57.69  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      -++|.||+|+||||+|+.+|+.+++.
T Consensus        37 a~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         37 SILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             eEEEECCCCccHHHHHHHHHHHHcCc
Confidence            59999999999999999999988764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.62  E-value=0.011  Score=49.21  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|.|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            366789999999999999999998653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=95.61  E-value=0.013  Score=54.36  Aligned_cols=27  Identities=30%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +..++++.||+|+||||+++.|.+.+.
T Consensus        87 ~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   87 RKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            677899999999999999999998763

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.61  E-value=0.0099  Score=50.88  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            366789999999999999999998653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=95.61  E-value=0.012  Score=48.70  Aligned_cols=31  Identities=13%  Similarity=0.127  Sum_probs=27.4

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      |-..+.|.|+|+--|||||++++||..+|-+
T Consensus         5 p~F~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           5 PFFVKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             hhhheeeeeecCcccChHHHHHHHHHHhCCC
Confidence            3456789999999999999999999999874

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.61  E-value=0.01  Score=51.03  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            466789999999999999999998653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.61  E-value=0.011  Score=57.59  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +..+.+|+||+||||||..+.|++.+|+.++
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            4457899999999999999999999998653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.60  E-value=0.011  Score=49.99  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+|+.||||||+.+.|+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46678999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.60  E-value=0.012  Score=48.94  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            466789999999999999999998654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.60  E-value=0.011  Score=51.06  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.60  E-value=0.012  Score=48.88  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|.|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467789999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.60  E-value=0.011  Score=51.27  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999999654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.60  E-value=0.011  Score=51.40  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=95.60  E-value=0.011  Score=48.68  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.||+||||+.+.+..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998875

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.59  E-value=0.011  Score=51.85  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.59  E-value=0.011  Score=50.78  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.58  E-value=0.012  Score=51.10  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467789999999999999999998643

>cd01870 RhoA_like RhoA-like subfamily

Probab=95.57  E-value=0.011  Score=48.35  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|++||||||+..++...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999998863

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.57  E-value=0.011  Score=52.05  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999999764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.57  E-value=0.012  Score=49.38  Aligned_cols=27  Identities=26%  Similarity=0.144  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.57  E-value=0.011  Score=51.70  Aligned_cols=27  Identities=19%  Similarity=0.492  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999999754

>cd01895 EngA2 EngA2 subfamily

Probab=95.57  E-value=0.011  Score=47.62  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+++|.+|+||||+...|...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc
Confidence            467999999999999999999764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.56  E-value=0.012  Score=48.59  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|.|+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=95.56  E-value=0.016  Score=47.40  Aligned_cols=28  Identities=25%  Similarity=0.143  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .+..|++.|.-||||||++|.+++.+|.
T Consensus        24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            5668999999999999999999999985

>cd01860 Rab5_related Rab5-related subfamily

Probab=95.56  E-value=0.012  Score=47.45  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+++|++||||||+.++|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>COG4240 Predicted kinase [General function prediction only]

Probab=95.56  E-value=0.014  Score=51.17  Aligned_cols=40  Identities=15%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh------CCCccchhHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL------EVPRISMSSIVRQ  115 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l------~~~~is~~dlir~  115 (268)
                      .++.++.|+||-||||||++..|-..+      ....+|+||+...
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt   93 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT   93 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence            478899999999999999998765543      2456788887643

>PTZ00202 tuzin; Provisional

Probab=95.55  E-value=0.054  Score=52.05  Aligned_cols=27  Identities=15%  Similarity=0.083  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .+++|.|++|+||||+++.+....+.+
T Consensus       287 rivvLtG~~G~GKTTLlR~~~~~l~~~  313 (550)
T PTZ00202        287 RIVVFTGFRGCGKSSLCRSAVRKEGMP  313 (550)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcCCce
Confidence            489999999999999999999887743

>cd01864 Rab19 Rab19 subfamily

Probab=95.55  E-value=0.012  Score=47.70  Aligned_cols=23  Identities=13%  Similarity=0.156  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|++|+||||+..++..
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Confidence            46799999999999999998853

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.55  E-value=0.012  Score=51.32  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        25 RPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467789999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.55  E-value=0.012  Score=51.02  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999999754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=95.54  E-value=0.025  Score=51.70  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=32.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHHHhhc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDL  117 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dlir~~~  117 (268)
                      -++.+.|.||||.|||-+|+.++...|+..  ++.+.++.+.+
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi  207 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI  207 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence            356689999999999999999999997754  45566665554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.54  E-value=0.014  Score=52.91  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .....|-|+|+|||||||+...+.+.+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999888775

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.54  E-value=0.012  Score=51.41  Aligned_cols=26  Identities=15%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+|+.||||||+.+.|+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46778999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.54  E-value=0.012  Score=50.98  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=95.54  E-value=0.014  Score=53.25  Aligned_cols=29  Identities=14%  Similarity=0.009  Sum_probs=25.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |+.| .+..+.|.|+||||||++|-.++-.
T Consensus        90 GGi~-~g~i~ei~G~~g~GKT~l~~~~~~~  118 (310)
T TIGR02236        90 GGIE-TQAITEVFGEFGSGKTQICHQLAVN  118 (310)
T ss_pred             CCCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4455 6888999999999999999999865

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.54  E-value=0.012  Score=49.90  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-++.|.|+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998644

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.53  E-value=0.012  Score=54.20  Aligned_cols=26  Identities=12%  Similarity=0.123  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..|+|.|++||||||+.+.|...+
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            45679999999999999999998764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.52  E-value=0.012  Score=52.14  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..|-++.|+|+.||||||+.+.|+..+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999999764

>cd04123 Rab21 Rab21 subfamily

Probab=95.52  E-value=0.012  Score=46.99  Aligned_cols=22  Identities=14%  Similarity=0.101  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +|+|+|++|+||||+..++...
T Consensus         2 ki~i~G~~~~GKStli~~l~~~   23 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVEN   23 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999988753

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.52  E-value=0.012  Score=49.52  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            366789999999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.51  E-value=0.013  Score=48.94  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.02  Score=51.35  Aligned_cols=63  Identities=19%  Similarity=0.310  Sum_probs=41.8

Q ss_pred             CcchHhhhccccccCCCCC-----CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhcC
Q 024390           53 SDSDQHRDSLRSVTLPDTE-----GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLS  118 (268)
Q Consensus        53 ~~~~~l~~~~~~~~~~~~~-----~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~~  118 (268)
                      ++.+.|++. -..|.++++     |..|.++  |++.||||+|||-.|+.+|.+-+..+|-+  .+++.+...
T Consensus       184 eqieklrev-ve~pll~perfv~lgidppkg--vllygppgtgktl~aravanrtdacfirvigselvqkyvg  253 (435)
T KOG0729|consen  184 EQIEKLREV-VELPLLHPERFVNLGIDPPKG--VLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG  253 (435)
T ss_pred             HHHHHHHHH-HhccccCHHHHhhcCCCCCCc--eEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhh
Confidence            344555553 223444544     3344444  89999999999999999999998776654  466655543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.51  E-value=0.013  Score=49.98  Aligned_cols=27  Identities=22%  Similarity=0.484  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            467789999999999999999998643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.51  E-value=0.017  Score=54.41  Aligned_cols=27  Identities=19%  Similarity=0.058  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+++|+||.|+||||.+..||..+
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999999765

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.51  E-value=0.013  Score=49.89  Aligned_cols=27  Identities=22%  Similarity=0.187  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|.|+.||||||+.+.|+-.+
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            467789999999999999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.50  E-value=0.012  Score=51.12  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-++.|+|+.||||||+.+.|+-.+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999999754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.50  E-value=0.012  Score=52.55  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+.+++|+||.||||||+-+.|+..+.
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3678899999999999999999998653

>cd04159 Arl10_like Arl10-like subfamily

Probab=95.50  E-value=0.01  Score=46.89  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~  101 (268)
                      |+|+|++|+||||+.+.|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999753

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=95.50  E-value=0.011  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +|+|+|++|+||||+...|...+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~   23 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLF   23 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhc
Confidence            48999999999999999997654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.49  E-value=0.012  Score=51.08  Aligned_cols=27  Identities=26%  Similarity=0.446  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.49  E-value=0.012  Score=51.72  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            466789999999999999999999653

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.48  E-value=0.013  Score=53.47  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..|+|.|++||||||+.+.|.+.+
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998876

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.48  E-value=0.013  Score=51.24  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=95.47  E-value=0.096  Score=49.61  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      +--++|.||||+|||++|+.+|+.+.+.
T Consensus        36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         36 THAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            3459999999999999999999998764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.47  E-value=0.013  Score=50.50  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            356789999999999999999998643

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.47  E-value=0.012  Score=47.91  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |.++|++||||||++..++..+
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~   23 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7889999999999999999876

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.47  E-value=0.013  Score=51.95  Aligned_cols=27  Identities=11%  Similarity=0.287  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999999654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.47  E-value=0.014  Score=50.57  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+-++.|+|+.||||||+.+.|+..+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            4677899999999999999999986543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.47  E-value=0.013  Score=51.48  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            366789999999999999999999764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.46  E-value=0.013  Score=50.81  Aligned_cols=27  Identities=15%  Similarity=0.358  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            367789999999999999999998664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.46  E-value=0.013  Score=51.83  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            356789999999999999999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		3e-12
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		2e-11
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		4e-10
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		7e-10
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		8e-10
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		1e-09
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		1e-09
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		4e-09
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		2e-08
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		2e-08
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		2e-08
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		3e-08
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		4e-08
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		5e-08
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-07
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		2e-07
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		3e-07
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		9e-07
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		1e-06
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-06
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-06
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		2e-06
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-06
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-06
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-06
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-06
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-06
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		2e-06
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		5e-06
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		7e-06
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		1e-05
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		1e-05
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		1e-05
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		1e-05
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		2e-05
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		3e-05
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		1e-04
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		2e-04

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
           E  +GV    +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ 
Sbjct: 12  ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNF 188
           G++VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L E     +D V+ F
Sbjct: 72  GKLVSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF 129
Query: 189 KCADNFIVTNRGGSL 203
              D+ ++    G L
Sbjct: 130 SIPDSLLIRRITGRL 144

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
           E  +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K++   ++ 
Sbjct: 12  EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNF 188
           G++VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L E     +D V+ F
Sbjct: 72  GKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF 129
Query: 189 KCADNFIVTNRGGSL 203
              D+ ++    G L
Sbjct: 130 SIPDSLLIRRITGRL 144

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 44/196 (22%)
Query: 81  WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
             F+G P A K   A+ L+K      IS   I+R+ +   + L K+    + RGE+V +D
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCADNFI 195
           +I  L+ +      +      I DG PR+  QAE LD++ E     +D V+ F+  D  +
Sbjct: 63  LIIALIEE-----VFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV 117
Query: 196 VTNRGGS---------------------------------LKEKLEAYAELSKPLEDYYQ 222
           +    G                                  +K++LE Y E + PL +YY 
Sbjct: 118 IERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYY- 176
Query: 223 KQKKLLEFQVGSAPVE 238
           K+K +L     S PVE
Sbjct: 177 KKKGILRIIDASKPVE 192

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIV 196
             L+ +R+     R   GF+LDG PR+  QA+ + +    +D V+ F   D  IV
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIV 117

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIV 196
             L+ +R+     R   GF+LDG PR+  QA+ + +    +D V+ F   D  IV
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIV 117

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIV 196
             L+ +R+     R   GF+LDG PR+  QA+ + +    +D V+ F   D  IV
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIV 117

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 77  RGVHW--AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
           RG H     +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G
Sbjct: 17  RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAG 76
Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFK 189
           ++V  D+   L+  RL +       GFILDG PRS  QA+ L ++ E     ID V+ F+
Sbjct: 77  DLVPSDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFR 134
Query: 190 CADNFIVTNRGGS---------LKEKLEAYAELSKPLEDYYQKQKKLLE 229
            ++  ++    G          +  +++ Y + + PL +YY+ Q K ++
Sbjct: 135 VSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVD 183

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G++V  D+ 
Sbjct: 5   LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCADNFIVT 197
             L+  RL +       GFILDG PRS  QA+ L ++ E     ID V+ F+ ++  ++ 
Sbjct: 65  NELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122
Query: 198 NRGGS---------LKEKLEAYAELSKPLEDYYQKQKKLLE 229
              G          +  +++ Y + + PL +YY+ Q K ++
Sbjct: 123 RLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVD 163

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 46/214 (21%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           +    IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADN 193
           +DI+  ++   L +     + GFILDG PR+  QAE LDQ+       ++  +  K  D 
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 194 FIVTNRGG----------------------------------------SLKEKLEAYAEL 213
            +V    G                                        +LK++L AY   
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQ 183
Query: 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
           ++P+ D+Y+K            P   W  +L  L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 46/214 (21%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           +    IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADN 193
           +DI+  ++   L +     + GFILDG PR+  QAE LDQ+       ++  +  K  D 
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 194 FIVTNRGG----------------------------------------SLKEKLEAYAEL 213
            +V    G                                        +LK++L AY   
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQ 183
Query: 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
           ++P+ D+Y+K            P   W   L  L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADFLNKL 217

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+  A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIV 196
             L+ +R+     R   GF+LDG PR+  QA+ + +    +D V+ F   D  IV
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIV 117

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P + K    E L +      +S   ++R++L+  S   K I + + RG++V   I+
Sbjct: 17  IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 143 FGLLSKRLED--GYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNR 199
             LL + +    G  RG   F++DG PR   Q E   + + +  LV+   C+ +  +TNR
Sbjct: 77  LELLKEAMVASLGDTRG---FLIDGYPREVKQGEEFGRRIGDPQLVICMDCSAD-TMTNR 132
Query: 200 --------------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLT 245
                           ++ ++LEAY   S P+  YY+ + +L +      P + +  L T
Sbjct: 133 LLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCT 192
Query: 246 AL 247
           A+
Sbjct: 193 AI 194

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 81  WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
           + F+G+P + K   +  L K      +S   ++R+    ++ L  +I N +N G++V + 
Sbjct: 32  YIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQ 91
Query: 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFI 195
           ++  L+ ++L+    +   GFILDG PR+  QAE L++L      ++D V  F   D  +
Sbjct: 92  MVLSLVDEKLKTPQCKK--GFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVL 149
Query: 196 VTNRGGSLKEK 206
           V    G L  K
Sbjct: 150 VNRISGRLIHK 160

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   AE + +  E+P IS   + R  +   + L  +  + +++G +V 
Sbjct: 1   MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 139 EDIIFGLLSKRL-EDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFK 189
           +++  G++ +RL +D   +   GF+LDG PR+  QA+ LD L      ++D V+N K
Sbjct: 61  DEVTIGIVHERLSKDDCQK---GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIK 114

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   AE +     +P IS   + R  +   + L  Q    ++RG++V 
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD-QLAEI 182
           +++  G++ +RL     +   GF+LDG PR+  QAE L+  LA+I
Sbjct: 61  DEVTIGIVRERLSKDDCQN--GFLLDGFPRTVAQAEALETMLADI 103

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 84  IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ-IANAVNRGEVVSEDII 142
           +G P A K    E L K      +S   ++R +     S + + I N +  G++V ++I 
Sbjct: 21  LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVT---N 198
             LL   + D     +  F++DG PR   QA   ++ + E   ++ F C ++ ++     
Sbjct: 81  LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLE 140
Query: 199 RGG----------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248
           RG           S+K++   + E S P+ +Y++ + K++  +   +  + ++ +  A+ 
Sbjct: 141 RGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 46/214 (21%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           +    IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADN 193
           +DI+  ++   L +     + GFIL G PR+  QAE LDQ+       ++  +  K  D 
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 194 FIVTNRGG----------------------------------------SLKEKLEAYAEL 213
            +V    G                                        +LK++L AY   
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQ 183
Query: 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
           ++P+ D+Y+K            P   W  +L  L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 45/200 (22%)
Query: 78  GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137
           G    F+G P A K   A  L++ L   ++S   I+R  ++  + L +++   + RG++V
Sbjct: 4   GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL------------------ 179
            +D+I  L+ + L +         I DG PR+  QAE LD+L                  
Sbjct: 64  PDDLILELIREELAE-------RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPE 116
Query: 180 ----------AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLE 229
                     AE++     +  DN     R      +LE Y E ++PL  YY+ +  L  
Sbjct: 117 EELVRRILRRAELE----GRSDDNEETVRR------RLEVYREKTEPLVGYYEARGVLKR 166
Query: 230 FQVGSAPVETWQGLLTALHL 249
                 P E +  +  AL +
Sbjct: 167 VDGLGTPDEVYARIRAALGI 186

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   A+ + +    P IS   + R  +   + L  +  + +++G +V 
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL 179
           +++  G++ +RL       + GF+LDG PR+  QAE LDQL
Sbjct: 61  DEVTIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALDQL 99

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 82  AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141
           A +G+P + K   +  ++K  E+  +S   ++R ++   + +       +++G+++ +D+
Sbjct: 10  AIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDV 69
Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC 190
           +  L+   L++     +  ++LDG PR+  QAE LD+  +ID V+N   
Sbjct: 70  MTRLVLHELKN---LTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNV 115

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   AE + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL       E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVRERLSKSDC--ERGFLLDGFPRTVAQ 92

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG+P + K    E + K   +  +S   ++R+ +   + +  +  + +  G  V ++I+
Sbjct: 10  LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAE----ILDQLAE-IDLVVNFKCADNFIV 196
            GL+ ++ + G      GF+LDG PR+  QAE    IL ++ + +  V+ F+  D+ I+
Sbjct: 70  LGLVKEKFDLGVCVN--GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G   + K     ++     +  I    I R+ +   + L K+    ++RG++V +DI 
Sbjct: 5   IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAE-ILDQLAEIDLVVNF 188
             ++ + LE    +G+ G++LDG PR+ +QA+ + + L E  + +NF
Sbjct: 65  IPMVLETLES---KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINF 108

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G   + K     ++     +  I    I R+ +   + L K+    ++RG++V +DI 
Sbjct: 5   IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAE-ILDQLAEIDLVVNF 188
             ++ + LE    +G+ G++LDG PR+ +QA+ + + L E  + +NF
Sbjct: 65  IPMVLETLES---KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINF 108

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 82  AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141
             +G P + K    + +++   +  +S    +R+++   + + +     + +  +V + +
Sbjct: 31  VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK 189
           I  L+   LE+   RG+  ++LDG PR+  QAE LD++ E+DLV++  
Sbjct: 91  ITRLMMSELEN--RRGQ-HWLLDGFPRTLGQAEALDKICEVDLVISLN 135

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 82  AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141
             +G P + K    + +++   +  +S    +R+++   + + +     + +  +V + +
Sbjct: 9   VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNF 188
           I  L+   LE+   RG+  ++LDG PR+  QAE LD++ E+DLV++ 
Sbjct: 69  ITRLMMSELEN--RRGQ-HWLLDGFPRTLGQAEALDKICEVDLVISL 112

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A  + +   +P+IS    +R  +   + L  +     + G++V + +I
Sbjct: 13  LLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLI 72
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAE-------ILDQLAEIDL 184
            GL+ +RL++       G++ DG PR+  QA+        +D + EID+
Sbjct: 73  IGLVKERLKEADCAN--GYLFDGFPRTIAQADAXKEAGVAIDYVLEIDV 119

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 85/199 (42%), Gaps = 44/199 (22%)
Query: 82  AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141
             +G+P + K   +  ++   E+  +S   ++R ++   + +       +++G+++ +D+
Sbjct: 11  VIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDV 70
Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVT---- 197
           +  L    L++     +  ++LDG PR+  QAE LD+  +ID V+N       I      
Sbjct: 71  MTRLALHELKN---LTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTA 127
Query: 198 ------------------------------------NRGGSLKEKLEAYAELSKPLEDYY 221
                                               ++  ++ ++L+AY + +KP+ +YY
Sbjct: 128 RWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYY 187
Query: 222 QKQKKLLEFQVGSAPVETW 240
           QK K +LE   G+   + W
Sbjct: 188 QK-KGVLETFSGTETNKIW 205

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G+P + K    E++    ++  IS   ++R +++  S   K+    + +G++V ++I+  
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEI--DLVVNFKCADNFIV 196
           ++ +RL     + E G++LDG PRS  QA  L+ L EI  D  +     D  +V
Sbjct: 72  MVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLV 123

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 84  IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
           +G P + K    E L +      +S   ++R ++   S   K++   + RGE+V  +++ 
Sbjct: 35  LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 144 GLLSK---RLEDGYYRGEIGFILDGLPRSRIQA-EILDQLAEIDLVVNFKCADNFI---- 195
            LL +   +L D        F++DG PR   Q  +   ++     V+NF  ++  +    
Sbjct: 95  ALLKEAMIKLVDKNCH----FLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRL 150
Query: 196 ---------VTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLL 228
                    V +   ++ ++   + EL+KP+ ++Y++Q K++
Sbjct: 151 LKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVI 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	1e-25
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	3e-24
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	6e-24
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	8e-24
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	7e-23
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	8e-23
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	2e-22
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	2e-22
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	4e-22
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	5e-22
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	7e-22
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	9e-22
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	1e-21
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	2e-21
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	3e-21
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	4e-21
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	4e-21
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	7e-21
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	3e-19
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  100 bits (251), Expect = 1e-25
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 44/205 (21%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P + K   +  ++   E+  +S   ++R ++   + +       +++G+++ +D++
Sbjct: 12  IMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVM 71

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV---TNR 199
             L    L++     +  ++LDG PR+  QAE LD+  +ID V+N       I    T R
Sbjct: 72  TRLALHELKN---LTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR 128

Query: 200 --------------------------GGSL-----------KEKLEAYAELSKPLEDYYQ 222
                                     G  L            ++L+AY + +KP+ +YYQ
Sbjct: 129 WIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQ 188

Query: 223 KQKKLLEFQVGSAPVETWQGLLTAL 247
           K+  L  F  G+   + W  +   L
Sbjct: 189 KKGVLETFS-GTETNKIWPYVYAFL 212

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 44/205 (21%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K    + +++   +  +S    +R+++   + + +     + +  +V + +I
Sbjct: 32  ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 91

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV---TNR 199
             L+   LE+   R    ++LDG PR+  QAE LD++ E+DLV++       +    + R
Sbjct: 92  TRLMMSELEN---RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 148

Query: 200 --------------------------GGSL-----------KEKLEAYAELSKPLEDYYQ 222
                                     G  L             +L  Y +++KP+ + Y+
Sbjct: 149 WIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYK 208

Query: 223 KQKKLLEFQVGSAPVETWQGLLTAL 247
            +  L +F  G+   + W  + T  
Sbjct: 209 SRGVLHQFS-GTETNKIWPYVYTLF 232

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score = 95.0 bits (237), Expect = 6e-24
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDI 141
            +G P A K    E L K      +S   ++R +     S   + I N +  G++V ++I
Sbjct: 20  VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI 79

Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD-QLAEIDLVVNFKCADNFIV---T 197
              LL   + D     +  F++DG PR   QA   +  + E   ++ F C ++ ++    
Sbjct: 80  TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLL 139

Query: 198 NRGG----------SLKEKLEAYAELSKPLEDYYQKQKKLLE 229
            RG           S+K++   + E S P+ +Y++ + K++ 
Sbjct: 140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVR 181

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score = 94.1 bits (235), Expect = 8e-24
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 27/184 (14%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A  L++ L   ++S   I+R  ++  + L +++   + RG++V +D+I
Sbjct: 9   FLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLI 68

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             L+ + L +         I DG PR+  QAE LD+L       +  VV  +  +  +V 
Sbjct: 69  LELIREELAE-------RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVR 121

Query: 197 --TNRGG----------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET-WQGL 243
               R            +++ +LE Y E ++PL  YY+ +  L     G    +  +  +
Sbjct: 122 RILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVD-GLGTPDEVYARI 180

Query: 244 LTAL 247
             AL
Sbjct: 181 RAAL 184

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score = 92.2 bits (230), Expect = 7e-23
 Identities = 40/211 (18%), Positives = 81/211 (38%), Gaps = 49/211 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG+P + K    E + K   +  +S   ++R+ +   + +  +  + +  G  V ++I+
Sbjct: 10  LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
            GL+ ++ + G      GF+LDG PR+  QAE L ++       +  V+ F+  D+ I+ 
Sbjct: 70  LGLVKEKFDLGVCVN--GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIE 127

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             + R                          G  L           K +L+ + + + PL
Sbjct: 128 RISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPL 187

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
             +Y+    L        P +   + +   L
Sbjct: 188 VKFYEDLGILKRVN-AKLPPKEVTEQIKKIL 217

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score = 91.8 bits (229), Expect = 8e-23
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)

Query: 95  AEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154
            E L +      +S   ++R++L+  S   K I + + RG++V   I+  LL + +    
Sbjct: 29  CEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL 88

Query: 155 YRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIV---TNRGG--------- 201
                GF++DG PR   Q E   + + +  LV+   C+ + +                  
Sbjct: 89  GDTR-GFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTT 147

Query: 202 -SLKEKLEAYAELSKPLEDYYQKQKKLLE 229
            ++ ++LEAY   S P+  YY+ + +L +
Sbjct: 148 KTIAKRLEAYYRASIPVIAYYETKTQLHK 176

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 45/204 (22%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A+ L+K      IS   I+R+ +   + L K+    + RGE+V +D+I
Sbjct: 5   FLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLI 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             L+ +             I DG PR+  QAE LD++      ++D V+ F+  D  ++ 
Sbjct: 65  IALIEEVFPK-----HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119

Query: 197 --TNR-------------------GGSL-----------KEKLEAYAELSKPLEDYYQKQ 224
             + R                   G  +           K++LE Y E + PL +YY+K+
Sbjct: 120 RLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKK 179

Query: 225 KKLLEFQVGSAPVET-WQGLLTAL 247
             L      S PVE  ++ +L  +
Sbjct: 180 GILRIID-ASKPVEEVYRQVLEVI 202

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score = 90.3 bits (225), Expect = 2e-22
 Identities = 31/170 (18%), Positives = 75/170 (44%), Gaps = 16/170 (9%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K    E + +      +S   ++R ++S  S+  K+++  + +G++V  + +
Sbjct: 14  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIV---TN 198
             +L   +         GF++DG PR   Q E  ++ + +  L++        +      
Sbjct: 74  LDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLK 132

Query: 199 RGG----------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238
           RG           ++K++LE Y + ++P+  +Y+K+  + +       V+
Sbjct: 133 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVN-AEGSVD 181

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score = 89.5 bits (223), Expect = 4e-22
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K      + +      +S   ++RQ+    S   + IA  +  GE+V   + 
Sbjct: 11  VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIV-- 196
             LL   ++    +    F++DG PR+       ++      +   V+ F C +  +   
Sbjct: 71  VKLLKNAIDANQGK---NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127

Query: 197 -TNRGG----------SLKEKLEAYAELSKPLEDYYQKQKKLLE 229
              RG           S+K++   +   +K + D+Y K  K+  
Sbjct: 128 LLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKI 171

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score = 89.5 bits (223), Expect = 5e-22
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G++V  D+ 
Sbjct: 25  LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 84

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             L+  RL +       GFILDG PRS  QA+ L ++      +ID V+ F+ ++  ++ 
Sbjct: 85  NELVDDRLNNPDAAN--GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 142

Query: 197 --TNRGGS------LKEKLEAYAELSKPLEDYYQKQ 224
               RG +      +  +++ Y + + PL +YY+ Q
Sbjct: 143 RLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQ 178

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score = 89.5 bits (223), Expect = 7e-22
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 49/211 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE + +  E+P IS   + R  +   + L  +  + +++G +V +++ 
Sbjct: 5   LMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
            G++ +RL     +   GF+LDG PR+  QA+ LD L      ++D V+N K     ++ 
Sbjct: 65  IGIVHERLSKDDCQK--GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMK 122

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             T R                          GG L           K +L+   + ++PL
Sbjct: 123 RLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPL 182

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
            D+Y ++  L +   G   ++  +  +   L
Sbjct: 183 LDFYSQKGVLKDID-GQQDIKKVFVDINDLL 212

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score = 90.0 bits (224), Expect = 9e-22
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 49/211 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G+P + K   +  L K      +S   ++R+    ++ L  +I N +N G++V + ++
Sbjct: 34  FLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMV 93

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             L+ ++L+    +   GFILDG PR+  QAE L++L      ++D V  F   D  +V 
Sbjct: 94  LSLVDEKLKTPQCKK--GFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVN 151

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             + R                             L           K++L  +   + PL
Sbjct: 152 RISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPL 211

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
             YY+ +  L+     + P     + +   +
Sbjct: 212 ISYYKNKNLLINLD-ATQPANDLEKKISQHI 241

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score = 89.1 bits (222), Expect = 1e-21
 Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 49/211 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V +++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
            G++ +RL         GF+LDG PR+  QAE L+++       ID V+N +   + ++ 
Sbjct: 65  IGIVKERLGKDDCER--GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLME 122

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             T R                          GG L            ++LE   + + PL
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPL 182

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
            D+Y ++  L+    G   ++  +  L   L
Sbjct: 183 LDFYDEKGYLVNVN-GQQDIQDVYADLKVLL 212

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 48/211 (22%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIV---TN 198
             L+ +R+     R   GF+LDG PR+  QA+ + +    +D V+ F   D  IV     
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVG 122

Query: 199 R--------------------------GGSL-----------KEKLEAYAELSKPLEDYY 221
           R                          G  L           +++L  Y +++ PL  YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182

Query: 222 QKQKKLLEFQV----GSAPVET-WQGLLTAL 247
            K+ +    +     G+ PV      L   L
Sbjct: 183 SKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score = 88.4 bits (220), Expect = 3e-21
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 49/211 (23%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ G++VS++++
Sbjct: 21  LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             L+ K LE    +   GF+LDG PR+  QAE+LD L      ++D V+ F   D+ ++ 
Sbjct: 81  LELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIR 138

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             T R                          G  L           K +LEAY   + PL
Sbjct: 139 RITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPL 198

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
            +YY K+         S   +  +  +L A 
Sbjct: 199 VEYYSKRGIHSAID-ASQTPDVVFASILAAF 228

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score = 87.2 bits (217), Expect = 4e-21
 Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 20/167 (11%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDI 141
            +G P A K      + +      +S   ++R +  +P S   + I   +  G++V  +I
Sbjct: 8   VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 67

Query: 142 IFGLLSKRLEDGYYRGEI--GFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFI 195
              LL + ++           F++DG PR++   +  ++     A++  V+ F C +   
Sbjct: 68  TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 127

Query: 196 V---TNRGG----------SLKEKLEAYAELSKPLEDYYQKQKKLLE 229
           +     RG           SL+++++ Y + +KP+ D Y++  K+ +
Sbjct: 128 IERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKK 174

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score = 87.7 bits (218), Expect = 4e-21
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 43/204 (21%)

Query: 75  RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
               +    +G+P A K   A  + +   +P+IS   ++R  +   + L  +    ++ G
Sbjct: 5   HHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEG 64

Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADN 193
           ++V + +I GL+ +RL++       G++ DG PR+  QA+ + +    ID V+      +
Sbjct: 65  KLVPDSLIIGLVKERLKEADCAN--GYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFS 122

Query: 194 FIV---TNR--------------------------GGSL-----------KEKLEAYAEL 213
            I+   + R                          G  L           K++L+ Y   
Sbjct: 123 EIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQ 182

Query: 214 SKPLEDYYQKQKKLLEFQVGSAPV 237
           +KPL  YY    +        AP 
Sbjct: 183 TKPLITYYGDWARRGAENGLKAPA 206

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score = 86.8 bits (216), Expect = 7e-21
 Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 48/211 (22%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS+DI+
Sbjct: 9   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             ++   L +       GFILDG PR+  QAE LDQ+       ++  +  K  D  +V 
Sbjct: 69  VNMIKDELTNNPACKN-GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVA 127

Query: 197 --TNR--------------------------GGSL-----------KEKLEAYAELSKPL 217
             T R                          G +L           K++L AY   ++P+
Sbjct: 128 RITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPI 187

Query: 218 EDYYQKQKKLLEFQVGSAPVET-WQGLLTAL 247
            D+Y+K          S P  T W  +L  L
Sbjct: 188 VDFYKKTGIWAGVD-ASQPPATVWADILNKL 217

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score = 82.6 bits (205), Expect = 3e-19
 Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 46/205 (22%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G+P + K    E++    ++  IS   ++R +++  S   K+    + +G++V ++I+
Sbjct: 10  ISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIV 69

Query: 143 FGLLSKRLE--DGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIV--- 196
             ++ +RL   D       G++LDG PRS  QA  L+ L    D  +     D  +V   
Sbjct: 70  VNMVKERLRQPDAQEN---GWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126

Query: 197 TNR----------------------GGSL-----------KEKLEAYAELSKPLEDYYQK 223
             R                         L           K +LE Y +  + L   Y  
Sbjct: 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTY-- 184

Query: 224 QKKLLEFQVGSAPVET-WQGLLTAL 247
           +  +++ Q G A V+  +  +   L
Sbjct: 185 ENIIVKVQ-GDATVDAVFAKIDELL 208

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 37/221 (16%), Positives = 70/221 (31%), Gaps = 59/221 (26%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G   + K     ++     +  I    I R+ +   + L K+    ++RG++V +DI 
Sbjct: 5   IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIV- 196
             ++ + LE        G++LDG PR+ +QA+ L +       +I+ V+           
Sbjct: 65  IPMVLETLESKGKD---GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKN 121

Query: 197 --TNR----------------------------GGSL------------KEKLEAYAELS 214
               R                            GG+L             ++ + Y    
Sbjct: 122 RIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTV 181

Query: 215 KPL---EDYYQKQKKLLEFQV----GSAPVET-WQGLLTAL 247
                   YY+       F      G   +++    LL  L
Sbjct: 182 DGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 43/264 (16%), Positives = 76/264 (28%), Gaps = 60/264 (22%)

Query: 2   TPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFD-PD--NYYSYYQAESDSDQH 58
                     +T  P    +              AE + D     + + +   +  +   
Sbjct: 313 CRPQDLPREVLTTNPRRLSII-------------AESIRDGLATWDNWKHVNCDKLTTII 359

Query: 59  RDSLRSVTLPDTEGRER-------RRGVH---------WAFIGSPRAKKHVYAEMLSKLL 102
             SL    L   E R+            H         W  +        V  ++    L
Sbjct: 360 ESSLNV--LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSL 416

Query: 103 -----EVPRISMSSI---VRQDLSPRSSLHKQIANAVNRGEVV-SEDIIFGLLSKRLEDG 153
                +   IS+ SI   ++  L    +LH+ I +  N  +   S+D     L     D 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-----LIPPYLDQ 471

Query: 154 YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNF---K-CADNFIVTNRGGSLK--EKL 207
           Y+   IG  L  +       E +     + L   F   K   D+      G  L   ++L
Sbjct: 472 YFYSHIGHHLKNIE----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 208 EAYAE-LSKPLEDYYQKQKKLLEF 230
           + Y   +      Y +    +L+F
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 44/182 (24%)

Query: 78  GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137
            + W  + +  + + V  EML KLL   +I  +   R D S    L      A  R  + 
Sbjct: 183 KIFWLNLKNCNSPETVL-EMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQLAEIDLVVNFKCADNFIV 196
           S+     LL               +L       +Q A+  +         N  C    ++
Sbjct: 240 SKPYENCLL---------------VLLN-----VQNAKAWN-------AFNLSC--KILL 270

Query: 197 TNRGGSLKEKLEAYAELSKPLED----YYQKQK-----KLLEFQVGSAPVETWQG--LLT 245
           T R   + + L A       L+         +      K L+ +    P E         
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 246 AL 247
           ++
Sbjct: 331 SI 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.97
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.96
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.96
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.96
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.95
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.95
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.95
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.94
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.94
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.94
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.94
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.94
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.94
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.93
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.88
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.73
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.73
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.71
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.71
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.7
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.69
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.68
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.67
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.65
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.65
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.63
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.63
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.63
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.63
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.63
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.62
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.62
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.62
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.62
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.62
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.61
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.61
1via_A	175	Shikimate kinase; structural genomics, transferase	99.6
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.6
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.6
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.57
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.56
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.56
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.55
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.55
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.54
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.54
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.54
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.53
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.52
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.51
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.5
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.5
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.48
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.48
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.45
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.44
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.43
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.42
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.42
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.4
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.39
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.38
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.37
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.34
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.34
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.31
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.3
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.3
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.28
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.23
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.22
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.16
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.16
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.15
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.12
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.12
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.1
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.08
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.04
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.0
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.88
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.86
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.85
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.81
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.75
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.66
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.6
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.57
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.53
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.48
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.4
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.39
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.38
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.38
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.37
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.36
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.34
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.28
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.23
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.21
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.18
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.11
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.97
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.89
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.83
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.8
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.76
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.73
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.72
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.71
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.63
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.62
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.62
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.58
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.54
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.46
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.41
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.4
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.39
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.36
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.36
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.36
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.31
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.29
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.28
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.25
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.25
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.23
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.2
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.17
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.17
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.17
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.16
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.16
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.15
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.15
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.12
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.09
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.06
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.06
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.03
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.01
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.01
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.0
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.98
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	96.98
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.98
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.97
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.96
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.95
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.93
3bos_A	242	Putative DNA replication factor; P-loop containing	96.89
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.85
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.84
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.84
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.82
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.8
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.79
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.77
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.75
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.73
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.73
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.72
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.7
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.69
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.68
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.66
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.64
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.64
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.63
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.63
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.63
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.59
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.58
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.58
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.58
3co5_A	143	Putative two-component system transcriptional RES	96.57
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.56
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.55
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.54
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.47
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.46
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.45
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.44
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.43
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.41
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.41
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.41
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.4
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.4
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.39
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.38
3pvs_A	447	Replication-associated recombination protein A; ma	96.38
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.37
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.36
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.35
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.35
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.32
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.32
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.32
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.3
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.29
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.29
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.27
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.27
2qgz_A	308	Helicase loader, putative primosome component; str	96.26
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.26
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.22
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.21
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.2
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.2
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.19
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.18
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.16
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.15
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.15
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.15
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.12
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.12
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.12
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.12
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.08
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.07
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.06
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.06
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.05
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.05
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.04
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.03
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.03
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.02
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.01
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.01
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.01
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.01
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.0
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.0
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.0
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.99
2og2_A	359	Putative signal recognition particle receptor; nuc	95.99
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.98
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.97
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.95
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.95
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.94
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.93
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.92
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.92
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.92
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.91
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.88
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.88
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.88
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.88
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.87
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.87
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.85
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.84
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.83
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.82
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.81
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.8
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.79
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.79
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.79
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.77
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.77
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.76
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.76
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.75
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.75
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.75
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.74
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.74
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.73
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.72
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.72
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.72
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.71
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.71
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.71
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.7
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.7
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.68
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.68
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.67
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.67
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.66
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.65
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.65
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.63
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.63
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.61
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.61
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.6
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.6
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.6
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.59
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.59
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.59
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.58
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.58
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.57
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.56
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.56
1g6h_A	257	High-affinity branched-chain amino acid transport	95.56
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.56
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.55
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.55
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.54
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.54
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.54
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.53
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.53
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.53
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.52
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.52
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.5
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.5
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.5
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.49
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.48
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.48
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.48
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.48
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.48
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.48
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.46
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.41
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.41
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.38
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.38
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.38
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.36
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.36
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.35
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.35
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.35
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.34
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.32
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.32
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.31
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.29
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.29
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.29
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.28
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.28
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.28
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.27
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.27
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.27
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.26
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.25
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.24
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.21
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.21
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.21
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.21
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.2
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.17
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.17
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.16
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.16
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.14
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.13
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.12
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.11
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.1
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.09
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.07
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	95.07
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.01
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.95
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.95
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.93
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.92
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.92
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.92
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.9
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.84
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.8
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.78
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.78
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.78
3io5_A	333	Recombination and repair protein; storage dimer, i	94.77
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.76
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.75
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.74
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.72
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.68
2fna_A	357	Conserved hypothetical protein; structural genomic	94.68
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.66
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.65
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.65
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.6
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.6
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.59
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.57
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.53
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.49
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.49
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.48
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.45
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.43
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.38
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.37
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.33
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.31
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.31
2xxa_A	433	Signal recognition particle protein; protein trans	94.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.26
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.22
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.22
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.21
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.19
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.19
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.18
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.99
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	93.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.96
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	93.94
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	93.87
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	93.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.93
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	93.85
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.75
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.71
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.68
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.67
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.64
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.5
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.48
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.42
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.42
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	93.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.4
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.39
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	93.37
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.36

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=1e-38  Score=275.88  Aligned_cols=176  Identities=18%  Similarity=0.333  Sum_probs=163.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .++++|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++.+|+++|++++..++.+++.+..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999976432


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHH
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYY  221 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y  221 (268)
                       ..+|||+|||||+..|++.|++. ..+++||+|+||++++.+|+             ++.+++|++.|++++.|+.+||
T Consensus       107 -~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y  185 (217)
T 3umf_A          107 -KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHY  185 (217)
T ss_dssp             -TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             -cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             56899999999999999999864 68999999999999999998             4568999999999999999999


Q ss_pred             HhCCcEEEEeCCCCHHHHHHHHHHHHHhhcc
Q 024390          222 QKQKKLLEFQVGSAPVETWQGLLTALHLQHI  252 (268)
Q Consensus       222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~  252 (268)
                      ++.++++.||+++++++||++|.+.|...++
T Consensus       186 ~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G~  216 (217)
T 3umf_A          186 KQQNKVITIDASGTVDAIFDKVNHELQKFGV  216 (217)
T ss_dssp             HTTTCEEEEETTSCHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999987554

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=2e-38  Score=272.08  Aligned_cols=167  Identities=29%  Similarity=0.471  Sum_probs=155.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++.+|+++|++++.+++.+++.+     .
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~   75 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H   75 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999864     4


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------------------------------h
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------------------------------G  200 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------------------------------~  200 (268)
                      .|||+|||||+..|++.|+..     ..+++||+|+||++++++|+                                 +
T Consensus        76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~  155 (206)
T 3sr0_A           76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP  155 (206)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred             CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence            579999999999999998754     46899999999999999997                                 2


Q ss_pred             HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          201 GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       201 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +.+++|++.|++++.|+.+||++.++++.|||++++++|+++|.++|.+.
T Consensus       156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e~  205 (206)
T 3sr0_A          156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDG  205 (206)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccC
Confidence            46899999999999999999999999999999999999999999999753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=1.6e-34  Score=251.00  Aligned_cols=170  Identities=23%  Similarity=0.411  Sum_probs=141.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ..|++.|+|+|||||||+|+.|+++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+..  
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~--   84 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD--   84 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG--
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc--
Confidence            568899999999999999999999999999999999999998999999999999999999999999999999998763  


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh------------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR------------------------------------  199 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl------------------------------------  199 (268)
                      ...|||||||||+..|++.|++. ..+|+||+|+||++++++|+                                    
T Consensus        85 ~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R  164 (230)
T 3gmt_A           85 CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR  164 (230)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence            35799999999999999999865 57899999999999999997                                    


Q ss_pred             ----hHHHHHHHHHHHHHchHHHHHHHhC-----------CcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          200 ----GGSLKEKLEAYAELSKPLEDYYQKQ-----------KKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       200 ----~~~~~~rl~~y~~~~~~l~~~y~~~-----------~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                          ++.+++|++.|++++.|+.+||.+.           ++++.|||++++++|+++|.++|.
T Consensus       165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~  228 (230)
T 3gmt_A          165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV  228 (230)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence                3468999999999999999999973           789999999999999999998875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.97  E-value=9.4e-30  Score=222.70  Aligned_cols=171  Identities=25%  Similarity=0.450  Sum_probs=157.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .++++|+|+|+|||||||+|+.|++++|++|+|+++++|+....+++.++.+++++.+|..+|++++..++..++...  
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--  104 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTP--  104 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSG--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcc--
Confidence            367899999999999999999999999999999999999999999999999999999999999999999999999865  


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh------------------------------
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG------------------------------  200 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~------------------------------  200 (268)
                      ..+.+||+||||++..|++.|++.     ..+|.||+|++|++++++|+.                              
T Consensus       105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  184 (243)
T 3tlx_A          105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE  184 (243)
T ss_dssp             GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred             cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence            347899999999999999888764     468999999999999999972                              


Q ss_pred             ----------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          201 ----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       201 ----------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                                +.+++|+..|++++.++.+||.+.+.++.||++.++++|+++|.++|.
T Consensus       185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                      367899999999999999999999999999999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.96  E-value=5.1e-29  Score=212.85  Aligned_cols=169  Identities=24%  Similarity=0.464  Sum_probs=154.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|++++|++++++++++|+...++++.++.+.+.+..|..++++.+..++.+++...  ..+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~--~~~   78 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKD--DCE   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSG--GGT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc--ccc
Confidence            579999999999999999999999999999999999999889999999999999999999999999999998865  247


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhc-----CCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRG---------------------------------  200 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~-----~~d~vV~Ld~~~e~l~~Rl~---------------------------------  200 (268)
                      .+||+||||++..|++.+.+..     .+|.+|+|++|++++++|+.                                 
T Consensus        79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  158 (216)
T 3dl0_A           79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY  158 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence            8999999999999988887542     58999999999999999973                                 


Q ss_pred             -------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          201 -------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       201 -------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                             +.+++|+..|.+...++.+||.+.+.++.||++.++++++++|.++|..
T Consensus       159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                   3578999999999999999999888899999999999999999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.96  E-value=1.3e-28  Score=210.07  Aligned_cols=169  Identities=24%  Similarity=0.442  Sum_probs=154.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|++++|++++++++++|+...++++.++.+.+.+..|..++++++..++.+++....  .+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~   78 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence            5799999999999999999999999999999999999988899999999999999999999999999999988652  46


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhc-----CCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRG---------------------------------  200 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~-----~~d~vV~Ld~~~e~l~~Rl~---------------------------------  200 (268)
                      .+||+||||++..|++.+.+..     .+|.+|+|++|++++++|+.                                 
T Consensus        79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  158 (216)
T 3fb4_A           79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY  158 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence            8999999999999988887542     48999999999999999973                                 


Q ss_pred             -------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          201 -------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       201 -------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                             +.+++|+..|.+...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus       159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence                   3578999999999999999999988899999999999999999999874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=1.8e-28  Score=210.51  Aligned_cols=170  Identities=23%  Similarity=0.441  Sum_probs=149.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .++++|+|+|+|||||||+|+.|++++|++++++|+++++..+.++++|+.+++++.+|+.++++.+.+++.+++...  
T Consensus         3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--   80 (217)
T 3be4_A            3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG--   80 (217)
T ss_dssp             GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--
Confidence            367899999999999999999999999999999999999988888889999999999999999999999999888764  


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhhH-----------------------------
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG-----------------------------  201 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~~-----------------------------  201 (268)
                      ..+.+||+||||++..|++.++++     ..||++|+|++|++++.+|+..                             
T Consensus        81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  160 (217)
T 3be4_A           81 VCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE  160 (217)
T ss_dssp             TTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             ccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccc
Confidence            347889999999999888887642     3689999999999999999721                             


Q ss_pred             -----------HHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          202 -----------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       202 -----------~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                                 .+++|+..|.++..++.++|.+.+.++.||+++++++|+++|.+.|
T Consensus       161 ~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          161 PLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence                       3468899999999999999988778999999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.96  E-value=2.4e-28  Score=211.82  Aligned_cols=174  Identities=30%  Similarity=0.511  Sum_probs=153.9

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      +.++++|+|+|+|||||||+|+.|++++++.++++++++++....++++++.+++++..|..++++++..++.+++....
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   92 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP   92 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999999999999999887788899999999999999999999999999887652


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh-----------------------------
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG-----------------------------  200 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~-----------------------------  200 (268)
                        .+.|||+||||++..|++.|.++     ..+|++|+|+++++++.+|+.                             
T Consensus        93 --~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~  170 (233)
T 1ak2_A           93 --CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG  170 (233)
T ss_dssp             --GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred             --ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence              46789999999999998877654     358999999999999999972                             


Q ss_pred             -----------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          201 -----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       201 -----------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                                 +.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|.+.|...
T Consensus       171 ~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          171 EPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             CBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence                       13678899999999999999987778999999999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.96  E-value=4.5e-28  Score=207.89  Aligned_cols=171  Identities=26%  Similarity=0.513  Sum_probs=151.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH-cCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE-DGY  154 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~-~~~  154 (268)
                      +++++|+|+|+|||||||+|+.|++++|+.++++|+++++..+.+++.++.+++++..|+.++++.+..++.+++. .. 
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~-   80 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP-   80 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc-
Confidence            4678999999999999999999999999999999999999888889999999999999999999999999988887 32 


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh-----------------------------
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG-----------------------------  200 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~-----------------------------  200 (268)
                       ..+.+||+||||++..|++.++++     ..||++|+|+++++++++|+.                             
T Consensus        81 -~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~  159 (220)
T 1aky_A           81 -ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTG  159 (220)
T ss_dssp             -GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTC
T ss_pred             -ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccc
Confidence             246789999999999888776543     468999999999999999972                             


Q ss_pred             -----------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          201 -----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       201 -----------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                                 +.+++|++.|.+...++.++|.+.+.++.||+++++++|+++|.+.|.
T Consensus       160 ~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          160 EALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             CBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                       135678999999999999999877789999999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.95  E-value=1.5e-27  Score=203.89  Aligned_cols=167  Identities=26%  Similarity=0.491  Sum_probs=148.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|++++|+.++++++++|+.+..+++.++.+++++..|..+|++++..++.+++....  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~   78 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence            5799999999999999999999999999999999999877778889999999999999999999999998887642  35


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhh-------------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-------------------------------------  200 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~-------------------------------------  200 (268)
                      .+||+||||++..|++.|... ..||++|+|+++++++++|+.                                     
T Consensus        79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d  158 (214)
T 1e4v_A           79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD  158 (214)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred             CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence            789999999999998887654 468999999999999999962                                     


Q ss_pred             ---HHHHHHHHHHHHHchHHHHHHHhC-----CcEEEEeCCCCHHHHHHHHHHHH
Q 024390          201 ---GSLKEKLEAYAELSKPLEDYYQKQ-----KKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       201 ---~~~~~rl~~y~~~~~~l~~~y~~~-----~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                         +.+++|++.|.+...++.++|.+.     +.++.||+++++++|+++|++.|
T Consensus       159 d~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          159 DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence               246889999999999999999864     57899999999999999999876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.95  E-value=4.8e-27  Score=202.63  Aligned_cols=166  Identities=19%  Similarity=0.330  Sum_probs=148.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|+|||||||+|+.|++++|++++++|+++|+....+++.++.+++++.+|+.++++.+..++.+++...  . +
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g   77 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K   77 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence            579999999999999999999999999999999999988888899999999999999999999999998888763  2 6


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------------------------------  200 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~---------------------------------  200 (268)
                      .+||+||||++..|++.+.++     ..||++|+|++|++++++|+.                                 
T Consensus        78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~  157 (223)
T 2xb4_A           78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA  157 (223)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred             CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence            789999999999888888653     368999999999999999971                                 


Q ss_pred             ---------H-HHHHHHHHHHHHchHHHH---HHHh-----CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          201 ---------G-SLKEKLEAYAELSKPLED---YYQK-----QKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       201 ---------~-~~~~rl~~y~~~~~~l~~---~y~~-----~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                               + .+++|+..|++.+.|+.+   +|.+     .+.++.||+++++++|+++|++.|
T Consensus       158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          158 LSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             EECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                     2 567788899999999999   9986     567899999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.95  E-value=3e-26  Score=197.61  Aligned_cols=170  Identities=23%  Similarity=0.417  Sum_probs=150.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|+|||||||+|+.|++++|+.++++|++++.....++++|+.+++++..|..++++....++.+++.+.   
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~---   82 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL---   82 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC---
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc---
Confidence            56789999999999999999999999999999999999988778889999999999999999988888888887752   


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh------------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------------  200 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------------------------------  200 (268)
                      .+.+||+||||++..|++.++....+|++|+|+++.+++++|+.                                    
T Consensus        83 ~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~  162 (227)
T 1zd8_A           83 TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE  162 (227)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence            35689999999999898888877789999999999999998862                                    


Q ss_pred             ----HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          201 ----GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       201 ----~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                          +.+++|+..|.+...++.++|.+.+.++.||++ ++++|+++|.++|...
T Consensus       163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~  215 (227)
T 1zd8_A          163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK  215 (227)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence                245788899999999999999877789999998 9999999999999754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.94  E-value=1.2e-25  Score=188.18  Aligned_cols=173  Identities=17%  Similarity=0.338  Sum_probs=149.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .++++|+|+|+|||||||+|+.|++++|+++++++++++.....+++.++.+++.+..|+.++.+....++.+.+.... 
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-   85 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-   85 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-
Confidence            3567899999999999999999999999999999999999877778899999999999999999888888877776432 


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH-------------HHHHHHHHHHHHchHHHHHH
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELSKPLEDYY  221 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l~~~y  221 (268)
                      ..+.+||+||+|++..|++.+... ..++++|+|++|++++.+|+..             .+++|+..|.....++.++|
T Consensus        86 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  165 (196)
T 2c95_A           86 NTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFY  165 (196)
T ss_dssp             TTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            246789999999999888777653 5789999999999999999832             34678888888888888888


Q ss_pred             HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          222 QKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ...+.++.||++.++++++++|.+.+..
T Consensus       166 ~~~~~~~~Id~~~~~e~v~~~i~~~l~~  193 (196)
T 2c95_A          166 EKRGIVRKVNAEGSVDSVFSQVCTHLDA  193 (196)
T ss_dssp             HHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            8767788899999999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.94  E-value=1.4e-25  Score=189.56  Aligned_cols=175  Identities=21%  Similarity=0.392  Sum_probs=146.3

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      +.++++|+|+|+|||||||+|+.|++++|+.++++|+++++.. ..++..++.+++++.+|+..+++....++.+.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            4567899999999999999999999999999999999999864 456778889999999999888887777777666432


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH-------------HHHHHHHHHHHHchHHHH
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELSKPLED  219 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l~~  219 (268)
                      ...+..+||+||+|++..++..++.. ..+|++|+|++|++++++|+..             .+++|+..|.+...++.+
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~  171 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIE  171 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence            11123689999999999988888764 4689999999999999999832             345678888888888888


Q ss_pred             HHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          220 YYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +|...+.++.||++.++++++++|.+.+..
T Consensus       172 ~~~~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          172 YFETKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            888777888899999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.94  E-value=6e-26  Score=191.88  Aligned_cols=170  Identities=26%  Similarity=0.472  Sum_probs=146.0

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      +.++++|+|+|+|||||||+|+.|++++|++++++++++++....+++.++.+++.+.+|+.++++....++.+++... 
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~-   95 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP-   95 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence            3567899999999999999999999999999999999999987778889999999999999999998888888887653 


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh---------HHHHHHHHHHHHHchHHHHH
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELSKPLEDY  220 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~  220 (268)
                       ..+.+||+||+|++..|.+.++.+     ..++++|+|++|++++.+|+.         +.+++|+..|.....++.++
T Consensus        96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~  174 (201)
T 2cdn_A           96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEY  174 (201)
T ss_dssp             -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred             -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence             246789999999999888777653     248999999999999999983         34667888888888888787


Q ss_pred             HHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          221 YQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       221 y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      |  ...++.||++.++++++++|.+.|.
T Consensus       175 ~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          175 Y--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             T--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             h--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence            7  3468889999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.94  E-value=5.1e-26  Score=195.33  Aligned_cols=171  Identities=22%  Similarity=0.344  Sum_probs=146.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|+|||||||+++.|++++++.++++|+++++....+++.|+.+++++.+|+.+|++....++.+++....+ 
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   82 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA-   82 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence            5678999999999999999999999999999999999998777888999999999999999999888888887764321 


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhh-----------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-----------------------------------  200 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~-----------------------------------  200 (268)
                      ...+||+||||++..|++.+... ..|+++|+|+++.+++.+|+.                                   
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~  162 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT  162 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred             cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence            25689999999999888888754 468999999999999999962                                   


Q ss_pred             -HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          201 -GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       201 -~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       +.+++|+..|..+..++.++|..  .++.||+++++++++++|.+.|...
T Consensus       163 ~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~  211 (222)
T 1zak_A          163 EEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI  211 (222)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence             24677888888888888887753  5889999999999999999999753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.94  E-value=3.8e-25  Score=185.45  Aligned_cols=173  Identities=24%  Similarity=0.424  Sum_probs=146.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|+|||||||+|+.|++++|+.+++++++++.....+++.+..+.+.+..|+.++++....++.+.+.... .
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~   89 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G   89 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence            457899999999999999999999999999999999998876677889999999999999999888888877765432 2


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhh-------------HHHHHHHHHHHHHchHHHHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~~y~  222 (268)
                      .+.+||+||+|.+..|++.+.+. ..+|++|+|++|++++.+|+.             +.+++|+..|.....++.++|.
T Consensus        90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  169 (199)
T 2bwj_A           90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE  169 (199)
T ss_dssp             SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999888777653 378999999999999999972             3456777778888888888887


Q ss_pred             hCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          223 KQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       223 ~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ..+.++.||++.++++++++|.+.+...
T Consensus       170 ~~~~~~~id~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          170 TKTQLHKINAEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            7667788999999999999999988753

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.94  E-value=3.2e-25  Score=184.43  Aligned_cols=166  Identities=28%  Similarity=0.448  Sum_probs=140.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .++++|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.++.+++.+.+|...+++....++.+.+.    
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----   77 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----   77 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence            3678999999999999999999999999999999999999877788899999999999999998888877776553    


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhhc-----CCCeEEEEecCHHHHHhhhhH-------------HHHHHHHHHHHHchHH
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELSKPL  217 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~~-----~~d~vV~Ld~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l  217 (268)
                         .++|+||+|++..|...++.+.     .++.+|+|++|++++.+|+..             .+++|+..|.....++
T Consensus        78 ---~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l  154 (186)
T 3cm0_A           78 ---ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPL  154 (186)
T ss_dssp             ---SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence               2499999999988877665431     378999999999999999732             3456778888887888


Q ss_pred             HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .++|...+.++.||++.++++++++|.+.+.
T Consensus       155 ~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             HHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence            8888876678899999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.94  E-value=8.7e-25  Score=181.91  Aligned_cols=171  Identities=18%  Similarity=0.294  Sum_probs=147.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.++.+.+.+..|...+++....++...+...   
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~---   81 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN---   81 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence            45789999999999999999999999999999999999887677888999999999999999888888888887653   


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-c---CCCeEEEEecCHHHHHhhhh-------------HHHHHHHHHHHHHchHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-A---EIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELSKPLED  219 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-~---~~d~vV~Ld~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~  219 (268)
                      .+.++|+||+|++..+.+.+... .   .+|++|+|++|++++.+|+.             +.+++|+..|.+...++.+
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~  161 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID  161 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence            46789999999999887777543 2   58899999999999999983             3456778888888888888


Q ss_pred             HHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          220 YYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +|...+.++.||++.++++++++|.+.+...
T Consensus       162 ~~~~~~~~~~id~~~~~~~~~~~i~~~l~~~  192 (194)
T 1qf9_A          162 HYNKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            8887777888999999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.93  E-value=1e-24  Score=181.77  Aligned_cols=173  Identities=18%  Similarity=0.390  Sum_probs=142.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-  154 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-  154 (268)
                      ++++|+|+|+|||||||+|+.|++++|++++++|++++... +.++.+++.+++.+..|...++++...++..++.... 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            45789999999999999999999999999999999998865 3456788889999989998888877776665554311 


Q ss_pred             -ccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh-------------HHHHHHHHHHHHHchH
Q 024390          155 -YRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELSKP  216 (268)
Q Consensus       155 -~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~  216 (268)
                       ...+.+||+||+|++..+.+.+...    ..++++|+|++|++++++|+.             +.+++|+..|.+...+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence             1236789999999998877655432    257899999999999999983             2356788999999999


Q ss_pred             HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          217 LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       217 l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +.++|.+.+.++.||++.++++++++|.+.+..
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            999998877788999999999999999998875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.88  E-value=7.8e-21  Score=165.61  Aligned_cols=170  Identities=19%  Similarity=0.390  Sum_probs=144.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.+|+|+|++||||||+++.|++++|+.+++.|++++.....+...+..+...++++...|+..+.+.+...+...   
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~---  102 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR---  102 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence            35689999999999999999999999999999999998865555677888888888888889888888887766542   


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh------------------------------------
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------------  200 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------------------------------  200 (268)
                      .+.+|++||+|++..+++.+.....++++|+|+++++++++|+.                                    
T Consensus       103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld  182 (246)
T 2bbw_A          103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE  182 (246)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred             CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence            35679999999988777777766678999999999999987751                                    


Q ss_pred             ----HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          201 ----GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       201 ----~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                          +.+.+++..|.++..++.++|.+.+.++.||++.+ ++|+++|.+.+...
T Consensus       183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~  235 (246)
T 2bbw_A          183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK  235 (246)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence                24577888999998999999998888999999988 99999999999764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.77  E-value=1.1e-17  Score=135.90  Aligned_cols=158  Identities=16%  Similarity=0.118  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC----ChhHHHHHHHHhc-cCcccHHHHHHHHHHHHHcC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----SSLHKQIANAVNR-GEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~----~~~g~~i~~~l~~-G~~ip~~~~~~ll~~~l~~~  153 (268)
                      +.|+|+|+|||||||+|+.| +.+|+.++++++++++.....    ...+......... |.    +....++.+.+.. 
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~-   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD----GVVARLCVEELGT-   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCT----THHHHHHHHHHCS-
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCH----HHHHHHHHHHHHh-
Confidence            67999999999999999999 999999999999999865321    2223333333332 32    3344555555533 


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH-----------HHHHHHHHHHHHchHHHHHH
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELSKPLEDYY  221 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~~y  221 (268)
                        ..+..||+||+ ++..+.+.+.+. ..++++|+|++|.+++.+|+..           .+.+|+....  ..++..++
T Consensus        76 --~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~--~~~~~~~~  150 (179)
T 3lw7_A           76 --SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREEL--KLGIGEVI  150 (179)
T ss_dssp             --CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHH--HHTHHHHH
T ss_pred             --cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhh--ccChHhHH
Confidence              24678999999 888888888775 4678999999999999999832           2223321111  11133333


Q ss_pred             HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          222 QKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ...+  +.||++.+++++.++|.+++..
T Consensus       151 ~~ad--~vId~~~~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          151 AMAD--YIITNDSNYEEFKRRCEEVTDR  176 (179)
T ss_dssp             HTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred             HhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence            3222  4567777999999999998874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.73  E-value=5e-17  Score=140.77  Aligned_cols=168  Identities=11%  Similarity=0.057  Sum_probs=110.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHH-HHHHHHHHHcCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-FGLLSKRLEDGY  154 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~-~~ll~~~l~~~~  154 (268)
                      .+++.|+|+|+|||||||+++.|++.++. .++   ++....+.+++.++.+++++.+|...++... .-...++.....
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~---~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~   99 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYD---VIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   99 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSC---EEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCC---ceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999974 322   2223356678899999999988875433322 222233333210


Q ss_pred             ------ccCccEEEEc----------CCcCCHHHH--HHHHhh----cCCCeEEEEecCHHHHHhhhhHHH--HHH----
Q 024390          155 ------YRGEIGFILD----------GLPRSRIQA--EILDQL----AEIDLVVNFKCADNFIVTNRGGSL--KEK----  206 (268)
Q Consensus       155 ------~~~~~g~IlD----------GfPr~~~qa--~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~--~~r----  206 (268)
                            ...+..+|+|          |+|++..+.  +.++.+    ..||++|+|++|++++.+|+..+-  ..|    
T Consensus       100 ~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~  179 (229)
T 4eaq_A          100 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE  179 (229)
T ss_dssp             CCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHH
T ss_pred             HHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhh
Confidence                  1245678999          999875443  344432    479999999999999999984321  111    


Q ss_pred             HHHHHHHchHHHHHHHh-----CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          207 LEAYAELSKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       207 l~~y~~~~~~l~~~y~~-----~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      -..|.+.   +.+.|.+     .+.++.||++.++++++++|.+.|...
T Consensus       180 ~~~~~~r---v~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          180 DLKFHEK---VIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY  225 (229)
T ss_dssp             HHHHHHH---HHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHH---HHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            1122222   2222221     236889999999999999999998753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.73  E-value=9.5e-17  Score=133.32  Aligned_cols=153  Identities=15%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH-----------H
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-----------G  144 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~-----------~  144 (268)
                      |+|+|+|+|||||||+++.|++++   |++++++++      +.++..++.+++.+.+|+..++....           +
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   999998852      34566788888888888665553221           1


Q ss_pred             HHHHHHHcCCccCccEEEEc----------CCcCCH--HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhH-------
Q 024390          145 LLSKRLEDGYYRGEIGFILD----------GLPRSR--IQAEILDQL----AEIDLVVNFKCADNFIVTNRGG-------  201 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlD----------GfPr~~--~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~-------  201 (268)
                      ++...+.     .+..+|+|          |+|+..  .+...+..+    ..+|++|+|+||++++++|+..       
T Consensus        75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~  149 (195)
T 2pbr_A           75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENK  149 (195)
T ss_dssp             THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCH
T ss_pred             HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchH
Confidence            1222222     34567777          776643  244333321    2689999999999999999832       


Q ss_pred             HHHHHH-HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          202 SLKEKL-EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       202 ~~~~rl-~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .+.+|+ ..|.+.    ...|   +.++.||++.++++++++|.+.+..
T Consensus       150 ~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~  191 (195)
T 2pbr_A          150 EFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSG  191 (195)
T ss_dssp             HHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            222333 223221    1122   4678899999999999999998864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=9.6e-17  Score=135.29  Aligned_cols=154  Identities=14%  Similarity=0.166  Sum_probs=101.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ++..|+|+|+|||||||+++.|++.+|+.+++++++++....      ..+.+.+. .|.....+....++....     
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g------~~i~~~~~~~~~~~~~~~e~~~l~~l~-----   92 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH------KTVGELFTERGEAGFRELERNMLHEVA-----   92 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC------CcHHHHHHhcChHHHHHHHHHHHHHHh-----
Confidence            566899999999999999999999999999999998877532      12333332 232222333333443322     


Q ss_pred             cCccEEEEc---CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-H-------------HHHHHHHHHHHHchHHH
Q 024390          156 RGEIGFILD---GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-G-------------SLKEKLEAYAELSKPLE  218 (268)
Q Consensus       156 ~~~~g~IlD---GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-~-------------~~~~rl~~y~~~~~~l~  218 (268)
                       ...++|++   |.+......+.+.+   ++.+|+|++|.+++.+|+. .             .+.+++..+.+   ...
T Consensus        93 -~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~---~r~  165 (199)
T 3vaa_A           93 -EFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALE---KRA  165 (199)
T ss_dssp             -TCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHH---HHH
T ss_pred             -hcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHH---HHH
Confidence             23567777   55655444444443   6889999999999999985 1             11233333333   334


Q ss_pred             HHHHhCCcEEEEeCCC-CHHHHHHHHHHHHHhh
Q 024390          219 DYYQKQKKLLEFQVGS-APVETWQGLLTALHLQ  250 (268)
Q Consensus       219 ~~y~~~~~l~~Ida~~-s~eev~~~I~~~L~~~  250 (268)
                      .+|..  .-+.||++. ++++++++|.+.|...
T Consensus       166 ~~y~~--ad~~Idt~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          166 PFYTQ--AQYIFNADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             HHHTT--SSEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHhh--CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            45654  235677665 9999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.71  E-value=2.7e-17  Score=142.59  Aligned_cols=174  Identities=15%  Similarity=0.122  Sum_probs=108.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC-
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG-  153 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~-  153 (268)
                      .+++.|+|+|++||||||+++.|+++++..+++++ +++....+.++++|+.+++++.+|...|.....-+..++.... 
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~  102 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLA  102 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999865443333 1111123567889999999999886555443333333333211 


Q ss_pred             -----CccCccEEEEcCCcCC------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhH-----HHHHHH
Q 024390          154 -----YYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG-----SLKEKL  207 (268)
Q Consensus       154 -----~~~~~~g~IlDGfPr~------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~-----~~~~rl  207 (268)
                           ....+..+|.|.|..+            ..+...++.+    ..||++|+|++|++++.+|+..     +++..-
T Consensus       103 ~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~  182 (227)
T 3v9p_A          103 LVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESES  182 (227)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CCHH
T ss_pred             HHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhhhh
Confidence                 0123566788866433            2233333332    5799999999999999999842     222211


Q ss_pred             HHHHHHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          208 EAYAELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       208 ~~y~~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ..|.+..... ..+... .+.+++||+++++++|.++|.+.|..
T Consensus       183 ~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          183 DAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            2333332221 122222 34699999999999999999998864

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.70  E-value=1.4e-15  Score=129.79  Aligned_cols=167  Identities=11%  Similarity=0.030  Sum_probs=105.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH-HHHHHHc--
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL-LSKRLED--  152 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l-l~~~l~~--  152 (268)
                      ++.|+|.|++||||||+++.|++++.  ..++-      ...+.+++.|+.+++.+.++..++.....-+ ..+|.++  
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~------~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM------TREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE------EESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE------eeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999983  33332      2346678999999999988876654332111 1122111  


Q ss_pred             ----CCccCccEEEEcCCc----------CC--HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH------HHHH
Q 024390          153 ----GYYRGEIGFILDGLP----------RS--RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS------LKEK  206 (268)
Q Consensus       153 ----~~~~~~~g~IlDGfP----------r~--~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~------~~~r  206 (268)
                          .....+..+|.|.|.          +.  ..+...+..+    ..||++|+|++|++++.+|+..+      ++..
T Consensus        76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~  155 (205)
T 4hlc_A           76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE  155 (205)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHH
T ss_pred             HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhcc
Confidence                001134556667543          22  2233334332    47999999999999999998322      1121


Q ss_pred             HHHHHHHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          207 LEAYAELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       207 l~~y~~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      -..|.+.+... .+.... .++++.||+++++++|.++|.+.|...
T Consensus       156 ~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~  201 (205)
T 4hlc_A          156 DLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY  201 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            22344333221 222222 346999999999999999999988753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.69  E-value=8.6e-17  Score=135.81  Aligned_cols=168  Identities=13%  Similarity=0.165  Sum_probs=111.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHH-H------
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS-K------  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~-~------  148 (268)
                      .++++|+|+|+|||||||+|+.|+++++..++++ +++++. ..+++.++.+++++..+..++......+.. +      
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999888888 455543 335778888888887776666543322221 1      


Q ss_pred             HHHcCCccCccEEEEcCCcCCH--HHH-------HHHHh----hcCCCeEEEEecCHHHHHhhhhHHHHHHH--HHHHHH
Q 024390          149 RLEDGYYRGEIGFILDGLPRSR--IQA-------EILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAEL  213 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr~~--~qa-------~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl--~~y~~~  213 (268)
                      .+... ...+..+|+|+++.+.  .|.       +.+..    ...+|++|+|++|++++.+|+..+ ..|+  ..+.+ 
T Consensus        86 ~i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~~~~~~~~-  162 (212)
T 2wwf_A           86 EIKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIYEKVETQK-  162 (212)
T ss_dssp             HHHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTTCSHHHHH-
T ss_pred             HHHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-cccccHHHHHH-
Confidence            11110 1135679999998642  121       22221    246899999999999999998421 0111  11221 


Q ss_pred             chHHHHHHHh---CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          214 SKPLEDYYQK---QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       214 ~~~l~~~y~~---~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                        .+...|.+   ...++.||++.++++++++|.+.+...
T Consensus       163 --~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          163 --KIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             --HHHHHGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence              12233432   235788999999999999999998754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.68  E-value=1.3e-15  Score=128.28  Aligned_cols=158  Identities=13%  Similarity=0.076  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH---HHHHHHHHcC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF---GLLSKRLEDG  153 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~---~ll~~~l~~~  153 (268)
                      ++++|+|+|+|||||||+++.|++.+|+.+++.+++....          ....+..|....+....   ..+...+   
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~---   83 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL---   83 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence            3568999999999999999999999999999998775321          11122334433332222   2223333   


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhhc-CCCeEEEEecCHHHHHhhhhHHHH-----HHHHHHHHHchHHHHHHHhCCcE
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGGSLK-----EKLEAYAELSKPLEDYYQKQKKL  227 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~-~~d~vV~Ld~~~e~l~~Rl~~~~~-----~rl~~y~~~~~~l~~~y~~~~~l  227 (268)
                        ..+.++|+|+......+.+.+.... .++.+|+|++|.+++.+|+..+-.     +.++...+...++   + .....
T Consensus        84 --~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~---~-~~~~~  157 (202)
T 3t61_A           84 --ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDP---R-GEVRT  157 (202)
T ss_dssp             --TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCC---T-TSTTE
T ss_pred             --hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCC---C-CCCCe
Confidence              2467899998877777777776543 457899999999999999954321     1121111111111   1 12246


Q ss_pred             EEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390          228 LEFQVGSAPVETWQGLLTALHLQHIN  253 (268)
Q Consensus       228 ~~Ida~~s~eev~~~I~~~L~~~~~~  253 (268)
                      +.||++.++++++++|.+.|...++.
T Consensus       158 ~~Id~~~~~~e~~~~I~~~l~~~~~~  183 (202)
T 3t61_A          158 VAVDVAQPLAEIVREALAGLARLAEN  183 (202)
T ss_dssp             EEEESSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence            78999999999999999999877644

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.67  E-value=5.7e-16  Score=128.31  Aligned_cols=162  Identities=9%  Similarity=0.101  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccH--HHHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSE--DIIFGLLSKRL  150 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~--~~~~~ll~~~l  150 (268)
                      ++|+|+|+|||||||+|+.|+++++     +.+++.++++++.+ ......+.     -..+...++  ......+..++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-----DEMRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-----HHHTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch-----hhhhcCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999998     88999999887654 22111000     011223333  22222233333


Q ss_pred             HcCC-ccCccEEEEcCCcCCHHH--------HHHHHhhcCCCeEEEEecCHHHHHhh-hhH--HH------HHHHH---H
Q 024390          151 EDGY-YRGEIGFILDGLPRSRIQ--------AEILDQLAEIDLVVNFKCADNFIVTN-RGG--SL------KEKLE---A  209 (268)
Q Consensus       151 ~~~~-~~~~~g~IlDGfPr~~~q--------a~~l~~~~~~d~vV~Ld~~~e~l~~R-l~~--~~------~~rl~---~  209 (268)
                      .... ...+..+|+||++....|        .+.+... .++.+|+|++|++++++| +..  +-      .+.+.   .
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~  155 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETIN  155 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHH
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHH
Confidence            2210 013678999997543322        2333333 589999999999998866 422  10      11111   1


Q ss_pred             HHHHchHHHHHHHhCCcEEEE-eCCCCHHHHHHHHHHHH
Q 024390          210 YAELSKPLEDYYQKQKKLLEF-QVGSAPVETWQGLLTAL  247 (268)
Q Consensus       210 y~~~~~~l~~~y~~~~~l~~I-da~~s~eev~~~I~~~L  247 (268)
                      ..+........|. ...++.| |++.++++++++|.++|
T Consensus       156 ~~~~~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          156 FARYAATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            1112222233332 2457888 98999999999999876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.65  E-value=1.3e-15  Score=127.81  Aligned_cols=161  Identities=15%  Similarity=0.166  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHH----
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR----  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~----  149 (268)
                      +++.|+|+|+|||||||+++.|++++ |+.++++..     ....+..++.+++++..+..++.... .++  .++    
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~-----~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~   76 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF-----PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA   76 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES-----SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec-----CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence            56889999999999999999999999 577777531     11145678888888876654443322 221  111    


Q ss_pred             --HHcCCccCccEEEEcCCcCCHH--H------HHHHHh----hcCCCeEEEEecCHHHHHhhh-----h-HHHHHHHHH
Q 024390          150 --LEDGYYRGEIGFILDGLPRSRI--Q------AEILDQ----LAEIDLVVNFKCADNFIVTNR-----G-GSLKEKLEA  209 (268)
Q Consensus       150 --l~~~~~~~~~g~IlDGfPr~~~--q------a~~l~~----~~~~d~vV~Ld~~~e~l~~Rl-----~-~~~~~rl~~  209 (268)
                        +... ...+..+|+|+||.+..  |      .+.+..    ...||++|+|++|++++.++.     + ..+.+|+..
T Consensus        77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl~~  155 (204)
T 2v54_A           77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQ  155 (204)
T ss_dssp             HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHHHH
T ss_pred             HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHHHH
Confidence              1110 11356789999886532  1      122222    146899999999999998721     1 133333332


Q ss_pred             -HHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          210 -YAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       210 -y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       |.+..    +  .....+++||++.++++++++|.+.+...
T Consensus       156 ~y~~~~----~--~~~~~~~~Id~~~~~~~v~~~i~~~l~~~  191 (204)
T 2v54_A          156 EYKKMI----E--EGDIHWQIISSEFEEDVKKELIKNIVIEA  191 (204)
T ss_dssp             HHHHHH----T--TCSSCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----H--hCCCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence             32211    0  01236789999999999999999998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.65  E-value=1.6e-15  Score=130.11  Aligned_cols=167  Identities=12%  Similarity=0.071  Sum_probs=106.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccHH-HHH-------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSED-IIF-------  143 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~~-~~~-------  143 (268)
                      +++.|+|+|++||||||+++.|++++....++...+.|  .+.++++|+.+++++..+     ..+... ...       
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~   79 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV   79 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence            47899999999999999999999998543331111222  356789999999998732     223322 111       


Q ss_pred             ----HHHHHHHHcCCccCccEEEEcCCcCC------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH-
Q 024390          144 ----GLLSKRLEDGYYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS-  202 (268)
Q Consensus       144 ----~ll~~~l~~~~~~~~~g~IlDGfPr~------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~-  202 (268)
                          +.|...+.     .+..+|.|-|..+            ..+...++.+    ..||++|+|++|++++++|+..+ 
T Consensus        80 ~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~  154 (213)
T 4tmk_A           80 QLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG  154 (213)
T ss_dssp             HHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence                22233333     3556777754321            2333334432    47999999999999999998433 


Q ss_pred             ----HHHHHHHHHHHchHHHH-HHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          203 ----LKEKLEAYAELSKPLED-YYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       203 ----~~~rl~~y~~~~~~l~~-~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                          ++++-..|.+....... +....+.+++||+++++++|+++|.+.|...
T Consensus       155 ~~dr~E~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4tmk_A          155 ELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW  207 (213)
T ss_dssp             SCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence                11111234443333222 2222357999999999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.63  E-value=2.7e-15  Score=126.12  Aligned_cols=159  Identities=14%  Similarity=0.157  Sum_probs=94.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCc---ccHHHHHHHH--HHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEV---VSEDIIFGLL--SKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~---ip~~~~~~ll--~~~  149 (268)
                      ++++|+|+|+|||||||+++.|+++++..  ++.+.          .+.++.+++.+..+..   .... ...++  ..+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~r   71 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPL-TFSLIHATDF   71 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHH-HHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHH-HHHHHHHHHH
Confidence            46789999999999999999999999874  33311          0122234444443321   1111 11111  111


Q ss_pred             -------HHcCCccCccEEEEcCCcCCHH--H---------HHHHHh-hcCCCeEEEEecCHHHHHhhhh-HHHH-HH--
Q 024390          150 -------LEDGYYRGEIGFILDGLPRSRI--Q---------AEILDQ-LAEIDLVVNFKCADNFIVTNRG-GSLK-EK--  206 (268)
Q Consensus       150 -------l~~~~~~~~~g~IlDGfPr~~~--q---------a~~l~~-~~~~d~vV~Ld~~~e~l~~Rl~-~~~~-~r--  206 (268)
                             +... ...+..+|+|++|.+..  |         ...+.. ...+|++|+|++|++++.+|+. .+.. .+  
T Consensus        72 ~~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~  150 (213)
T 2plr_A           72 SDRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQE  150 (213)
T ss_dssp             HHHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTT
T ss_pred             HHHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccc
Confidence                   1110 12356799999987532  2         222222 2358999999999999999985 3210 11  


Q ss_pred             -----------H---HHHHHHchHHHHHHHh---CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          207 -----------L---EAYAELSKPLEDYYQK---QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       207 -----------l---~~y~~~~~~l~~~y~~---~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                                 +   ..|.+.   +..+|.+   ...+++||++.++++++++|.+.+...
T Consensus       151 ~g~~~~~~~d~~e~~~~~~~r---~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~  208 (213)
T 2plr_A          151 AGADIFPGLSPEEGFLKYQGL---ITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGEL  208 (213)
T ss_dssp             TTTTTCTTSCHHHHHHHHHHH---HHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhHHHHHHH---HHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                       1   233332   2233332   125788999999999999999998753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.63  E-value=1.7e-15  Score=123.41  Aligned_cols=151  Identities=17%  Similarity=0.244  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      |+|+|+|+|||||||+|+.|++++|+++++++++.+....      ..+.+.+. .|.....++...++. .+.     .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l~-~l~-----~   68 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG------LSIPQIFEKKGEAYFRKLEFEVLK-DLS-----E   68 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHSCHHHHHHHHHHHHH-HHT-----T
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC------CCHHHHHHHhChHHHHHHHHHHHH-HHh-----c
Confidence            5799999999999999999999999999999999877642      22333333 232222222223332 232     1


Q ss_pred             ccEEEEc-C--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-----H---HHHHH-HHHHHchHHHHHHHhCC
Q 024390          158 EIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-----L---KEKLE-AYAELSKPLEDYYQKQK  225 (268)
Q Consensus       158 ~~g~IlD-G--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-----~---~~rl~-~y~~~~~~l~~~y~~~~  225 (268)
                      ...+|++ |  .+....+.+.+.   .++.+|+|++|++++++|+..+     .   .+++. .|.+    ...+|.. .
T Consensus        69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~----~~~~~~~-~  140 (168)
T 2pt5_A           69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEE----RRKIYSK-A  140 (168)
T ss_dssp             SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHH----HHHHHTT-S
T ss_pred             cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHH----HHHHHHh-C
Confidence            3345554 4  223333333333   4789999999999999998431     1   11121 2221    2234544 4


Q ss_pred             cEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          226 KLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       226 ~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .++. +++.+++++.++|.+.+...
T Consensus       141 ~~~i-~~~~~~~~~~~~i~~~l~~~  164 (168)
T 2pt5_A          141 DIKV-KGEKPPEEVVKEILLSLEGN  164 (168)
T ss_dssp             SEEE-ECSSCHHHHHHHHHHHHHTS
T ss_pred             CEEE-CCCCCHHHHHHHHHHHHHhc
Confidence            4555 77799999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.63  E-value=6.2e-15  Score=128.39  Aligned_cols=168  Identities=12%  Similarity=0.076  Sum_probs=105.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc---CcccHH-HHH--------
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG---EVVSED-IIF--------  143 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G---~~ip~~-~~~--------  143 (268)
                      .+++.|+|+|++||||||+++.|++.++...+++..+.|+  +.++++|+.+++++..+   ..++.. ...        
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~  102 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ  102 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999987655553334443  46789999999998632   223322 111        


Q ss_pred             ---HHHHHHHHcCCccCccEEEEcCCc----------CC--HHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHH-
Q 024390          144 ---GLLSKRLEDGYYRGEIGFILDGLP----------RS--RIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSL-  203 (268)
Q Consensus       144 ---~ll~~~l~~~~~~~~~g~IlDGfP----------r~--~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~-  203 (268)
                         +.+...+.     .+..+|.|-|.          +.  ..+...+++    ...||++|+|++|++++++|+..+- 
T Consensus       103 ~~~~~I~paL~-----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~  177 (236)
T 3lv8_A          103 LVENVIKPALA-----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE  177 (236)
T ss_dssp             HHHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHHHHHHHHHH-----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence               12222222     35567777432          22  223333433    2579999999999999999984321 


Q ss_pred             ----HHHHHHHHHHchH-HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          204 ----KEKLEAYAELSKP-LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       204 ----~~rl~~y~~~~~~-l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                          +..-..|.+.... ..++......+++||+++++++|.++|.+.|...
T Consensus       178 ~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~  229 (236)
T 3lv8_A          178 LDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDW  229 (236)
T ss_dssp             CCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                1111123332222 2233333334899999999999999999998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.63  E-value=5.4e-15  Score=126.82  Aligned_cols=169  Identities=13%  Similarity=0.128  Sum_probs=105.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC--cccH-HHHHHHHHHHHHcC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE--VVSE-DIIFGLLSKRLEDG  153 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~--~ip~-~~~~~ll~~~l~~~  153 (268)
                      +++.|+|+|++||||||+++.|+++++...+++ ...+  .+.++++|+.+++++.+|.  .+.. ....-+..++....
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~--~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~   81 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTR--EPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL   81 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEE--SSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-cccc--CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999985433322 1112  3567899999999998874  2322 22222222222210


Q ss_pred             ------CccCccEEEEcCCcC------------CHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHH-----HHHH
Q 024390          154 ------YYRGEIGFILDGLPR------------SRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS-----LKEK  206 (268)
Q Consensus       154 ------~~~~~~g~IlDGfPr------------~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~-----~~~r  206 (268)
                            ....+..+|.|-|..            ...+...++.    ...||++|+|++|++++++|+..+     ++..
T Consensus        82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~  161 (213)
T 4edh_A           82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQE  161 (213)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTS
T ss_pred             HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccccc
Confidence                  011355677774421            1233444443    257999999999999999998321     1111


Q ss_pred             HHHHHHHch----HHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          207 LEAYAELSK----PLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       207 l~~y~~~~~----~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      -..|.+...    .+.+.|  .+.+++||+++++++|.++|.+.|...
T Consensus       162 ~~~~~~rv~~~y~~l~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4edh_A          162 DRRFFEAVRQTYLQRAAQA--PERYQVLDAGLPLAEVQAGLDRLLPNL  207 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHHC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            012222211    122222  346999999999999999999998753

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.63  E-value=1.2e-14  Score=122.98  Aligned_cols=163  Identities=14%  Similarity=0.192  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHH------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR------  149 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~------  149 (268)
                      |.|+|+|++||||||+++.|++++   |..++-+      ..+.+++.++.+++.+..+..-|.....-+...+      
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t------reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK------REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE------ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE------ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999987   5554433      2467788899999888776655543222111111      


Q ss_pred             HHcCCccCccEEEEcCCcCC------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhH--HHHHHHHHHH
Q 024390          150 LEDGYYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG--SLKEKLEAYA  211 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~--~~~~rl~~y~  211 (268)
                      +.. ....+..+|.|.|..+            ......+...    ..||++|+|++|++++.+|..+  +++.+  .|.
T Consensus        75 I~~-~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~--ef~  151 (197)
T 3hjn_A           75 IKQ-YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR--EFL  151 (197)
T ss_dssp             HHH-HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCH--HHH
T ss_pred             HHH-HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccH--HHH
Confidence            111 0123556777865322            1222233222    4699999999999999999732  11110  232


Q ss_pred             HHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          212 ELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       212 ~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +..... .+..++ .+++++|||++++++|.++|.+.+..+
T Consensus       152 ~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~r  192 (197)
T 3hjn_A          152 ERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR  192 (197)
T ss_dssp             HHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            222111 111122 346899999999999999999999754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.62  E-value=3.5e-15  Score=126.00  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHH-----------H
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG-----------L  145 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~-----------l  145 (268)
                      ++++|+|+|+|||||||+++.|+++++..++++. .+++. ..+++.+..+++.+..+..++......           .
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   85 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL   85 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999987777663 23222 124667888888887765555542221           1


Q ss_pred             HHHHHHcCCccCccEEEEcCCc-----CCHH----HHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHHHHHH--HH
Q 024390          146 LSKRLEDGYYRGEIGFILDGLP-----RSRI----QAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLKEKLE--AY  210 (268)
Q Consensus       146 l~~~l~~~~~~~~~g~IlDGfP-----r~~~----qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--~y  210 (268)
                      +...+.     .+..+|+|.+.     +...    ..+.+..+    ..+|++|+|++|++++.+|+... ..+++  .+
T Consensus        86 i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~~~~~~  159 (215)
T 1nn5_A           86 IKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HERYENGAF  159 (215)
T ss_dssp             HHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CTTCSHHH
T ss_pred             HHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccccchHHH
Confidence            222222     35678889432     1100    02223222    36899999999999999998421 11121  12


Q ss_pred             HHHchHHHHHHHh--CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          211 AELSKPLEDYYQK--QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       211 ~~~~~~l~~~y~~--~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .+........+..  ...++.||++.++++++++|.+.+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~  201 (215)
T 1nn5_A          160 QERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA  201 (215)
T ss_dssp             HHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            2222211111111  135788999999999999999988753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.62  E-value=1.2e-14  Score=120.37  Aligned_cols=155  Identities=15%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.|+|+|+|||||||+++.|++++|++++++++++++....  +    +.+.+. .|+....+....++......    
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----   74 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--D----IAWIFEMEGEAGFRRREREMIEALCKL----   74 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--C----HHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--C----hhhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence            567999999999999999999999999999999988775321  1    222222 23223333444444433222    


Q ss_pred             CccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh--hH----------HHHHHHHHHHHHchHHHHHHH
Q 024390          157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR--GG----------SLKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       157 ~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl--~~----------~~~~rl~~y~~~~~~l~~~y~  222 (268)
                       ...+|..|  .+......+.+..   .+++|+|++|.+++.+|+  ..          ...+++......   ...+|.
T Consensus        75 -~~~vi~~gg~~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~---r~~~y~  147 (185)
T 3trf_A           75 -DNIILATGGGVVLDEKNRQQISE---TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEI---RKPLYQ  147 (185)
T ss_dssp             -SSCEEECCTTGGGSHHHHHHHHH---HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHH---HHHHHH
T ss_pred             -CCcEEecCCceecCHHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH---HHHHHh
Confidence             23344444  4444444455543   248999999999999998  21          123334333333   334454


Q ss_pred             hCCcEEEEeCCC-CHHHHHHHHHHHHHhh
Q 024390          223 KQKKLLEFQVGS-APVETWQGLLTALHLQ  250 (268)
Q Consensus       223 ~~~~l~~Ida~~-s~eev~~~I~~~L~~~  250 (268)
                      .... +.||++. +++++.++|.+.+...
T Consensus       148 ~~ad-~~Idt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          148 AMAD-LVYPTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             HHCS-EEEECTTCCHHHHHHHHHHHSCC-
T ss_pred             hcCC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence            3222 4577665 8999999999988754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.62  E-value=4.2e-15  Score=121.48  Aligned_cols=150  Identities=11%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      +++|+|+|+|||||||+|+.|++++|++++++++++++..  +....    +.+. .|.....++...++. .+.     
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~----~~~~~~~~~~~~~~~~~~~~-~l~-----   69 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVA----DVVAAEGWPGFRRRESEALQ-AVA-----   69 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHH----HHHHHHHHHHHHHHHHHHHH-HHC-----
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHH----HHHHHcCHHHHHHHHHHHHH-Hhh-----
Confidence            3579999999999999999999999999999999987752  22222    2221 222222222222222 222     


Q ss_pred             CccEEEE-cC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh--HH-----------HHHHHHHHHHHchHHHHH
Q 024390          157 GEIGFIL-DG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG--GS-----------LKEKLEAYAELSKPLEDY  220 (268)
Q Consensus       157 ~~~g~Il-DG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~--~~-----------~~~rl~~y~~~~~~l~~~  220 (268)
                       ..++|+ +|  .+......+.+.   .++++|+|++|++++.+|+.  .+           ..+++..+   ......+
T Consensus        70 -~~~~vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~---~~~~~~~  142 (173)
T 1e6c_A           70 -TPNRVVATGGGMVLLEQNRQFMR---AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAV---LREREAL  142 (173)
T ss_dssp             -CSSEEEECCTTGGGSHHHHHHHH---HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHH---HHHHHHH
T ss_pred             -cCCeEEECCCcEEeCHHHHHHHH---cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHH---HHHHHHH
Confidence             234555 45  333333344443   25899999999999999985  32           12223322   2222333


Q ss_pred             HHhCCcEEEEeCC-CCHHHHHHHHHHHHH
Q 024390          221 YQKQKKLLEFQVG-SAPVETWQGLLTALH  248 (268)
Q Consensus       221 y~~~~~l~~Ida~-~s~eev~~~I~~~L~  248 (268)
                      |..  ..+.||++ .+++++.++|.+.+.
T Consensus       143 ~~~--~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          143 YQD--VAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             HHH--HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             HHh--CcEEEECCCCCHHHHHHHHHHHhc
Confidence            443  23467877 799999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.62  E-value=4.3e-15  Score=122.99  Aligned_cols=152  Identities=22%  Similarity=0.214  Sum_probs=95.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      +++|+|+|+|||||||+|+.|++++|++++++|+++++...  .+    +.+.+ ..|+....+....++...+..    
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----   71 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RS----IADIFATDGEQEFRRIEEDVVRAALAD----   71 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CC----HHHHHHHhChHHHHHHHHHHHHHHHhc----
Confidence            35699999999999999999999999999999999887642  11    22333 234444444444555443332    


Q ss_pred             CccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhC
Q 024390          157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQ  224 (268)
Q Consensus       157 ~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~  224 (268)
                       ...+|.+|  +.......+.+   . .+.+|+|+||.+++.+|+..+          ..+++..+...   ...+|...
T Consensus        72 -~~~vi~~g~~~v~~~~~~~~l---~-~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~---r~~~~~~~  143 (184)
T 2iyv_A           72 -HDGVLSLGGGAVTSPGVRAAL---A-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAK---RAPLYRRV  143 (184)
T ss_dssp             -CCSEEECCTTGGGSHHHHHHH---T-TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHH---HHHHHHHH
T ss_pred             -CCeEEecCCcEEcCHHHHHHH---c-CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHH---HHHHHhcc
Confidence             12233333  22222222222   1 578999999999999998321          23344433322   23345432


Q ss_pred             CcEEEEeCC-CCHHHHHHHHHHHHH
Q 024390          225 KKLLEFQVG-SAPVETWQGLLTALH  248 (268)
Q Consensus       225 ~~l~~Ida~-~s~eev~~~I~~~L~  248 (268)
                      . .+.||++ .++++++++|.+.+.
T Consensus       144 ~-~~~Idt~~~s~ee~~~~I~~~l~  167 (184)
T 2iyv_A          144 A-TMRVDTNRRNPGAVVRHILSRLQ  167 (184)
T ss_dssp             C-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred             C-CEEEECCCCCHHHHHHHHHHHHh
Confidence            2 3578887 799999999988775

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.62  E-value=2.4e-15  Score=123.33  Aligned_cols=157  Identities=13%  Similarity=0.042  Sum_probs=84.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH-HhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK-LLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~-~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.|+|+|+|||||||+|+.|++ .+|+.+++++ .+++.....+. +. ...+...++....+....++...+...  .
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~   76 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGG--D   76 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSC--S
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhc--c
Confidence            46799999999999999999999 6899999985 45554432111 00 000000111112334445555555321  2


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh---------HHHHHHHHHHHHHchHHHHHHHh
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      .+.++|+||++.+..+.+.+.+.    ..+..+|+|++|.+++.+|+.         +.++++++.|+...        .
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~--------~  148 (181)
T 1ly1_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL--------G  148 (181)
T ss_dssp             SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHH--------T
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccC--------C
Confidence            46789999999887776666542    234579999999999999983         34455555555431        1


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .. .+.+|++.+ +++...|...+..
T Consensus       149 ~~-~~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          149 LP-VYNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             CC-CC---------------------
T ss_pred             CC-ccccCCCCC-ceeeehhhhhhhc
Confidence            11 123776664 7888888777764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.61  E-value=4.1e-15  Score=123.06  Aligned_cols=158  Identities=9%  Similarity=0.059  Sum_probs=91.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCC-CC--hhHHHHHHHHhccCccc--HHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSP-RS--SLHKQIANAVNRGEVVS--EDIIFGLLS  147 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~-~~--~~g~~i~~~l~~G~~ip--~~~~~~ll~  147 (268)
                      +++|+|+|+|||||||+++.|+++++     +.++++++++|+.... +.  +..       ..+...+  .......+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~   75 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD-------QMRKMDPETQKRIQKMAG   75 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGG-------GGSSCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHH-------HHhcCCHHHHHHHHHHHH
Confidence            56899999999999999999999998     9999999998875321 10  000       0011111  111122222


Q ss_pred             HHHHcCCccCccEEEEcCCcCCHHHH--------HHHHhhcCCCeEEEEecCHHHHHh-hhhH--H---------HHHHH
Q 024390          148 KRLEDGYYRGEIGFILDGLPRSRIQA--------EILDQLAEIDLVVNFKCADNFIVT-NRGG--S---------LKEKL  207 (268)
Q Consensus       148 ~~l~~~~~~~~~g~IlDGfPr~~~qa--------~~l~~~~~~d~vV~Ld~~~e~l~~-Rl~~--~---------~~~rl  207 (268)
                      +.+...  ..+.+||+||.+....+.        ..+.. ..++++|+|++|++++.+ |+.+  +         +..+.
T Consensus        76 ~~i~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~  152 (192)
T 1kht_A           76 RKIAEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-LNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQ  152 (192)
T ss_dssp             HHHHHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHH-HCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHH
T ss_pred             HHHHhh--ccCCeEEEccceeccccccccccCcHHHHhc-cCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHH
Confidence            323221  124579999975421110        12222 257899999999999996 7732  1         11111


Q ss_pred             HHHHHHchHHHHHHHhCCcEEEE-eCCCCHHHHHHHHHHHH
Q 024390          208 EAYAELSKPLEDYYQKQKKLLEF-QVGSAPVETWQGLLTAL  247 (268)
Q Consensus       208 ~~y~~~~~~l~~~y~~~~~l~~I-da~~s~eev~~~I~~~L  247 (268)
                       ............|.. ..++.| +.+.++++++++|.+.|
T Consensus       153 -~~~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          153 -FMNRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             -HHHHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence             122222222333332 334555 44566999999998876

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.61  E-value=7.3e-15  Score=120.01  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=92.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ...+|+|+|+|||||||+|+.|++++|++++++++++++...      ..+.+.+. .|+....+...+++......   
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~l~~~~~~---   76 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG------LSVREIFEELGEDNFRMFEKNLIDELKTL---   76 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC------CCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            456799999999999999999999999999999999987642      22334443 25443434444444443321   


Q ss_pred             cCccE-EEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-HHH-----HHHHHHHchHHHHHHHhCCc
Q 024390          156 RGEIG-FILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEK-----LEAYAELSKPLEDYYQKQKK  226 (268)
Q Consensus       156 ~~~~g-~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-~~r-----l~~y~~~~~~l~~~y~~~~~  226 (268)
                        ... +|..|  ++.. ..      +..++.+|+|++|++++++|+..+. ..|     .+...+.......+|.... 
T Consensus        77 --~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a-  146 (168)
T 1zuh_A           77 --KTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNA-  146 (168)
T ss_dssp             --SSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTC-
T ss_pred             --CCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHC-
Confidence              222 33322  4433 11      2357899999999999999984331 001     1122222222334454422 


Q ss_pred             EEEEeCCCCHHHHHHHHHHHH
Q 024390          227 LLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       227 l~~Ida~~s~eev~~~I~~~L  247 (268)
                      .+.||++.++++++++|.+.|
T Consensus       147 ~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          147 SFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             SEEEEGGGCHHHHHHHHHHC-
T ss_pred             CEEEECCCCHHHHHHHHHHHh
Confidence            245677679999999998765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.60  E-value=3.3e-15  Score=122.99  Aligned_cols=154  Identities=10%  Similarity=0.102  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      ++|+|+|+|||||||+|+.|++++|+++++++++++....      ..+.+.+. .|...+.+....++.. +..     
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~~~-l~~-----   72 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN------QKVSEIFEQKRENFFREQEQKMADF-FSS-----   72 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT------SCHHHHHHHHCHHHHHHHHHHHHHH-HTT-----
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC------CCHHHHHHHcCHHHHHHHHHHHHHH-HHc-----
Confidence            4699999999999999999999999999999999877532      11222222 2433333333344432 321     


Q ss_pred             ccEEEEc-CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-HHH-----HHHHHHHchHHHHHHHhCCcEEEE
Q 024390          158 EIGFILD-GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEK-----LEAYAELSKPLEDYYQKQKKLLEF  230 (268)
Q Consensus       158 ~~g~IlD-GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-~~r-----l~~y~~~~~~l~~~y~~~~~l~~I  230 (268)
                      ...+|++ |.+.... ..    +...+.+|+|++|.+++.+|+..+. ..|     .+.+.+.......+|... ..+.|
T Consensus        73 ~~~~vi~~g~~~~~~-~~----l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~-~~~~I  146 (175)
T 1via_A           73 CEKACIATGGGFVNV-SN----LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQK-ANFIL  146 (175)
T ss_dssp             CCSEEEECCTTGGGS-TT----GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHH-CSEEE
T ss_pred             cCCEEEECCCCEehh-hH----HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhc-CCEEE
Confidence            2345555 5432211 11    2245789999999999999984331 011     222333333344556432 24678


Q ss_pred             eCC-CCHHHHHHHHHHHHHhh
Q 024390          231 QVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       231 da~-~s~eev~~~I~~~L~~~  250 (268)
                      |++ .+++++++.|.+.+...
T Consensus       147 dt~~~~~eev~~~I~~~l~~~  167 (175)
T 1via_A          147 NIENKNIDELLSEIKKVIKEG  167 (175)
T ss_dssp             ECTTCCHHHHHHHHHHHHC--
T ss_pred             ECCCCCHHHHHHHHHHHHHhc
Confidence            887 79999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.60  E-value=1.6e-14  Score=117.56  Aligned_cols=144  Identities=17%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      +.|+|+|+|||||||+++.|++++|+.+++.+.+......        +...+..            . ..+.     .+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~--------~~~~~~~------------~-~~l~-----~~   55 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG--------NEKLFEH------------F-NKLA-----DE   55 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC--------HHHHHHH------------H-HHHT-----TC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH--------HHHHHHH------------H-HHHH-----hC
Confidence            4799999999999999999999999999999877655420        0111110            0 0111     12


Q ss_pred             cEEEEcCC---------------cCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHchHH
Q 024390          159 IGFILDGL---------------PRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSKPL  217 (268)
Q Consensus       159 ~g~IlDGf---------------Pr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l  217 (268)
                      ..+|.|.+               .....+...+... ..|+++|+|++|++++.+|+..+-     .+.++...+....+
T Consensus        56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~  135 (173)
T 3kb2_A           56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREV  135 (173)
T ss_dssp             CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence            23333311               1123344444433 578999999999999999984321     01111111111222


Q ss_pred             HHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          218 EDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      ...|.  ...+.||++ .++++++++|.+.+...
T Consensus       136 ~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~  167 (173)
T 3kb2_A          136 MSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE  167 (173)
T ss_dssp             HHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred             HhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            22232  357789988 59999999999998863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.60  E-value=7.3e-15  Score=121.94  Aligned_cols=164  Identities=10%  Similarity=0.092  Sum_probs=89.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .+++.|+|+|+|||||||+++.|++++|+++++.+++...........+......+..   .-.+.+...+...+.    
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~----   75 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ----   75 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh----
Confidence            3578899999999999999999999999999999765433211000000000000000   000111122233332    


Q ss_pred             cCccEEEEcCCcCCHHHHHHH---Hh-hcCCCeEEEEecCHHHHHhhhhHHHH--HHH-----HHHHHHchHHHHHHHh-
Q 024390          156 RGEIGFILDGLPRSRIQAEIL---DQ-LAEIDLVVNFKCADNFIVTNRGGSLK--EKL-----EAYAELSKPLEDYYQK-  223 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l---~~-~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl-----~~y~~~~~~l~~~y~~-  223 (268)
                       .+.++|+|+++....+...+   .. ...++++|+|++|++++.+|+..+-.  +|.     ..|... ..+...|.. 
T Consensus        76 -~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~-~~~~~~~~~~  153 (193)
T 2rhm_A           76 -SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPAD-LELVRSRGDI  153 (193)
T ss_dssp             -TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHH-HHHHHHSCCC
T ss_pred             -CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcc-hhhHHHHhcC
Confidence             35689999987322222222   22 23577999999999999999955432  121     112110 012222321 


Q ss_pred             -----CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          224 -----QKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       224 -----~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                           ....+.||++...+++.++|.+.|.
T Consensus       154 ~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~  183 (193)
T 2rhm_A          154 PPLPLGGPLLTVDTTFPEQIDMNAIVQWVR  183 (193)
T ss_dssp             CCCCCCSCEEEEECSSGGGCCHHHHHHHHH
T ss_pred             CCccCCCCEEEEeCCCCcccCHHHHHHHHH
Confidence                 1357889988754444444444443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.57  E-value=2e-14  Score=126.18  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=105.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      +..|+|+|++||||||+++.|++.+|+.+++++++++.... +..    +.+.+. .|+....+...+++.......   
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~~---  119 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKETEALKKLSLMY---  119 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence            66799999999999999999999999999999999988652 222    334333 255555555555555544331   


Q ss_pred             CccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HHH---------HHHHHHHHchHHH
Q 024390          157 GEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKE---------KLEAYAELSKPLE  218 (268)
Q Consensus       157 ~~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~---------rl~~y~~~~~~l~  218 (268)
                       ..++|.+  |.+....+...+.    .+++|||++|.+++.+|+...       ...         ..+.+.+......
T Consensus       120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~  194 (250)
T 3nwj_A          120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARG  194 (250)
T ss_dssp             -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHH
Confidence             2345544  4666555555553    378999999999999998421       000         0122333333344


Q ss_pred             HHHHhCCcEEEE----------eC-CCCHHHHHHHHHHHHHhh
Q 024390          219 DYYQKQKKLLEF----------QV-GSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       219 ~~y~~~~~l~~I----------da-~~s~eev~~~I~~~L~~~  250 (268)
                      ..|...+.++.+          |+ +.+++++.++|.+.+...
T Consensus       195 ~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~  237 (250)
T 3nwj_A          195 EAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY  237 (250)
T ss_dssp             HHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            557655545433          54 579999999999998764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.56  E-value=2.7e-14  Score=118.80  Aligned_cols=154  Identities=12%  Similarity=0.201  Sum_probs=92.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH-hCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc---cHHHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV---SEDIIFGLLSKRLE  151 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~-l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i---p~~~~~~ll~~~l~  151 (268)
                      .++++|+|+|+|||||||+++.|++. +|++++++|+++++... ....++.    +.. ..+   +++...+.+...+.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~   81 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV   81 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence            46788999999999999999999999 89999999999988511 1112221    111 112   33344444544432


Q ss_pred             cCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHHHHH-H-HHHHchHHHHHHHh
Q 024390          152 DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKLE-A-YAELSKPLEDYYQK  223 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~rl~-~-y~~~~~~l~~~y~~  223 (268)
                      .     ..++|+|+....     .++. ..++.+|+|++|.+++++|+..+      +..++. + +..........|. 
T Consensus        82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-  149 (184)
T 1y63_A           82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-  149 (184)
T ss_dssp             S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-
T ss_pred             c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-
Confidence            1     357888865321     1211 23689999999999999998432      222221 1 1111223344454 


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      ...++.+| +.+++++.+++.+++.
T Consensus       150 ~~~vi~~n-~~~~~~~~~~v~~i~~  173 (184)
T 1y63_A          150 DDIVLVRE-NDTLEQMAATVEEIRE  173 (184)
T ss_dssp             GGGEEEEE-CSSHHHHHHHHHHHHH
T ss_pred             cCcEEECC-CCCHHHHHHHHHHHHH
Confidence            23455555 6789999555555543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.56  E-value=5.9e-14  Score=119.40  Aligned_cols=158  Identities=14%  Similarity=0.110  Sum_probs=96.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc------cCcccHHH---------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSEDI---------  141 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~------G~~ip~~~---------  141 (268)
                      ++++|+|+|++||||||+++.|++ +|++++++|++++....++......+.+.+..      |. +....         
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~-~~~~~l~~~~f~~~   80 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGT-LQRRALRERIFANP   80 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSC-BCHHHHHHHHHTCH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCC-CCHHHHHHHHhCCH
Confidence            467899999999999999999998 99999999999988665544444444444321      11 11111         


Q ss_pred             ---------HHHHHHHH----HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------
Q 024390          142 ---------IFGLLSKR----LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------  202 (268)
Q Consensus       142 ---------~~~ll~~~----l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------  202 (268)
                               +...+...    +...   .+..+|+| .|......  +  ...+|.+|+|++|++++++|+..+      
T Consensus        81 ~~~~~l~~~~~p~v~~~~~~~~~~~---~~~~vi~~-~~~l~~~~--~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~  152 (218)
T 1vht_A           81 EEKNWLNALLHPLIQQETQHQIQQA---TSPYVLWV-VPLLVENS--L--YKKANRVLVVDVSPETQLKRTMQRDDVTRE  152 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CSSEEEEE-CTTTTTTT--G--GGGCSEEEEEECCHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHhHCHHHHHHHHHHHHhc---CCCEEEEE-eeeeeccC--c--cccCCEEEEEECCHHHHHHHHHHcCCCCHH
Confidence                     11111111    1111   22334444 45432221  1  135789999999999999998432      


Q ss_pred             -HHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          203 -LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       203 -~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       +.+++   ..+ .+...++...+  +.||++.+++++.++|.+.+...
T Consensus       153 ~~~~~~---~~~-~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~~  195 (218)
T 1vht_A          153 HVEQIL---AAQ-ATREARLAVAD--DVIDNNGAPDAIASDVARLHAHY  195 (218)
T ss_dssp             HHHHHH---HHS-CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHH
T ss_pred             HHHHHH---Hhc-CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence             12222   222 12233333333  56788889999999999988643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.55  E-value=2.1e-13  Score=114.89  Aligned_cols=156  Identities=11%  Similarity=0.127  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc-----cc---------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS---------------  138 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-----ip---------------  138 (268)
                      ++|.|+|++||||||+++.|++ +|++++++|++.++...++......+.+.+.....     +.               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5799999999999999999998 99999999999887654443322222222211000     00               


Q ss_pred             ---HHHHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HH
Q 024390          139 ---EDIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LK  204 (268)
Q Consensus       139 ---~~~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~  204 (268)
                         +.+....+    .+.+...   .+.++|+|+ |..... . +  ...+|.+|+|++|++++.+|+..+       +.
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~-~-~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~  153 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIEN-K-L--TALCDRILVVDVSPQTQLARSAQRDNNNFEQIQ  153 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTT-T-C--GGGCSEEEEEECCHHHHHHHHC-----CHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhc-C-c--HhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence               11111111    1222221   245788887 432111 1 1  124689999999999999999432       23


Q ss_pred             HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHH----HHHHHHHHHHHh
Q 024390          205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPV----ETWQGLLTALHL  249 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~e----ev~~~I~~~L~~  249 (268)
                      +|+.   .+ .+..+.|...+  +.||++.+++    ++.++|.+.+..
T Consensus       154 ~r~~---~q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~  196 (206)
T 1jjv_A          154 RIMN---SQ-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQF  196 (206)
T ss_dssp             HHHH---HS-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---hc-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHH
Confidence            3332   22 23444555444  4678777999    999999988864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.55  E-value=1.8e-14  Score=123.82  Aligned_cols=168  Identities=13%  Similarity=0.066  Sum_probs=104.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-cccH-HHHHHHHHHHHHcC-
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-VVSE-DIIFGLLSKRLEDG-  153 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-~ip~-~~~~~ll~~~l~~~-  153 (268)
                      +++.|+|.|++||||||+++.|+++++...    .++++. ..++++|+.+++++..+. .... ....-...+|.+.. 
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999998622    233332 347899999999988654 2322 11111122222200 


Q ss_pred             ----CccCccEEEEcCCcCCHH--H---------HHHHHhh----cCCCeEEEE-ecCHHHHHhhhh---HHHHHHHHHH
Q 024390          154 ----YYRGEIGFILDGLPRSRI--Q---------AEILDQL----AEIDLVVNF-KCADNFIVTNRG---GSLKEKLEAY  210 (268)
Q Consensus       154 ----~~~~~~g~IlDGfPr~~~--q---------a~~l~~~----~~~d~vV~L-d~~~e~l~~Rl~---~~~~~rl~~y  210 (268)
                          ....+..+|.|-|..+..  |         .+++.++    ..||++|+| ++|++++.+|+.   ++++.  ..|
T Consensus        79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~--~~f  156 (216)
T 3tmk_A           79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYET--VKF  156 (216)
T ss_dssp             HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCC--HHH
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccH--HHH
Confidence                011355677786543211  2         1233332    479999999 999999999973   11111  123


Q ss_pred             HHHchHH-HHHHH-----hCCcEEEEe-CCCCHHHHHHHHHHHHHhhc
Q 024390          211 AELSKPL-EDYYQ-----KQKKLLEFQ-VGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       211 ~~~~~~l-~~~y~-----~~~~l~~Id-a~~s~eev~~~I~~~L~~~~  251 (268)
                      .+..... .+++.     ..+.+++|| +++++++|.++|.+.|....
T Consensus       157 ~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l  204 (216)
T 3tmk_A          157 QEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL  204 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            2222211 11111     235799999 89999999999999998654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.54  E-value=1.3e-13  Score=113.45  Aligned_cols=153  Identities=8%  Similarity=-0.070  Sum_probs=86.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc-chhHHHHhhcCCCChhHHHHHHHHhccCcc------cHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI-SMSSIVRQDLSPRSSLHKQIANAVNRGEVV------SEDIIFGLLSK  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i-s~~dlir~~~~~~~~~g~~i~~~l~~G~~i------p~~~~~~ll~~  148 (268)
                      .+++.|+|+|+|||||||+|+.|++++|.+++ +.           ...+..+++.+..|...      ..+.+.+.+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~-----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~   71 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP-----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQY   71 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEECCT-----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch-----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence            46789999999999999999999999999988 32           11222233322222111      01233445555


Q ss_pred             HHHcCCccCccEEEEcCCcCCHHHH----HHHHhhcCCCeEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHchHHHH
Q 024390          149 RLEDGYYRGEIGFILDGLPRSRIQA----EILDQLAEIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSKPLED  219 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr~~~qa----~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~~  219 (268)
                      .+..    .+..+|+|+........    +.+.....+-.+|+|+||++++.+|+..+-     .++++.+.+...++ .
T Consensus        72 ~l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~  146 (183)
T 2vli_A           72 ASRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-Q  146 (183)
T ss_dssp             HHHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-G
T ss_pred             HHHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-c
Confidence            5543    24557888765444322    222222222356999999999999984331     12233222222222 1


Q ss_pred             HHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          220 YYQKQKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       220 ~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                          .. + .||++ .++++++++|.+.+...
T Consensus       147 ----~~-~-~Id~~~~~~~~~~~~I~~~l~~~  172 (183)
T 2vli_A          147 ----FQ-T-HIDTAGLGTQQVAEQIAAQVGLT  172 (183)
T ss_dssp             ----GC-S-EEECTTCCHHHHHHHHHHHHTCC
T ss_pred             ----cc-e-EeeCCCCCHHHHHHHHHHHHHHh
Confidence                12 3 78987 89999999999999753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.54  E-value=5.5e-14  Score=121.37  Aligned_cols=168  Identities=13%  Similarity=0.033  Sum_probs=94.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHH-hhcCCCChhHHHHHHHHhccCcccHHHH-HHHHHHHHHc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVR-QDLSPRSSLHKQIANAVNRGEVVSEDII-FGLLSKRLED  152 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir-~~~~~~~~~g~~i~~~l~~G~~ip~~~~-~~ll~~~l~~  152 (268)
                      .+++.|+|+|++||||||+++.|+++++. ..+++   +. ...+.++++++.+++++........... .-+..+|.+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v---~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~   95 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN---VVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH   95 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG---EEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee---eEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999999998764 32222   11 2235678899999998875322333221 1122222221


Q ss_pred             C------CccCccEEEEcCCcCC------------HHHHHHHHhh---cCCCeEEEEecCHHHHHhhhhHHHHHHHH---
Q 024390          153 G------YYRGEIGFILDGLPRS------------RIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSLKEKLE---  208 (268)
Q Consensus       153 ~------~~~~~~g~IlDGfPr~------------~~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~---  208 (268)
                      .      ....+..+|.|-|..+            ..+...++++   ..||++|+|++|++++++|+ .  ..|++   
T Consensus        96 ~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~--rdr~E~~~  172 (223)
T 3ld9_A           96 FVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-C--KNGYEFAD  172 (223)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------------C
T ss_pred             HHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-c--cCccccch
Confidence            1      0113456777855321            2233333332   37999999999999999998 1  22222   


Q ss_pred             -HHHHHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          209 -AYAELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       209 -~y~~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                       .|.+..... .++... .+.+++||+++++++| ++|.+.|...
T Consensus       173 ~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~  216 (223)
T 3ld9_A          173 MEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEV  216 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence             233333221 122222 2468999999999999 9999988754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.54  E-value=3.8e-14  Score=124.54  Aligned_cols=157  Identities=13%  Similarity=0.103  Sum_probs=95.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH---hCCCcc--chhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL---LEVPRI--SMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~---l~~~~i--s~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~  151 (268)
                      +++.|+|+|+|||||||+|+.|++.   +|+.++  +.++ ++..+..-..          .++..........+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~----------~~e~~~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKE----------KYEEFIKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCG----------GGHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhH----------HHHHHHHHHHHHHHHHHhh
Confidence            5678999999999999999999998   788877  7654 4444322111          1111111222233433332


Q ss_pred             cCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHH----HHHHHHHHHHchHHHHHHHh
Q 024390          152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL----KEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~----~~rl~~y~~~~~~l~~~y~~  223 (268)
                           . ..+|+|+.+....+.+.+...    ..++++|+|+||.+++.+|+..+-    .+.++...+........|.-
T Consensus        72 -----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~  145 (260)
T 3a4m_A           72 -----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKW  145 (260)
T ss_dssp             -----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGG
T ss_pred             -----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCC
Confidence                 3 689999987766655555432    457899999999999999984321    01111111110000011110


Q ss_pred             CCcEEEEeCCC--CHHHHHHHHHHHHHhh
Q 024390          224 QKKLLEFQVGS--APVETWQGLLTALHLQ  250 (268)
Q Consensus       224 ~~~l~~Ida~~--s~eev~~~I~~~L~~~  250 (268)
                      ....+.||++.  +++++++.|.+.+...
T Consensus       146 ~~~~~~Id~~~~~~~~ei~~~I~~~l~~~  174 (260)
T 3a4m_A          146 DEPFLIIDTTKDIDFNEIAKKLIEKSKEI  174 (260)
T ss_dssp             GCCSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence            12457889876  8999999999988754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.53  E-value=9.9e-14  Score=118.24  Aligned_cols=167  Identities=14%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCChhH--HHHHHHHh-----------------cc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSSLH--KQIANAVN-----------------RG  134 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~~~g--~~i~~~l~-----------------~G  134 (268)
                      +++|.|+|++||||||+++.|++.+|++++++|++++....    .+.++.  ..+.+...                 .|
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            46899999999999999999999999999999999986421    122111  11222211                 23


Q ss_pred             CcccHHHHH-------------HHHHHHHHcC--CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          135 EVVSEDIIF-------------GLLSKRLEDG--YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       135 ~~ip~~~~~-------------~ll~~~l~~~--~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ..+++.+..             ..+.+.+...  ....+.++|+||....  +.    .+..+|++|+|+++.+++.+|.
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~~----~~~~~d~~i~l~~~~e~~~~R~  158 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--TV----VFPDAPVKIFLDASSEERAHRR  158 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--CC----CCTTCSEEEEEECCHHHHHHHH
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--ce----EecCCCEEEEEeCCHHHHHHHH
Confidence            322222110             1233322211  0124678999997321  10    1236899999999999999995


Q ss_pred             hHHHHHHHH--HHHHHchHHH-----HHH---Hh---CCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          200 GGSLKEKLE--AYAELSKPLE-----DYY---QK---QKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       200 ~~~~~~rl~--~y~~~~~~l~-----~~y---~~---~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      ...+.+|-.  .+.+....+.     ++.   ..   ....+.||++ .++++++++|.+.+...
T Consensus       159 ~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~  223 (227)
T 1cke_A          159 MLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK  223 (227)
T ss_dssp             HHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            332222200  0111111110     111   11   1123688988 79999999999998654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.53  E-value=2.1e-13  Score=113.85  Aligned_cols=161  Identities=10%  Similarity=0.039  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-ccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-~~~  157 (268)
                      |+|+|+|+|||||||+++.|+++++..++....       .+..+   +..+...+...+.......+..++.... ...
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence            479999999999999999999999986654210       00000   1111111111111111122222222110 011


Q ss_pred             ccEEEEcCCcCCHH--HH-----------------HHHH----hh-------cCCCeEEEEecCHHHHHhhhhHHH---H
Q 024390          158 EIGFILDGLPRSRI--QA-----------------EILD----QL-------AEIDLVVNFKCADNFIVTNRGGSL---K  204 (268)
Q Consensus       158 ~~g~IlDGfPr~~~--qa-----------------~~l~----~~-------~~~d~vV~Ld~~~e~l~~Rl~~~~---~  204 (268)
                      ..++|+|+++.+..  +.                 ..+.    .+       ..+|++|+|++|++++++|+.++-   .
T Consensus        71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~  150 (205)
T 2jaq_A           71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEE  150 (205)
T ss_dssp             --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHH
T ss_pred             cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhh
Confidence            23499998876421  11                 1111    11       358999999999999999984321   1


Q ss_pred             -----HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          205 -----EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       205 -----~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                           ...+...+....+.+.|......+.||++.++++++++|.+.+..
T Consensus       151 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~  200 (205)
T 2jaq_A          151 LLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS  200 (205)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence                 011111222222344453234678899999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.52  E-value=1.4e-13  Score=122.46  Aligned_cols=166  Identities=11%  Similarity=0.049  Sum_probs=101.5

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc------cCcccHH-------
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSED-------  140 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~------G~~ip~~-------  140 (268)
                      .|.++++|+|+|+|||||||+|+.|+ .+|+++|++|++.++...++......+.+.+..      |. +...       
T Consensus        71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~-idr~~l~~~vf  148 (281)
T 2f6r_A           71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGT-INRKVLGSRVF  148 (281)
T ss_dssp             SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSS-BCHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCC-cCHHHHHHHHh
Confidence            34567899999999999999999999 689999999999888766655544444433321      11 1110       


Q ss_pred             -----------HHH----HHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH--
Q 024390          141 -----------IIF----GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL--  203 (268)
Q Consensus       141 -----------~~~----~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~--  203 (268)
                                 ++.    ..+.+++..........+|+||......   .+.  ..+|.+|+|++|++++++|+..+-  
T Consensus       149 ~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~--~~~d~vI~l~a~~ev~~~Rl~~R~g~  223 (281)
T 2f6r_A          149 GNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ--SMVHEVWTVVIPETEAVRRIVERDGL  223 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG--GGCSEEEEEECCHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH--HhCCEEEEEcCCHHHHHHHHHHcCCC
Confidence                       111    1112222211001245789999632111   011  247899999999999999984321  


Q ss_pred             --HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          204 --KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       204 --~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                        ++-...+..+ .+...++...+  +.||++.+++++.++|.+++..
T Consensus       224 s~e~~~~ri~~q-~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~  268 (281)
T 2f6r_A          224 SEAAAQSRLQSQ-MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNL  268 (281)
T ss_dssp             CHHHHHHHHHTS-CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHc-CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence              1111122222 22334443333  4578888999999999998864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.51  E-value=5.7e-14  Score=118.28  Aligned_cols=158  Identities=11%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~~  149 (268)
                      .+..|+|+|++||||||+++.|+..+|..+++.+++.+...         . .....|....+.       .+...+...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~   97 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLRSLAEWMDAR   97 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence            56789999999999999999999999999999877642210         0 011122222211       111222222


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHhCCcE
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQKQKKL  227 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l  227 (268)
                      +.     .+..+|+|.......+.+.+.+......+|+|+||.+++.+|+..+-.  ...+.+..+.......|.+ ...
T Consensus        98 ~~-----~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~-~~~  171 (200)
T 4eun_A           98 AD-----AGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPD-ESG  171 (200)
T ss_dssp             HH-----TTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTT-SCE
T ss_pred             Hh-----cCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCC-CCe
Confidence            22     245677776444555555555554556899999999999999832210  0011122222211222322 246


Q ss_pred             EEEeCCCCHHHHHHHHHHHHHhh
Q 024390          228 LEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       228 ~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +.||++.+++++.++|.+.|...
T Consensus       172 ~~Id~~~~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          172 IVLDLRQPPEQLIERALTWLDIA  194 (200)
T ss_dssp             EEEETTSCHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCHHHHHHHHHHHHHhc
Confidence            78998899999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.50  E-value=2.1e-13  Score=111.33  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=90.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .+++|+|+|+|||||||+++.|++.++.++++.++++++...  ..++.    .++ .|+....+....++.. +..   
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~----i~~~~g~~~~~~~~~~~l~~-l~~---   72 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGW----VFDLEGEEGFRDREEKVINE-LTE---   72 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHH----HHHHHHHHHHHHHHHHHHHH-HHT---
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHH----HHHHHhHHHHHHHHHHHHHH-HHh---
Confidence            346799999999999999999999999999999988876432  12221    111 1222212212233332 221   


Q ss_pred             cCccEEEEc---CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-----------HHHHHHHHHHchHHHHHH
Q 024390          156 RGEIGFILD---GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-----------KEKLEAYAELSKPLEDYY  221 (268)
Q Consensus       156 ~~~~g~IlD---GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-----------~~rl~~y~~~~~~l~~~y  221 (268)
                        ..++++.   |.+......+.+..   .+++++|+++++++.+|+..+-           .+++..   +......+|
T Consensus        73 --~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~---~~~~r~~~~  144 (173)
T 1kag_A           73 --KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEA---LANERNPLY  144 (173)
T ss_dssp             --SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHH---HHHHHHHHH
T ss_pred             --CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHH---HHHHHHHHH
Confidence              2344443   44444444444443   4689999999999999984421           222322   222223445


Q ss_pred             HhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          222 QKQKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       222 ~~~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                      .... .+.||++ .++++++++|.+.+..
T Consensus       145 ~~~a-~~~id~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          145 EEIA-DVTIRTDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             HHHC-SEEC-----CHHHHHHHHHHHHC-
T ss_pred             HhhC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence            4333 3567876 7999999999988753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.50  E-value=1e-12  Score=107.73  Aligned_cols=152  Identities=9%  Similarity=0.078  Sum_probs=91.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~~  149 (268)
                      .+..|+|+|++||||||+++.|++.+|..+++.+++.+..         .+.. ...|..+.+.       .+..++...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~   76 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAM   76 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998764210         0000 0112211110       111222222


Q ss_pred             HHcCCccCccEEEEc-CCcCCHHHHHHHHhhcCCC-eEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHchHHHHH-H
Q 024390          150 LEDGYYRGEIGFILD-GLPRSRIQAEILDQLAEID-LVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSKPLEDY-Y  221 (268)
Q Consensus       150 l~~~~~~~~~g~IlD-GfPr~~~qa~~l~~~~~~d-~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~~~-y  221 (268)
                      +.     .+.++|+| |++. ..+.+.+.+.. ++ .+|+|+||.+++.+|+..+-     ...+.   .+...+... |
T Consensus        77 ~~-----~~~~~vi~~~~~~-~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~---~~~~~~~~~~~  146 (175)
T 1knq_A           77 QR-----TNKVSLIVCSALK-KHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLV---TQFETLQEPGA  146 (175)
T ss_dssp             HH-----HCSEEEEECCCCS-HHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHH---HHHHHCCCCCT
T ss_pred             Hh-----cCCcEEEEeCchH-HHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCCCCchHHHH---HHHHhhhCccc
Confidence            22     24578887 5543 33444554432 45 79999999999999984321     11121   111111111 2


Q ss_pred             HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          222 QKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .. ...+.||++.+++++.++|.+.+..
T Consensus       147 ~~-~~~~~Id~~~~~~~~~~~i~~~l~~  173 (175)
T 1knq_A          147 DE-TDVLVVDIDQPLEGVVASTIEVIKK  173 (175)
T ss_dssp             TC-TTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             CC-CCeEEEeCCCCHHHHHHHHHHHHhc
Confidence            22 2467899889999999999998863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.49  E-value=1.4e-13  Score=115.72  Aligned_cols=159  Identities=9%  Similarity=0.098  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccHHH------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSEDI------------  141 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~~~------------  141 (268)
                      ++|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+...     ..+....            
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999999 999999999999887654443333343332110     0111111            


Q ss_pred             ------HHHH----HHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHH
Q 024390          142 ------IFGL----LSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKE  205 (268)
Q Consensus       142 ------~~~l----l~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~  205 (268)
                            ....    +.+.+...  .....+|+||.-.....   +.  ..+|.+|+|++|++++.+|+..+      +.+
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~  153 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRGMSEEDFER  153 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcCCCHHHHHH
Confidence                  1111    11122211  11257888874211110   11  24789999999999999998432      222


Q ss_pred             HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          206 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      |+.   .+. +...++...+  +.||++.+++++.++|.+.+....
T Consensus       154 ~~~---~~~-~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          154 RWK---KQM-PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             HHT---TSC-CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHH---hCC-ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHHh
Confidence            222   221 2233333333  468888899999999999987544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.48  E-value=3.6e-14  Score=126.36  Aligned_cols=131  Identities=14%  Similarity=0.088  Sum_probs=84.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.|+|+|+|||||||+++.|++++ |+.+|++| .+|..+..... +.. ..+...++..+.+.+..++...+...  .
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence            3679999999999999999999985 99999998 55554432111 000 00001111112233344444444221  2


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh---------HHHHHHHHHHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAEL  213 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~---------~~~~~rl~~y~~~  213 (268)
                      .+.++|+||++.+..+.+.+.+.    ..+..+|+|++|.+++.+|+.         +.++++++.|+..
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~  146 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREY  146 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhcc
Confidence            46789999999887776666543    234589999999999999982         3456666666544

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.48  E-value=1.9e-13  Score=112.76  Aligned_cols=153  Identities=13%  Similarity=0.188  Sum_probs=90.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      +++.|+|+|+|||||||+++.|++.+|+.++++++++++.... ...+..     .......++.+...+...+..    
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----   79 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE----   79 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence            4567999999999999999999999999999999998875110 000000     001122344444555544442    


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH------HHHH--HHHHHHchHHHHHHHhCCcEE
Q 024390          157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL------KEKL--EAYAELSKPLEDYYQKQKKLL  228 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~------~~rl--~~y~~~~~~l~~~y~~~~~l~  228 (268)
                        .++|+|+.....     +.. ..++.+|+|++|.+++.+|+.++-      ..+.  +.+..........|. .+.++
T Consensus        80 --g~~vv~~~~~~~-----~~~-~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~i  150 (180)
T 3iij_A           80 --GGVIVDYHGCDF-----FPE-RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIVH  150 (180)
T ss_dssp             --CCEEEECSCCTT-----SCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEE
T ss_pred             --CCEEEEechhhh-----cch-hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEE
Confidence              366777543211     100 127899999999999999984321      1111  111112222333343 24555


Q ss_pred             EEeCCCCHHHH---HHHHHHHHHh
Q 024390          229 EFQVGSAPVET---WQGLLTALHL  249 (268)
Q Consensus       229 ~Ida~~s~eev---~~~I~~~L~~  249 (268)
                      .++ +.+++++   ..+|.+.|..
T Consensus       151 ~~~-~~~~~ev~~~v~~i~~~l~~  173 (180)
T 3iij_A          151 QLP-SNKPEELENNVDQILKWIEQ  173 (180)
T ss_dssp             EEE-CSSHHHHHHHHHHHHHHHHH
T ss_pred             EcC-CCCHHHHHHHHHHHHHHHHH
Confidence            555 6899999   5555555543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.45  E-value=3e-13  Score=114.78  Aligned_cols=163  Identities=13%  Similarity=0.053  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGLLSK  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~------~~~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~~~~~ll~~  148 (268)
                      .+++.|+|+|+|||||||+++.|++.++      +.+++. +.++..+.....+. ..-.+.+       . .+...+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~~l~~~~~~~~~~r~~~~-------~-~~~~~~~~   93 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI-------R-RIAEVAKL   93 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH-------H-HHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhhhhccccCCCHHHHHHHH-------H-HHHHHHHH
Confidence            3578899999999999999999999886      777775 44554432211110 0000000       0 11122233


Q ss_pred             HHHcCCccCccEEEEcCCcCC-HHHHHHHHhh----------cCCCeEEEEecCHHHHHhhhhHHHHHH-HHHHHHHchH
Q 024390          149 RLEDGYYRGEIGFILDGLPRS-RIQAEILDQL----------AEIDLVVNFKCADNFIVTNRGGSLKEK-LEAYAELSKP  216 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr~-~~qa~~l~~~----------~~~d~vV~Ld~~~e~l~~Rl~~~~~~r-l~~y~~~~~~  216 (268)
                      .+.     .+..+|+| ++.. ....+.+.++          ..|+++|+|+||++++.+|+...+..+ -+.|......
T Consensus        94 ~l~-----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~  167 (211)
T 1m7g_A           94 FAD-----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTG  167 (211)
T ss_dssp             HHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBT
T ss_pred             HHH-----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhh
Confidence            333     24678888 4431 1223333321          246899999999999999962211111 1122222223


Q ss_pred             HHHHHHhC-CcEEEEeCCC-CHHHHHHHHHHHHHhhccc
Q 024390          217 LEDYYQKQ-KKLLEFQVGS-APVETWQGLLTALHLQHIN  253 (268)
Q Consensus       217 l~~~y~~~-~~l~~Ida~~-s~eev~~~I~~~L~~~~~~  253 (268)
                      +..+|... ...+.||++. ++++++++|.+.+...++.
T Consensus       168 ~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~~~~  206 (211)
T 1m7g_A          168 ISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYL  206 (211)
T ss_dssp             TTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTCS
T ss_pred             hhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            33345421 2247899987 9999999999999876544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.44  E-value=1.1e-12  Score=110.01  Aligned_cols=159  Identities=13%  Similarity=0.093  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCChh--HHHHHHHH-----------------hccCc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSSL--HKQIANAV-----------------NRGEV  136 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~~~--g~~i~~~l-----------------~~G~~  136 (268)
                      .|.|.|++||||||+++.|++.+|+++++.+++.+....    .+.+.  ...+.+.+                 ..|+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            799999999999999999999999999999999876521    11100  01111111                 12332


Q ss_pred             ccHH-----------------HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          137 VSED-----------------IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       137 ip~~-----------------~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ++.+                 .+.+.+.+.+...   . .++|+||....  +  .  -...+|++|||++|++++++|+
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~vi~g~~~~--~--~--~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV---P-PPFVAEGRDMG--T--A--VFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS---C-SCEEEEESSCC--C--C--CCTTCSEEEEEECCHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh---c-CCEEEEcccee--E--E--EecCCcEEEEEECCHHHHHHHH
Confidence            2210                 1112222222222   2 67899986322  0  0  0134789999999999999998


Q ss_pred             hHHHHHHHHHHHHHchHHHHHH----HhCCcEEEEeCCC-CHHHHHHHHHHHHH
Q 024390          200 GGSLKEKLEAYAELSKPLEDYY----QKQKKLLEFQVGS-APVETWQGLLTALH  248 (268)
Q Consensus       200 ~~~~~~rl~~y~~~~~~l~~~y----~~~~~l~~Ida~~-s~eev~~~I~~~L~  248 (268)
                      ..+.....+...+........|    ......+.||++. +++++.++|.+.+.
T Consensus       154 ~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          154 ARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             HhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            4321100111111111111112    1223347889875 99999999998774

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.43  E-value=8.8e-13  Score=110.12  Aligned_cols=159  Identities=9%  Similarity=0.038  Sum_probs=94.2

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh----ccCcccHHHHH-------
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN----RGEVVSEDIIF-------  143 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~----~G~~ip~~~~~-------  143 (268)
                      +.++++|+|.|++||||||+++.|++. |+++++++++++... ++.+  ..+.+.+.    +|. +....+.       
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~-i~~~~l~~~~~~~~   79 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGR-LDRRALARLVFSDP   79 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTE-ECHHHHHHHHTTSH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCC-cCHHHHHHHHhCCH
Confidence            456789999999999999999999998 999999999988764 2211  22222221    121 1221111       


Q ss_pred             -----------HHH-HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHH
Q 024390          144 -----------GLL-SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLK  204 (268)
Q Consensus       144 -----------~ll-~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~  204 (268)
                                 .++ .+.+......++..+|+|+ |.-..  ..+.  ..+|.+|+|+++.+++++|+..       .+.
T Consensus        80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~--~~~~--~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~  154 (203)
T 1uf9_A           80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFE--KGWE--GRLHGTLLVAAPLEERVRRVMARSGLSREEVL  154 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTT--TTCG--GGSSEEEEECCCHHHHHHHHHTTTCCTTHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceec--cCch--hhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence                       111 1222211001246678886 32111  0011  2478999999999999999832       222


Q ss_pred             HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +++.   .+. +...++...+  +.||++.+++++.++|.+.+..
T Consensus       155 ~~i~---~~~-~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~~  193 (203)
T 1uf9_A          155 ARER---AQM-PEEEKRKRAT--WVLENTGSLEDLERALKAVLAE  193 (203)
T ss_dssp             HHHT---TSC-CHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHS
T ss_pred             HHHH---HCC-ChhHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence            2222   111 1222233333  3688878999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.42  E-value=1.6e-12  Score=107.75  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH--HHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LSK  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l--l~~  148 (268)
                      .+++.|+|+|+|||||||+++.|++.++     +.+++. |.++..+.....+...-+          ......+  +..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~   79 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTTVSEGAGFTREER----------LRHLKRIAWIAR   79 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence            4678999999999999999999999885     234554 444554332111100000          0011111  111


Q ss_pred             HHHcCCccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHHHHHHH-HHHHHchHHHHHHHh
Q 024390          149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKLE-AYAELSKPLEDYYQK  223 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~-~y~~~~~~l~~~y~~  223 (268)
                      .+..    .+..+|.|+......+.+.+.+    ...++++|+|++|++++.+|+......+.. ...+....+.+.|..
T Consensus        80 ~~~~----~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~  155 (186)
T 2yvu_A           80 LLAR----NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEP  155 (186)
T ss_dssp             HHHT----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCC
T ss_pred             HHHh----CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccC
Confidence            1221    2445677876544333333332    234789999999999999998432222211 000011112233432


Q ss_pred             -CCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          224 -QKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       224 -~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                       ....+.||++ .+++++.++|.+.+..
T Consensus       156 ~~~~~~~Id~~~~~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          156 PENPQLVLDTESNTIEHNVSYLYSLVKA  183 (186)
T ss_dssp             CSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence             1235788987 7999999999998864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.42  E-value=4.4e-13  Score=117.58  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=45.2

Q ss_pred             CCCeEEEEecCHHHHHhhhhHHH---HH-HHHHHHHHchHHH-------------HHHHhCCcEEEEeCCCCHHHHHHHH
Q 024390          181 EIDLVVNFKCADNFIVTNRGGSL---KE-KLEAYAELSKPLE-------------DYYQKQKKLLEFQVGSAPVETWQGL  243 (268)
Q Consensus       181 ~~d~vV~Ld~~~e~l~~Rl~~~~---~~-rl~~y~~~~~~l~-------------~~y~~~~~l~~Ida~~s~eev~~~I  243 (268)
                      .||++|+|++|++++++|+..+-   .. .-..|.+......             .+|.+ ..+++||++.++++|+++|
T Consensus       174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I  252 (263)
T 1p5z_B          174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESL  252 (263)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHH
Confidence            79999999999999999983320   00 0011222211111             11222 4588999999999999999


Q ss_pred             HHHHHhh
Q 024390          244 LTALHLQ  250 (268)
Q Consensus       244 ~~~L~~~  250 (268)
                      .+.|...
T Consensus       253 ~~~l~~~  259 (263)
T 1p5z_B          253 VEKVKEF  259 (263)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.40  E-value=3.6e-12  Score=109.96  Aligned_cols=166  Identities=11%  Similarity=0.078  Sum_probs=96.9

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc----CCCCh------hHHHHHH--------------H
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPRSS------LHKQIAN--------------A  130 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~----~~~~~------~g~~i~~--------------~  130 (268)
                      +.++.+|+|+|++||||||+++.|++.+|+++++.|++++...    ..+.+      +...+..              .
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i   92 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV   92 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence            3577889999999999999999999999999999999998632    12222      1111110              1


Q ss_pred             HhccCccc----HHHHH-------------HHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHH
Q 024390          131 VNRGEVVS----EDIIF-------------GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADN  193 (268)
Q Consensus       131 l~~G~~ip----~~~~~-------------~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e  193 (268)
                      +..|+.++    .+.+.             ..+.+.+...  ..+.++|+||+....   ..   +..++++|+|+++++
T Consensus        93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~---l~~~d~vi~L~a~~e  164 (236)
T 1q3t_A           93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VV---LPQAELKIFLVASVD  164 (236)
T ss_dssp             EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SS---GGGCSEEEEEECCHH
T ss_pred             eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hh---ccCCCEEEEEECCHH
Confidence            12343221    11121             1222222111  235689999986531   01   124689999999999


Q ss_pred             HHHhhhhHHHHHHH---------HHHHHHchH-----HHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          194 FIVTNRGGSLKEKL---------EAYAELSKP-----LEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       194 ~l~~Rl~~~~~~rl---------~~y~~~~~~-----l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                      ++++|+..+..+|-         +.+.+...+     +..+|.. ...+.||++ .++++++++|.+.+..
T Consensus       165 ~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~~I~~~l~~  234 (236)
T 1q3t_A          165 ERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVEKIKAEAEK  234 (236)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            99999622211111         111110000     0012221 233678887 5999999999998864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.39  E-value=4.7e-13  Score=113.66  Aligned_cols=163  Identities=13%  Similarity=0.074  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh----cCCCChhHHHHHHH-------H-----------hccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD----LSPRSSLHKQIANA-------V-----------NRGE  135 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~----~~~~~~~g~~i~~~-------l-----------~~G~  135 (268)
                      ++.|+|+|++||||||+++.|++.+|++++++|++++..    ...+.  +..+.+.       +           ..|+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~   80 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE   80 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence            467999999999999999999999999999999998863    12221  2223332       1           2343


Q ss_pred             cccHH----HHHH---------HHHHHHHcC--CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390          136 VVSED----IIFG---------LLSKRLEDG--YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       136 ~ip~~----~~~~---------ll~~~l~~~--~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      .++.+    .+..         .+.+.+...  ....+.++|++|-  ....    .-+..++++|+|++|.+++.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~--~~~~----~~~~~~~~vi~l~a~~e~~~~R~~  154 (219)
T 2h92_A           81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGR--DIGT----VVLPDADLKVYMIASVEERAERRY  154 (219)
T ss_dssp             ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEES--SCCC----CCCTTCSEEEEEECCHHHHHHHHH
T ss_pred             cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcC--Cccc----eecCCCCEEEEEECCHHHHHHHHH
Confidence            32211    1111         111111100  0113467999983  1100    001356899999999999999973


Q ss_pred             HHHHHH---------HHHHHHHchHH-----HHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390          201 GSLKEK---------LEAYAELSKPL-----EDYYQKQKKLLEFQVG-SAPVETWQGLLTALHL  249 (268)
Q Consensus       201 ~~~~~r---------l~~y~~~~~~l-----~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~  249 (268)
                      .....|         .+.+.++....     ..+|.. ...+.||++ .++++++++|.+.+..
T Consensus       155 ~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~~  217 (219)
T 2h92_A          155 KDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVSQ  217 (219)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHhc
Confidence            221111         01111111000     022221 233678876 5999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.38  E-value=3.8e-13  Score=113.49  Aligned_cols=164  Identities=11%  Similarity=0.037  Sum_probs=97.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhc-c--CcccHHHHHHHHHHHHHc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNR-G--EVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~-G--~~ip~~~~~~ll~~~l~~  152 (268)
                      ++.+|.|.|++||||||+++.|++.+ ++.+++.+++++....-.  .+   ...... .  ..+........+...+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~~   94 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIE--TD---KNGFLQYDVLEALNMEKMMSAISCWMES   94 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSC--BC---TTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhh--cc---ccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999 899999998775431100  00   000000 0  001112222222222221


Q ss_pred             ---CC-------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHHHHH-HHHHHch
Q 024390          153 ---GY-------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKLE-AYAELSK  215 (268)
Q Consensus       153 ---~~-------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~rl~-~y~~~~~  215 (268)
                         ..       ......+|+||++...  .+.+  ...+|.+|+++++.+++.+|+..+      ..+++. .+.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~  170 (207)
T 2qt1_A           95 ARHSVVSTDQESAEEIPILIIEGFLLFN--YKPL--DTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYL  170 (207)
T ss_dssp             HTTSSCCC-----CCCCEEEEECTTCTT--CGGG--TTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHH
T ss_pred             CCCCCcCCCeeecCCCCEEEEeehHHcC--cHHH--HHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHH
Confidence               00       0124678999965321  1111  135799999999999999997321      011222 1111222


Q ss_pred             HHHHHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          216 PLEDYYQKQ-KKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       216 ~l~~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ...+.+... +.++.||++.++++++++|.+.+..
T Consensus       171 ~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          171 KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            233445543 5678899999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.37  E-value=1.1e-12  Score=114.43  Aligned_cols=164  Identities=14%  Similarity=0.082  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------ccchhHHHHhhcCCCChhHHHHHHHHhccCc-------cc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQDLSPRSSLHKQIANAVNRGEV-------VS  138 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~----------~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-------ip  138 (268)
                      .++++|.|.|++||||||+|+.|++.+|++          ++++|++++...      ...+. ....|..       ..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~------~~~~~-~~~~g~~~f~~~~~~d   92 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT------SEQKA-KALKGQFNFDHPDAFD   92 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC------HHHHH-HHHTTCSCTTSGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC------hhhhh-hhccCCCCCCCcchhh
Confidence            356789999999999999999999999987          699999887421      11111 1122322       22


Q ss_pred             HHHHHHHHHHHHHcCC-------------------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          139 EDIIFGLLSKRLEDGY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       139 ~~~~~~ll~~~l~~~~-------------------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      .+.+.+.|........                   ......+|+||.+....  ..+..  .+|.+|+|+++.+++++|+
T Consensus        93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~--~~d~vi~l~~~~e~~~~R~  168 (252)
T 1uj2_A           93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD--LFQMKLFVDTDADTRLSRR  168 (252)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH--HCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH--hcCeeEEEeCCHHHHHHHH
Confidence            2233444443321100                   01346799999654211  11222  3589999999999999998


Q ss_pred             hHHH--------HHHHHHHHHHchH-HHH----HHHhCCcEE--EEeCCCCHHHHHHHHHHHHHhh
Q 024390          200 GGSL--------KEKLEAYAELSKP-LED----YYQKQKKLL--EFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       200 ~~~~--------~~rl~~y~~~~~~-l~~----~y~~~~~l~--~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ..+-        ++-.+.|..+..+ ...    ++...+.++  .||++.++++++++|.+.+...
T Consensus       169 ~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~  234 (252)
T 1uj2_A          169 VLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGG  234 (252)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccc
Confidence            4321        1111122222211 111    111123333  2487789999999999998754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.34  E-value=1.9e-11  Score=106.77  Aligned_cols=167  Identities=16%  Similarity=0.084  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc----CCC-----ChhHHHHHHHH----h----------c
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPR-----SSLHKQIANAV----N----------R  133 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~----~~~-----~~~g~~i~~~l----~----------~  133 (268)
                      .+.+|.|+|++||||||+++.|++++|+.+++.|.++|...    ..+     ...-..+...+    .          .
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  105 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE  105 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence            56789999999999999999999999999999999985532    111     11011111100    0          0


Q ss_pred             cCcccH-----------------HHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHH
Q 024390          134 GEVVSE-----------------DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV  196 (268)
Q Consensus       134 G~~ip~-----------------~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~  196 (268)
                      +..+.+                 ..+.+.+.......  ..+.|+|+||--....      -+...+++|||++|.+++.
T Consensus       106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~--a~~~~~V~~gr~~~~~------v~~~~~~~ifl~A~~e~r~  177 (252)
T 4e22_A          106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAF--REAPGLIADGRDMGTI------VFPDAPVKIFLDASSQERA  177 (252)
T ss_dssp             TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT--CCSSCEEEEESSCCCC------CSTTCSEEEEEECCHHHHH
T ss_pred             CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hhCCCEEEEeceecee------ecCCCCEEEEEECCHHHHH
Confidence            001111                 11223333333332  3467899987311000      0124689999999999999


Q ss_pred             hhhhHHHHHHHH--HHHHHchHH--------HH---HHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          197 TNRGGSLKEKLE--AYAELSKPL--------ED---YYQKQKKLLEFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       197 ~Rl~~~~~~rl~--~y~~~~~~l--------~~---~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      +|....+..+-.  .+.+....+        ..   .+.....-+.||++ .+++++.++|.+.+....
T Consensus       178 ~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~  246 (252)
T 4e22_A          178 HRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRIL  246 (252)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence            997432222100  011100000        00   01111123678866 489999999999998653

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.34  E-value=4.2e-11  Score=101.43  Aligned_cols=162  Identities=10%  Similarity=0.044  Sum_probs=89.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----------------HHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----------------EDI  141 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----------------~~~  141 (268)
                      .++|.|.|++||||||+++.||+++|++++| +++++...... .+.  ....-..|+..+                .+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~-g~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDG-RYS--KEVLERFDEKPMNFAFIPVPAGGTTISLEQD   81 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC------------------------------------CH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhc-CCC--HHHHHHHhhhchhHHHHHhccccccccccHH
Confidence            4689999999999999999999999999999 89987643221 111  000101111111                011


Q ss_pred             HHHHHHHHHHcCCcc--CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHH
Q 024390          142 IFGLLSKRLEDGYYR--GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAE  212 (268)
Q Consensus       142 ~~~ll~~~l~~~~~~--~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~  212 (268)
                      +.....+.+.+.  .  ...++|++|.  .-.  -.+.. ..-.++|||++|.+++.+|+.+       ...+++..-.+
T Consensus        82 ~~~~~~~~i~~l--a~~~~~~~Vi~Gr--~g~--~vl~~-~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~  154 (201)
T 3fdi_A           82 IAIRQFNFIRKK--ANEEKESFVIVGR--CAE--EILSD-NPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDK  154 (201)
T ss_dssp             HHHHHHHHHHHH--HHTSCCCEEEEST--THH--HHTTT-CTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HhhcCCCEEEEEC--Ccc--hhcCC-CCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            112222322221  1  2356888874  111  11111 1125899999999999999832       22333333223


Q ss_pred             HchHHHHHHHh------CCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          213 LSKPLEDYYQK------QKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       213 ~~~~l~~~y~~------~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      ...+...+|..      ...-+.||++ .+++++.+.|.+.+..+
T Consensus       155 ~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          155 MRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence            33333332211      1122567765 69999999999998753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.31  E-value=5e-12  Score=106.55  Aligned_cols=150  Identities=10%  Similarity=0.090  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc----CcccH-------------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG----EVVSE-------------  139 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G----~~ip~-------------  139 (268)
                      ..++|.|+|++||||||+++.|++.+|+++|++|+++++...+   ..+.+.+.+...    ..+..             
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence            5678999999999999999999999999999999998886532   112222222110    00110             


Q ss_pred             -----HHHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHH
Q 024390          140 -----DIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAY  210 (268)
Q Consensus       140 -----~~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y  210 (268)
                           .+....+    ..++..    .+..+|+|+ |.-.+. . +.  ..+|.+|+++||+++.++|+   +..++..|
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~~----~~~~vv~d~-pll~e~-~-~~--~~~d~vi~v~a~~e~r~~Rl---i~~q~~~~  155 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIINK----TSGLIVIEA-ALLKRM-G-LD--QLCDHVITVVASRETILKRN---READRRLK  155 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT----CCEEEEEEC-TTTTTT-T-GG--GGCSEEEEEECCHHHHHHHC---SSHHHHHT
T ss_pred             HHHHHhhhCHHHHHHHHHHHHH----cCCEEEEEE-eceeec-C-hH--HhCCEEEEEECCHHHHHHHH---HHhcCCch
Confidence                 1111112    222222    134566774 532221 1 22  24689999999999999998   11111111


Q ss_pred             HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .      .+ ..+.. -+.|+.+.+++++.++|.+++..
T Consensus       156 ~------~~-~~~~A-D~vI~n~~~~~~l~~~v~~~~~~  186 (192)
T 2grj_A          156 F------QE-DIVPQ-GIVVANNSTLEDLEKKVEEVMKL  186 (192)
T ss_dssp             T------CT-TCCCC-SEEEECSSCHHHHHHHHHHHHHH
T ss_pred             h------hh-HHhcC-CEEEECCCCHHHHHHHHHHHHHH
Confidence            0      00 01111 24577788999999999988753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.30  E-value=1.4e-11  Score=103.90  Aligned_cols=162  Identities=9%  Similarity=0.015  Sum_probs=91.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcCC---CCh----hHHHHHHHHhccCcccHH-------
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVSED-------  140 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~~---~~~----~g~~i~~~l~~G~~ip~~-------  140 (268)
                      .+++.|+|+|+|||||||+++.|++.++- .+.+.....|.....   +..    ....+...+..|..+...       
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            46778999999999999999999998853 233333333322110   000    012233333334322110       


Q ss_pred             -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcC--CCeEEEEe-cCHHHHHhhhh-------HHHHHHHHH
Q 024390          141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFK-CADNFIVTNRG-------GSLKEKLEA  209 (268)
Q Consensus       141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~--~d~vV~Ld-~~~e~l~~Rl~-------~~~~~rl~~  209 (268)
                       .....+...+.     .+..+|+|+.+....   .+.+...  -.++|||+ +|.+++.+|+.       +.+++|+..
T Consensus        90 ~~~~~~i~~~l~-----~g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~  161 (204)
T 2qor_A           90 GTLKSEYDLAVG-----EGKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQE  161 (204)
T ss_dssp             EEEHHHHHHHHH-----TTCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-----cCCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence             00122333333     367899998664333   2333222  23799998 99999999982       345666655


Q ss_pred             HHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          210 YAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       210 y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ......+.   |......+.+| + ++++++++|.++|...
T Consensus       162 ~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~  197 (204)
T 2qor_A          162 LTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLLGS  197 (204)
T ss_dssp             HHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHHHH
Confidence            44332211   22222233444 4 8999999999999754

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.30  E-value=8.9e-11  Score=101.19  Aligned_cols=168  Identities=13%  Similarity=0.087  Sum_probs=93.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CCh------hHHHHHH-HH---hcc-----------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSS------LHKQIAN-AV---NRG-----------  134 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~~------~g~~i~~-~l---~~G-----------  134 (268)
                      ..++|.|.|++||||||+++.||+++|+++++ +++++..... +-+      .++.... .+   ..+           
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence            35789999999999999999999999999999 6777664422 111      1111110 00   000           


Q ss_pred             --CcccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHH--hhcCCCeEEEEecCHHHHHhhhhH-------HH
Q 024390          135 --EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD--QLAEIDLVVNFKCADNFIVTNRGG-------SL  203 (268)
Q Consensus       135 --~~ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~--~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~  203 (268)
                        ....++.+.....+.+.+.  ....++|+.|.  .-.  -.+.  .-..-.++|||++|.+++.+|+.+       ..
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~l--a~~~~~Vi~Gr--ggg--~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a  165 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMREL--AESEPCIFVGR--AAG--YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERA  165 (223)
T ss_dssp             ------HHHHHHHHHHHHHHH--HHHSCEEEEST--THH--HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHH--HhCCCEEEEeC--Ccc--hhcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence              0011222233333333322  12345777764  111  1121  111125899999999999999832       23


Q ss_pred             HHHHHHHHHHchHHHHHHHh------CCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          204 KEKLEAYAELSKPLEDYYQK------QKKLLEFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       204 ~~rl~~y~~~~~~l~~~y~~------~~~l~~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      .+++....++..+...+|-.      ...-+.||++ .+++++.+.|.+.+..+.
T Consensus       166 ~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~~  220 (223)
T 3hdt_A          166 KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLKG  220 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            34444434444444443311      1123567865 699999999999998653

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.29  E-value=9.9e-11  Score=99.99  Aligned_cols=163  Identities=11%  Similarity=0.014  Sum_probs=103.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----cccH------------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE------------  139 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip~------------  139 (268)
                      ...-|.|+|.+||||||+++.|++ +|+++||+|.+.++...++.+....+.+.+..+.     .+..            
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~   86 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED   86 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence            455799999999999999999998 9999999999999988777766666666553211     1221            


Q ss_pred             ------HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HHH
Q 024390          140 ------DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKE  205 (268)
Q Consensus       140 ------~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~  205 (268)
                            .++-.++.+++.... .....-+|+|. |.-.+.. .+.  ..+|.+|+++||+++.++|+.++       ..+
T Consensus        87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~--~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~  162 (210)
T 4i1u_A           87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWK--ARCDRVLVVDCPVDTQIARVMQRNGFTREQVEA  162 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHH--HHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Ccc--ccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHH
Confidence                  122222222222110 01233466774 5322201 122  24799999999999999999433       233


Q ss_pred             HHHHHHHHchHHHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          206 KLEAYAELSKPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      |+   ..+. +..+.+...+  ++|+.+ .+++++.++|..++...
T Consensus       163 ri---~~Q~-~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~~  202 (210)
T 4i1u_A          163 II---ARQA-TREARLAAAD--DVIVNDAATPDALAVQVDALHQRY  202 (210)
T ss_dssp             HH---HHSC-CHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HH---HHcC-ChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence            33   2333 2344343333  456778 89999999999888653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.28  E-value=1.6e-11  Score=100.49  Aligned_cols=161  Identities=10%  Similarity=0.011  Sum_probs=83.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHhhcCCCCh---hHHHHHHHH-hccCcccHHHH---HHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQDLSPRSS---LHKQIANAV-NRGEVVSEDII---FGLLSK  148 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~~~~~~~~---~g~~i~~~l-~~G~~ip~~~~---~~ll~~  148 (268)
                      ++.|+|+|+|||||||+++.|+++++..++  ++++++.. ......   .+..+.+.. ..+........   ...+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            468999999999999999999999987655  46665543 221100   000000000 00000001111   111222


Q ss_pred             HHHcCCccCccEEEEcCCcC-CHHHHH-HHHhhcC-CCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhCC
Q 024390          149 RLEDGYYRGEIGFILDGLPR-SRIQAE-ILDQLAE-IDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQK  225 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr-~~~qa~-~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~  225 (268)
                      .+.     .+..+|+|+... ...+.+ ..+.+.. +..+|+|+||.+++.+|+..+-..-......+...+   +....
T Consensus        82 ~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~~~~~~~~~---~~~~~  153 (178)
T 1qhx_A           82 MAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVV---HEGVE  153 (178)
T ss_dssp             HHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTTGG---GTTCC
T ss_pred             HHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcccchhhhhchhh---ccCCC
Confidence            222     345789998542 222122 2222323 336889999999999998432110001111111111   11112


Q ss_pred             cEEEEeCC-CCHHHHHHHHHHHH
Q 024390          226 KLLEFQVG-SAPVETWQGLLTAL  247 (268)
Q Consensus       226 ~l~~Ida~-~s~eev~~~I~~~L  247 (268)
                      .-+.||++ .+++++.++|.+.|
T Consensus       154 ~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          154 YDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             CSEEEETTSSCHHHHHHHHHTTC
T ss_pred             CcEEEECCCCCHHHHHHHHHHHh
Confidence            33567876 59999999998654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.23  E-value=8.8e-13  Score=111.17  Aligned_cols=164  Identities=16%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChh-HHHHHHHHhc--cCcccHHHHHHHH--HH-----
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSL-HKQIANAVNR--GEVVSEDIIFGLL--SK-----  148 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~-g~~i~~~l~~--G~~ip~~~~~~ll--~~-----  148 (268)
                      +.|+|+|++||||||+++.|++.++...+++. +++.. ..+++. +..++..+..  |...++.....++  .+     
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAFP-RYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV   78 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEESS-EEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEeec-CCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence            46999999999999999999999864332221 00100 000111 2222222211  1111111111111  11     


Q ss_pred             -HHHcCCccCccEEEEcCCcCCH--HHH------------HHHHhh-------cCCCeEEEEecCHHHHHhhhhHHHH--
Q 024390          149 -RLEDGYYRGEIGFILDGLPRSR--IQA------------EILDQL-------AEIDLVVNFKCADNFIVTNRGGSLK--  204 (268)
Q Consensus       149 -~l~~~~~~~~~g~IlDGfPr~~--~qa------------~~l~~~-------~~~d~vV~Ld~~~e~l~~Rl~~~~~--  204 (268)
                       .+... ...+..+|+|+++.+.  .|.            +.+...       ..||.+|+|++|++++.+|+..+-.  
T Consensus        79 ~~i~~~-l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~  157 (214)
T 1gtv_A           79 HTIQGL-CRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD  157 (214)
T ss_dssp             HHHHHE-EEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB
T ss_pred             HHHHHH-hhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc
Confidence             11111 1235668899998653  121            223322       2689999999999999999854321  


Q ss_pred             -----HHH---HHHHHHchHHHHHHHh-C--CcEEEEeCCCCHHHHHHHHHH
Q 024390          205 -----EKL---EAYAELSKPLEDYYQK-Q--KKLLEFQVGSAPVETWQGLLT  245 (268)
Q Consensus       205 -----~rl---~~y~~~~~~l~~~y~~-~--~~l~~Ida~~s~eev~~~I~~  245 (268)
                           .++   ..|.+........+.+ .  ..+++||++.++++++++|.+
T Consensus       158 ~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          158 PGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             BEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence                 111   1333332222111111 1  356889999999999988753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.22  E-value=7.2e-11  Score=97.13  Aligned_cols=159  Identities=14%  Similarity=0.128  Sum_probs=84.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchh-HHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR  149 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~-dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~  149 (268)
                      .+++.|+|+|++||||||+++.|++.+   |++++.++ +.++..+........      ..    .++.+.++.  ...
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~   72 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP------ED----REENVRRIAEVAKL   72 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSH------HH----HHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccc------cc----HHHHHHHHHHHHHH
Confidence            467899999999999999999999998   98887653 555543321110000      00    011111111  111


Q ss_pred             HHcCCccCccEEEEcCCcCC-H---HHHHHH-HhhcCCCeEEEEecCHHHHHhhhhHHHHHHHH--HHHHHchHHHHHHH
Q 024390          150 LEDGYYRGEIGFILDGLPRS-R---IQAEIL-DQLAEIDLVVNFKCADNFIVTNRGGSLKEKLE--AYAELSKPLEDYYQ  222 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~-~---~qa~~l-~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--~y~~~~~~l~~~y~  222 (268)
                      +..    .+ .+++.|+... .   .....+ .....++.+|+|+||++++.+|+...+.++..  .+..+ ..+...|.
T Consensus        73 ~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~  146 (179)
T 2pez_A           73 FAD----AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-TGIDSEYE  146 (179)
T ss_dssp             HHH----TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-BTTTBCCC
T ss_pred             HHH----CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-ccCCcccc
Confidence            212    12 2344343222 1   121222 22235789999999999999998532111100  00000 00111222


Q ss_pred             hC--CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          223 KQ--KKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       223 ~~--~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +.  ..++..+++.+++++.++|.+.+...
T Consensus       147 ~~~~ad~vid~~~~~~~~~~~~i~~~l~~~  176 (179)
T 2pez_A          147 KPEAPELVLKTDSCDVNDCVQQVVELLQER  176 (179)
T ss_dssp             CCSSCSEEEETTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence            11  22433344579999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.16  E-value=7.1e-11  Score=103.06  Aligned_cols=119  Identities=11%  Similarity=0.040  Sum_probs=69.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHhhcCCC----ChhHHHHHHHHhccCcccHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSKR  149 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir~~~~~~----~~~g~~i~~~l~~G~~ip~~~~~~ll~~~  149 (268)
                      .+++.|+|+|+|||||||+++.|++.++  ..+++. |.+|......    ...|..+.+....   .....+..++...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~  105 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL  105 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence            4668899999999999999999999997  345555 5555543210    0011111111110   0011222233322


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHH
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL  203 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~  203 (268)
                      +.     .+.+||+||++++..+...+.+.    ...-.++++++|.+++.+|...+.
T Consensus       106 ~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          106 SS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             Hh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence            22     24589999999877664443322    222236788999999999985443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.16  E-value=3.2e-10  Score=98.35  Aligned_cols=41  Identities=15%  Similarity=0.125  Sum_probs=36.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      .+++.|+|.|++||||||+++.|++++|+.+++.|++++..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            45678999999999999999999999999999999998774

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.15  E-value=1.5e-10  Score=103.14  Aligned_cols=112  Identities=11%  Similarity=0.063  Sum_probs=71.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc-------cHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-------SEDIIFGLL  146 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i-------p~~~~~~ll  146 (268)
                      .++..|+|+|+|||||||+++.|++++  ++.+||. |.+|......   ...+...   |+..       ...+...++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~~~~~---~~~~~~~---~~~a~~~~~~~~~~~~~~~v  103 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQHPNF---DELVKLY---EKDVVKHVTPYSNRMTEAII  103 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTTSTTH---HHHHHHH---GGGCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHhchhh---HHHHHHc---cchhhhhhhHHHHHHHHHHH
Confidence            467889999999999999999999998  7888887 4555543321   1111111   1111       122233444


Q ss_pred             HHHHHcCCccCccEEEEcCCcCCHHHHHHHHh-h---cCCCeEEEEecCHHHH----Hhhh
Q 024390          147 SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-L---AEIDLVVNFKCADNFI----VTNR  199 (268)
Q Consensus       147 ~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~-~---~~~d~vV~Ld~~~e~l----~~Rl  199 (268)
                      ...+..     +..+|+|+.+....+...+.+ +   .....+++|.+|++++    .+|+
T Consensus       104 ~~~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl  159 (287)
T 1gvn_B          104 SRLSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY  159 (287)
T ss_dssp             HHHHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHH
Confidence            444443     567999999888665444322 2   2233479999999999    7776

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.12  E-value=5e-10  Score=93.96  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=88.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGLLSKR  149 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~--~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~~~~~ll~~~  149 (268)
                      .++..|+|+|++||||||+++.|+..+   |..  +++.+++. ..+.....+. ......+        ..+.. +...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~   92 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNRDLSFKAEDRAENI--------RRVGE-VAKL   92 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTTTCCSSHHHHHHHH--------HHHHH-HHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhcccCcChHHHHHHH--------HHHHH-HHHH
Confidence            357789999999999999999999998   666  77775543 3222111110 0000000        00011 1122


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhhcC--CCeEEEEecCHHHHHhhhhHHHHHHH--HHHHHHchHHHHHHHhC-
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELSKPLEDYYQKQ-  224 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~--~d~vV~Ld~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~-  224 (268)
                      +..    .+..+|.++.-......+.+.+...  .-++|||++|.+++.+|....+..+.  ..+. ....+...|... 
T Consensus        93 ~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~-~~~~~~~~~~~~~  167 (200)
T 3uie_A           93 FAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIK-GFTGIDDPYEPPL  167 (200)
T ss_dssp             HHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSC-SCBTTTBCCCCCS
T ss_pred             HHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCC-CCCCCCCcCcCCC
Confidence            222    2455666654333444455554432  23579999999999999843221111  0000 001112223321 


Q ss_pred             CcEEEEeCC--CCHHHHHHHHHHHHHhhc
Q 024390          225 KKLLEFQVG--SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       225 ~~l~~Ida~--~s~eev~~~I~~~L~~~~  251 (268)
                      .--+.||++  .+++++.++|.+.|....
T Consensus       168 ~~~~~idt~~~~~~~e~v~~i~~~l~~~~  196 (200)
T 3uie_A          168 NCEISLGREGGTSPIEMAEKVVGYLDNKG  196 (200)
T ss_dssp             SCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence            123567765  599999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.12  E-value=4.5e-10  Score=105.15  Aligned_cols=99  Identities=11%  Similarity=-0.041  Sum_probs=72.1

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      +..+..|+|+|+|||||||+|+.|++.+++.+|+.+++ +       ..                ......+...+.   
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~~----------------~~~~~~~~~~l~---  307 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------SW----------------QRCVSSCQAALR---  307 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------SH----------------HHHHHHHHHHHH---
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------HH----------------HHHHHHHHHHHh---
Confidence            44667899999999999999999999999999999875 1       00                111223333343   


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHH
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS  202 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~  202 (268)
                        .+..+|+|+...+..+...+.+    ......+|+|+++.+++++|+..+
T Consensus       308 --~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R  357 (416)
T 3zvl_A          308 --QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  357 (416)
T ss_dssp             --TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             --cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence              2567999998887766555433    234457999999999999998543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.10  E-value=5.5e-10  Score=109.35  Aligned_cols=163  Identities=15%  Similarity=0.114  Sum_probs=91.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchh-HHHHhhcCCCChhHH-HHHHHHhccCcccHHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHK-QIANAVNRGEVVSEDIIFGLLSKRLE  151 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~-dlir~~~~~~~~~g~-~i~~~l~~G~~ip~~~~~~ll~~~l~  151 (268)
                      +++.|+|+|+|||||||+|+.|++++   |+.++.++ +.+|..+.....+.. .-.+.+       .. +..++...+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~-------r~-i~eva~~~l~  122 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RR-IAEVAKLFAD  122 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH-------HH-HHHHHHHHHh
Confidence            67899999999999999999999999   98887774 677665432211110 000011       01 1122222222


Q ss_pred             cCCccCccEEEEcC-CcCC--HHHHHHH-HhhcCCCeEEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHhC-
Q 024390          152 DGYYRGEIGFILDG-LPRS--RIQAEIL-DQLAEIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQKQ-  224 (268)
Q Consensus       152 ~~~~~~~~g~IlDG-fPr~--~~qa~~l-~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~~-  224 (268)
                           .+.-+|.|+ .|..  ..+...+ .....++++|+|++|.+++.+|+....-+  |-.... ....+...|... 
T Consensus       123 -----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~-~~~~~~~~Ye~p~  196 (630)
T 1x6v_B          123 -----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIK-GFTGIDSEYEKPE  196 (630)
T ss_dssp             -----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC-----CBTTTBCCCCCS
T ss_pred             -----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHH-HHHHhhhhhcccC
Confidence                 233444452 2221  1222222 22234678999999999999998521111  100000 111122334311 


Q ss_pred             CcEEEEeCC-CCHHHHHHHHHHHHHhhccc
Q 024390          225 KKLLEFQVG-SAPVETWQGLLTALHLQHIN  253 (268)
Q Consensus       225 ~~l~~Ida~-~s~eev~~~I~~~L~~~~~~  253 (268)
                      ..-+.||++ .+++++.++|.+.|....+.
T Consensus       197 ~~dlvIDts~~s~eevv~~Il~~L~~~~~i  226 (630)
T 1x6v_B          197 APELVLKTDSCDVNDCVQQVVELLQERDIV  226 (630)
T ss_dssp             SCSEEEETTSSCHHHHHHHHHHHHHHTTSS
T ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHhcCcc
Confidence            122678886 69999999999999876543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.08  E-value=4.8e-10  Score=96.35  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             cCCCeEEEEecCHHHHHhhhhHHH--HHHH--HHHHHHchHHH-HHH-----HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          180 AEIDLVVNFKCADNFIVTNRGGSL--KEKL--EAYAELSKPLE-DYY-----QKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       180 ~~~d~vV~Ld~~~e~l~~Rl~~~~--~~rl--~~y~~~~~~l~-~~y-----~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ..||++|+|++|++++++|+.++-  .++.  ..|.+...... ++.     .....+++||+++++++|+++|.+.+..
T Consensus       145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~  224 (230)
T 2vp4_A          145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS  224 (230)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            369999999999999999983220  0110  02322222211 111     2234688999999999999999998864

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.04  E-value=6.6e-10  Score=107.52  Aligned_cols=162  Identities=17%  Similarity=0.093  Sum_probs=90.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-----CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-----~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~  151 (268)
                      .++.|+|+|+|||||||+|+.|++.++.     .+++. |.++..+.....+...-+...     +  +.+..++...+.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l~  442 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIVK  442 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHHh
Confidence            4678999999999999999999998863     56665 556665432211111000000     0  011122222222


Q ss_pred             cCCccCccEEEEcCCcCCHHHHHHHHhh-cCCC-eEEEEecCHHHHHhhhhHHH-H-HHHHHHHHHchHHHHHHHhCCcE
Q 024390          152 DGYYRGEIGFILDGLPRSRIQAEILDQL-AEID-LVVNFKCADNFIVTNRGGSL-K-EKLEAYAELSKPLEDYYQKQKKL  227 (268)
Q Consensus       152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d-~vV~Ld~~~e~l~~Rl~~~~-~-~rl~~y~~~~~~l~~~y~~~~~l  227 (268)
                           .+.++|+|+........+.+.+. ..++ ++|+|++|.+++.+|+.... . .+.............|+......
T Consensus       443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~ad  517 (546)
T 2gks_A          443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPE  517 (546)
T ss_dssp             -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCS
T ss_pred             -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCc
Confidence                 35689999744333333333333 2357 89999999999999984211 0 01111111110000111111123


Q ss_pred             EEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          228 LEFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       228 ~~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      ++||++ .++++++++|.+.|...+
T Consensus       518 ivIDts~~s~eev~~~I~~~L~~~g  542 (546)
T 2gks_A          518 VRVDTTKLTPEESALKILEFLKKEG  542 (546)
T ss_dssp             EEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcC
Confidence            678885 799999999999997643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.00  E-value=1.6e-09  Score=93.42  Aligned_cols=68  Identities=13%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             CCCeEEEEecCHHHHHhhhhHHH--HHH--HHHHHHHchH-HHHHHH-----------hCCcEEEEeCCCCHHHHHHHHH
Q 024390          181 EIDLVVNFKCADNFIVTNRGGSL--KEK--LEAYAELSKP-LEDYYQ-----------KQKKLLEFQVGSAPVETWQGLL  244 (268)
Q Consensus       181 ~~d~vV~Ld~~~e~l~~Rl~~~~--~~r--l~~y~~~~~~-l~~~y~-----------~~~~l~~Ida~~s~eev~~~I~  244 (268)
                      .||++|+|++|++++++|+.++-  .++  -..|.+.... ...++.           ....+++||++.+++++.+.+.
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~  228 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE  228 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHH
Confidence            79999999999999999973210  001  0122222222 122221           2457899999999988888777


Q ss_pred             HHHH
Q 024390          245 TALH  248 (268)
Q Consensus       245 ~~L~  248 (268)
                      .++.
T Consensus       229 ~i~~  232 (241)
T 2ocp_A          229 DLMR  232 (241)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.88  E-value=6.7e-09  Score=100.96  Aligned_cols=159  Identities=11%  Similarity=0.095  Sum_probs=85.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC----C--CccchhHHHHhhcCCCChhHHH-HHHHHhccCcccHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----V--PRISMSSIVRQDLSPRSSLHKQ-IANAVNRGEVVSEDIIFGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~----~--~~is~~dlir~~~~~~~~~g~~-i~~~l~~G~~ip~~~~~~ll~~~  149 (268)
                      +++.|+|+|+|||||||+|+.|+++++    .  .+++. |.++..+......... ..+.+        ..+..++...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~~  465 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATEL  465 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHHH
Confidence            568899999999999999999999986    3  34554 5566554322111000 00000        0111223222


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhh-c--CCCeEEEEecCHHHHHhhhhHHHHHHH-----HHHHHHchHHHHHH
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL-A--EIDLVVNFKCADNFIVTNRGGSLKEKL-----EAYAELSKPLEDYY  221 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~--~~d~vV~Ld~~~e~l~~Rl~~~~~~rl-----~~y~~~~~~l~~~y  221 (268)
                      +.     .+..+|.|.+-......+.+.++ .  ...++|||++|.+++.+|....+.++.     +.+.....   .|+
T Consensus       466 ~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~---~~~  537 (573)
T 1m8p_A          466 TR-----AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDD---PYE  537 (573)
T ss_dssp             HH-----TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTB---CCC
T ss_pred             Hh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccc---ccc
Confidence            22     24456666432112222222222 1  245899999999999999733211110     00000001   112


Q ss_pred             HhCCcEEEEeCC-CCHHHHHHHHHHHHHhhcc
Q 024390          222 QKQKKLLEFQVG-SAPVETWQGLLTALHLQHI  252 (268)
Q Consensus       222 ~~~~~l~~Ida~-~s~eev~~~I~~~L~~~~~  252 (268)
                      .....-+.||++ .+++++.++|.+.|...++
T Consensus       538 ~p~~~dl~IDts~~s~eevv~~Il~~l~~~~~  569 (573)
T 1m8p_A          538 TPEKADLVVDFSKQSVRSIVHEIILVLESQGF  569 (573)
T ss_dssp             CCSSCSEEECTTTSCHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCCEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            111223678876 5999999999999987654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.86  E-value=1.3e-08  Score=84.88  Aligned_cols=159  Identities=8%  Similarity=0.036  Sum_probs=70.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcC---CCCh----hHHHHHHHHhccCcccHH--------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED--------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~---~~~~----~g~~i~~~l~~G~~ip~~--------  140 (268)
                      .+..|+|+|++||||||+++.|+..+ ....+..+...+....   .+..    -.......+..|..+...        
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence            56789999999999999999999987 2112222222221100   0000    011223333333322100        


Q ss_pred             HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeE-EEEe-cCHHHHHhhhhHH-------HHHHHHHHH
Q 024390          141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLV-VNFK-CADNFIVTNRGGS-------LKEKLEAYA  211 (268)
Q Consensus       141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~v-V~Ld-~~~e~l~~Rl~~~-------~~~rl~~y~  211 (268)
                      .....+...+.     .+..+|+|+.+....+   +.+.. ++.+ |++. ++.+++.+|+..+       +.+|+..+.
T Consensus        85 ~~~~~i~~~l~-----~g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~  155 (207)
T 2j41_A           85 TPVQYVKDTMD-----EGHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEAR  155 (207)
T ss_dssp             EEHHHHHHHHH-----TTCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred             CCHHHHHHHHH-----cCCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            00122333333     2467899986554333   23322 3533 3333 5577999998432       333443332


Q ss_pred             HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      ..    ..++...+ ++ |+.+ ++++++++|.+.+....
T Consensus       156 ~~----~~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          156 KE----VEMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             CG----GGGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred             HH----HhccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence            22    12233333 44 4434 89999999999997653

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.85  E-value=1.6e-09  Score=104.21  Aligned_cols=115  Identities=16%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCc-----cchhHHHHhhcCCCChhHHHHHHHHhc-cC---cccHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-----ISMSSIVRQDLSPRSSLHKQIANAVNR-GE---VVSEDIIFGLLS  147 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~-----is~~dlir~~~~~~~~~g~~i~~~l~~-G~---~ip~~~~~~ll~  147 (268)
                      .+..|+|+|.|||||||+|+.|++.++..+     ++.|++.++.......     .+++.. ++   ...+.+....+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~~l~  108 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALAALR  108 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999986544     5778866554322110     011110 00   000112222222


Q ss_pred             ---HHHHcCCccCccEEEEcCCcCCHHHHHHHHhh---cCC-CeEEEEecC-HHHHHhhh
Q 024390          148 ---KRLEDGYYRGEIGFILDGLPRSRIQAEILDQL---AEI-DLVVNFKCA-DNFIVTNR  199 (268)
Q Consensus       148 ---~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~---~~~-d~vV~Ld~~-~e~l~~Rl  199 (268)
                         ..+..   ..+..+|+|+...+..+.+.+.+.   ... -++|++.|+ ++++.+|+
T Consensus       109 ~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri  165 (520)
T 2axn_A          109 DVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI  165 (520)
T ss_dssp             HHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred             HHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence               22221   146789999988887766554332   122 346677777 56666666

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.81  E-value=1.1e-08  Score=85.18  Aligned_cols=157  Identities=13%  Similarity=0.094  Sum_probs=83.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC---CCC----hhHHHHHHHHhccCc------------c
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS---PRS----SLHKQIANAVNRGEV------------V  137 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~---~~~----~~g~~i~~~l~~G~~------------i  137 (268)
                      .+..++|+||+||||||+++.|+..+.-.+++..++-+....   .+.    .-..........+..            .
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            467899999999999999999998864333332222111100   000    000111121111111            1


Q ss_pred             cHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHHHHHHHH
Q 024390          138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLKEKLEAY  210 (268)
Q Consensus       138 p~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~~rl~~y  210 (268)
                      +.+    .+.+.+..     +..+|+|+.+....+..  .....+..++.+..+.+++.+|+.       +.+++|+..+
T Consensus        86 ~~~----~i~~~l~~-----g~~vi~d~~~~~~~~~~--~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~  154 (205)
T 3tr0_A           86 EKD----WVLRQLKA-----GRDVLLEIDWQGARQIR--ELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALA  154 (205)
T ss_dssp             EHH----HHHHHHHT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHH
T ss_pred             hHH----HHHHHHHc-----CCeEEEEECHHHHHHHH--HhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            111    23333332     45788887644333222  222334444444557999999983       3466777665


Q ss_pred             HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      ...    .+++...+ .+.+| + +++++.++|.++|....
T Consensus       155 ~~~----~~~~~~~d-~vi~n-~-~~~~~~~~l~~~i~~~~  188 (205)
T 3tr0_A          155 REE----MAHYKEFD-YLVVN-D-NFDQAVQNLIHIISAER  188 (205)
T ss_dssp             HHH----HTTGGGCS-EEEEC-S-SHHHHHHHHHHHHHHHT
T ss_pred             HHH----HhcccCCC-EEEEC-C-CHHHHHHHHHHHHHHHH
Confidence            433    23333333 33344 3 89999999999997643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.75  E-value=1.2e-07  Score=80.06  Aligned_cols=160  Identities=11%  Similarity=0.097  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcC---CCCh----hHHHHHHHHhccCcccHH--------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED--------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~---~~~~----~g~~i~~~l~~G~~ip~~--------  140 (268)
                      ++..|+|+||+||||||+++.|++.+.- ...+....-|....   .+..    -.....+.+..|..+...        
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            5678999999999999999999998753 22221111111000   0000    012222333333221000        


Q ss_pred             HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhh-------hHHHHHHHHHHHH
Q 024390          141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNR-------GGSLKEKLEAYAE  212 (268)
Q Consensus       141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl-------~~~~~~rl~~y~~  212 (268)
                      .....+.+.+.     .+..+|+|..+....   .+.+......+|++..+ .+++.+|+       ++.+++|+.....
T Consensus        87 ~~~~~i~~~l~-----~g~~vild~~~~g~~---~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~  158 (208)
T 3tau_A           87 TPLEYVEEKLA-----AGVDIFLEIEVQGAM---QVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKK  158 (208)
T ss_dssp             EEHHHHHHHHH-----TTCCEEEECCHHHHH---HHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHH-----cCCeEEEEeeHHHHH---HHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            00122333343     356788887543322   23222222245666655 88999988       3456777766543


Q ss_pred             HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      ..    .++...+ .+.+|  .+.+++.++|.++|....
T Consensus       159 e~----~~~~~~d-~vivN--~~~~~~~~~l~~~i~~~~  190 (208)
T 3tau_A          159 EI----EMMASYD-YAVVN--DVVANAVQKIKGIVETEH  190 (208)
T ss_dssp             HH----HHGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred             HH----HhhccCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence            32    2233233 34444  369999999999997654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.75  E-value=3.6e-08  Score=86.04  Aligned_cols=119  Identities=13%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHh-hcC--CCChhHHHHHH----HH-----hccCcccHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ-DLS--PRSSLHKQIAN----AV-----NRGEVVSEDIIFGLL  146 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~-~~~--~~~~~g~~i~~----~l-----~~G~~ip~~~~~~ll  146 (268)
                      +.|+|+|+|||||||+|+.|+++++..++++|++... ...  ...+.......    .+     ..| .+......+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~   80 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL   80 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence            4789999999999999999999999999999886421 110  00000000000    00     000 12223333344


Q ss_pred             HHHHHcCCccCccEEEEcCCcCCHHHHHHH-Hhh---cCCC-eEEEEecCH-HHHHhhhhHH
Q 024390          147 SKRLEDGYYRGEIGFILDGLPRSRIQAEIL-DQL---AEID-LVVNFKCAD-NFIVTNRGGS  202 (268)
Q Consensus       147 ~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l-~~~---~~~d-~vV~Ld~~~-e~l~~Rl~~~  202 (268)
                      ...+ +. ...+..+|++|-..  ...+.+ ...   ...+ .+|+|++|. +++.+|+..+
T Consensus        81 ~~~i-~~-~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R  138 (253)
T 2ze6_A           81 IFEV-DW-RKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQR  138 (253)
T ss_dssp             HHHH-HT-TTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHH-HH-HhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHH
Confidence            4444 22 12456677765322  222222 220   1122 699999997 9999998543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.66  E-value=2.2e-07  Score=76.60  Aligned_cols=112  Identities=11%  Similarity=-0.017  Sum_probs=61.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      +..++|+|++||||||+++.|++.++. .+++.+++.+.. ..+.-. .       .....+...+.+.+....... ..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~-~-------~~~~~~~~~~~~~l~~~~~~~-~~   71 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRP-P-------WESDELLALTWKNITDLTVNF-LL   71 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCC-G-------GGCHHHHHHHHHHHHHHHHHH-HH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccccc-C-------ccchhHHHHHHHHHHHHHHHH-Hh
Confidence            457899999999999999999998765 788877665432 111000 0       000000111111111111110 01


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh----c-C-CCeEEEEecCHHHHHhhhh
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL----A-E-IDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~----~-~-~d~vV~Ld~~~e~l~~Rl~  200 (268)
                      .+..+|+|++- .....+.+.+.    . . ...+++|+++.+++.+|..
T Consensus        72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~  120 (189)
T 2bdt_A           72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA  120 (189)
T ss_dssp             TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTT
T ss_pred             cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHH
Confidence            23468899852 33322322222    1 1 2346889999999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.60  E-value=1.3e-08  Score=83.84  Aligned_cols=161  Identities=15%  Similarity=0.078  Sum_probs=84.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~  154 (268)
                      .+..|+|+|+|||||||+++.|+..++..  +++.+++.... ..+...+     ++.+.. .+...+.+.+....... 
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~-   79 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY-   79 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchh-hhhHHHHHHHHHHHHHH-
Confidence            56789999999999999999999987554  77777765432 1110000     000000 00111111221111100 


Q ss_pred             ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----H--HHHHHHHHHHchHHHHHHHhCCcEE
Q 024390          155 YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----L--KEKLEAYAELSKPLEDYYQKQKKLL  228 (268)
Q Consensus       155 ~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----~--~~rl~~y~~~~~~l~~~y~~~~~l~  228 (268)
                      ...+..+++|++.... +.+.+......-.++++.++.++++.|+..+    +  ........+...++   +. .+. +
T Consensus        80 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l---~~-~~~-~  153 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL---GA-FEH-H  153 (191)
T ss_dssp             HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCC---GG-GGG-G
T ss_pred             hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhcc---Cc-ccc-c
Confidence            0124457888865431 2222332222335899999999999998211    0  11122222222222   21 112 2


Q ss_pred             EEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          229 EFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       229 ~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      .|+++ .++++++++|.+.+....
T Consensus       154 ~i~t~~~~~~~~~~~i~~~l~~~~  177 (191)
T 1zp6_A          154 VLPVSGKDTDQALQSAINALQSGR  177 (191)
T ss_dssp             EEECTTCCTTTTTTTTHHHHHHTT
T ss_pred             EEECCCCCHHHHHHHHHHHHHhhh
Confidence            45554 689999999999987543

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.57  E-value=9e-08  Score=87.05  Aligned_cols=30  Identities=10%  Similarity=-0.092  Sum_probs=27.2

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +.+++.|+|.|+.||||||+++.|++.++.
T Consensus         4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            357899999999999999999999999865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.53  E-value=2.4e-07  Score=89.59  Aligned_cols=161  Identities=16%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHhhcCCCChhHH-HHHHHHhccCcccHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRSSLHK-QIANAVNRGEVVSEDIIFGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~------~~~is~~dlir~~~~~~~~~g~-~i~~~l~~G~~ip~~~~~~ll~~~  149 (268)
                      ++..|+|+|++||||||+++.|+..++      +.+++.+++... +.....+.. ......        .. ...+.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~--------r~-i~~v~q~  437 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNV--------RR-IGFVASE  437 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHH--------HH-HHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHH--------HH-HHHHHHH
Confidence            678899999999999999999999985      334666555432 211100000 000000        00 1112122


Q ss_pred             HHcCCccCccEEEEcC-CcCCHHHHHHHHhhcCCC--eEEEEecCHHHHHhhhhHHH-H-HHHHHHHHHchHHHHHHHhC
Q 024390          150 LEDGYYRGEIGFILDG-LPRSRIQAEILDQLAEID--LVVNFKCADNFIVTNRGGSL-K-EKLEAYAELSKPLEDYYQKQ  224 (268)
Q Consensus       150 l~~~~~~~~~g~IlDG-fPr~~~qa~~l~~~~~~d--~vV~Ld~~~e~l~~Rl~~~~-~-~rl~~y~~~~~~l~~~y~~~  224 (268)
                      +..    .+..++..+ .|.........+.+...+  ++|+|++|.|++.+|..... . .+.....+.......||...
T Consensus       438 l~~----~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~  513 (552)
T 3cr8_A          438 ITK----NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPE  513 (552)
T ss_dssp             HHH----TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCS
T ss_pred             HHh----cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCC
Confidence            221    233444444 332221111111112233  79999999999999973211 0 01001111111011223211


Q ss_pred             CcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390          225 KKLLEFQVG-SAPVETWQGLLTALHLQH  251 (268)
Q Consensus       225 ~~l~~Ida~-~s~eev~~~I~~~L~~~~  251 (268)
                      .--+.||++ .+++++.++|.+.|....
T Consensus       514 ~adl~Idt~~~s~~e~v~~Il~~L~~~~  541 (552)
T 3cr8_A          514 TPELAIDTTGLAIDEAVQQILLKLEHEG  541 (552)
T ss_dssp             SCSEEECCSSCCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            112567765 789999999999997654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.50  E-value=1.3e-06  Score=73.04  Aligned_cols=38  Identities=18%  Similarity=0.272  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVR  114 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir  114 (268)
                      .+.+|.|.|++||||||+++.|+..++  +.+++.+..++
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            567899999999999999999999998  88888776554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.48  E-value=2.2e-06  Score=70.38  Aligned_cols=160  Identities=18%  Similarity=0.120  Sum_probs=78.0

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCC-C--ccchhHH-HHhhcCCCCh----hHHHHHHHHhccCcccHH------
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-P--RISMSSI-VRQDLSPRSS----LHKQIANAVNRGEVVSED------  140 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~-~--~is~~dl-ir~~~~~~~~----~g~~i~~~l~~G~~ip~~------  140 (268)
                      |.++..++|+||+||||||+++.|+..+.- .  .++...- .+.....+..    -...+...+..+..+...      
T Consensus         2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~   81 (180)
T 1kgd_A            2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAM   81 (180)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcc
Confidence            456778999999999999999999987631 0  1110000 0000000000    011222333333222100      


Q ss_pred             --HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhhhHHHHHHHHHHHHHchHH
Q 024390          141 --IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRGGSLKEKLEAYAELSKPL  217 (268)
Q Consensus       141 --~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl~~~~~~rl~~y~~~~~~l  217 (268)
                        .....+.+.+.     .+..+|+|.-+....   .+.+......+||+..| .+.+.+| ++.+ +|+..   ...++
T Consensus        82 yg~~~~~i~~~l~-----~g~~vil~id~~g~~---~~~~~~~~~~~ifi~~p~~~~l~~R-~~~i-~r~~~---~~~~~  148 (180)
T 1kgd_A           82 YGTKLETIRKIHE-----QGLIAILDVEPQALK---VLRTAEFAPFVVFIAAPTITPGLNE-DESL-QRLQK---ESDIL  148 (180)
T ss_dssp             EEEEHHHHHHHHH-----TTCEEEEECCGGGHH---HHSSTTTCEEEEEEECCSCCTTSCC-SHHH-HHHHH---HHHHH
T ss_pred             ccccHHHHHHHHH-----CCCeEEEEECHHHHH---HHHHhCCCcEEEEEECCCHHHHHhh-HHHH-HHHHH---HHHHH
Confidence              00112233333     256678875443322   23222222478899876 6666666 5555 44422   22233


Q ss_pred             HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ...|...-..+.+| + +.++..+++.++|..
T Consensus       149 ~~~~~~~~d~~i~n-~-~~~~~~~~l~~~i~~  178 (180)
T 1kgd_A          149 QRTYAHYFDLTIIN-N-EIDETIRHLEEAVEL  178 (180)
T ss_dssp             HHHHGGGCSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred             HHhhhCCCcEEEEC-c-CHHHHHHHHHHHHHH
Confidence            22233222233333 3 799999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.40  E-value=4.2e-07  Score=82.65  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl  112 (268)
                      +++.|+|+||+||||||++..||++++..+||+|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            446899999999999999999999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.39  E-value=1.1e-06  Score=73.34  Aligned_cols=156  Identities=10%  Similarity=0.010  Sum_probs=85.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhc---CCCCh----hHHHHHHHHhccCcccHH--------HHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDL---SPRSS----LHKQIANAVNRGEVVSED--------IIFG  144 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~---~~~~~----~g~~i~~~l~~G~~ip~~--------~~~~  144 (268)
                      |+|+||+||||+|+++.|.+.+.- ..+++.-.-|..-   ..+..    ..+...+.+.+|+.+...        ....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~   83 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence            899999999999999999887632 2222211111110   01111    134455566666543210        0122


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHHch
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELSK  215 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~~~  215 (268)
                      -+.+.+.+     +..+|+|.-+..   +..+.+..  .+..++.+--+.+++.+|+       ++.+++|+........
T Consensus        84 ~v~~~l~~-----g~~vil~id~~g---~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~  155 (186)
T 1ex7_A           84 SVKQVSKS-----GKTCILDIDMQG---VKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA  155 (186)
T ss_dssp             HHHHHHHH-----TSEEEEECCHHH---HHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhC-----CCEEEecCCHHH---HHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence            23334443     567888865332   33344432  3344555566678999998       4567888876654432


Q ss_pred             HHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          216 PLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       216 ~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ...  ....+ .+.+|  .+.++.+++|.++|..
T Consensus       156 ~~~--~~~fD-~vIvN--ddle~a~~~l~~iI~a  184 (186)
T 1ex7_A          156 YAE--TGAHD-KVIVN--DDLDKAYKELKDFIFA  184 (186)
T ss_dssp             HHT--TTCSS-EEEEC--SSHHHHHHHHHHHHTT
T ss_pred             hcc--ccCCc-EEEEC--cCHHHHHHHHHHHHHh
Confidence            110  00112 33443  5799999999998853

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.38  E-value=1.1e-06  Score=74.34  Aligned_cols=156  Identities=8%  Similarity=0.058  Sum_probs=89.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHhhcC--CCChh-------------HHHHHHH----HhccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLS--PRSSL-------------HKQIANA----VNRGE  135 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dlir~~~~--~~~~~-------------g~~i~~~----l~~G~  135 (268)
                      .++|+|.|.|||||+|+|+.|.+.+|   +..++++|.++++..  .+-++             ++.+...    ...|.
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~   90 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   90 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence            46899999999999999999999885   678999999986321  11000             0011100    00010


Q ss_pred             cccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCC-CeEEEEecCHHHHHhhhhHHHHHHHHHHHHHc
Q 024390          136 VVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEI-DLVVNFKCADNFIVTNRGGSLKEKLEAYAELS  214 (268)
Q Consensus       136 ~ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~-d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~  214 (268)
                      .+        ..+.....  .....|||||. |....++.|.+..+. -.+|.+.+++++..+|.......+- ..... 
T Consensus        91 ~~--------~~~~~~~~--~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~esE-  157 (202)
T 3ch4_B           91 GF--------FCRKIVEG--ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAESE-  157 (202)
T ss_dssp             TT--------THHHHSBT--CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSHHH-
T ss_pred             hH--------HHHHHHHh--cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcccccc-ccccc-
Confidence            00        01111111  13457999997 777888888875332 3479999999999999611000000 00000 


Q ss_pred             hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      -.+-+ + ...-++ |+.+.+.+|+.++|..++..
T Consensus       158 ~gL~~-~-~~~D~v-I~Ndgt~eel~~~v~~ll~~  189 (202)
T 3ch4_B          158 CGLDN-F-GDFDWV-IENHGVEQRLEEQLENLIEF  189 (202)
T ss_dssp             HTTTT-C-CCCSEE-EEECSCHHHHHHHHHHHHHH
T ss_pred             cCCCC-C-CcCCEE-EEeCCCHHHHHHHHHHHHHH
Confidence            01111 1 122344 44477999999988887754

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.38  E-value=2.5e-06  Score=76.39  Aligned_cols=165  Identities=8%  Similarity=0.027  Sum_probs=90.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ..++.|+|.|..||||+|+++.|.+.++-..+.+       ..-..+.+..+.      ..        ++ .+....-.
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V-------~~~~~Pt~eE~~------~~--------yl-~R~~~~LP  141 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARV-------VALTKPTETERG------QW--------YF-QRYVATFP  141 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEE-------EECCSCCHHHHT------SC--------TT-HHHHTTCC
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeE-------EEeCCcChHHHh------ch--------HH-HHHHHhcc
Confidence            3578999999999999999999999986443221       000111122221      11        11 22222211


Q ss_pred             cCccEEEEcCCcCC------------H-------HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH--------
Q 024390          156 RGEIGFILDGLPRS------------R-------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK--------  204 (268)
Q Consensus       156 ~~~~g~IlDGfPr~------------~-------~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~--------  204 (268)
                      ..+.-+|+|.+..+            .       .+...|++.    +.+++.|||+++.++-.+|+.++..        
T Consensus       142 ~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~  221 (304)
T 3czq_A          142 TAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKL  221 (304)
T ss_dssp             CTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGC
T ss_pred             cCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCC
Confidence            23455677754321            1       122333322    3688999999999999999843321        


Q ss_pred             --------HHHHHHHHHchHHHHHHH-hCCcEEEEeCCCCH---HHHHHHHHHHHHhhccc----ccCChHHHh
Q 024390          205 --------EKLEAYAELSKPLEDYYQ-KQKKLLEFQVGSAP---VETWQGLLTALHLQHIN----AAYSSQELM  262 (268)
Q Consensus       205 --------~rl~~y~~~~~~l~~~y~-~~~~l~~Ida~~s~---eev~~~I~~~L~~~~~~----~~~~~~~~~  262 (268)
                              ++++.|.+....+...-+ ....+++|+++...   -.+.+.|.+.|.....+    ..++++++.
T Consensus       222 s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~~~~~~~~~~~~~~~~~  295 (304)
T 3czq_A          222 SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGKDEAAIGEVDEKILG  295 (304)
T ss_dssp             CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCTTCCHHHHCCCCTTTEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhccCCccccCCCCccccc
Confidence                    222334433333332211 12369999998754   55666666666544322    245554443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.37  E-value=8.1e-06  Score=70.29  Aligned_cols=30  Identities=20%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      ..+.+|.|.|+.||||||+++.|+..+|..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            467789999999999999999999998865

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.36  E-value=1.2e-06  Score=82.91  Aligned_cols=116  Identities=14%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC-----ccchhHHHHhhcCCCChhHHHHHHHHhc-cCc---ccHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQDLSPRSSLHKQIANAVNR-GEV---VSEDIIFGLL  146 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~-----~is~~dlir~~~~~~~~~g~~i~~~l~~-G~~---ip~~~~~~ll  146 (268)
                      .++.+|+|+|.|||||||+++.|++.++..     .++.+++.++........     +++.. |+.   .-+......+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence            356789999999999999999999987643     444555444422110000     00110 100   0011111222


Q ss_pred             ---HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cC-CCeEEEEe---cCHHHHHhhh
Q 024390          147 ---SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AE-IDLVVNFK---CADNFIVTNR  199 (268)
Q Consensus       147 ---~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~-~d~vV~Ld---~~~e~l~~Rl  199 (268)
                         ...+..   ..+.++|+|+.-.+..+.+.+.+. .. ...+++|+   .+++.+.+|+
T Consensus       112 ~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~  169 (469)
T 1bif_A          112 NDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI  169 (469)
T ss_dssp             HHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred             HHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence               223322   246689999987777665554322 11 12356666   4466776665

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.28  E-value=1.4e-06  Score=72.95  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+|.|+|++||||||+++.|+..+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999876

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.23  E-value=1.6e-06  Score=78.97  Aligned_cols=29  Identities=17%  Similarity=0.038  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYA-EMLSKLLEV  104 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a-~~La~~l~~  104 (268)
                      .+++.|+|.|+.||||||++ +.|++.++-
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            46789999999999999999 999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.21  E-value=9.8e-06  Score=68.92  Aligned_cols=27  Identities=22%  Similarity=0.124  Sum_probs=18.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH-HHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLS-KLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La-~~l  102 (268)
                      ..+..++|+||+||||||+++.|+ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            356789999999999999999999 765

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.18  E-value=1.8e-06  Score=78.44  Aligned_cols=28  Identities=14%  Similarity=0.013  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+++.|+|.|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3678999999999999999999999875

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.11  E-value=1.7e-05  Score=72.97  Aligned_cols=28  Identities=14%  Similarity=0.013  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+++.|+|.|+.||||||+++.|++.++
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5788999999999999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.97  E-value=2.5e-06  Score=77.13  Aligned_cols=37  Identities=24%  Similarity=0.166  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli  113 (268)
                      .++.|+|+||+||||||+++.|+++++..+||+|++.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q   40 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL   40 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence            3458999999999999999999999999999997653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.89  E-value=0.00011  Score=61.79  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++..|+|+||+||||||+++.|.+.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4667899999999999999999998875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.83  E-value=1e-05  Score=73.15  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI  112 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dl  112 (268)
                      .++.+|.|+|++||||||+++.|+..++       +..+++++.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            4667899999999999999999999875       334666654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.80  E-value=3.9e-06  Score=74.61  Aligned_cols=38  Identities=13%  Similarity=0.152  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir  114 (268)
                      ++++|.|.|++||||||+|+.|++.+|     +.+|++|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            456899999999999999999999887     78899998875

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.76  E-value=0.00019  Score=68.48  Aligned_cols=166  Identities=13%  Similarity=0.082  Sum_probs=79.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCc---cchhHHHHhhcCCCChhHHHHHHHHhccCcc--cHHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR---ISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL  150 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~---is~~dlir~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ll~~~l  150 (268)
                      ..++.|+|.|.+||||+++++.|.+.++-..   +.+..=-.++. ...-+.......-..|+.+  .......++..++
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~-~~~yl~R~~~~lP~~G~IvIfdRSwYs~~~v~rv  119 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL-ERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYARV  119 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH-TSCTTHHHHHHCCCTTCEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc-cCChhhhHHHhCCCCCeEEEEeCchhhHHHHHHH
Confidence            4779999999999999999999999985432   22210000000 0001111111111122211  1111112222221


Q ss_pred             HcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH----------------HHHHHH
Q 024390          151 EDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK----------------EKLEAY  210 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~----------------~rl~~y  210 (268)
                      ... |.  .    +-+-....+...|++.    +.+++.+||++|.++..+|+.++..                ++++.|
T Consensus       120 ~g~-~~--~----~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y  192 (500)
T 3czp_A          120 EGH-IK--E----AKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRF  192 (500)
T ss_dssp             TTS-SC--H----HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHHHHHH
T ss_pred             hcC-CC--H----HHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHH
Confidence            110 00  0    0000011233334332    4678999999999999999944321                334445


Q ss_pred             HHHchHHHHHHHh-CCcEEEEeCCC---CHHHHHHHHHHHHHh
Q 024390          211 AELSKPLEDYYQK-QKKLLEFQVGS---APVETWQGLLTALHL  249 (268)
Q Consensus       211 ~~~~~~l~~~y~~-~~~l~~Ida~~---s~eev~~~I~~~L~~  249 (268)
                      .+........-+. ...+++|+++.   ....+.+.|.+.|..
T Consensus       193 ~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~  235 (500)
T 3czp_A          193 VHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQA  235 (500)
T ss_dssp             HHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHH
Confidence            4443333322111 12589999876   345566666666653

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.73  E-value=1.9e-05  Score=68.52  Aligned_cols=39  Identities=13%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~  117 (268)
                      ++|.|.|++||||||+++.|++.+|++++++++.+++++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~   40 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence            579999999999999999999999999999998887764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.72  E-value=1.1e-05  Score=73.43  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=31.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl  112 (268)
                      +.|+|+||+||||||+|..|++.++..+||+|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            5799999999999999999999999989998876

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.71  E-value=0.00025  Score=67.69  Aligned_cols=149  Identities=11%  Similarity=0.043  Sum_probs=85.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~---~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      ..++.|+|.|..||||+++.+.|.+.++-.   ++.+.          .|.....      +..        .+. +...
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~~--------yl~-R~~~  352 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQP--------YLW-RFWR  352 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TSC--------TTH-HHHT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cch--------HHH-HHHH
Confidence            478899999999999999999999988533   33221          1111111      111        111 2222


Q ss_pred             CCccCccEEEEcCCcCC------------H-------HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH-----
Q 024390          153 GYYRGEIGFILDGLPRS------------R-------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK-----  204 (268)
Q Consensus       153 ~~~~~~~g~IlDGfPr~------------~-------~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~-----  204 (268)
                      +....+.-+|+|.+..+            .       .+...|++.    +.+++.+||++|.++-.+|+.++..     
T Consensus       353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~  432 (500)
T 3czp_A          353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR  432 (500)
T ss_dssp             TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred             hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            22223445677754322            1       122333322    4578999999999999999954322     


Q ss_pred             -----------HHHHHHHHHchHHHHHHHhC-CcEEEEeCCC---CHHHHHHHHHHHHHh
Q 024390          205 -----------EKLEAYAELSKPLEDYYQKQ-KKLLEFQVGS---APVETWQGLLTALHL  249 (268)
Q Consensus       205 -----------~rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~---s~eev~~~I~~~L~~  249 (268)
                                 ++.+.|.+........-+.. ..+++|+++.   ..-.|.+.|.+.|..
T Consensus       433 Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~  492 (500)
T 3czp_A          433 YKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA  492 (500)
T ss_dssp             SCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence                       33445555444443322222 3589999876   345566666666654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.63  E-value=2.2e-05  Score=70.62  Aligned_cols=35  Identities=29%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      .++.|+|+||+||||||++..|+++++..+||.|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            45689999999999999999999999988888765

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.62  E-value=1.7e-05  Score=72.57  Aligned_cols=30  Identities=27%  Similarity=0.340  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ..+.|+|+|+|||||||+++.|++.+++.+
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            345799999999999999999999999877

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.62  E-value=2.2e-05  Score=70.66  Aligned_cols=35  Identities=29%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl  112 (268)
                      ++.|+|.||+||||||++..|++.++..+||.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            46799999999999999999999999888888765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.58  E-value=2.9e-05  Score=74.35  Aligned_cols=29  Identities=10%  Similarity=0.054  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      ..++.|+|+|.+||||||+|+.|+++++.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            36689999999999999999999999986

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.54  E-value=5e-05  Score=67.27  Aligned_cols=38  Identities=13%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR  114 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir  114 (268)
                      .+..++|.||||+|||++|+.||+.+|.+++  +.+++..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~   74 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES   74 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence            3456888899999999999999999987654  5555543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.46  E-value=5.3e-05  Score=63.41  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS  111 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~d  111 (268)
                      ..+.+|.|+|++||||||+++.|+..+.     ..+|+.++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            4678999999999999999999999875     44555543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.41  E-value=0.00013  Score=59.32  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchhHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVRQ  115 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l----~--~~~is~~dlir~  115 (268)
                      .+..++|.||||+||||+++.++..+    |  +.+++..+++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            46679999999999999999998876    3  345566555543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.40  E-value=0.0012  Score=53.38  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH----HHHHHHHHHHHc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED----IIFGLLSKRLED  152 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~----~~~~ll~~~l~~  152 (268)
                      .+-.+.|+|++||||||+++.+..  +...++. +.++..+.+..            |......    .........+. 
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-   71 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQ-   71 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHh-
Confidence            677899999999999999998652  3444444 34444332211            1111111    11111222222 


Q ss_pred             CCccCccEEEEcCCcCCHH-HHH--HHHh-hcCCCeEEEEecCHHHHHhhh
Q 024390          153 GYYRGEIGFILDGLPRSRI-QAE--ILDQ-LAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       153 ~~~~~~~g~IlDGfPr~~~-qa~--~l~~-~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                          .+...++|....... |.+  .+-. +...-.+++||.|...+-.|.
T Consensus        72 ----~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~  118 (171)
T 4gp7_A           72 ----LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN  118 (171)
T ss_dssp             ----TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred             ----CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence                234456666443322 222  2222 222234899999999888774

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=7.7e-05  Score=69.89  Aligned_cols=30  Identities=13%  Similarity=0.206  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      -|++.||||+|||++|+.+|..+|.+++.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            499999999999999999999999876554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.36  E-value=9.3e-05  Score=69.49  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli  113 (268)
                      .-|++.||||+|||++|+.||..+|.+++.+  ++++
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~  252 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV  252 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence            3499999999999999999999999876544  4444

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0001  Score=68.47  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV  113 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli  113 (268)
                      -|++.||||+|||.+|+.+|...+.+++++  .+++
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  219 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV  219 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred             ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence            389999999999999999999999876554  4444

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.36  E-value=8.9e-05  Score=69.55  Aligned_cols=35  Identities=14%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli  113 (268)
                      .-|++.||||+|||++|+.+|...|.+++.+  .+++
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  252 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV  252 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             CeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence            4599999999999999999999999876544  4444

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.31  E-value=8.2e-05  Score=69.13  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=30.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      +.|+|.||+||||||++..|++.++..+||+|.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            478999999999999999999999988888875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.29  E-value=0.00016  Score=61.95  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +.-++|.|+||+|||++++.+++.++.+++.+
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            34589999999999999999999998776543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.28  E-value=0.00017  Score=62.03  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      -++|.|+||+||||+++.|+..++.+.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            499999999999999999999998765543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.25  E-value=0.00027  Score=56.31  Aligned_cols=25  Identities=16%  Similarity=0.027  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.|++|+||||+++.++..+
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.25  E-value=0.00016  Score=64.40  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI  112 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dl  112 (268)
                      .++.+|.|+|++||||||+++.|+..++       +..|++++.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            4678899999999999999999999876       445566653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.23  E-value=0.00019  Score=65.17  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +..|+|.||||+|||++|+.|++.++.+++.+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            34599999999999999999999998877654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.20  E-value=0.00018  Score=63.16  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      ++|+||||+||||+++.|+..++...+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999998765443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0002  Score=66.95  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli  113 (268)
                      .-|++.||||+|||.+|+.+|...+.+++.+  .+++
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~  253 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI  253 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred             CCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence            3499999999999999999999999876554  3444

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.17  E-value=0.00021  Score=67.15  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      +..|+|+||||+||||+|+.||+.++.+++.++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            345999999999999999999999999887664

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.17  E-value=0.00019  Score=63.52  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHhh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQD  116 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~~  116 (268)
                      +..|+|.||||+|||++|+.|++.++..++  +..+++...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~   89 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   89 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence            345999999999999999999999987654  444665443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.17  E-value=0.00021  Score=62.16  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +..++|.||||+|||++++.+++.++.+++.+
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34599999999999999999999998765443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.00018  Score=67.91  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli  113 (268)
                      .-|++.||||+|||++|+.+|...+.+++.+  .+++
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~  280 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV  280 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             CceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence            3489999999999999999999999876544  4444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.16  E-value=0.00027  Score=61.31  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .+..++|.|+||+|||++|+.+++..+.+++.+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            345699999999999999999999998876544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.15  E-value=0.00023  Score=58.56  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +++.|+|++||||||+.+.|+..++
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999999886

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.15  E-value=0.00021  Score=62.65  Aligned_cols=31  Identities=13%  Similarity=0.186  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      +..++|.||||+|||++++.+++.++.+++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            4469999999999999999999999865543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.12  E-value=0.00027  Score=62.15  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|.|+||+|||++|+.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999999987

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.09  E-value=0.00025  Score=59.83  Aligned_cols=35  Identities=17%  Similarity=-0.004  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      ..+..|+|+|++||||||+|..|+++.+ ..|+.|.
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            3567899999999999999999999877 7777654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.06  E-value=0.00032  Score=61.35  Aligned_cols=30  Identities=30%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +..++|.|+||+|||++++.+++.++.+++
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            345899999999999999999999987654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.06  E-value=0.00037  Score=59.74  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++|+||||+||||+++.|+...+...+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            99999999999999999999887655443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.03  E-value=0.00035  Score=63.60  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +..++|.|+||+|||++|+.|++.++.+++.+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~  103 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS  103 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            34599999999999999999999998766544

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.01  E-value=0.00036  Score=62.29  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR  114 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir  114 (268)
                      +..++|.||||+|||++|+.+++..+.+++  +..+++.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~   89 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS   89 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence            346999999999999999999999987654  4445543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.01  E-value=0.00048  Score=61.10  Aligned_cols=38  Identities=13%  Similarity=0.074  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCcc-chhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRI-SMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~i-s~~dli  113 (268)
                      .++.+|.|.|++||||||+++.|++.++       ...+ +.++.+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            4678899999999999999999999875       3345 776654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.00  E-value=0.00049  Score=55.02  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.|+||+|||++++.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999999986

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.98  E-value=0.0002  Score=61.76  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=25.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++|.|+||+|||++|+.|++.++.+++.+
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            88999999999999999999998765544

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=96.98  E-value=0.0079  Score=53.15  Aligned_cols=156  Identities=9%  Similarity=0.006  Sum_probs=86.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ..++.|+|.|..||||+++.+.|.+.++-..+.+-.     +...+  ..              +..-..+ .|....-.
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a-----~~~Pt--~e--------------E~~~~yl-wR~~~~lP  130 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTA-----FKAPT--DE--------------EKSHDFL-WRIEKQVP  130 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE-----CCSCC--HH--------------HHTSCTT-HHHHTTCC
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEE-----CCCCC--hh--------------hhcCCHH-HHHHHhCC
Confidence            367899999999999999999999998643332210     01000  00              0000011 11222211


Q ss_pred             cCccEEEEcCCcCC-------------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------
Q 024390          156 RGEIGFILDGLPRS-------------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------  202 (268)
Q Consensus       156 ~~~~g~IlDGfPr~-------------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------  202 (268)
                      ..+.-.|+|+...+                   ..+...|++.    +..-+-+||+++.++-.+|+.++          
T Consensus       131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~  210 (289)
T 3rhf_A          131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKY  210 (289)
T ss_dssp             CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGC
T ss_pred             CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccC
Confidence            23444566643221                   1233444442    23345699999999999998332          


Q ss_pred             ----H--HHHHHHHHHHchHHHHHHHh-CCcEEEEeCCCCHHH---HHHHHHHHHHhhccc
Q 024390          203 ----L--KEKLEAYAELSKPLEDYYQK-QKKLLEFQVGSAPVE---TWQGLLTALHLQHIN  253 (268)
Q Consensus       203 ----~--~~rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~s~ee---v~~~I~~~L~~~~~~  253 (268)
                          +  .++.+.|.+....+...-+. ..-+++|+++...-.   |.+.|++.|...++.
T Consensus       211 s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~~  271 (289)
T 3rhf_A          211 SRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQLD  271 (289)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence                2  23345565554444433222 235999998765443   777777777766543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.98  E-value=0.00037  Score=57.91  Aligned_cols=27  Identities=15%  Similarity=-0.004  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..++|+||+||||||+.+.|...+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            345799999999999999999998663

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.97  E-value=0.0065  Score=53.92  Aligned_cols=156  Identities=8%  Similarity=0.061  Sum_probs=80.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcC---CCCh-----hHHHHHHHHhccCcccHH-------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS-----LHKQIANAVNRGEVVSED-------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~---~~~~-----~g~~i~~~l~~G~~ip~~-------  140 (268)
                      ++..|+|+||   ||+|+.+.|.+.+.- ..++....-|..-.   .+..     ..+.....+.+|+.+...       
T Consensus       104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y  180 (295)
T 1kjw_A          104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY  180 (295)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence            4556889998   799999999987631 11111111111100   0100     234455556666543110       


Q ss_pred             -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecC-HHHHHhhh-----hHHHHHHHHHHHH
Q 024390          141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCA-DNFIVTNR-----GGSLKEKLEAYAE  212 (268)
Q Consensus       141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~-~e~l~~Rl-----~~~~~~rl~~y~~  212 (268)
                       +-..-+.+.+.     .+..+|+|.-+....+   +... ..| ++||+..| .+++.+ +     ++.+++|++...+
T Consensus       181 Gt~~~~V~~~~~-----~G~~vildid~~g~~~---l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~~~i~~rl~~a~~  250 (295)
T 1kjw_A          181 GTSVQSVREVAE-----QGKHCILDVSANAVRR---LQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRATK  250 (295)
T ss_dssp             EEEHHHHHHHHH-----TTCEEEECCCTTHHHH---HHHTTCCC-EEEEECCSSHHHHHH-HCTTSCHHHHHHHHHHHHH
T ss_pred             eeeHHHHHHHHh-----cCCeEEEEeCHHHHHH---HHhcccCC-eEEEEECCCHHHHHH-HHhcCCHHHHHHHHHHHHH
Confidence             01122333333     3577899876443322   3222 234 78888877 444443 5     3456677765532


Q ss_pred             HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      .  . .++....+. + |. +.+.++.+++|.++|....
T Consensus       251 ~--e-~~~~~~fd~-v-iv-Nd~le~a~~~l~~ii~~~~  283 (295)
T 1kjw_A          251 L--E-QEFTECFSA-I-VE-GDSFEEIYHKVKRVIEDLS  283 (295)
T ss_dssp             H--H-HHHGGGCSE-E-EC-CSSHHHHHHHHHHHHHHHS
T ss_pred             H--H-HhccccCeE-E-EE-CcCHHHHHHHHHHHHHhcc
Confidence            1  1 112222222 2 33 3489999999999997653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.96  E-value=0.00034  Score=55.98  Aligned_cols=25  Identities=20%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.|+||+|||++++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.95  E-value=0.00058  Score=56.25  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR  114 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir  114 (268)
                      ..++|.|+||+|||++++.++..+   +.  .+++..+++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            569999999999999999999876   33  2355555543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.93  E-value=0.0093  Score=53.50  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.++|.|+||+||||+++.+++.+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.89  E-value=0.00061  Score=56.92  Aligned_cols=35  Identities=6%  Similarity=-0.085  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI  112 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dl  112 (268)
                      +..++|.|+||+||||+++.+++.++     +.+++..++
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            45699999999999999999998764     245555443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.85  E-value=0.00068  Score=60.93  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ..++|.||||+||||+++.|+..++...
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            3589999999999999999999987643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.84  E-value=0.00051  Score=62.39  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR  114 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir  114 (268)
                      -|+|.||||+|||++|+.+++.++.+++  +..+++.
T Consensus        86 ~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~  122 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS  122 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence            4899999999999999999999987654  4445543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.84  E-value=0.0006  Score=61.11  Aligned_cols=28  Identities=14%  Similarity=0.125  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-CCCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL-EVPR  106 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l-~~~~  106 (268)
                      .-|+|.||||+|||++|+.+++.+ +..+
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~~~~~~   74 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEANNSTF   74 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred             ceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence            458999999999999999999988 5544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.82  E-value=0.00062  Score=59.28  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=25.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++|+||||+||||+++.|+...+...+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            99999999999999999999887655443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.81  E-value=0.00067  Score=63.67  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~--~~~is~  109 (268)
                      ..++|.||||+|||++|+.+|+.++  ++++.+
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            4599999999999999999999998  555443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.80  E-value=0.00089  Score=53.89  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.|.+..+|+|+|++|+||||+.+.|...
T Consensus         2 ~~~~~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            2 GSHMKSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CCCCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44556789999999999999999999863

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.79  E-value=0.00071  Score=61.41  Aligned_cols=31  Identities=13%  Similarity=0.141  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      +..|+|.|+||+|||++|+.+++.++.+++.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            4569999999999999999999999876543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.77  E-value=0.0008  Score=59.97  Aligned_cols=31  Identities=19%  Similarity=0.181  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ..++|.|+||+|||++|+.+++.++.+++.+
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            3489999999999999999999998876554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.75  E-value=0.00084  Score=52.76  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .|+|.|+||+|||++|+.|++..
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.73  E-value=0.00079  Score=56.79  Aligned_cols=26  Identities=12%  Similarity=0.015  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|+||+||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            56679999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.73  E-value=0.00093  Score=61.51  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      .+..++|.|||||||||+++.|+..++...+.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            56689999999999999999999988765544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.72  E-value=0.00096  Score=55.53  Aligned_cols=28  Identities=14%  Similarity=0.122  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+..+.|+||.||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4677899999999999999999998774

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.72  E-value=0.0011  Score=59.31  Aligned_cols=27  Identities=26%  Similarity=0.176  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+.+|.|+|++||||||+++.|+..+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            577899999999999999999999876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.69  E-value=0.00083  Score=56.87  Aligned_cols=32  Identities=9%  Similarity=0.168  Sum_probs=25.6

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      .|+ ...++|.||||+||||+|..|++.++-..
T Consensus        55 iPk-kn~ili~GPPGtGKTt~a~ala~~l~g~i   86 (212)
T 1tue_A           55 TPK-KNCLVFCGPANTGKSYFGMSFIHFIQGAV   86 (212)
T ss_dssp             CTT-CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred             CCc-ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            443 34599999999999999999999875433

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.68  E-value=0.001  Score=56.41  Aligned_cols=156  Identities=12%  Similarity=0.082  Sum_probs=79.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC--C--ccchhH-HHHhhcCCCCh----hHHHHHHHHhcc----------Cc-
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV--P--RISMSS-IVRQDLSPRSS----LHKQIANAVNRG----------EV-  136 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~--~--~is~~d-lir~~~~~~~~----~g~~i~~~l~~G----------~~-  136 (268)
                      .+..++|+||.||||||+.+.|+..+..  .  .++... -.+.....+..    ...........|          .. 
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            6778999999999999999999987641  1  111100 00100000000    011122222211          11 


Q ss_pred             -ccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEe-cCHHHHHhhh-------hHHHHHHH
Q 024390          137 -VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK-CADNFIVTNR-------GGSLKEKL  207 (268)
Q Consensus       137 -ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld-~~~e~l~~Rl-------~~~~~~rl  207 (268)
                       .+.+.    +.+.+.     .+.-+|+|.-   ...+..+.+...-..+|++. -+.+.+.+|+       ++.+.+|+
T Consensus        95 g~~~~~----v~~~l~-----~G~illLDLD---~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl  162 (219)
T 1s96_A           95 GTSREA----IEQVLA-----TGVDVFLDID---WQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRM  162 (219)
T ss_dssp             EEEHHH----HHHHHT-----TTCEEEEECC---HHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             CCCHHH----HHHHHh-----cCCeEEEEEC---HHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence             12222    233333     2567899933   33333333332223445544 4667888887       34566777


Q ss_pred             HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          208 EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       208 ~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      .......    .++...+ .+.+|  .+.++.++++.++|....
T Consensus       163 ~~a~~e~----~~~~~~d-~~i~N--d~l~~a~~~l~~ii~~~~  199 (219)
T 1s96_A          163 AQAVAEM----SHYAEYD-YLIVN--DDFDTALTDLKTIIRAER  199 (219)
T ss_dssp             HHHHHHH----TTGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----hhccCCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence            5443322    1222222 33343  589999999999997654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.66  E-value=0.00092  Score=61.23  Aligned_cols=32  Identities=13%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +..|+|.|+||+|||++|+.+++.++.+++.+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            45699999999999999999999998766543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.64  E-value=0.0012  Score=54.64  Aligned_cols=28  Identities=21%  Similarity=0.041  Sum_probs=23.9

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.| ++..++|.|+|||||||++..|+..
T Consensus        16 gi~-~G~~~~i~G~~GsGKTtl~~~l~~~   43 (220)
T 2cvh_A           16 GFA-PGVLTQVYGPYASGKTTLALQTGLL   43 (220)
T ss_dssp             SBC-TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCc-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            444 6778999999999999999999873

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.64  E-value=0.0011  Score=55.21  Aligned_cols=26  Identities=15%  Similarity=0.104  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-.+.|+|++||||||+++.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            77889999999999999999998743

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.63  E-value=0.0013  Score=54.77  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=23.6

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.+ ++-.++|.|++||||||+++.|+..
T Consensus        19 gi~-~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           19 GIP-QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             SEE-TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCc-CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            344 6678999999999999999999854

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.63  E-value=0.0012  Score=62.55  Aligned_cols=29  Identities=21%  Similarity=0.367  Sum_probs=26.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      |+|.||||+|||++++.++...+.+++.+
T Consensus        52 vLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            89999999999999999999998876544

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.63  E-value=0.0015  Score=58.20  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++|.||||+||||+++.+++.++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.59  E-value=0.0013  Score=57.54  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++|.|+||+|||++|+.|++.+
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHHH
Confidence            69999999999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.58  E-value=0.0012  Score=53.89  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++|.|+||+|||++++.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.58  E-value=0.0014  Score=53.55  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.+.+.|.|++||||||++..|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            45679999999999999999999875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.0011  Score=63.17  Aligned_cols=32  Identities=16%  Similarity=0.102  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ...++|.||||+||||+|+.+++.+|+.++.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34699999999999999999999998766543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.57  E-value=0.00035  Score=54.92  Aligned_cols=24  Identities=13%  Similarity=-0.024  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .|+|.|+||+|||++|+.+++..+
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC
Confidence            389999999999999999988765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.56  E-value=0.0013  Score=58.31  Aligned_cols=36  Identities=11%  Similarity=-0.121  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIV  113 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dli  113 (268)
                      +..++|.|+||+||||+++.+++.+   +.  .+++..++.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            3459999999999999999999977   54  456665554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.55  E-value=0.0014  Score=58.96  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +..++|.||||+|||++|+.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356999999999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.54  E-value=0.0015  Score=53.98  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      ..++|.|+||+||||+++.+++.++.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            36899999999999999999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.47  E-value=0.0016  Score=54.85  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++..+.|.|+|||||||++..|+..
T Consensus        19 ggi~-~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           19 GGIE-TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEE-TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCc-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3444 6778999999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.46  E-value=0.002  Score=61.44  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++|.||||+||||+++.|+...+.+++.+
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i~i   95 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFITA   95 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            99999999999999999999987665443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.45  E-value=0.0012  Score=66.35  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQ  115 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir~  115 (268)
                      .-|+|.||||+|||++|+.+|+.+|...+.  ..+++.+
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk  277 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK  277 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence            459999999999999999999999987654  4465543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.44  E-value=0.0016  Score=62.69  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ++..++|.||||+||||+++.|+..++...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~  136 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF  136 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            466899999999999999999999987654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.43  E-value=0.0015  Score=61.22  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-CCCc--cchhHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVR  114 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l-~~~~--is~~dlir  114 (268)
                      .-|+|.||||+|||++|+.++..+ +.++  ++..+++.
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            458999999999999999999998 5544  45555543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.41  E-value=0.0012  Score=58.80  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      .++|.|+||+|||++++.+++.++..++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            5999999999999999999999886543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.41  E-value=0.0037  Score=55.80  Aligned_cols=27  Identities=15%  Similarity=0.154  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++..|+|+|++||||||++..||..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            356789999999999999999999876

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.41  E-value=0.0016  Score=57.39  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ..++|.|+||+|||++++.+++.++.+++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            35899999999999999999999887653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.40  E-value=0.0022  Score=60.47  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ...++|+|+||+|||++++.|++.+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4468999999999999999999987

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.40  E-value=0.0014  Score=54.09  Aligned_cols=28  Identities=25%  Similarity=0.126  Sum_probs=23.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCC--ccch
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVP--RISM  109 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~--~is~  109 (268)
                      ++|+|++|||||++|..|+.. +.+  |+.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999987 653  4444

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.39  E-value=0.0027  Score=49.88  Aligned_cols=26  Identities=19%  Similarity=0.073  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45688999999999999999999653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.38  E-value=0.002  Score=51.91  Aligned_cols=27  Identities=11%  Similarity=0.191  Sum_probs=22.7

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.+..+|+|+|.+|+||||+.++|...
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            456788999999999999999999864

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.38  E-value=0.0019  Score=60.68  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ..++|.||||+||||+++.|++.++..++.+
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            4699999999999999999999998765544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.37  E-value=0.0022  Score=50.18  Aligned_cols=26  Identities=12%  Similarity=0.119  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.37  E-value=0.0024  Score=51.84  Aligned_cols=27  Identities=7%  Similarity=0.048  Sum_probs=22.9

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.+..+|+|+|.+|+||||+..++...
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            356678999999999999999887653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.36  E-value=0.004  Score=55.40  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..+.|+|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.35  E-value=0.0029  Score=50.96  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            366789999999999999999999877

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.35  E-value=0.0024  Score=51.72  Aligned_cols=27  Identities=11%  Similarity=0.035  Sum_probs=23.6

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.+..+|+|+|.+|+||||+..+|...
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            456788999999999999999999864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.32  E-value=0.0025  Score=52.42  Aligned_cols=25  Identities=12%  Similarity=0.037  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..+++.|+|||||||.+-.++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999997777654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.32  E-value=0.0015  Score=56.25  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .|+|.|+||+|||++|+.+++..+
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcC
Confidence            489999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.32  E-value=0.0021  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.|+|++||||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468999999999999999999877

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.30  E-value=0.0029  Score=50.16  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.29  E-value=0.0028  Score=51.91  Aligned_cols=26  Identities=19%  Similarity=0.002  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.+.++|.|++||||||+++.|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34579999999999999999998764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.29  E-value=0.0014  Score=58.73  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.||||+||||+++.+++.+
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3469999999999999999999877

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.28  E-value=0.0026  Score=53.20  Aligned_cols=25  Identities=12%  Similarity=0.090  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+++|.|+||||||++|..+..
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~   27 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMA   27 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHH
Confidence            3568999999999999999988643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.27  E-value=0.0026  Score=53.47  Aligned_cols=29  Identities=14%  Similarity=0.152  Sum_probs=23.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++-.++|.|+|||||||++..++..
T Consensus        18 gGl~-~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           18 GGIP-ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TSEE-TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCC-CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3344 6778999999999999999888654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.27  E-value=0.0022  Score=57.72  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|.|+||+|||++++.+++.+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3479999999999999999999876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.26  E-value=0.0024  Score=56.88  Aligned_cols=38  Identities=13%  Similarity=0.090  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC----CC--ccchhHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQ  115 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~----~~--~is~~dlir~  115 (268)
                      +..++|.|+||+|||+++..++..+.    ..  +++..+++.+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            45699999999999999999988543    33  3566666544

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.26  E-value=0.0034  Score=54.80  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++|.||||+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            38999999999999999999986

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.22  E-value=0.0029  Score=56.56  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-.+.|+||+||||||+++.|+..+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            66789999999999999999999887

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.22  E-value=0.0031  Score=56.28  Aligned_cols=22  Identities=14%  Similarity=0.117  Sum_probs=20.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++|.||+|+||||+++.|+..+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999965

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.21  E-value=0.0024  Score=57.08  Aligned_cols=26  Identities=12%  Similarity=0.078  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34469999999999999999999977

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.21  E-value=0.0023  Score=51.40  Aligned_cols=28  Identities=14%  Similarity=0.023  Sum_probs=22.0

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+.+..+|+|+|.+|+||||+..+|...
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3356789999999999999999999753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.20  E-value=0.0036  Score=56.44  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++..+.|+|+.||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.20  E-value=0.0042  Score=50.30  Aligned_cols=27  Identities=11%  Similarity=0.085  Sum_probs=23.2

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.+..+|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            345678999999999999999999763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.19  E-value=0.003  Score=50.96  Aligned_cols=26  Identities=15%  Similarity=0.072  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.18  E-value=0.0028  Score=49.58  Aligned_cols=26  Identities=12%  Similarity=0.032  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999999753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.16  E-value=0.0039  Score=54.27  Aligned_cols=26  Identities=8%  Similarity=0.000  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+-.++|+||.||||||+.+.|+..+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            56689999999999999999998865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0022  Score=57.70  Aligned_cols=26  Identities=8%  Similarity=0.047  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..++|.||||+|||++++.+++.+
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            56679999999999999999999987

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.15  E-value=0.0031  Score=50.80  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999864

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.15  E-value=0.0028  Score=60.25  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR  114 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir  114 (268)
                      .-|+|.|+||+|||++|+.+++..+.+++  +..++..
T Consensus       239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~  276 (489)
T 3hu3_A          239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS  276 (489)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred             CcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence            45999999999999999999999886554  5555553

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.12  E-value=0.002  Score=57.30  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=22.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++|.|+||+|||++|+.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            99999999999999999999876

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.12  E-value=0.004  Score=49.30  Aligned_cols=26  Identities=8%  Similarity=0.045  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999865

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.12  E-value=0.0031  Score=49.80  Aligned_cols=26  Identities=15%  Similarity=0.176  Sum_probs=22.3

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |.+..+|+|+|.+|+||||+...|..
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHc
Confidence            44567899999999999999999975

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.12  E-value=0.0038  Score=48.46  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+++|.+|+||||+..+|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.08  E-value=0.0035  Score=49.16  Aligned_cols=26  Identities=8%  Similarity=-0.013  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999999854

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.07  E-value=0.0039  Score=48.44  Aligned_cols=24  Identities=13%  Similarity=0.027  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.06  E-value=0.0039  Score=62.08  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..++|.|+||+|||++|+.|++.+
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999999997

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.06  E-value=0.0033  Score=55.03  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=21.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++|.|+||+|||++++.+++.+.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            99999999999999999999863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.06  E-value=0.004  Score=55.47  Aligned_cols=26  Identities=15%  Similarity=0.172  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|.|+|+.||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46689999999999999999999876

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.05  E-value=0.0027  Score=51.79  Aligned_cols=29  Identities=10%  Similarity=0.095  Sum_probs=22.1

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+.+..+|+|+|.+|+||||+.+.+...+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence            44567899999999999999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.04  E-value=0.0041  Score=50.08  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |.+..+|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.03  E-value=0.004  Score=50.75  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|++||||||+.+.|+..
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.03  E-value=0.0043  Score=50.41  Aligned_cols=26  Identities=12%  Similarity=-0.096  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.02  E-value=0.003  Score=50.35  Aligned_cols=25  Identities=16%  Similarity=0.111  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|++|+||||+..+|..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999999998863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.01  E-value=0.0042  Score=54.37  Aligned_cols=27  Identities=11%  Similarity=0.058  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-.++|+|+|||||||+++.|+...
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367789999999999999999988754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.01  E-value=0.0035  Score=56.06  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=21.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++|.||||+||||+++.+++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.01  E-value=0.0036  Score=50.59  Aligned_cols=27  Identities=7%  Similarity=0.133  Sum_probs=21.9

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+....+|+|+|.+|+||||+..+|..
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            345678899999999999999999865

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.01  E-value=0.0059  Score=49.03  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.00  E-value=0.0042  Score=48.11  Aligned_cols=24  Identities=13%  Similarity=0.087  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+++|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.0046  Score=49.90  Aligned_cols=26  Identities=12%  Similarity=0.063  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+.++|+|+|++|+||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.00  E-value=0.0042  Score=48.63  Aligned_cols=25  Identities=12%  Similarity=0.096  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            5578999999999999999999764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.00  E-value=0.0042  Score=49.76  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+.+|+|+|.+|+||||+.++|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.99  E-value=0.0036  Score=56.79  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      +.++.|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999987643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.99  E-value=0.0074  Score=55.10  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+|.|+|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            467789999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.98  E-value=0.0052  Score=54.50  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++.+|+|+|++||||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998765

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.97  E-value=0.0045  Score=54.20  Aligned_cols=24  Identities=33%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++|.|+||+||||+++.+++.++
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            499999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.96  E-value=0.0052  Score=50.94  Aligned_cols=26  Identities=15%  Similarity=0.127  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.++|+|+|.+||||||+...|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.96  E-value=0.0047  Score=50.49  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|++|+||||+.+.|+..
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.95  E-value=0.0053  Score=49.00  Aligned_cols=26  Identities=8%  Similarity=0.003  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.95  E-value=0.0047  Score=48.92  Aligned_cols=26  Identities=8%  Similarity=0.035  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|++|+||||+...|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.95  E-value=0.004  Score=49.28  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ....+|+|+|.+|+||||+...|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.95  E-value=0.0044  Score=49.23  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            45678999999999999999998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.95  E-value=0.0045  Score=49.00  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|++|+||||+.++|...
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.95  E-value=0.0022  Score=52.36  Aligned_cols=25  Identities=12%  Similarity=0.276  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+.|+|++||||||+++.|...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999999998763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.94  E-value=0.003  Score=55.91  Aligned_cols=31  Identities=16%  Similarity=0.053  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ..+++.||||+|||++++.+++.++..++.+
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3477778899999999999999998665544

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.93  E-value=0.0047  Score=56.33  Aligned_cols=30  Identities=20%  Similarity=0.096  Sum_probs=25.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+.| ++..+.|.|+|||||||++..++...
T Consensus        56 GGi~-~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           56 GGYP-RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             SSEE-TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcc-CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4555 77889999999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.93  E-value=0.0032  Score=63.33  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL  117 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~  117 (268)
                      .-|++.||||+|||.+|+.+|...+.+++++  .+++....
T Consensus       512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v  552 (806)
T 3cf2_A          512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF  552 (806)
T ss_dssp             SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence            3489999999999999999999999876654  56765543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.93  E-value=0.0056  Score=48.45  Aligned_cols=25  Identities=12%  Similarity=0.142  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+...|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4667899999999999999999975

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.92  E-value=0.0039  Score=53.36  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+||.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            367789999999999999999998544

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.92  E-value=0.0042  Score=56.00  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM  109 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~  109 (268)
                      ++.| ++..++|.|+||+|||++|..++...|  +.++++
T Consensus       118 GGi~-~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          118 GHRY-ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             TEEE-ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCC-CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            4455 455689999999999999999997643  456666

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.92  E-value=0.0049  Score=57.61  Aligned_cols=36  Identities=8%  Similarity=0.051  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----CC--CccchhHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EV--PRISMSSIV  113 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l-----~~--~~is~~dli  113 (268)
                      +..++|.|+||+||||+++.++..+     +.  .+++..++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            3459999999999999999999876     44  345555543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.91  E-value=0.0053  Score=49.08  Aligned_cols=26  Identities=8%  Similarity=-0.009  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999863

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.91  E-value=0.005  Score=48.52  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            4578999999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.89  E-value=0.0054  Score=49.42  Aligned_cols=26  Identities=12%  Similarity=0.012  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+...|...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            45678999999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.89  E-value=0.0053  Score=47.84  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.+|+||||+.+.|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999999763

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.88  E-value=0.0049  Score=48.72  Aligned_cols=26  Identities=8%  Similarity=-0.031  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcC
Confidence            35578999999999999999999753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.88  E-value=0.0046  Score=50.22  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ....+|+|+|.+|+||||+...|..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.88  E-value=0.0054  Score=48.39  Aligned_cols=26  Identities=12%  Similarity=0.117  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.88  E-value=0.0057  Score=47.55  Aligned_cols=25  Identities=12%  Similarity=-0.071  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.87  E-value=0.0049  Score=51.84  Aligned_cols=28  Identities=18%  Similarity=0.218  Sum_probs=23.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |+.| ++-.++|.|+||+|||++|..++.
T Consensus        25 GGl~-~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           25 GGFP-EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TSEE-TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCC-CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4555 777899999999999999988754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.87  E-value=0.006  Score=51.97  Aligned_cols=27  Identities=19%  Similarity=-0.103  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++..+++.|+||+||||.+-.++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            467889999999999999999988876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.86  E-value=0.0097  Score=55.83  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|+|.|++||||||++..||..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.85  E-value=0.0055  Score=48.70  Aligned_cols=26  Identities=12%  Similarity=-0.096  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Confidence            35578999999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.84  E-value=0.0063  Score=50.60  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..+|+|+|.+|+||||+..+|+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.84  E-value=0.0055  Score=47.93  Aligned_cols=24  Identities=13%  Similarity=0.039  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            468999999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.83  E-value=0.0068  Score=48.82  Aligned_cols=26  Identities=12%  Similarity=0.050  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+...|...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.82  E-value=0.0051  Score=55.75  Aligned_cols=30  Identities=17%  Similarity=0.127  Sum_probs=26.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++.| ++..+.|.|+|||||||++..|+-..
T Consensus       126 ggi~-~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          126 GGIE-TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEE-SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444 78899999999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.81  E-value=0.0061  Score=50.32  Aligned_cols=27  Identities=11%  Similarity=0.035  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+|+|+|++|+||||+..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.81  E-value=0.0055  Score=47.90  Aligned_cols=23  Identities=17%  Similarity=0.095  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.80  E-value=0.0074  Score=48.37  Aligned_cols=26  Identities=19%  Similarity=0.127  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...++|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            35568999999999999999999765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.79  E-value=0.0055  Score=47.82  Aligned_cols=24  Identities=8%  Similarity=0.124  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.79  E-value=0.0043  Score=52.64  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.79  E-value=0.0048  Score=52.85  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367789999999999999999998643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.77  E-value=0.0067  Score=54.70  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.++.|+|+|||||||+.+.|+..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            367789999999999999999998654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.77  E-value=0.0058  Score=48.76  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.76  E-value=0.0067  Score=48.06  Aligned_cols=26  Identities=8%  Similarity=0.035  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.76  E-value=0.0057  Score=54.74  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .++|.|+||+||||+++.+++.++.
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999998865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.76  E-value=0.0062  Score=49.29  Aligned_cols=26  Identities=19%  Similarity=0.134  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            45678999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.75  E-value=0.0046  Score=49.85  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|++|+||||+.++|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999986

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.75  E-value=0.0059  Score=49.01  Aligned_cols=28  Identities=7%  Similarity=0.070  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..+|+|+|.+|+||||+.+.|...+.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3567899999999999999988877553

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.75  E-value=0.0047  Score=49.88  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+|+|+|.+|+||||+..+|....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.74  E-value=0.006  Score=49.82  Aligned_cols=26  Identities=15%  Similarity=0.011  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            46678999999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.74  E-value=0.0068  Score=49.59  Aligned_cols=26  Identities=12%  Similarity=0.029  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45688999999999999999999753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.73  E-value=0.0057  Score=49.56  Aligned_cols=26  Identities=12%  Similarity=0.092  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            45678999999999999999999764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.72  E-value=0.0059  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+.++|..
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999998853

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.72  E-value=0.007  Score=49.35  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            56789999999999999999999753

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.72  E-value=0.0077  Score=52.75  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .-|+|.||||+|||.+|..|+..++
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4599999999999999999998653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.71  E-value=0.0056  Score=53.23  Aligned_cols=28  Identities=21%  Similarity=0.116  Sum_probs=23.9

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.| ++-.++|.|++||||||++..++..
T Consensus        26 gl~-~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMV-AGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             Ccc-CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            344 6778999999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.71  E-value=0.0067  Score=47.55  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.+|+||||+..+|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.71  E-value=0.0056  Score=60.82  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIV  113 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dli  113 (268)
                      .++|.||||+|||++|+.|++.++..  .+++.++.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~  525 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM  525 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence            59999999999999999999999754  45555544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.70  E-value=0.0069  Score=48.16  Aligned_cols=25  Identities=8%  Similarity=0.110  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+...|...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            5578999999999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.70  E-value=0.0056  Score=51.46  Aligned_cols=25  Identities=12%  Similarity=-0.074  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+-++.|+|+.||||||+.+.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.68  E-value=0.0071  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.088  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.68  E-value=0.0077  Score=48.89  Aligned_cols=26  Identities=15%  Similarity=0.109  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.67  E-value=0.0059  Score=52.38  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.67  E-value=0.0055  Score=53.29  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.66  E-value=0.0069  Score=48.89  Aligned_cols=26  Identities=8%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999999753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.65  E-value=0.0039  Score=51.10  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+.+|+|+|++||||||+.+.|+..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46778999999999999999988643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.65  E-value=0.0053  Score=53.95  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467789999999999999999998654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.63  E-value=0.0074  Score=49.03  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=21.4

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+.+..+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456789999999999999999998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.63  E-value=0.0068  Score=48.40  Aligned_cols=26  Identities=12%  Similarity=0.080  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            35678999999999999999999754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.63  E-value=0.0065  Score=48.34  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|.+|+||||+...|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            557899999999999999999984

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.61  E-value=0.0062  Score=53.66  Aligned_cols=33  Identities=12%  Similarity=-0.046  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      ..++|.|++|+||||+++.+++..+..+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            479999999999999999999988766676643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.61  E-value=0.008  Score=57.20  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+|.|+|+.||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            467899999999999999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.60  E-value=0.0082  Score=47.62  Aligned_cols=26  Identities=12%  Similarity=0.042  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.60  E-value=0.0057  Score=53.36  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467789999999999999999998654

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.60  E-value=0.0096  Score=49.43  Aligned_cols=27  Identities=11%  Similarity=-0.082  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++..+++.|++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457889999999999999999998887

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.59  E-value=0.0061  Score=53.15  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            467789999999999999999998654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.59  E-value=0.0072  Score=52.09  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+|+.||||||+.+.|+-.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36678999999999999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.59  E-value=0.0087  Score=54.20  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..|.|+|+|||||||+...|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.59  E-value=0.006  Score=52.57  Aligned_cols=27  Identities=11%  Similarity=0.381  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367789999999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.58  E-value=0.0087  Score=54.18  Aligned_cols=26  Identities=23%  Similarity=0.219  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..+|+|+|.||+||||++..|+..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.58  E-value=0.0087  Score=54.73  Aligned_cols=26  Identities=8%  Similarity=0.000  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|+|++||||||+.+.|+..+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            56689999999999999999998865

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.57  E-value=0.0069  Score=60.28  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ  115 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~  115 (268)
                      .++|.||||+|||++|+.|++.+     .+..+++.++...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~  563 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK  563 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence            59999999999999999999986     2455666665543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.56  E-value=0.0078  Score=56.31  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|+|.|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.56  E-value=0.0074  Score=54.76  Aligned_cols=29  Identities=21%  Similarity=0.100  Sum_probs=24.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++..+.|.|+|||||||+|..++..
T Consensus        56 GGl~-~G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           56 GGLP-RGRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             SSEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcc-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4555 6778999999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.56  E-value=0.0062  Score=52.74  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.56  E-value=0.0077  Score=52.51  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+|+.||||||+.+.|+-.
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46778999999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.55  E-value=0.0065  Score=53.14  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.55  E-value=0.0071  Score=51.96  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      -++.|+|+.||||||+.+.|+-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.54  E-value=0.0064  Score=51.73  Aligned_cols=27  Identities=33%  Similarity=0.286  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367789999999999999999998654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.54  E-value=0.0066  Score=52.73  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            367789999999999999999998654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.54  E-value=0.0093  Score=53.81  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=25.1

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++..+.|.|+|||||||+|..++..
T Consensus       117 GGl~-~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          117 GGIE-SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSBC-SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3445 7788999999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.53  E-value=0.0065  Score=52.07  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999998654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.53  E-value=0.16  Score=50.31  Aligned_cols=157  Identities=9%  Similarity=0.032  Sum_probs=78.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhc---CCCCh-----hHHHHHHHHhccCcccH--------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDL---SPRSS-----LHKQIANAVNRGEVVSE--------  139 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~---~~~~~-----~g~~i~~~l~~G~~ip~--------  139 (268)
                      ++..|+|+||   ||+|+.+.|.+.+.- ..++....-|..-   ..+..     ..+++...+.+|+.+..        
T Consensus       530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y  606 (721)
T 2xkx_A          530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY  606 (721)
T ss_pred             CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence            4567889998   499999999887631 1122211112110   01110     23344555555554321        


Q ss_pred             HHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHH
Q 024390          140 DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAEL  213 (268)
Q Consensus       140 ~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~  213 (268)
                      -+-.+-+.+.+.     .+..+|+|.-+..   ++.+... ..| ++||+..+.-..++++     ++.+++|++.-.+.
T Consensus       607 Gt~~~~v~~~~~-----~g~~~ildi~~~~---~~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~t~~~~~~rl~~a~~~  677 (721)
T 2xkx_A          607 GTSVQSVREVAE-----QGKHCILDVSANA---VRRLQAAHLHP-IAIFIRPRSLENVLEINKRITEEQARKAFDRATKL  677 (721)
T ss_pred             eeeHHHHHHHHH-----CCCcEEEeCCHHH---HHHHHhcccCC-EEEEEeCCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            012233444444     3567888864322   2233321 233 7888887643333334     33455666544221


Q ss_pred             chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                          +..|...-.. .|. +.+.++.++++.++|....
T Consensus       678 ----e~~~~~~fd~-vi~-Nd~l~~a~~~l~~~i~~~~  709 (721)
T 2xkx_A          678 ----EQEFTECFSA-IVE-GDSFEEIYHKVKRVIEDLS  709 (721)
T ss_pred             ----HHhccccCcE-EEE-CcCHHHHHHHHHHHHHhcc
Confidence                1111111112 343 3489999999999997654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.53  E-value=0.0053  Score=58.51  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..|+|.|+||+|||++|+.|++..+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4699999999999999999999774

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.52  E-value=0.011  Score=50.44  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+...+++.|.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            466789999999999999999999765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.52  E-value=0.0057  Score=49.48  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ....+|+|+|.+|+||||+...|...-
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            466789999999999999999998653

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.50  E-value=0.042  Score=48.73  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+.++|.||||+||||.++.|++..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            4679999999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.50  E-value=0.0087  Score=48.69  Aligned_cols=26  Identities=8%  Similarity=0.046  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45678999999999999999999764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.50  E-value=0.0084  Score=49.44  Aligned_cols=26  Identities=12%  Similarity=0.069  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.49  E-value=0.0059  Score=51.58  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356679999999999999999998654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.48  E-value=0.0083  Score=48.17  Aligned_cols=26  Identities=12%  Similarity=0.033  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.48  E-value=0.0082  Score=48.74  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+.+++...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999863

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.48  E-value=0.009  Score=47.80  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.48  E-value=0.0092  Score=48.53  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.48  E-value=0.0096  Score=46.37  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+..+|...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.48  E-value=0.0071  Score=52.48  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.46  E-value=0.0098  Score=47.78  Aligned_cols=24  Identities=17%  Similarity=0.079  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|.+|+||||+..+|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            567899999999999999999984

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.46  E-value=0.011  Score=47.74  Aligned_cols=24  Identities=13%  Similarity=0.064  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...+|+|+|.+|+||||+...|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            457899999999999999999976

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.41  E-value=0.0071  Score=49.45  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ....+|+|+|.+|+||||+..+|..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3557899999999999999999863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.41  E-value=0.0079  Score=55.67  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=23.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++.+ ++-.+.|+|+|||||||++..|+-
T Consensus       173 GGI~-~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          173 GGVE-TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TSEE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcC-CCcEEEEEcCCCCChHHHHHHHHH
Confidence            4444 778899999999999999998763

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.38  E-value=0.0077  Score=52.03  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            366789999999999999999998654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.38  E-value=0.0076  Score=52.97  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467789999999999999999998654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.38  E-value=0.0081  Score=52.30  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            366789999999999999999998654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.36  E-value=0.0098  Score=48.08  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            45678999999999999999999864

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.36  E-value=0.011  Score=49.82  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=21.4

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +.|.+..+|+|+|.+|+|||++..++..
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHh
Confidence            3466778999999999999999999875

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.35  E-value=0.0096  Score=49.01  Aligned_cols=33  Identities=9%  Similarity=-0.042  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .+.-|+|.|++|+||||+|..|.++ |...++-|
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD   47 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDD   47 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence            4567999999999999999999884 77666554

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.35  E-value=0.0097  Score=48.76  Aligned_cols=26  Identities=8%  Similarity=0.043  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            45678999999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.35  E-value=0.0098  Score=48.59  Aligned_cols=26  Identities=15%  Similarity=0.088  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+...|...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.34  E-value=0.009  Score=47.73  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+..+|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            47999999999999999999764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.32  E-value=0.0073  Score=54.96  Aligned_cols=27  Identities=11%  Similarity=0.037  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..++|.|+.||||||+.+.|+..+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            566799999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.32  E-value=0.013  Score=48.95  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+...|...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6688999999999999999998753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.31  E-value=0.013  Score=52.61  Aligned_cols=27  Identities=11%  Similarity=0.132  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..|.|+|++|+||||++..||..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999866

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.29  E-value=0.013  Score=53.44  Aligned_cols=25  Identities=12%  Similarity=0.003  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +-.++|+||.||||||+.+.|+..+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3489999999999999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.29  E-value=0.0094  Score=51.53  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=22.5

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |.+..+|+|+|.||+||||+...|..
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHC
Confidence            34667899999999999999999975

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.29  E-value=0.011  Score=48.90  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.28  E-value=0.0094  Score=53.20  Aligned_cols=30  Identities=20%  Similarity=0.134  Sum_probs=25.3

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++.| ++..+.|.|+||||||++|..++...
T Consensus       102 GGl~-~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          102 GGIE-TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TSEE-TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCC-CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            4455 67789999999999999999998753

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.28  E-value=0.0073  Score=53.54  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .|+|.|+||+|||++|+.+++..
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHS
T ss_pred             cEEEECCCCchHHHHHHHHHHhC
Confidence            48999999999999999999854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.28  E-value=0.011  Score=48.59  Aligned_cols=25  Identities=16%  Similarity=-0.000  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.27  E-value=0.012  Score=47.77  Aligned_cols=25  Identities=12%  Similarity=0.028  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.27  E-value=0.0086  Score=51.80  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999998654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.27  E-value=0.01  Score=50.08  Aligned_cols=26  Identities=12%  Similarity=0.138  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ....+|+|+|.+|+||||+...|...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            35678999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.27  E-value=0.0083  Score=47.58  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+..++...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.26  E-value=0.01  Score=48.51  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            3567899999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.25  E-value=0.011  Score=52.57  Aligned_cols=29  Identities=14%  Similarity=-0.052  Sum_probs=24.8

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| ++..++|.|+||||||++|..++..
T Consensus        93 GGl~-~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           93 GGLE-SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SSEE-TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcc-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4455 6788999999999999999999864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.24  E-value=0.011  Score=48.92  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            3567899999999999999999974

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.21  E-value=0.013  Score=48.60  Aligned_cols=26  Identities=15%  Similarity=0.219  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            45688999999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.21  E-value=0.015  Score=50.42  Aligned_cols=25  Identities=20%  Similarity=0.072  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..++|+|+|.||+||||+...|...
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            4568999999999999999999754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.21  E-value=0.011  Score=53.83  Aligned_cols=28  Identities=14%  Similarity=0.236  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++..+|+|+|.+||||||+++.+.-.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            5678999999999999999999864443

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.0096  Score=56.08  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+.++.|+|+.||||||+++.|+..+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            67789999999999999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.20  E-value=0.012  Score=53.56  Aligned_cols=37  Identities=14%  Similarity=0.041  Sum_probs=28.4

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM  109 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~  109 (268)
                      ++.| ++..++|.|+||+||||+|..++...     .+.+|++
T Consensus        58 GGl~-~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           58 GGLP-MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             SSEE-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            3455 67789999999999999999988653     3445665

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.17  E-value=0.012  Score=50.94  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .++|+|+|+||+||||+...|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.17  E-value=0.014  Score=52.58  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+|.|+|+||+||||+...|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367789999999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.16  E-value=0.012  Score=48.87  Aligned_cols=26  Identities=15%  Similarity=0.072  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            45678999999999999999999763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.16  E-value=0.012  Score=48.34  Aligned_cols=25  Identities=16%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|.+|+||||+...|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            4568999999999999999999863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.14  E-value=0.012  Score=53.80  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+||.||||||+.+.|+-..
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            356789999999999999999998644

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.13  E-value=0.0078  Score=60.81  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|+|+||+|||++++.|++.+
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999999987

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.12  E-value=0.013  Score=51.12  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+.|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.12  E-value=0.012  Score=47.98  Aligned_cols=26  Identities=15%  Similarity=0.031  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.12  E-value=0.012  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|++|+||||+.++|..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.11  E-value=0.012  Score=55.09  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.+|+|+|++|+||||++..|+..+
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999875

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.10  E-value=0.012  Score=48.68  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHH-HHHHh
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEM-LSKLL  102 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~-La~~l  102 (268)
                      .+.+..+|+|+|.+|+||||+..+ +...+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            345678999999999999999998 54444

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.09  E-value=0.013  Score=50.02  Aligned_cols=27  Identities=11%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+|+|+|.+|+||||+..+|...-
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999997543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.08  E-value=0.014  Score=47.80  Aligned_cols=26  Identities=8%  Similarity=0.093  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..++...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            35678999999999999999998853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.07  E-value=0.017  Score=53.81  Aligned_cols=27  Identities=11%  Similarity=-0.140  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+-.++|+||.||||||+.+.|...++
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            455799999999999999999998775

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.07  E-value=0.013  Score=53.41  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            366789999999999999999998654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=95.07  E-value=0.24  Score=43.73  Aligned_cols=161  Identities=12%  Similarity=0.016  Sum_probs=77.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHh---hcCCCCh-----hHHHHHHHHhccCcccHH-------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQ---DLSPRSS-----LHKQIANAVNRGEVVSED-------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~-is~~dlir~---~~~~~~~-----~g~~i~~~l~~G~~ip~~-------  140 (268)
                      ++.-|||+||   ||+|+.+.|.+.+.-.+ .++..--|.   -...+..     ..+.....+.+|+.+...       
T Consensus        99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~Y  175 (292)
T 3tvt_A           99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLY  175 (292)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcccee
Confidence            4445888887   59999999988764211 111111111   0001100     123344455555432110       


Q ss_pred             -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhh----hHHHHHHHHHHHHHc
Q 024390          141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNR----GGSLKEKLEAYAELS  214 (268)
Q Consensus       141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl----~~~~~~rl~~y~~~~  214 (268)
                       +...-+.+.+.+     +..+|+|--+...   ..+......-++||+..| .+++.+|+    .+..+++.....+  
T Consensus       176 GT~~~~V~~~~~~-----gk~viLdid~qg~---~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k--  245 (292)
T 3tvt_A          176 GTSVASVREVAEK-----GKHCILDVSGNAI---KRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIK--  245 (292)
T ss_dssp             EEEHHHHHHHHHH-----TCEEEECCCTHHH---HHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHH--
T ss_pred             EEehHHHHHHHHc-----CCcEEEeccchhh---hhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHH--
Confidence             012233344443     5678888654322   333332222357777764 55666666    2233333322211  


Q ss_pred             hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhcccc
Q 024390          215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINA  254 (268)
Q Consensus       215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~~  254 (268)
                        ++..|.+.-.. +|. +.+.++.+++|.++|......+
T Consensus       246 --~e~e~~~~fD~-vIv-Nddle~a~~~l~~iI~~e~~~~  281 (292)
T 3tvt_A          246 --MEQEFGEYFTG-VVQ-GDTIEEIYSKVKSMIWSQSGPT  281 (292)
T ss_dssp             --HHHHHTTTCSE-EEC-CSSHHHHHHHHHHHHHHHTCSE
T ss_pred             --HHHhhhhhCCE-EEE-CcCHHHHHHHHHHHHHHhhCCC
Confidence              12222221112 232 5689999999999998765443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.05  E-value=0.014  Score=48.04  Aligned_cols=25  Identities=8%  Similarity=0.078  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            4567899999999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.04  E-value=0.013  Score=53.82  Aligned_cols=27  Identities=22%  Similarity=0.366  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+||.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            366789999999999999999998654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.04  E-value=0.014  Score=47.15  Aligned_cols=26  Identities=8%  Similarity=-0.017  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35578999999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.01  E-value=0.014  Score=53.33  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            366789999999999999999998654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.96  E-value=0.014  Score=53.12  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            366789999999999999999998644

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.95  E-value=0.012  Score=51.98  Aligned_cols=27  Identities=33%  Similarity=0.286  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467789999999999999999998653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.95  E-value=0.017  Score=55.10  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+|+|+|.|||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356689999999999999999999765

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.93  E-value=0.019  Score=51.33  Aligned_cols=27  Identities=15%  Similarity=0.055  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      ..++|.|+||+|||++++.+++.++..
T Consensus        25 ~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           25 HALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             eeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            359999999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.93  E-value=0.015  Score=53.17  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            467789999999999999999998654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.93  E-value=0.012  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +-++.|+|+.||||||+.+.|+-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6689999999999999999998654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.92  E-value=0.018  Score=47.19  Aligned_cols=25  Identities=8%  Similarity=0.024  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+...|...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            5578999999999999999998853

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.92  E-value=0.015  Score=53.28  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            366789999999999999999998654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.92  E-value=0.0088  Score=47.66  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=11.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...+|+|+|.+|+||||+..+|..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999874

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.91  E-value=0.013  Score=56.96  Aligned_cols=26  Identities=27%  Similarity=0.486  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      ..++|.|+||+||||+++.|+..++.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            46999999999999999999998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.90  E-value=0.012  Score=47.23  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLS   99 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La   99 (268)
                      +..+|+|+|.+|+||||+..+|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            56789999999999999999885

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.84  E-value=0.023  Score=48.57  Aligned_cols=25  Identities=8%  Similarity=-0.077  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+|++.|+||+||||++-.++..+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4679999999999999988888764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.81  E-value=0.016  Score=53.03  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            356789999999999999999998654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.80  E-value=0.0093  Score=53.21  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            467789999999999999999998765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.78  E-value=0.012  Score=59.38  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++|.|+||+|||++|+.|++.+
T Consensus       590 ~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          590 SFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999999987

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.78  E-value=0.011  Score=53.24  Aligned_cols=27  Identities=15%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+..++|.|+.||||||+.+.|+..+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            456799999999999999999988764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.78  E-value=0.02  Score=46.57  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|.||+||||+..++...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.77  E-value=0.02  Score=51.54  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |+.| ++ ++.|.|+|||||||+|-.++..
T Consensus        24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~   51 (333)
T 3io5_A           24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSS   51 (333)
T ss_dssp             CCBC-SE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CCCc-CC-eEEEECCCCCCHHHHHHHHHHH
Confidence            5666 56 7999999999999998887654

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.76  E-value=0.022  Score=48.80  Aligned_cols=29  Identities=14%  Similarity=0.090  Sum_probs=23.4

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ....+.+.++.|++||||||.+-.++.++
T Consensus        15 ~~~~g~l~v~~G~MgsGKTT~lL~~~~r~   43 (234)
T 2orv_A           15 SKTRGQIQVILGPMFSGKSTELMRRVRRF   43 (234)
T ss_dssp             ---CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            34568899999999999999988887776

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.75  E-value=0.019  Score=57.01  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..++|+|+||+|||++++.|++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45568999999999999999999987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.74  E-value=0.02  Score=50.72  Aligned_cols=25  Identities=16%  Similarity=0.109  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..|++.|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999999999776

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.72  E-value=0.023  Score=50.23  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..+.|+|++|+||||++..||..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56678889999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.68  E-value=0.012  Score=53.37  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+||.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            356789999999999999999998644

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.68  E-value=0.022  Score=50.08  Aligned_cols=30  Identities=13%  Similarity=0.093  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC--Cccch
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV--PRISM  109 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~--~~is~  109 (268)
                      .++|.|++|+|||++++.+++..+.  .+++.
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            7999999999999999999998753  34444

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.65  E-value=0.019  Score=53.00  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+||.||||||+.+.|+-.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            46778999999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.65  E-value=0.022  Score=50.61  Aligned_cols=27  Identities=19%  Similarity=0.190  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-.++|.|+||+||||++..++...
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367789999999999999999998654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.60  E-value=0.019  Score=51.95  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CeEEEE--EcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAF--IGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI--~G~pGSGKST~a~~La~~l  102 (268)
                      +..++|  .|+||+||||+++.+++.+
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            346777  9999999999999998875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.60  E-value=0.019  Score=52.32  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+.|+|++|+||||+.+.|+...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            45689999999999999999998543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.59  E-value=0.029  Score=49.12  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...++|+|+|.||+||||+...|...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            35568999999999999999999754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.57  E-value=0.022  Score=47.61  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...+|+|+|.||+||||+..++..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999874

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.53  E-value=0.02  Score=50.58  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|.|+|+||+||||+...|...
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            35568999999999999999999753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.49  E-value=0.023  Score=49.55  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.||+||||+...|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.49  E-value=0.021  Score=54.79  Aligned_cols=28  Identities=11%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |..+-++.|+|+.||||||+.+.|+-.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3578899999999999999999998654

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.48  E-value=0.031  Score=47.31  Aligned_cols=27  Identities=15%  Similarity=-0.104  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++.+.++.|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457889999999999999999998876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.48  E-value=0.019  Score=54.64  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEML   98 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~L   98 (268)
                      ++-.+.|+|++||||||+++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            6778999999999999999994

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.46  E-value=0.012  Score=48.58  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...++|+|+|.+|+||||+...|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34578999999999999999999765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.45  E-value=0.023  Score=50.27  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+.|+|++||||||+.+.|+ ..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            45689999999999999999998 54

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.43  E-value=0.024  Score=51.78  Aligned_cols=38  Identities=18%  Similarity=0.116  Sum_probs=28.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~  110 (268)
                      ++.| ++..++|.|+||+||||+|..++...     .+.+|++.
T Consensus        69 GGl~-~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           69 GGIP-RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             SSEE-TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcc-CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            3455 66778999999999999999987653     34456653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.38  E-value=0.017  Score=55.04  Aligned_cols=26  Identities=8%  Similarity=0.121  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|+|++||||||+.+.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45669999999999999999998765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.37  E-value=0.013  Score=53.36  Aligned_cols=27  Identities=19%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            366789999999999999999998644

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.33  E-value=0.023  Score=50.55  Aligned_cols=25  Identities=12%  Similarity=-0.121  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.+.++|.|+.||||||+.+.|...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            3467899999999999999999864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.31  E-value=0.031  Score=52.20  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++-.++|.|+||+||||++..++..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            6778999999999999999998774

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.31  E-value=0.03  Score=44.93  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+|+|+.||||||+.+.|.--++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            689999999999999999987665

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.31  E-value=0.033  Score=52.02  Aligned_cols=26  Identities=23%  Similarity=0.126  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|+|.|++|+||||++..||..+
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.26  E-value=0.021  Score=50.47  Aligned_cols=25  Identities=12%  Similarity=0.084  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+.|+|++||||||+.+.|+..
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc
Confidence            4568999999999999999999743

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.22  E-value=0.027  Score=52.32  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+.|+|++||||||+.+.|+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            4458999999999999999999874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.22  E-value=0.025  Score=48.75  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|.|||||||+...|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999999754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.21  E-value=0.0091  Score=48.43  Aligned_cols=26  Identities=15%  Similarity=0.187  Sum_probs=7.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEEC-----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999988754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.19  E-value=0.027  Score=49.89  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=22.5

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |...-.|.|+|.||+||||+...|...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            345568999999999999999998753

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.19  E-value=0.028  Score=52.53  Aligned_cols=23  Identities=13%  Similarity=0.229  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++|.|+|||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.18  E-value=0.026  Score=52.67  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=21.0

Q ss_pred             CCeE--EEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVH--WAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~--IvI~G~pGSGKST~a~~La~~  101 (268)
                      .|-.  +.|+|++||||||+.+.|+..
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4445  999999999999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.05  E-value=0.036  Score=51.15  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .++.++.|+|+||+||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4678999999999999999999987

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.99  E-value=0.012  Score=52.72  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred             cCcceEEEECCCCccHHHHHHHHhC
Confidence            3566899999999999999998854

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=93.97  E-value=0.012  Score=57.25  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .|+|.|+||+|||++|+.+++..+-
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r  353 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPR  353 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCC
Confidence            6999999999999999999998753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.96  E-value=0.013  Score=48.17  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ....+|+|+|.+|+||||+..+|..
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc
Confidence            3567899999999999999988863

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=93.94  E-value=0.035  Score=48.22  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.||+||||+...|...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.92  E-value=0.036  Score=50.15  Aligned_cols=28  Identities=11%  Similarity=0.073  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+|-++.|+|+.|+||||+.+.|+....
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778899999999999999999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=93.87  E-value=0.053  Score=46.42  Aligned_cols=26  Identities=8%  Similarity=0.095  Sum_probs=23.2

Q ss_pred             cCCCeEEEEEcCC---------CCChhHHHHHHHH
Q 024390           75 RRRGVHWAFIGSP---------RAKKHVYAEMLSK  100 (268)
Q Consensus        75 p~~~~~IvI~G~p---------GSGKST~a~~La~  100 (268)
                      +.+..+|+|+|.+         |+||||+..+|..
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            3566899999999         9999999999986

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=93.87  E-value=0.042  Score=51.23  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..|+|.|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678889999999999999999876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=92.93  E-value=0.011  Score=48.37  Aligned_cols=25  Identities=8%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            3567899999999999999988864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=93.85  E-value=0.036  Score=53.60  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ...++|.|+||+||||++..|...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999988754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.75  E-value=0.032  Score=49.33  Aligned_cols=24  Identities=13%  Similarity=0.034  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      -...|+|+|++|+||||+.+.|..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.71  E-value=0.04  Score=48.70  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+.+|+|+|.||+||||+..+|...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3578999999999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.68  E-value=0.043  Score=50.97  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|+||+||||+.+.|...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.67  E-value=0.043  Score=51.31  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++-++.|+|+.||||||+.+.|+....
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678899999999999999999998764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.64  E-value=0.049  Score=50.71  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++-.++|.|+||+|||+++..++..
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999999998864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.54  E-value=0.04  Score=52.46  Aligned_cols=26  Identities=8%  Similarity=0.019  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++-.+.|.|++||||||+++.++...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67789999999999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.50  E-value=0.042  Score=52.67  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.48  E-value=0.041  Score=53.11  Aligned_cols=27  Identities=19%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..|-.+.|+|+.||||||+.+.|+..+
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.46  E-value=0.035  Score=53.60  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..|-.+.|+|+.||||||+.+.|+..+.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            3677899999999999999999987653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.42  E-value=0.016  Score=51.72  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+..+.|+|++|+||||+.+.|+..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccc
Confidence            4668999999999999999998643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.42  E-value=0.014  Score=47.53  Aligned_cols=24  Identities=13%  Similarity=0.061  Sum_probs=20.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLS   99 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La   99 (268)
                      ....+|+|+|.+|+||||+...|.
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999988765

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=93.41  E-value=0.81  Score=40.66  Aligned_cols=134  Identities=14%  Similarity=0.101  Sum_probs=66.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccE
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIG  160 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g  160 (268)
                      |||+||   ||+|+.++|.+.+.-.+-..-. +          .+    .+.+|+-++.+.+.+.    +.     .+..
T Consensus       148 vVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~----------~r----~i~~~~fis~~~V~~v----l~-----~Gk~  200 (308)
T 3kfv_A          148 VVILGP---VADIAMQKLTAEMPDQFEIAET-V----------SR----TDSPSKIIKLDTVRVI----AE-----KDKH  200 (308)
T ss_dssp             EEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHH----HH-----TTCE
T ss_pred             EEEeCc---cHHHHHHHHHHhCccccccccc-c----------cc----cccCCCeecHHHHHHH----HH-----CCCc
Confidence            888999   7999999988765322111100 0          00    0345666655544444    33     3678


Q ss_pred             EEEcCCcCCHHHHHHHHhh-cCCCeEEEEecC-HHHHHhhh-------hHHHHHHHHHHHHHchHHHHHH-HhCCcEEEE
Q 024390          161 FILDGLPRSRIQAEILDQL-AEIDLVVNFKCA-DNFIVTNR-------GGSLKEKLEAYAELSKPLEDYY-QKQKKLLEF  230 (268)
Q Consensus       161 ~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~-~e~l~~Rl-------~~~~~~rl~~y~~~~~~l~~~y-~~~~~l~~I  230 (268)
                      +|||=-|..   ++.+... ..| ++||+.-| .+++.+|.       ++.++++++.-.    .++..| ...+.++.|
T Consensus       201 ~ILDId~QG---a~~lk~~~~~p-i~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~----eiE~~~~~~FD~vI~V  272 (308)
T 3kfv_A          201 ALLDVTPSA---IERLNYVQYYP-IVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ----KLRKHSSHLFTATIPL  272 (308)
T ss_dssp             EEECCCHHH---HHHHHHTTCCC-EEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH----HHHHHHGGGCSEEEEE
T ss_pred             EEEEECHHH---HHHHHhcCCCC-EEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH----HHHHhhhccCcEEEEc
Confidence            899843222   2334332 334 56666654 44555332       123333333321    222223 223444335


Q ss_pred             eCCCCHHHHHHHHHHHHHhhc
Q 024390          231 QVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       231 da~~s~eev~~~I~~~L~~~~  251 (268)
                      |  .+.++.++++.++|....
T Consensus       273 N--Ddle~A~~~L~~iI~~~~  291 (308)
T 3kfv_A          273 N--GTSDTWYQELKAIIREQQ  291 (308)
T ss_dssp             C--SSSTHHHHHHHHHHHHHT
T ss_pred             C--CCHHHHHHHHHHHHHHhc
Confidence            4  567888999999887654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.40  E-value=0.045  Score=53.29  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..|-++.|+||.||||||+.+.|+-.+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            4578899999999999999999998654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.39  E-value=0.11  Score=57.08  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=46.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhc--CCCChhHHHHHHHHhccCcccHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDL--SPRSSLHKQIANAVNRGEVVSEDIIFGLLSK  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~--~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~  148 (268)
                      .++..++|.||||+|||++|..++..-     .+.+|++.+.+....  ..+.++.    +. .--...|.+...+.+..
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~----~l-~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID----NL-LCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTT----TC-EEECCSSHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCch----hc-eeecCChHHHHHHHHHH
Confidence            377889999999999999999987653     234666653221110  0000000    00 00012244445556655


Q ss_pred             HHHcCCccCccEEEEcCC
Q 024390          149 RLEDGYYRGEIGFILDGL  166 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGf  166 (268)
                      .+.+.   ..+-+|+|.+
T Consensus      1500 lvr~~---~~~lVVIDsi 1514 (2050)
T 3cmu_A         1500 LARSG---AVDVIVVDSV 1514 (2050)
T ss_dssp             HHHHT---CCSEEEESCG
T ss_pred             HHhcC---CCCEEEEcCh
Confidence            55554   3578899975

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=93.37  E-value=0.19  Score=47.00  Aligned_cols=24  Identities=13%  Similarity=-0.111  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .....+|.|+|||||||....+++
T Consensus       160 ~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          160 SAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cccEEEEEcCCCCCHHHHHHHHhc
Confidence            455789999999999999988765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.36  E-value=0.047  Score=48.84  Aligned_cols=33  Identities=21%  Similarity=0.041  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .+.-++|.|++|+||||++..|.++ |...++-|
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD  175 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD  175 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence            4667999999999999999999875 76666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	1e-18
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	1e-13
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-13
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	5e-13
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-12
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	2e-12
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	9e-12
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-11
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	2e-10
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	8e-10
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	5e-09
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-07

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 79.1 bits (194), Expect = 1e-18
 Identities = 40/175 (22%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 77  RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
           R +  A +G+P + K   +  ++K  E+  +S   ++R ++   + +       +++G++
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV 196
           + +D++       L +     +  ++LDG PR+  QAE LD+  +ID V+N       I 
Sbjct: 65  IPDDVMT---RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 121

Query: 197 TN---RGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248
                R  ++ ++L+AY   ++P+ +YY+K+  L  F  G+   + W  +   L 
Sbjct: 122 QRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFS-GTETNKIWPHVYAFLQ 175

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 77  RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
           +GV    +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ G++
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCA 191
           VS++++  L+ K LE    +   GF+LDG PR+  QAE+LD L      ++D V+ F   
Sbjct: 62  VSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 119

Query: 192 DNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQ 241
           D+ ++    G           LK +LEAY   + PL +YY K+           P   + 
Sbjct: 120 DSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFA 179

Query: 242 GLLTAL 247
            +L A 
Sbjct: 180 SILAAF 185

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 20/180 (11%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G++V  D+ 
Sbjct: 5   LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFI-- 195
             L+  RL +       GFILDG PRS  QA+ L ++      +ID V+ F+ ++  +  
Sbjct: 65  NELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122

Query: 196 -------VTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPV-ETWQGLLTAL 247
                    +    +  +++ Y + + PL +YY+ Q K ++       + E +   L AL
Sbjct: 123 RLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVD---AVGTMDEVFARALRAL 179

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 63.7 bits (154), Expect = 5e-13
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A+ + +    P IS   + R  +   + L  +  + +++G +V +++ 
Sbjct: 5   LMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-----IDLVVNFKCADNFIVT 197
            G++ +R        + GF+LDG PR+  QAE LDQL       I+ V+N +     ++ 
Sbjct: 65  IGIVRER--LSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIA 122

Query: 198 NRGG-----SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
                    ++  +LE     + PL  +Y  ++ L+         + ++ L   L
Sbjct: 123 RLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 12/175 (6%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE +     +P IS   + R  +   + L  Q    ++RG++V +++ 
Sbjct: 5   LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVT 197
            G++ +RL     +   GF+LDG PR+  QAE L+ +      ++D V++     + ++ 
Sbjct: 65  IGIVRERLSKDDCQN--GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122

Query: 198 NRGGS-----LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
                     +  +LE   +  KPL D+Y+++  L          + +  +   L
Sbjct: 123 RLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELL 177

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (150), Expect = 2e-12
 Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGG 201
             L+ +R+     R   GF+LDG PR+  QA+ + +    +D V+ F   D  IV     
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVK 122

Query: 202 S-----LKEKLEAYAELSKPLEDYYQKQKKLLEFQV----GSAPVET 239
                 ++++L  Y +++ PL  YY K+ +    +     G+ PV  
Sbjct: 123 DDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAE 169

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 60.3 bits (145), Expect = 9e-12
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G+P + K    E++    ++  IS   ++R +++  S   K+    + +G++V ++I+
Sbjct: 8   ISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIV 67

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNRGG 201
             ++ +RL     +   G++LDG PRS  QA  L+      D  +     D  +V     
Sbjct: 68  VNMVKERLRQPDAQEN-GWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVF 126

Query: 202 -----SLKEKLEAYAELSKPLEDYYQK 223
                 +K +LE Y +  + L   Y+ 
Sbjct: 127 DDTEEKVKLRLETYYQNIESLLSTYEN 153

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDI 141
            +G P A K    E L K      +S   ++R +     S   + I N +  G++V ++I
Sbjct: 13  VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI 72

Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-- 199
              LL   + D     +  F++DG PR   QA   ++       + F      I+  R  
Sbjct: 73  TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLL 132

Query: 200 ------------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
                         S+K++   + E S P+ +Y++ + K++  +   +  + ++ +  A+
Sbjct: 133 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 192

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 31/185 (16%), Positives = 76/185 (41%), Gaps = 20/185 (10%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDI 141
            +G P A K      + +      +S   ++R +     S + + I   +  G++V  +I
Sbjct: 6   VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 65

Query: 142 IFGLLSKRLEDGYY--RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFI 195
              LL + ++        +  F++DG PR++   +  ++     A++  V+ F C +   
Sbjct: 66  TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 125

Query: 196 VTNRGG-------------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQG 242
           +                  SL+++++ Y + +KP+ D Y++  K+ +     +  E +  
Sbjct: 126 IERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDE 185

Query: 243 LLTAL 247
           ++   
Sbjct: 186 VVQIF 190

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (130), Expect = 8e-10
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 6/171 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS+DI+
Sbjct: 7   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 66

Query: 143 FGLLSKRL--EDGYYRGEI--GFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVT- 197
             ++   L        G I  GF        ++   + +Q   ++  +  K  D  +V  
Sbjct: 67  VNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 126

Query: 198 -NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
                +LK++L AY   ++P+ D+Y+K            P   W  +L  L
Sbjct: 127 ITNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 177

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 32/179 (17%), Positives = 78/179 (43%), Gaps = 15/179 (8%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K    E + +      +S   ++R ++S  S+  K ++  + +G++V  + +
Sbjct: 13  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV 72

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG- 201
             +L   +       + GF++DG PR   Q E  ++      ++ +  A    +T R   
Sbjct: 73  LDMLRDAMVAKVDTSK-GFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLK 131

Query: 202 -------------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247
                        ++K++LE Y + ++P+  +Y+K+  + +     +  + +  + T L
Sbjct: 132 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHL 190

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 21/173 (12%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K      + +      +S   ++RQ+    S   + IA  +  GE+V   + 
Sbjct: 11  VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD----QLAEIDLVVNFKCADNFIVT- 197
             LL   ++    +    F++DG PR+       +       +   V+ F C +  +   
Sbjct: 71  VKLLKNAIDANQGKN---FLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127

Query: 198 ------------NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238
                       +   S+K++   +   +K + D+Y K  K+      +  V 
Sbjct: 128 LLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP-ANRDVN 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	100.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.98
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.72
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.7
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.66
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.66
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.64
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.64
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.62
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.61
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.61
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.58
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.55
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.54
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.47
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.44
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.43
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.41
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.38
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.29
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.28
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.27
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.24
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.2
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.16
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.16
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.07
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.01
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.98
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.95
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.87
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.86
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.82
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.64
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.61
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.5
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.48
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.47
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.4
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.1
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.96
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.78
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.78
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.76
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.69
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.69
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.68
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.64
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.62
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.61
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.6
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.56
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.55
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.51
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.49
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.38
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.35
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.25
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.22
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.08
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.08
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.04
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.02
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.98
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.95
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.95
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.84
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.83
d1okkd2	207	GTPase domain of the signal recognition particle r	96.78
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.73
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.73
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.59
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.54
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.49
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.49
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.46
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.45
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.45
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.45
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.38
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	96.35
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.34
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.3
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.23
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.18
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.12
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.12
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.11
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.05
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.05
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.01
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.0
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.94
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.94
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.94
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.9
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.84
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.83
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.82
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.81
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.81
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.8
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.78
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.76
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.75
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.74
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.73
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.71
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.68
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.67
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.67
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.67
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.66
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.66
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.63
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.62
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.6
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.59
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.56
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.54
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.51
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.47
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.47
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.47
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.46
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.44
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.43
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.41
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.36
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.34
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.33
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.33
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.32
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.28
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.22
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.21
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.19
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.19
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.18
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.17
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.14
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.06
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.02
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.89
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.88
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.86
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.83
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.8
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.78
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.77
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.6
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.48
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.45
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.4
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.35
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.27
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.24
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.15
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.12
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.06
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.06
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.01
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.88
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.85
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.74
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.66
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.59
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.19
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.12
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.06
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.02
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.64
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.6
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.44
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.26
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.19
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.05
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.34
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.14
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.12
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.05
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.96
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.73
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.29
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.21
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.48
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.86
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.85
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	88.83
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.39
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.99
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	87.81
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.7
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.63
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.35
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.1
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.95
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.85
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.77
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.54
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	86.21
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	86.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.86
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	85.63
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	85.56
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.29
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.2
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	84.97
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.49
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.42
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.16
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.03
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.84
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	82.12
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	80.42

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=100.00  E-value=1.6e-35  Score=248.23  Aligned_cols=175  Identities=22%  Similarity=0.409  Sum_probs=163.2

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~  152 (268)
                      ++|.|.|+|+|+|||||||||+|+.||++||+.|||+|+++|+++...++.+..+++.+..|..+|++++..++.+++..
T Consensus         1 ~~~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~   80 (189)
T d2ak3a1           1 GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN   80 (189)
T ss_dssp             CCSSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhh
Confidence            35789999999999999999999999999999999999999999998999999999999999999999999999999887


Q ss_pred             CCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh---hHHHHHHHHHHHHHchHHHHHHHhCCcEEE
Q 024390          153 GYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR---GGSLKEKLEAYAELSKPLEDYYQKQKKLLE  229 (268)
Q Consensus       153 ~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl---~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~  229 (268)
                      .   ...|||+||||++..|++.|++...++.||+|+|+.+++.+|+   ++.+.+|++.|+++..++.+||++.+.++.
T Consensus        81 ~---~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~  157 (189)
T d2ak3a1          81 L---TQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLET  157 (189)
T ss_dssp             H---TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             h---hhcCcccccccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            4   4678999999999999999998888999999999999999999   457889999999999999999999899999


Q ss_pred             EeCCCCHHHHHHHHHHHHHhhc
Q 024390          230 FQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       230 Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      +|++ .++||+++|.+.|..+.
T Consensus       158 idg~-~~~eV~~~I~~~i~~~l  178 (189)
T d2ak3a1         158 FSGT-ETNKIWPHVYAFLQTKL  178 (189)
T ss_dssp             EECS-SHHHHHHHHHHHHHTTS
T ss_pred             ECCC-ChHHHHHHHHHHHHHHh
Confidence            9987 57999999999998764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=1.3e-33  Score=235.20  Aligned_cols=171  Identities=30%  Similarity=0.527  Sum_probs=158.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|||||||||+|+.||++||+.||++++++|++...++..+..+..++..|..+|++.+..++..++...  .
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~--~   79 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP--P   79 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG--G
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccc--c
Confidence            67899999999999999999999999999999999999988888999999999999999999999999999999875  3


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh----------hHHHHHHHHHHHHHchHHHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR----------GGSLKEKLEAYAELSKPLEDYY  221 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl----------~~~~~~rl~~y~~~~~~l~~~y  221 (268)
                      ..+|||+||||++..|+..|...     ..+.++++|+++++.+.+|+          ++.+++|++.|+++..++.+||
T Consensus        80 ~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y  159 (190)
T d1ak2a1          80 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYY  159 (190)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999988653     46789999999999999998          4578999999999999999999


Q ss_pred             HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          222 QKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .+.+.++.||++++++||+++|+++|..
T Consensus       160 ~~~~~~~~Id~~~s~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         160 SKRGIHSAIDASQTPDVVFASILAAFSK  187 (190)
T ss_dssp             HHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999975

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-33  Score=232.66  Aligned_cols=171  Identities=26%  Similarity=0.507  Sum_probs=157.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      .|+|+|+|||||||||+|+.||++||++||++++++++.....+.+|..++.++..|..+|++....++..++.+..+ .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~   80 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA-C   80 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG-G
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcc-c
Confidence            478999999999999999999999999999999999999888999999999999999999999999999888887643 5


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh--hHHHHHHHHHHHHHchHHHHHHHhCCcEEEE
Q 024390          158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR--GGSLKEKLEAYAELSKPLEDYYQKQKKLLEF  230 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl--~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~I  230 (268)
                      ..|||+||||++..|++.++++     ..|+++|+|+++++++.+|+  .+.+.+|++.|++++.++.++|++.+.++.|
T Consensus        81 ~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~~~~~r~~~y~~~~~~v~~~y~~~~~~~~I  160 (180)
T d1akya1          81 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKRLAAYHAQTEPIVDFYKKTGIWAGV  160 (180)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEE
T ss_pred             cCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccccccchHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            7899999999999999887653     46899999999999999999  4567899999999999999999998999999


Q ss_pred             eCCCCHHHHHHHHHHHHHh
Q 024390          231 QVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       231 da~~s~eev~~~I~~~L~~  249 (268)
                      |+++++++|+++|+++|..
T Consensus       161 d~~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         161 DASQPPATVWADILNKLGK  179 (180)
T ss_dssp             ETTSCHHHHHHHHHHHHTC
T ss_pred             ECCCCHHHHHHHHHHHHcc
Confidence            9999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=100.00  E-value=5.3e-33  Score=230.25  Aligned_cols=170  Identities=24%  Similarity=0.428  Sum_probs=156.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|||||||||+|+.||++||++||++++++|++....++.|..+++.+.+|..+|+.....++..++....  ..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~--~~   78 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSD--CD   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSST--TS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccc--cc
Confidence            6899999999999999999999999999999999999988889999999999999999999999999999987763  47


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHHchHHHHHHHhCCcEE
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAELSKPLEDYYQKQKKLL  228 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~~~~l~~~y~~~~~l~  228 (268)
                      .+||+||||++..|+..|.+.     ..+.++++++++.+.+.+|+     ++.+++|++.|++++.++.+||++.+.++
T Consensus        79 ~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~  158 (182)
T d1s3ga1          79 NGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLV  158 (182)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            899999999999999988753     35678999999999999997     56789999999999999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHHHHHhh
Q 024390          229 EFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       229 ~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .|||++++++|+++|.++|...
T Consensus       159 ~Id~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         159 NINGQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             EEECSSCHHHHHHHHHHHHTCC
T ss_pred             EEECCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5.3e-33  Score=232.63  Aligned_cols=172  Identities=17%  Similarity=0.339  Sum_probs=159.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++++|+|+|||||||||+|+.|+++||++||++|+++|+.+...+..+..+.+.+..|..+|++++..++..++....+ 
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-   85 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD-   85 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc-
Confidence            5678999999999999999999999999999999999999988899999999999999999999999999999987643 


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYYQ  222 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y~  222 (268)
                      ..+|||+||||++..|++.+++. ..+..+++++++.+++.+|.             ++.+++|++.|++++.++.+||+
T Consensus        86 ~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~  165 (194)
T d3adka_          86 TSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE  165 (194)
T ss_dssp             TCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHHT
T ss_pred             ccccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999764 67899999999999999997             34688999999999999999999


Q ss_pred             hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          223 KQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       223 ~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +.+.++.|||+++++||+++|++.|+.
T Consensus       166 ~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         166 KRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             TTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            888999999999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-33  Score=232.05  Aligned_cols=167  Identities=26%  Similarity=0.495  Sum_probs=153.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|||||||||+|+.|++++|+.||++++++++....+++.++.+++++.+|..+|++++..++..++....  ..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~--~~   78 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR   78 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccc--cc
Confidence            6899999999999999999999999999999999999988888999999999999999999999999998887653  46


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHHchHHHHHHHhC-----CcE
Q 024390          159 IGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAELSKPLEDYYQKQ-----KKL  227 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~~~~l~~~y~~~-----~~l  227 (268)
                      +|||+||||++..|+..+.+. ..|++||+|+||++++.+|+     ++.+++|++.|+++..++.++|.+.     .++
T Consensus        79 ~g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~  158 (179)
T d1e4va1          79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKY  158 (179)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEE
T ss_pred             cceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcE
Confidence            899999999999999998776 57999999999999999998     4578999999999999999999753     368


Q ss_pred             EEEeCCCCHHHHHHHHHHHH
Q 024390          228 LEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       228 ~~Ida~~s~eev~~~I~~~L  247 (268)
                      +.|||+++++||+++|+++|
T Consensus       159 ~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         159 AKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             EEEETTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHh
Confidence            99999999999999999887

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-32  Score=228.27  Aligned_cols=176  Identities=20%  Similarity=0.389  Sum_probs=157.3

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      |...++|+|+|||||||||+|+.|+++||+.|||+|+++|.+. ..++.+++.++.+...|.+.++.....++..++...
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   84 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhh
Confidence            4567789999999999999999999999999999999999865 456789999999999999999998888887776654


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHH
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLED  219 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~  219 (268)
                      .+....+||+||||++..|+..+... ..++.+++|+++++++++|+             .+.+++|++.|+++..++.+
T Consensus        85 ~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~  164 (196)
T d1ukza_          85 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIE  164 (196)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHH
T ss_pred             hccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            33356899999999999999988765 68999999999999999997             34689999999999999999


Q ss_pred             HHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          220 YYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      ||++.+.++.||++++++|||++|+++|..+
T Consensus       165 ~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         165 YFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             HHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            9998889999999999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=2.6e-32  Score=227.81  Aligned_cols=171  Identities=18%  Similarity=0.295  Sum_probs=156.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ++.+|+|+|||||||||+|+.||++||+.||++|+++|++...+...+..++..+..|...+++....++..++...   
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   81 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN---   81 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhh---
Confidence            56789999999999999999999999999999999999998888889999999999999999999999988888764   


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHH
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLED  219 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~  219 (268)
                      ...+||+||||++..|++.+++.    ..|+++|+|+||++++.+|+             .+.+++|++.|+++..++.+
T Consensus        82 ~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~  161 (194)
T d1qf9a_          82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID  161 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred             hcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999888754    46889999999999999997             34578999999999999999


Q ss_pred             HHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          220 YYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      +|++.+.++.||+++++++|+++|.++|...
T Consensus       162 ~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         162 HYNKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999998864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-32  Score=224.74  Aligned_cols=173  Identities=18%  Similarity=0.392  Sum_probs=154.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC-CCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc-
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY-  155 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~-~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~-  155 (268)
                      |++|+|+|||||||||+|+.||++||+.||++|+++|++.. ..++.++.+.+.+.+|..+|++.+..++..++....+ 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            58899999999999999999999999999999999998763 4678899999999999999999999998887765321 


Q ss_pred             -cCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHH
Q 024390          156 -RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPL  217 (268)
Q Consensus       156 -~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l  217 (268)
                       ....+|++||||++..|++.++..    ..++.+++++++.+++.+|+             .+.+++|+..|++++.++
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l  160 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPI  160 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence             246899999999999999988764    36788999999999999987             346789999999999999


Q ss_pred             HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .++|++.+.++.|||+++++||+++|+++|..+
T Consensus       161 ~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k~  193 (194)
T d1teva_         161 IDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKE  193 (194)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHhcC
Confidence            999999899999999999999999999999865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=2e-31  Score=220.32  Aligned_cols=166  Identities=27%  Similarity=0.476  Sum_probs=151.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|||||||||+|+.|+++||+.||+++++++++....++++..+...+++|+.+++++...++..++....  ..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~   78 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD--AA   78 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcc--cc
Confidence            6899999999999999999999999999999999999988889999999999999999999999999999887753  46


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------hHHHHHHHHHHHHHchHHHHHHHhC
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------GGSLKEKLEAYAELSKPLEDYYQKQ  224 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------~~~~~~rl~~y~~~~~~l~~~y~~~  224 (268)
                      .+||+||||++..|+..+...     ..|+++++|+++++++.+|+         ++.+++|++.|+++..++.++|.+ 
T Consensus        79 ~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~-  157 (181)
T d2cdna1          79 NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRD-  157 (181)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTT-
T ss_pred             ccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            799999999999999888653     37899999999999999999         346789999999999999999964 


Q ss_pred             CcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          225 KKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       225 ~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                       .++.|||+++++||+++|+++|.
T Consensus       158 -~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         158 -QLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             -TEEEEECCSCHHHHHHHHHHHTT
T ss_pred             -CeEEEECCCCHHHHHHHHHHHhC
Confidence             68899999999999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=4.7e-31  Score=217.14  Aligned_cols=169  Identities=24%  Similarity=0.443  Sum_probs=155.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      |+|+|+|||||||||+|+.||++||+.||+++++++++....++.+..+++++.+|+.+|+.....++.+++....  ..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   78 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDD--CQ   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchh--hh
Confidence            6899999999999999999999999999999999999888888999999999999999999999999988887663  46


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHHchHHHHHHHhCCcEE
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAELSKPLEDYYQKQKKLL  228 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~~~~l~~~y~~~~~l~  228 (268)
                      .+|+++|+|+...+...++..     ..++++++|+++.+.+.+|+     ++.+++|++.|+++..++.++|++.+.++
T Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~  158 (182)
T d1zina1          79 NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLR  158 (182)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHTHHHHHHHHHTCEE
T ss_pred             cCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            899999999999988877653     46889999999999999998     46789999999999999999999988999


Q ss_pred             EEeCCCCHHHHHHHHHHHHHh
Q 024390          229 EFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       229 ~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .|||++++++|+++|.++|..
T Consensus       159 ~Id~~~~~eeV~~~I~~~L~~  179 (182)
T d1zina1         159 NINGEQDMEKVFADIRELLGG  179 (182)
T ss_dssp             EEECSSCHHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHh
Confidence            999999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=6.8e-31  Score=218.65  Aligned_cols=170  Identities=22%  Similarity=0.354  Sum_probs=152.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      .||+|+|+|||||||||+|+.|+++||++||++++++++......+....+.+.+..|...+.+.....+...+....+ 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA-   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccc-
Confidence            4678999999999999999999999999999999999999888888899999999999999999887777777665422 


Q ss_pred             CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHHchHHHHHHHhCCcEEEE
Q 024390          157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAELSKPLEDYYQKQKKLLEF  230 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~I  230 (268)
                      ..+|||+||||++..|+..|+.. ..|+.+|+|+++++++.+|+     ++.+++|++.|+++..++.++|+  +.++.|
T Consensus        81 ~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y~--~~~~~I  158 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYE--NIIVKV  158 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHTTC--CCEEEE
T ss_pred             ccCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhC--CCEEEE
Confidence            45789999999999999999876 57999999999999999998     56789999999999999999984  678999


Q ss_pred             eCCCCHHHHHHHHHHHHHh
Q 024390          231 QVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       231 da~~s~eev~~~I~~~L~~  249 (268)
                      |+++++++|+++|.++|..
T Consensus       159 d~~~~idev~~~I~~~l~~  177 (189)
T d1zaka1         159 QGDATVDAVFAKIDELLGS  177 (189)
T ss_dssp             ECSSCHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHHH
Confidence            9999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.72  E-value=5.9e-17  Score=131.43  Aligned_cols=150  Identities=13%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      .|+|+|+|||||||+|+.||+++|++++|+|+++++..      |..+.+.+. .|...    ..+...+.+...  ...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~------g~~i~ei~~~~g~~~----~~~~~~~~l~~~--~~~   71 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS------GMTVADVVAAEGWPG----FRRRESEALQAV--ATP   71 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH------CSCHHHHHHHHHHHH----HHHHHHHHHHHH--CCS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh------hhhhhhhhcccchHH----HHHHHHHHHHhh--ccc
Confidence            37889999999999999999999999999999987653      222333333 23222    222333333332  123


Q ss_pred             cEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------------HHHHHHHHHHHchHHHHHHHh
Q 024390          159 IGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------------LKEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       159 ~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------------~~~rl~~y~~~~~~l~~~y~~  223 (268)
                      .+++..  |.+......+.+..   ...+|||++|.+++.+|+...             ..+.++...++..   .+|++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~l~~---~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~---~lY~~  145 (170)
T d1e6ca_          72 NRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLRERE---ALYQD  145 (170)
T ss_dssp             SEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             cceecccccchhhhHHHHhhhc---cceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHH---HHHHH
Confidence            344443  34444444444443   346999999999999998321             2233333333333   34554


Q ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          224 QKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       224 ~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      ... ++||+++++++++++|.+.|.
T Consensus       146 ~a~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         146 VAH-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             HCS-EEEETTSCHHHHHHHHHHHTT
T ss_pred             cCC-EEEcCCCCHHHHHHHHHHHcC
Confidence            333 468999999999999987764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.9e-17  Score=131.85  Aligned_cols=152  Identities=9%  Similarity=0.043  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSK  148 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~  148 (268)
                      ..+.+|+|+|+|||||||+|+.|++++|+.+++.+++......          .....+.....+       .+...+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI----------EKMASGEPLNDDDRKPWLQALNDAAFA   73 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHh----------hhhccCcceehhhhHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999876544321          111122211111       11122222


Q ss_pred             HHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH---------HHHHHHHHHHHchHHHH
Q 024390          149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS---------LKEKLEAYAELSKPLED  219 (268)
Q Consensus       149 ~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~---------~~~rl~~y~~~~~~l~~  219 (268)
                      .+.     ...++++++........+.+.+...+..+|+|+||++++.+|+..+         ++.+++.|+.       
T Consensus        74 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~e~-------  141 (171)
T d1knqa_          74 MQR-----TNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQE-------  141 (171)
T ss_dssp             HHH-----HCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCC-------
T ss_pred             HHh-----ccCceEeeccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCccHHHHHhhHHHhhC-------
Confidence            222     2344555443333445566666677778999999999999999322         2222222111       


Q ss_pred             HHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          220 YYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      .+.....++.||+++++|+++++|+++|++
T Consensus       142 ~~~~e~~~~~id~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         142 PGADETDVLVVDIDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             CCTTCTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             CCcccCCEEEEeCCCCHHHHHHHHHHHhcC
Confidence            111233578899999999999999999863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-15  Score=125.96  Aligned_cols=165  Identities=14%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH---------
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF---------  143 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~---------  143 (268)
                      +||+.|+|+|++||||||+++.|++.+   |+.++-+.     +....++.++.+++.+.....++.....         
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~   75 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE   75 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHH
Confidence            478899999999999999999999987   45444331     1223456777777777665544433221         


Q ss_pred             --HHHHHHHHcCCccCccEEEEcCCcCCHH--H-------HHHHHh----hcCCCeEEEEecCHHHHHhhhhHHHHHHH-
Q 024390          144 --GLLSKRLEDGYYRGEIGFILDGLPRSRI--Q-------AEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKL-  207 (268)
Q Consensus       144 --~ll~~~l~~~~~~~~~g~IlDGfPr~~~--q-------a~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl-  207 (268)
                        ..+...+.     .+..+|+|.|+.+..  |       ...+..    +..||++|+|++|++++.+|....- .++ 
T Consensus        76 ~~~~i~~~l~-----~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~-~~~E  149 (209)
T d1nn5a_          76 QVPLIKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH-ERYE  149 (209)
T ss_dssp             THHHHHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CTTC
T ss_pred             HHHhHHHHhh-----cccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccc-cccc
Confidence              22222232     356688898753321  1       011221    2579999999999999999983210 111 


Q ss_pred             -HHHHHHchH-HHHHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          208 -EAYAELSKP-LEDYYQKQ-KKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       208 -~~y~~~~~~-l~~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                       ..|.+.... -.+.+++. +.++.||+++++++|.++|+.++....
T Consensus       150 ~~~~~~r~~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l  196 (209)
T d1nn5a_         150 NGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAI  196 (209)
T ss_dssp             SHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence             112221111 11222222 368999999999999999999887653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.66  E-value=7.5e-16  Score=123.62  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=93.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~-~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      ++++|+|+|+|||||||+|+.|+++++ +.+++.+++.+.........       ...+.....+.....+.+.+.... 
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i-   75 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDFMEPIM-   75 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHHHHhhh-
Confidence            789999999999999999999999996 57777777666543322111       111222222323333333333221 


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHHHH--HHHHHHchHHHHHHHhCCcE
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKL--EAYAELSKPLEDYYQKQKKL  227 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~rl--~~y~~~~~~l~~~y~~~~~l  227 (268)
                      ..+.+++++++++...      ....++.+|+|+|+++++.+|+..+      ...+.  +.+.....+..+.|.. ..+
T Consensus        76 ~~~~~~~~~~~~~~~~------~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~  148 (174)
T d1y63a_          76 VSRGNHVVDYHSSELF------PERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYED-DIV  148 (174)
T ss_dssp             TSSSEEEEECSCCTTS------CGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCG-GGE
T ss_pred             hhcccccccHHHHHHH------HHhcCceEEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhcC-CEE
Confidence            2467888898876432      1135678999999999999998432      11111  1222222334444532 234


Q ss_pred             EEEeCCCCHHHHHHHHHHHHHh
Q 024390          228 LEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       228 ~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +.. .+.+++++.+.|.+++..
T Consensus       149 i~~-~~~t~ee~~~~V~~I~~~  169 (174)
T d1y63a_         149 LVR-ENDTLEQMAATVEEIRER  169 (174)
T ss_dssp             EEE-ECSSHHHHHHHHHHHHHH
T ss_pred             EEC-CCCCHHHHHHHHHHHHHH
Confidence            333 478899998888877653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.66  E-value=2.3e-16  Score=127.11  Aligned_cols=149  Identities=12%  Similarity=0.169  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc-cHHHHHHHHHHHHHcCCccCc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-SEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i-p~~~~~~ll~~~l~~~~~~~~  158 (268)
                      .|+|+|+|||||||+|+.||+++|++++|+|+++++...      ..+.+.+...... ..+.... +...+..    .+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g------~~i~~~~~~~g~~~~r~~e~~-v~~~l~~----~~   70 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN------QKVSEIFEQKRENFFREQEQK-MADFFSS----CE   70 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT------SCHHHHHHHHCHHHHHHHHHH-HHHHHTT----CC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHh------hhhhhHHHhhhhccchhhhhh-hchhhhh----cc
Confidence            489999999999999999999999999999999877642      2233333322211 1122222 2233332    23


Q ss_pred             cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-H--------HHHHHHHHHHchHHHHHHHhCCcEEE
Q 024390          159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-L--------KEKLEAYAELSKPLEDYYQKQKKLLE  229 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-~--------~~rl~~y~~~~~~l~~~y~~~~~l~~  229 (268)
                      ..++..|-.  ...   ...+...+.+|||++|.+++.+|+..+ .        ...++.   ........|.+... +.
T Consensus        71 ~~v~~~~g~--~~~---~~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~---l~~~r~~~Y~~~ad-~~  141 (161)
T d1viaa_          71 KACIATGGG--FVN---VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK---LYNERLSKYEQKAN-FI  141 (161)
T ss_dssp             SEEEECCTT--GGG---STTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH---HHHHHHHHHHHHCS-EE
T ss_pred             ccccccccc--hhh---HHHHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHH---HHHHHHHHHHhhCC-EE
Confidence            334333311  111   112345678999999999999998221 0        111221   11122333443323 34


Q ss_pred             EeC-CCCHHHHHHHHHHHHH
Q 024390          230 FQV-GSAPVETWQGLLTALH  248 (268)
Q Consensus       230 Ida-~~s~eev~~~I~~~L~  248 (268)
                      ||. +.+++|+.++|.++|.
T Consensus       142 Idt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         142 LNIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             EECTTCCHHHHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHHhC
Confidence            675 4799999999998873

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=6.3e-16  Score=124.64  Aligned_cols=154  Identities=19%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      ++|+|+|+|||||||+|+.||+++|++++++|+.+.+...      ..+.+.+. .|.....+...+.+...+..     
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g------~~i~~~~~~~g~~~~r~~e~~~~~~~~~~-----   70 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG------RSIADIFATDGEQEFRRIEEDVVRAALAD-----   70 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS------SCHHHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh------hhhhhhhhhhhHHHHHHHHhhhhhhcccc-----
Confidence            3588889999999999999999999999999998877532      22333322 23333344444555554443     


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-----H--HHHHHHHHHHchHHHHHHHhCCcEEEE
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-----L--KEKLEAYAELSKPLEDYYQKQKKLLEF  230 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-----~--~~rl~~y~~~~~~l~~~y~~~~~l~~I  230 (268)
                      .++++..|.+....  +..........+|||+++.+++++|+...     +  ....+.+++.......+|++... +.|
T Consensus        71 ~~~vi~~gg~~~~~--~~~~~~l~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~~ad-~~I  147 (165)
T d2iyva1          71 HDGVLSLGGGAVTS--PGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVAT-MRV  147 (165)
T ss_dssp             CCSEEECCTTGGGS--HHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCS-EEE
T ss_pred             cccccccccccccc--ccccccccccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHhhCC-EEE
Confidence            33455544322111  11222234567899999999999998321     0  01111222222222344654322 467


Q ss_pred             eCC-CCHHHHHHHHHHH
Q 024390          231 QVG-SAPVETWQGLLTA  246 (268)
Q Consensus       231 da~-~s~eev~~~I~~~  246 (268)
                      |++ .+++|+.++|.+.
T Consensus       148 dt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1         148 DTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             ECSSSCHHHHHHHHHTT
T ss_pred             ECCCCCHHHHHHHHHhc
Confidence            764 6999999998764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1e-15  Score=128.04  Aligned_cols=164  Identities=10%  Similarity=0.058  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc-----cHH--------
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-----SED--------  140 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i-----p~~--------  140 (268)
                      ||+.|+|.|++||||||+++.|++++   |+.++-.   .  ..+.++..++.+++.+..+...     ...        
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~--~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---T--REPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---E--ESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---e--cCCCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            57889999999999999999999987   4433211   0  1234556777777766544321     111        


Q ss_pred             ----HHHHHHHHHHHcCCccCccEEEEcCCcCC------------HHHHHHHHh----hcCCCeEEEEecCHHHHHhhhh
Q 024390          141 ----IIFGLLSKRLEDGYYRGEIGFILDGLPRS------------RIQAEILDQ----LAEIDLVVNFKCADNFIVTNRG  200 (268)
Q Consensus       141 ----~~~~ll~~~l~~~~~~~~~g~IlDGfPr~------------~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~  200 (268)
                          .....+...+.     .+..+|.|.+..+            ......+..    ...||++|+|++|++++.+|+.
T Consensus        76 ~~~~~~~~~i~~~l~-----~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~  150 (210)
T d4tmka_          76 ARVQLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR  150 (210)
T ss_dssp             HHHHHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-----cCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhh
Confidence                11112222332     3455677754321            111222222    2479999999999999999983


Q ss_pred             HHH-----HHHHHHHHHHchH-HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          201 GSL-----KEKLEAYAELSKP-LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       201 ~~~-----~~rl~~y~~~~~~-l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                      .+-     +..-..|.+.... ..+++.+...++.||+++++++|+++|.+.|...
T Consensus       151 ~R~~~~~~~~~~~~~~~~v~~~y~~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~  206 (210)
T d4tmka_         151 ARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW  206 (210)
T ss_dssp             HHSSCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhccHHHHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            321     1111123222211 2233444557899999999999999999988753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.62  E-value=1e-15  Score=124.06  Aligned_cols=166  Identities=10%  Similarity=0.086  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC-----ccchhHHHHhhcCCCChh--HHHHHHH-HhccCcccHHHHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQDLSPRSSL--HKQIANA-VNRGEVVSEDIIFGLLSKRL  150 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~-----~is~~dlir~~~~~~~~~--g~~i~~~-l~~G~~ip~~~~~~ll~~~l  150 (268)
                      ++|+|.|+|||||||+++.|+++++..     +++.++.++.........  ....... .......... ....+.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   80 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQID-AAKGIAEEA   80 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHH-HHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHH-HHHHHHHHH
Confidence            567889999999999999999998643     456677665543221100  0000000 0000001111 112222222


Q ss_pred             HcCCccCccEEEEcCCcCCHHHH-------HHHHhhcCCCeEEEEecCHHHHHhhhh------------HHHHHHHHHHH
Q 024390          151 EDGYYRGEIGFILDGLPRSRIQA-------EILDQLAEIDLVVNFKCADNFIVTNRG------------GSLKEKLEAYA  211 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGfPr~~~qa-------~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------~~~~~rl~~y~  211 (268)
                      ..   ....++++|+++....+.       ..+.....|+.+|+|+++++++.+|+.            +...+++..+.
T Consensus        81 ~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~  157 (194)
T d1nksa_          81 RA---GGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFA  157 (194)
T ss_dssp             HH---TCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHH
T ss_pred             HH---hCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence            22   245677777665432111       122233579999999999999999972            34455666666


Q ss_pred             HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      +........+.....++..+++.+++|++++|.+.|+
T Consensus       158 ~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         158 RYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             HHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            6655555545444444455577999999999998874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.61  E-value=1.1e-15  Score=123.15  Aligned_cols=166  Identities=10%  Similarity=0.039  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC-----ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~-----~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      ++|+|.|+|||||||+++.|+++|+..     .++.++..+..........  ....+................+.+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS--DRDQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS--SGGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhh--hhhhhhhhhchhhHHHHHHHHHHHHHH
Confidence            579999999999999999999988543     4556776665432100000  000000000001111122222233222


Q ss_pred             CccCccEEEEcCCcCCHHHH-------HHHHhhcCCCeEEEEecCHHHHHhhhh-----------HHHHHHHHHHHHHch
Q 024390          154 YYRGEIGFILDGLPRSRIQA-------EILDQLAEIDLVVNFKCADNFIVTNRG-----------GSLKEKLEAYAELSK  215 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa-------~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-----------~~~~~rl~~y~~~~~  215 (268)
                        .....+++|+++.+..+.       ..+.....++.+|+|+++++++.+|+.           ....++...++....
T Consensus        80 --~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (190)
T d1khta_          80 --AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAA  157 (190)
T ss_dssp             --HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             --hCCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHH
Confidence              245678999887643211       122334579999999999999999972           123344444444444


Q ss_pred             HHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390          216 PLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH  248 (268)
Q Consensus       216 ~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~  248 (268)
                      .....+......+.++++.++||++++|.++|+
T Consensus       158 ~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         158 MSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            444444433334455678999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.61  E-value=1.6e-15  Score=126.97  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      +.++|.|.|||||||||+|+.||++||++|+|+|+++|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            4567889999999999999999999999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.58  E-value=1.1e-14  Score=116.10  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~  157 (268)
                      .|+|+|+|+|||||||+|+.|++++|+++++++++++.........      ....+.....+.+...+.....      
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------   71 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD------EEYDCPILDEDRVVDELDNQMR------   71 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCC------SSSSCCCBCHHHHHHHHHHHHH------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchh------HHhhhhhHHHHHHHHHhhhhhh------
Confidence            4679999999999999999999999999999999998753211100      0011222333333333333332      


Q ss_pred             ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HH--HHHHHHHHHchHHHHHHHhCCcEEE
Q 024390          158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LK--EKLEAYAELSKPLEDYYQKQKKLLE  229 (268)
Q Consensus       158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~--~rl~~y~~~~~~l~~~y~~~~~l~~  229 (268)
                      ..+..++++.....      .....+.+|+|+|+++++.+|+..+      ..  ...+.+.....+..++|.. ...+.
T Consensus        72 ~~~~~~~~~~~~~~------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~i~  144 (173)
T d1rkba_          72 EGGVIVDYHGCDFF------PERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKE-EIVHQ  144 (173)
T ss_dssp             HCCEEEECSCCTTS------CGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCG-GGEEE
T ss_pred             cCCcccchhHHHHH------HHhcCCCcceecCCHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHhhh-ccEEE
Confidence            33455555543211      1134678999999999999999432      11  1222333333445555543 34666


Q ss_pred             EeCCCCHHHHHHHHHHHH
Q 024390          230 FQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       230 Ida~~s~eev~~~I~~~L  247 (268)
                      ++. .+++++.+.|.+++
T Consensus       145 ~~~-~~~~~~~~~i~~Ii  161 (173)
T d1rkba_         145 LPS-NKPEELENNVDQIL  161 (173)
T ss_dssp             EEC-SSHHHHHHHHHHHH
T ss_pred             ECC-CCHHHHHHHHHHHH
Confidence            774 45555555554444

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.55  E-value=9.9e-15  Score=116.09  Aligned_cols=158  Identities=9%  Similarity=-0.035  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~  158 (268)
                      +.|+|.|+|||||||+|+.|++.++..++..+|.++.....+.........    +...........+...+.     .+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~   73 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE----LLALTWKNITDLTVNFLL-----AQ   73 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHH----HHHHHHHHHHHHHHHHHH-----TT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHH----HHHHHHHHHHHHHHHHHh-----cC
Confidence            579999999999999999999999988777778887765433211110000    000111222333333333     46


Q ss_pred             cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhhHHH------HHHHHHHHHHchHHHHHHHhCCcE
Q 024390          159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGGSL------KEKLEAYAELSKPLEDYYQKQKKL  227 (268)
Q Consensus       159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~~~~------~~rl~~y~~~~~~l~~~y~~~~~l  227 (268)
                      .++|+|+......+...+...     ..+..+++|+++.+++.+|+.++-      .+.++.+.    ...+..  ....
T Consensus        74 ~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~----~~~~~~--~~~~  147 (176)
T d2bdta1          74 NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVE----EFESKG--IDER  147 (176)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHH----HHHHTT--CCTT
T ss_pred             CCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHHHHHH----HHHhCC--CCCe
Confidence            789999887665544433321     234468999999999999984321      11111111    111111  1122


Q ss_pred             EEEeC-CCCHHHHHHHHHHHHHhhc
Q 024390          228 LEFQV-GSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       228 ~~Ida-~~s~eev~~~I~~~L~~~~  251 (268)
                      +.||. +.+++++.+.|.+++....
T Consensus       148 ~~id~~~~~~~~~~~~I~~i~~~~r  172 (176)
T d2bdta1         148 YFYNTSHLQPTNLNDIVKNLKTNPR  172 (176)
T ss_dssp             SEEECSSSCGGGHHHHHHHHHHCGG
T ss_pred             EEEECCCCCHHHHHHHHHHHHhcCC
Confidence            34565 4689999999999997653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=8.9e-15  Score=121.80  Aligned_cols=39  Identities=15%  Similarity=0.108  Sum_probs=36.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~  116 (268)
                      .++|+|.|||||||||+|+.|+++||++|||+|+++|..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~   41 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   41 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            358999999999999999999999999999999999986

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.47  E-value=1.8e-13  Score=107.42  Aligned_cols=117  Identities=12%  Similarity=0.030  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH-hCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~-l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~  156 (268)
                      ...|+|.|+|||||||+|+.|++. .|+.+++.+++.+.........+..... ..  ..........++...+...  .
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~--~   76 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTK-KK--EGIVTGMQFDTAKSILYGG--D   76 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCH-HH--HHHHHHHHHHHHHHHHTSC--S
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhh-hh--hHHHHHHHHHHHHHHHHhh--c
Confidence            346889999999999999998654 5899999998876654322110000000 00  0011233445555555554  2


Q ss_pred             CccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhh
Q 024390          157 GEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       157 ~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ....+|+|+..........+..    ......+|+|++|.|++.+|+
T Consensus        77 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~  123 (152)
T d1ly1a_          77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN  123 (152)
T ss_dssp             SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHH
T ss_pred             cCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHH
Confidence            4567899987776655444433    344567999999999999998

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=2.6e-12  Score=107.82  Aligned_cols=165  Identities=16%  Similarity=0.168  Sum_probs=91.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc-ccHHHH-HHHHHHH-----
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-VSEDII-FGLLSKR-----  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-ip~~~~-~~ll~~~-----  149 (268)
                      +|+.|+|.|+.||||||+++.|++++.....    +++ ....+++.|+.+++.+..... +++... .-...++     
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~----~~~-~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK----LLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEE----EEE-SSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCE----EEE-ECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999864322    111 223456788888888765432 222211 1111111     


Q ss_pred             -HHcCCccCccEEEEcCCcCCHH--HH---------HHHHh----hcCCCeEEEEecCHHHHHhhhhH---------HHH
Q 024390          150 -LEDGYYRGEIGFILDGLPRSRI--QA---------EILDQ----LAEIDLVVNFKCADNFIVTNRGG---------SLK  204 (268)
Q Consensus       150 -l~~~~~~~~~g~IlDGfPr~~~--qa---------~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~---------~~~  204 (268)
                       +... ...+..+|.|.|..+..  |.         ..+..    ...||++|+|+++++....|..+         .+.
T Consensus        77 ~i~~~-l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~~e~~~~~  155 (214)
T d1tmka_          77 KIKKD-LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQ  155 (214)
T ss_dssp             HHHHH-HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSSTTCCHHHH
T ss_pred             HHHHH-HhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhhhhhHHHH
Confidence             1110 12356788897643311  11         11111    24899999999999888887621         222


Q ss_pred             HHH-HHHHHHchHHHHHHHh-CCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390          205 EKL-EAYAELSKPLEDYYQK-QKKLLEFQVG-SAPVETWQGLLTALHLQ  250 (268)
Q Consensus       205 ~rl-~~y~~~~~~l~~~y~~-~~~l~~Ida~-~s~eev~~~I~~~L~~~  250 (268)
                      +++ +.|.+...   .+... ...++.||++ .++++|.++|++.+...
T Consensus       156 ~~v~~~Y~~l~~---~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~  201 (214)
T d1tmka_         156 EKVKQTFMKLLD---KEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV  201 (214)
T ss_dssp             HHHHHHHHHHHH---HHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            332 23333221   11121 3468889975 79999999998888754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=9.2e-14  Score=109.04  Aligned_cols=155  Identities=12%  Similarity=0.067  Sum_probs=81.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~  159 (268)
                      .|+|+|+|||||||+|+.||+++|+++++.++.............   ...  .+.. ..............    ....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~~~~~~~----~~~~   73 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWV---FDL--EGEE-GFRDREEKVINELT----EKQG   73 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHH---HHH--HHHH-HHHHHHHHHHHHHH----TSSS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccch---hhh--hhhh-HHHHHHHHHHHhhc----cccc
Confidence            589999999999999999999999999999887766543221111   100  0100 00111111111111    1234


Q ss_pred             EEEEcCCcC--CHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH--------HHHHHHHHHHchHHHHHHHhCCcEEE
Q 024390          160 GFILDGLPR--SRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELSKPLEDYYQKQKKLLE  229 (268)
Q Consensus       160 g~IlDGfPr--~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~y~~~~~l~~  229 (268)
                      .++..+...  .......+   ......+++.++...+..|.....        ......+..........|.+... ++
T Consensus        74 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~d-~~  149 (169)
T d1kaga_          74 IVLATGGGSVKSRETRNRL---SARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIAD-VT  149 (169)
T ss_dssp             EEEECCTTGGGSHHHHHHH---HHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCS-EE
T ss_pred             eEeeccchhhhhhhhhHHh---hhcceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccCC-EE
Confidence            444444332  22222222   234679999999999999983210        00011111122222334443322 45


Q ss_pred             EeC-CCCHHHHHHHHHHHHH
Q 024390          230 FQV-GSAPVETWQGLLTALH  248 (268)
Q Consensus       230 Ida-~~s~eev~~~I~~~L~  248 (268)
                      ||+ +.+++|++++|.+.|+
T Consensus       150 Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         150 IRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             C-----CHHHHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHHhC
Confidence            776 4699999999998873

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.41  E-value=2.9e-14  Score=114.16  Aligned_cols=155  Identities=17%  Similarity=0.120  Sum_probs=91.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch-hHHHHhhcCCCC-----hh-HHHHHHHHhccCcccHHHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM-SSIVRQDLSPRS-----SL-HKQIANAVNRGEVVSEDIIFGLLSKR  149 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~-~dlir~~~~~~~-----~~-g~~i~~~l~~G~~ip~~~~~~ll~~~  149 (268)
                      .|..|+|.|+|||||||+|+.|++++|.+++++ +|.++..+....     .. .......        .......+...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~   74 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI--------MQIAADVAGRY   74 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH--------HHHHHHHHHHH
Confidence            567899999999999999999999999988765 356666543221     00 1100000        01111222222


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH------HHHHHHHHHHchHHHHHHHh
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL------KEKLEAYAELSKPLEDYYQK  223 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~------~~rl~~y~~~~~~l~~~y~~  223 (268)
                      +     .....+|+|+.++... ...+........+++|+|+++++.+|+.++-      ........+.....    ..
T Consensus        75 ~-----~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~----~~  144 (176)
T d1zp6a1          75 A-----KEGYFVILDGVVRPDW-LPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL----GA  144 (176)
T ss_dssp             H-----HTSCEEEECSCCCTTT-THHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCC----GG
T ss_pred             H-----hcCCCeEecccccHHH-HHHHHhcccccccccCCCCHHHHHHHHHhCCCccccchhhHHHHHHHHhhc----cc
Confidence            2     2366789998765432 3334444556788999999999999984321      11112222221111    11


Q ss_pred             CCcEEEEe-CCCCHHHHHHHHHHHHHhh
Q 024390          224 QKKLLEFQ-VGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       224 ~~~l~~Id-a~~s~eev~~~I~~~L~~~  250 (268)
                      ... +.|| ++.+++++.++|.+.|...
T Consensus       145 ~~~-~~idt~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         145 FEH-HVLPVSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             GGG-GEEECTTCCTTTTTTTTHHHHHHT
T ss_pred             ccC-EEEECCCCCHHHHHHHHHHHHHcC
Confidence            112 2355 4678999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=5.7e-12  Score=103.92  Aligned_cols=160  Identities=17%  Similarity=0.107  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----HHHHHHHHHH-HH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDIIFGLLSK-RL  150 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----~~~~~~ll~~-~l  150 (268)
                      |+|+|.|++||||||+++.|++++   |..++-+    + +-..+++.+..+......+....    ......+... +.
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~----~-~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL----A-FPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE----E-SSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----e-cCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            579999999999999999999987   4433221    0 10123344444444433322110    0111000000 00


Q ss_pred             H-----cCCccCccEEEEcCCcCCHH--H---------------HHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH
Q 024390          151 E-----DGYYRGEIGFILDGLPRSRI--Q---------------AEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK  204 (268)
Q Consensus       151 ~-----~~~~~~~~g~IlDGfPr~~~--q---------------a~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~  204 (268)
                      .     ......+..+|.|.++.+..  +               ...++..    ..||++|+|+++++++.+|+..+..
T Consensus        76 ~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~  155 (208)
T d1gsia_          76 GAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ  155 (208)
T ss_dssp             TTHHHHHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhc
Confidence            0     00012356678886654321  1               1112221    4799999999999999999954322


Q ss_pred             H-------H---HHHHHHHchHH-HHHHHhC--CcEEEEeCCCCHHHHHHHH
Q 024390          205 E-------K---LEAYAELSKPL-EDYYQKQ--KKLLEFQVGSAPVETWQGL  243 (268)
Q Consensus       205 ~-------r---l~~y~~~~~~l-~~~y~~~--~~l~~Ida~~s~eev~~~I  243 (268)
                      .       +   ...|.+..... .++..+.  ..+++||+++++++|.++|
T Consensus       156 ~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         156 RDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHhh
Confidence            1       1   12343332221 1122222  3588999999999999886

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.6e-11  Score=99.59  Aligned_cols=98  Identities=10%  Similarity=-0.058  Sum_probs=72.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~  155 (268)
                      .++..|+++|+|||||||+|+.|++.+++.+|+.|++....                        .....+...+..   
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~~------------------------~~~~~~~~~l~~---   64 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQ------------------------RCVSSCQAALRQ---   64 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSHH------------------------HHHHHHHHHHHT---
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHHH------------------------HHHHHHHHHHHC---
Confidence            36678999999999999999999999999999997753221                        123344455543   


Q ss_pred             cCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH
Q 024390          156 RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS  202 (268)
Q Consensus       156 ~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~  202 (268)
                        +..+|+|+...+..+...+.++    ...-.+|+|++|.+++.+|...+
T Consensus        65 --g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R  113 (172)
T d1yj5a2          65 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  113 (172)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             --CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHh
Confidence              5679999887777765554332    23345899999999999998433

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.28  E-value=1.5e-12  Score=103.68  Aligned_cols=164  Identities=11%  Similarity=0.057  Sum_probs=80.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhhcCCCChhHHHHHHHHhccCcc--cH--HHHHHHHHHHHHc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVV--SE--DIIFGLLSKRLED  152 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~~~~~~~~g~~i~~~l~~G~~i--p~--~~~~~ll~~~l~~  152 (268)
                      .+.|+|.|+|||||||+|+.|+++++...++++ +.++....... ........+..+...  .+  ..+...+...+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKM-QSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGG-GTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccc-cchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999998765543 33333221100 000000000111111  01  1111122111111


Q ss_pred             CCccCccEEEEcC-CcCCHHHHHHHHhh--cCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhC-CcEE
Q 024390          153 GYYRGEIGFILDG-LPRSRIQAEILDQL--AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQ-KKLL  228 (268)
Q Consensus       153 ~~~~~~~g~IlDG-fPr~~~qa~~l~~~--~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~-~~l~  228 (268)
                      . ......+++++ +.........+...  .....+|+|+||++++.+|...+..+....-..+..    .+.+. ..-+
T Consensus        82 ~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~~~~~----~~~~~~~~dl  156 (178)
T d1qhxa_          82 M-ARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAY----VVHEGVEYDV  156 (178)
T ss_dssp             H-HHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTT----GGGTTCCCSE
T ss_pred             H-HhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcchhhhhhhhh----hhhcCCCCCE
Confidence            1 01344555554 32333322333222  344568999999999999983321100000011111    11111 1235


Q ss_pred             EEeCC-CCHHHHHHHHHHHH
Q 024390          229 EFQVG-SAPVETWQGLLTAL  247 (268)
Q Consensus       229 ~Ida~-~s~eev~~~I~~~L  247 (268)
                      +||++ .+++|+.++|.+.|
T Consensus       157 ~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         157 EVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             EEETTSSCHHHHHHHHHTTC
T ss_pred             EEECCCCCHHHHHHHHHHhc
Confidence            78875 68999999998643

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=8.5e-11  Score=97.44  Aligned_cols=160  Identities=10%  Similarity=0.087  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH------------------
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE------------------  139 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~------------------  139 (268)
                      ..+|.|.|++||||||+|+.|. .+|++++|+|++.++...++.+....+.+.+......++                  
T Consensus         2 ~~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~   80 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhh
Confidence            3568899999999999999997 589999999999999887777766666655433222111                  


Q ss_pred             -----HHHHHHHHHHHHcCCc-cCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHH
Q 024390          140 -----DIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEK  206 (268)
Q Consensus       140 -----~~~~~ll~~~l~~~~~-~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~r  206 (268)
                           .++...+.+++..... ....-+|+++ |.-.+ .   .....+|.+|+++||+++.++|+..       .+..|
T Consensus        81 ~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll~e-~---~~~~~~d~ii~v~~~~~~r~~R~~~R~~~s~e~~~~~  155 (205)
T d1jjva_          81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIE-N---KLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRI  155 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTT-T---TCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHH
T ss_pred             hhHhhcccCHHHHHHHHHHHhhccCCeEEEEe-ccccc-c---chhhhhhheeeecchHHHHHHHHHhcCCchHHHHHHH
Confidence                 1111122222211100 1233456664 43211 0   0123578999999999999999832       33333


Q ss_pred             HHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          207 LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       207 l~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      ++   .|... .+ .....- ++|+.+.+.++..++|.+.+..
T Consensus       156 ~~---~Q~~~-~~-k~~~aD-~vI~N~~~l~~~~~~l~~~i~~  192 (205)
T d1jjva_         156 MN---SQVSQ-QE-RLKWAD-DVINNDAELAQNLPHLQQKVLE  192 (205)
T ss_dssp             HH---HSCCH-HH-HHHHCS-EEEECCSCHHHHHHHHHHHHHH
T ss_pred             HH---hCCCH-HH-HHHhCC-EEEECCCChHHHHHHHHHHHHH
Confidence            32   22221 11 111122 3467778888877777666543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=1.5e-11  Score=100.48  Aligned_cols=158  Identities=11%  Similarity=0.017  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhH---------------HHHHHHHhccCcc---c
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLH---------------KQIANAVNRGEVV---S  138 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g---------------~~i~~~l~~G~~i---p  138 (268)
                      .+++|.|.|++||||||+|+.|. .+|+.++++|++.++...+..+..               +.+.+.+......   -
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            57899999999999999999995 589999999988877543221111               1111111100000   0


Q ss_pred             HHH----HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHHHHH
Q 024390          139 EDI----IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLKEKL  207 (268)
Q Consensus       139 ~~~----~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~~rl  207 (268)
                      ...    ....+......   .....+|+++.+....     .....+|.+|+++||+++..+|+.       +.+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~---~~~~~vi~e~~~~~~~-----~~~~~~d~vI~v~a~~e~r~~Rl~~R~~~~~~~~~~~~  152 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSR---LEAPLVFLEIPLLFEK-----GWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARE  152 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHT---CCCSEEEEECTTTTTT-----TCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhhhh---cccceEEEEeeccccc-----cccccceeEEEEecchhhHHHHHHhcccchHHHHHHHH
Confidence            001    11111122221   1345667776432111     011357899999999999999982       2333333


Q ss_pred             HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          208 EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       208 ~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      +   .+. +....-. ... +.|+.+.+++++.++|..++..
T Consensus       153 ~---~q~-~~~~~~~-~aD-~vI~N~~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         153 R---AQM-PEEEKRK-RAT-WVLENTGSLEDLERALKAVLAE  188 (191)
T ss_dssp             T---TSC-CHHHHHH-HCS-EEECCSSHHHHHHHHHHHHHHS
T ss_pred             H---hCC-CHHHHHH-hCC-EEEECCCCHHHHHHHHHHHHHH
Confidence            2   111 1221111 122 3477788999999999998864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.6e-11  Score=101.66  Aligned_cols=70  Identities=11%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             cCCCeEEEEecCHHHHHhhhhHHHHHH----HHHHHHHchHH-HHHHH-----------hCCcEEEEeCCCCHHHHHHHH
Q 024390          180 AEIDLVVNFKCADNFIVTNRGGSLKEK----LEAYAELSKPL-EDYYQ-----------KQKKLLEFQVGSAPVETWQGL  243 (268)
Q Consensus       180 ~~~d~vV~Ld~~~e~l~~Rl~~~~~~r----l~~y~~~~~~l-~~~y~-----------~~~~l~~Ida~~s~eev~~~I  243 (268)
                      ..||++|+|+++++++.+|+..+-+..    -..|.+..... .+|+.           ....+++||++.+++++.++|
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i  230 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL  230 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHH
Confidence            379999999999999999983221000    01122221111 12221           123678999999999999999


Q ss_pred             HHHHHh
Q 024390          244 LTALHL  249 (268)
Q Consensus       244 ~~~L~~  249 (268)
                      .+.|+.
T Consensus       231 ~~~i~~  236 (241)
T d1p5zb_         231 VEKVKE  236 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-11  Score=100.38  Aligned_cols=166  Identities=12%  Similarity=0.011  Sum_probs=77.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCCh-----hHHHHHHHHhccCcccHHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS-----LHKQIANAVNRGEVVSEDIIFGLLSKRL  150 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~-----~g~~i~~~l~~G~~ip~~~~~~ll~~~l  150 (268)
                      .+|+.|+|+|+|||||||+|+.|+++++..+++++.+..+.......     ........        .......+....
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   88 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREEN--------VRRIAEVAKLFA   88 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHH--------HHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHH--------HHHHHHHHHHHH
Confidence            47899999999999999999999999988777765544433221100     00000000        001112222222


Q ss_pred             HcCCccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHHHHHHH-HHHHHchHHHHHHHhC-
Q 024390          151 EDGYYRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKLE-AYAELSKPLEDYYQKQ-  224 (268)
Q Consensus       151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~-~y~~~~~~l~~~y~~~-  224 (268)
                      .     ....++.++..........+..    .......+.+.++.....++.......+.. ...........-|... 
T Consensus        89 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  163 (195)
T d1x6va3          89 D-----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPE  163 (195)
T ss_dssp             H-----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCCS
T ss_pred             h-----cCCccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCCC
Confidence            2     2344555544433332222222    122334555666665555555222111110 0000111111112211 


Q ss_pred             CcEEEEeCC-CCHHHHHHHHHHHHHhhcccc
Q 024390          225 KKLLEFQVG-SAPVETWQGLLTALHLQHINA  254 (268)
Q Consensus       225 ~~l~~Ida~-~s~eev~~~I~~~L~~~~~~~  254 (268)
                      ..-++||++ .+++|+.++|.+.|..+++.+
T Consensus       164 ~~dl~IdT~~~s~ee~~~~Il~~l~~~~~i~  194 (195)
T d1x6va3         164 APELVLKTDSCDVNDCVQQVVELLQERDIVP  194 (195)
T ss_dssp             SCSEEECTTTSCHHHHHHHHHHHHHHTTSSC
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHCcCCC
Confidence            223578875 699999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.3e-10  Score=96.66  Aligned_cols=157  Identities=13%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccH--------------
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSE--------------  139 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~--------------  139 (268)
                      .+|.|.|++||||||+|+.|. .+|++++++|.+.++...++.+....+.+.+...     ..+..              
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            467899999999999999986 6899999999999998876666555555443221     11111              


Q ss_pred             ----HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHh--hcCCCeEEEEecCHHHHHhhhhH-------HHHH
Q 024390          140 ----DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQ--LAEIDLVVNFKCADNFIVTNRGG-------SLKE  205 (268)
Q Consensus       140 ----~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~--~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~  205 (268)
                          .++...+.+.+.... ......+++++ |.-      ++.  ...++.+|+++||+++..+|+..       .++.
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll------~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~~~~~~~~~~  155 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLL------VENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQ  155 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTT------TTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eec------ccccccccCCEEEEEeCCHHHHHHHHHHhhhhhHHHHHH
Confidence                111122222222110 01234455553 321      111  23578899999999999999833       2333


Q ss_pred             HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          206 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                      |+   ..|... .......+  ++|+.+.+++++.++|.+++..
T Consensus       156 ~~---~~Q~~~-~~k~~~aD--~vI~N~~~le~l~~~v~~l~~~  193 (208)
T d1vhta_         156 IL---AAQATR-EARLAVAD--DVIDNNGAPDAIASDVARLHAH  193 (208)
T ss_dssp             HH---HHSCCH-HHHHHHCS--EEEECSSCTTSHHHHHHHHHHH
T ss_pred             HH---HhCCCH-HHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence            33   222221 22122222  4578788999999998886653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.16  E-value=8.9e-11  Score=97.99  Aligned_cols=163  Identities=14%  Similarity=0.073  Sum_probs=92.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----CCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH--HH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----EVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LS  147 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l----~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l--l~  147 (268)
                      .+++.|.|+|.|||||||+|+.|++++    +..  +++. |.+|+.+.......+.-+.          +....+  +.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~----------~~~~r~~~~a   90 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRN----------ENIRRIAEVA   90 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHH----------HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHH----------HHHHHHHHHH
Confidence            578999999999999999999999765    433  3444 6778776432111111110          111111  11


Q ss_pred             HHHHcCCccCccEEEEcCCcCCHHHHHHHHhh----------cCCCeEEEEecCHHHHHhhhhHHHHHHHH-HHHHHchH
Q 024390          148 KRLEDGYYRGEIGFILDGLPRSRIQAEILDQL----------AEIDLVVNFKCADNFIVTNRGGSLKEKLE-AYAELSKP  216 (268)
Q Consensus       148 ~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----------~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~-~y~~~~~~  216 (268)
                      ..+.    ..+..+|++.........+.+.++          ...-+.||++||.+++.+|.....-++.. ...+....
T Consensus        91 ~~~~----~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~~~~~g  166 (208)
T d1m7ga_          91 KLFA----DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTG  166 (208)
T ss_dssp             HHHH----HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBT
T ss_pred             HHHh----ccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCcccceec
Confidence            2222    235567777544443322222221          23346899999999999998543322211 00011111


Q ss_pred             HHHHHHhC-CcEEEEeCC-CCHHHHHHHHHHHHHhhccc
Q 024390          217 LEDYYQKQ-KKLLEFQVG-SAPVETWQGLLTALHLQHIN  253 (268)
Q Consensus       217 l~~~y~~~-~~l~~Ida~-~s~eev~~~I~~~L~~~~~~  253 (268)
                      +..-|+.. +.-++||++ .++++..++|.+.|..+++.
T Consensus       167 vd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~~~~i  205 (208)
T d1m7ga_         167 ISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYL  205 (208)
T ss_dssp             TTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTCS
T ss_pred             ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            11223332 223567765 69999999999999988765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.4e-10  Score=95.16  Aligned_cols=31  Identities=13%  Similarity=0.174  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      |++|+|.|+.||||||+++.|+++++-..+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~   32 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA   32 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCc
Confidence            4689999999999999999999999765543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.3e-10  Score=95.08  Aligned_cols=122  Identities=12%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch----hHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM----SSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~----~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~  153 (268)
                      |..|+++|.|||||||+|+.|++.++..++++    .|.+|...................+...........+.+.+...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999886544333    24566543221100000000000000001112222222222211


Q ss_pred             CccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhh
Q 024390          154 YYRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       154 ~~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      ....+.-+|+|+......+.+.+.+    .....+++...|+++.++++.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  131 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHh
Confidence            0023556888987777666555543    234556788889888887654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.98  E-value=8.2e-11  Score=93.36  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=28.7

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      +.+|+.|+|+|+|||||||+|+.|+++++..++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            368899999999999999999999999964433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=3e-09  Score=86.48  Aligned_cols=32  Identities=13%  Similarity=0.068  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      .+++.|+|.|+.||||||+++.|+++++...+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            57889999999999999999999999975443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4e-09  Score=87.05  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC----------ccchhHHHHhhcCCCChhHHHHHHHHh-----ccCcccHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQDLSPRSSLHKQIANAVN-----RGEVVSEDII  142 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~----------~is~~dlir~~~~~~~~~g~~i~~~l~-----~G~~ip~~~~  142 (268)
                      |.+|.|.|++||||||+|+.|++.++..          +|++|+..+...    . .........     .-.....+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l   76 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT----S-EQKAKALKGQFNFDHPDAFDNELI   76 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC----H-HHHHHHHTTCSCTTSGGGBCHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccc----h-hhhhhhhhcccccCCcHHHHHHHH
Confidence            4678899999999999999999998753          355555432210    0 000000000     0011222333


Q ss_pred             HHHHHHHHHcCC-------------------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390          143 FGLLSKRLEDGY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       143 ~~ll~~~l~~~~-------------------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      .+.+........                   ......+|++|.+.-..  ..+..  .+|+.||++++.++.++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~--~~l~~--~~D~~i~v~~~~~~~~~R~  148 (213)
T d1uj2a_          77 LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD--LFQMKLFVDTDADTRLSRR  148 (213)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH--HCSEEEEEECCHHHHHHHH
T ss_pred             HhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhcc--HHHHh--hhheeeeecCCHHHHHHHH
Confidence            444433332110                   01244578888763211  11222  4689999999999998886

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.86  E-value=9.7e-09  Score=81.14  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      -..++|+|+|+|||||||+|+.||+++|.++++..
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            35678999999999999999999999999888654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=9.1e-09  Score=82.98  Aligned_cols=155  Identities=10%  Similarity=0.039  Sum_probs=82.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh---cCCCCh----hHHHHHHHHhccCcccH----------H
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD---LSPRSS----LHKQIANAVNRGEVVSE----------D  140 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~---~~~~~~----~g~~i~~~l~~G~~ip~----------~  140 (268)
                      |..|+|+||+||||||+++.|.+++.-.+.+....-|..   ...+..    ..+...+....|..+..          .
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            578999999999999999999998743333322111111   001110    12333344444432211          0


Q ss_pred             HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHH
Q 024390          141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAE  212 (268)
Q Consensus       141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~  212 (268)
                      ....-+...+..     +..++++..+.   -+..+... ..+..++++..+.|++.+|+       ++.+++|++.++.
T Consensus        82 ~~~~~~~~~~~~-----g~~~i~~~~~~---g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~~~  153 (182)
T d1znwa1          82 TLAQPVRAAAAT-----GVPVLIEVDLA---GARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI  153 (182)
T ss_dssp             EEHHHHHHHHHH-----TCCEEEECCHH---HHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhc-----CCccccccccc---hhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHHHH
Confidence            011112222222     34566665432   23333333 34444555567789999998       4567888877654


Q ss_pred             HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390          213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL  247 (268)
Q Consensus       213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L  247 (268)
                      ..    .++...+.+ .+  +.+.++.+++|.++|
T Consensus       154 e~----~~~~~fD~v-I~--Nddle~a~~~l~~iI  181 (182)
T d1znwa1         154 EL----AAQGDFDKV-VV--NRRLESACAELVSLL  181 (182)
T ss_dssp             HH----HGGGGSSEE-EE--CSSHHHHHHHHHHHH
T ss_pred             HH----hhHhcCCEE-EE--CcCHHHHHHHHHHHh
Confidence            32    222222323 23  457999999998876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.7e-08  Score=80.61  Aligned_cols=156  Identities=8%  Similarity=-0.030  Sum_probs=85.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCc----cchhHHHHhhcCCCC----hhHHHHHHHHhccCcccHH--------HHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPR----ISMSSIVRQDLSPRS----SLHKQIANAVNRGEVVSED--------IIFG  144 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~----is~~dlir~~~~~~~----~~g~~i~~~l~~G~~ip~~--------~~~~  144 (268)
                      |+|+||+||||+|+++.|++.+.-.+    .-+..-.|.-...+.    -..+.....+.+|+.+...        ....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            89999999999999999999874211    011000010000010    1133455555555543210        0112


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh--cCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHHch
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL--AEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELSK  215 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~--~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~~~  215 (268)
                      .+...+.+     +..+|+|+.|...   ..+...  ..+..++++..+.+++.+|+       ++.+++|+..+.....
T Consensus        84 ~i~~~~~~-----g~~~i~~~~~~~~---~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~  155 (186)
T d1gkya_          84 SVKQVSKS-----GKTCILDIDMQGV---KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA  155 (186)
T ss_dssp             HHHHHHHH-----TSEEEEECCHHHH---HHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcC-----CCeEEecchHHHH---HHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence            22233332     4567888765333   333332  24556778888999999999       3467778776554322


Q ss_pred             HHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390          216 PLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL  249 (268)
Q Consensus       216 ~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~  249 (268)
                         ..+...--.+.+  +.+.++..++|.++|..
T Consensus       156 ---~~~~~~fd~vI~--N~dle~a~~~l~~iI~~  184 (186)
T d1gkya_         156 ---YAETGAHDKVIV--NDDLDKAYKELKDFIFA  184 (186)
T ss_dssp             ---HHTTTCSSEEEE--CSSHHHHHHHHHHHHHT
T ss_pred             ---hhhhcCCCEEEE--CcCHHHHHHHHHHHHHh
Confidence               111111013333  45799999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=1.5e-07  Score=76.51  Aligned_cols=156  Identities=12%  Similarity=0.007  Sum_probs=82.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHh---hcCCCC----hhHHHHHHHHhccCcccHH--------HHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQ---DLSPRS----SLHKQIANAVNRGEVVSED--------IIFG  144 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~~~~-is~~dlir~---~~~~~~----~~g~~i~~~l~~G~~ip~~--------~~~~  144 (268)
                      |+|+||+||||+|+++.|++.++-.+ ......-|.   ....+.    -......+....|..+...        +...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            88999999999999999999876332 111000011   000010    1124455555555543210        0111


Q ss_pred             HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHHchH
Q 024390          145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELSKP  216 (268)
Q Consensus       145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~~~~  216 (268)
                      -+...+.     .+..++++..+   .-+..+... ..+..|+++..+.+++.+|+       ++.+++|+..+..... 
T Consensus        83 ~v~~~~~-----~g~~~~~~~~~---~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~-  153 (190)
T d1lvga_          83 AVRAVQA-----MNRICVLDVDL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME-  153 (190)
T ss_dssp             HHHHHHH-----TTCEEEEECCH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-
T ss_pred             hhhhhhc-----CCCceeecchH---hhhhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHH-
Confidence            2222233     24456666542   222333332 34445555566678999998       3567788876655432 


Q ss_pred             HHHHHHhCC--cEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390          217 LEDYYQKQK--KLLEFQVGSAPVETWQGLLTALHLQ  250 (268)
Q Consensus       217 l~~~y~~~~--~l~~Ida~~s~eev~~~I~~~L~~~  250 (268)
                         +....+  -.+.+|  .+.++.+++|.++|...
T Consensus       154 ---~~~~~~~fd~iI~N--~dle~a~~~l~~iI~~~  184 (190)
T d1lvga_         154 ---SSKEPGLFDLVIIN--DDLDKAYATLKQALSEE  184 (190)
T ss_dssp             ---GGGSTTTCSEEEEC--SSHHHHHHHHHHHTHHH
T ss_pred             ---hhhhcCCCCEEEEC--cCHHHHHHHHHHHHHHH
Confidence               111111  133343  47899999999887754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.50  E-value=1.4e-07  Score=79.34  Aligned_cols=115  Identities=9%  Similarity=0.001  Sum_probs=61.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC--CccchhHHHHhhcCCCChhHHHHHHHHhc----cCcccHHHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNR----GEVVSEDIIFGLLSKR  149 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~--~~is~~dlir~~~~~~~~~g~~i~~~l~~----G~~ip~~~~~~ll~~~  149 (268)
                      ..+..|+|.|||||||||+|+.||+.++.  ..++++++. +.....   ..........    -...........+...
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK-QQHPNF---DELVKLYEKDVVKHVTPYSNRMTEAIISRL  105 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH-TTSTTH---HHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH-HHhccC---cccchhhhHHHHHHHHhhccchHHHHHHHH
Confidence            34566999999999999999999999854  566665543 322211   1111111000    0000111222222233


Q ss_pred             HHcCCccCccEEEEcCCcCCHHHHH-HHHhh---cCCCeEEEEecCHHHHHhhh
Q 024390          150 LEDGYYRGEIGFILDGLPRSRIQAE-ILDQL---AEIDLVVNFKCADNFIVTNR  199 (268)
Q Consensus       150 l~~~~~~~~~g~IlDGfPr~~~qa~-~l~~~---~~~d~vV~Ld~~~e~l~~Rl  199 (268)
                      +.     ...+.++|+..+...+.. .+...   .....+.+++++.+....|.
T Consensus       106 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  154 (273)
T d1gvnb_         106 SD-----QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT  154 (273)
T ss_dssp             HH-----HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHH
T ss_pred             Hh-----hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHH
Confidence            32     234567776655544332 22322   22234677888888888776

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=7.4e-07  Score=73.43  Aligned_cols=159  Identities=11%  Similarity=0.066  Sum_probs=88.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC--c--cc-hhHHHHhhcCCCC----hhHHHHHHHHhccCcccHH--------
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--R--IS-MSSIVRQDLSPRS----SLHKQIANAVNRGEVVSED--------  140 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~--~--is-~~dlir~~~~~~~----~~g~~i~~~l~~G~~ip~~--------  140 (268)
                      |+.|+|+||+||||+|+.+.|.+.+...  .  ++ +..-.|.....+.    -.-+...+.+.+|+.+...        
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            6789999999999999999999986421  1  11 1111111111111    1234556666666543211        


Q ss_pred             HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHH
Q 024390          141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAE  212 (268)
Q Consensus       141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~  212 (268)
                      +-..-+...+.     .+..+|+|.-+..   +..+.+. ..+-.++++-.+.+++.+|+       ++.++.|+.....
T Consensus        82 t~~~~v~~~~~-----~g~~~ildid~~g---~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~  153 (205)
T d1s96a_          82 TSREAIEQVLA-----TGVDVFLDIDWQG---AQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVA  153 (205)
T ss_dssp             EEHHHHHHHHT-----TTCEEEEECCHHH---HHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHh-----cCCceeecCcHHH---HHHHHhhhcccceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            00122223333     3667888865432   3334333 23334555666777888888       3456777765544


Q ss_pred             HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390          213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH  251 (268)
Q Consensus       213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~  251 (268)
                      ...    ++...+ .+.+  +.+.++.+++|.++|....
T Consensus       154 E~~----~~~~fD-~vIv--Nddl~~a~~el~~iI~~e~  185 (205)
T d1s96a_         154 EMS----HYAEYD-YLIV--NDDFDTALTDLKTIIRAER  185 (205)
T ss_dssp             HHT----TGGGSS-EEEE--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHhCCC-EEEE--CcCHHHHHHHHHHHHHHHH
Confidence            322    122222 2334  3579999999999997543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.47  E-value=2.8e-08  Score=79.73  Aligned_cols=30  Identities=23%  Similarity=0.199  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      ..+.+|.|.|++||||||+|+.|++.++..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            456778899999999999999999987643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.40  E-value=3.5e-06  Score=74.29  Aligned_cols=28  Identities=14%  Similarity=0.044  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|+|.|+.||||||+++.|++.++..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            4679999999999999999999998653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.17  E-value=1.7e-05  Score=69.88  Aligned_cols=28  Identities=11%  Similarity=-0.054  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +.++|+|.|+.||||||+++.|++.++.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhcc
Confidence            5578999999999999999999998853

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.15  E-value=3.1e-05  Score=67.99  Aligned_cols=28  Identities=14%  Similarity=0.000  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      ..++|+|.|+.||||||+++.|++.++.
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999988753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.10  E-value=8.1e-07  Score=73.98  Aligned_cols=39  Identities=13%  Similarity=0.189  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~  117 (268)
                      .+|.|.|++||||||+|+.|++++|+.+++++|.++..+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            578999999999999999999999999999777666653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=3.2e-06  Score=73.79  Aligned_cols=39  Identities=26%  Similarity=0.255  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR  114 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dlir  114 (268)
                      +.+.+|.|.|++||||||+|+.|++.++       +..|++|+.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            5678899999999999999999999874       34588888763

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.78  E-value=5.4e-06  Score=65.00  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      |+|+|+|||||||||+++.|+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            67999999999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=6e-06  Score=68.28  Aligned_cols=30  Identities=20%  Similarity=0.228  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is  108 (268)
                      +.++|.||||+||||+|+.|++.++...+.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            358999999999999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.76  E-value=2e-05  Score=67.96  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR  114 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir  114 (268)
                      .+.++|.|.|++||||||+++.|++.+   ++  ..|+.|+..+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            355689999999999999999998876   33  4788888753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.7e-05  Score=59.39  Aligned_cols=24  Identities=8%  Similarity=0.080  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.|+|+||+||||+|+++.|.+.+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999999876

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.69  E-value=1.1e-05  Score=73.67  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .+.+|+++||+|||||-+|+.||+.+++|++..
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            345799999999999999999999999998665

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.1e-05  Score=62.37  Aligned_cols=24  Identities=21%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.|.|.|++||||||+++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            579999999999999999999875

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.68  E-value=1e-05  Score=66.96  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      +.++|.||||+||||+|+.+++.+++....+
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            4589999999999999999999998875443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.64  E-value=1.4e-05  Score=67.35  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .-|+|.||||+|||++|+.||+..|++++.+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            3499999999999999999999999987755

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=0.0024  Score=46.54  Aligned_cols=134  Identities=19%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~  159 (268)
                      .|++.||.++=|||+|..|++.+.++.|.-...-         +.       ..|.    +-.+    +..++.  ....
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfe---------la-------ksgn----eklf----ehfnkl--aded   55 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE---------LA-------KSGN----EKLF----EHFNKL--ADED   55 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHH---------HH-------HHCH----HHHH----HHHHHH--TTCC
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhh---------hh-------hccC----HHHH----HHHHhh--cccc
Confidence            5899999999999999999999999987543211         11       1111    1111    111111  2456


Q ss_pred             EEEEcCCcC---------------CHHHHHHHHhhc-CCCeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHc
Q 024390          160 GFILDGLPR---------------SRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELS  214 (268)
Q Consensus       160 g~IlDGfPr---------------~~~qa~~l~~~~-~~d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~  214 (268)
                      .+|+|.|..               +..|...++... .-..||+|.+++.++.+|+.-         .+..-++.|++. 
T Consensus        56 nviidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkdidsilelyrev-  134 (164)
T d2axpa1          56 NVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREV-  134 (164)
T ss_dssp             SEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHHHHHHH-
T ss_pred             ceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCCHHHHHHHHHHH-
Confidence            777776532               345777776543 334699999999999999822         334444444432 


Q ss_pred             hHHHHHHHhCC-cEEEEeC-CCCHHHHHHHHHHH
Q 024390          215 KPLEDYYQKQK-KLLEFQV-GSAPVETWQGLLTA  246 (268)
Q Consensus       215 ~~l~~~y~~~~-~l~~Ida-~~s~eev~~~I~~~  246 (268)
                            .+..+ ....-|. ..+-+|+...|.-.
T Consensus       135 ------msnaglhtyswdtgqwssdeiakdiifl  162 (164)
T d2axpa1         135 ------MSNAGLHTYSWDTGQWSSDEIAKDIIFL  162 (164)
T ss_dssp             ------HHTCSSCEEEEETTTSCHHHHHHHHHHH
T ss_pred             ------HhcCCceeeecccCCcchHHhhhheeEe
Confidence                  22333 2445564 47899998887643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.61  E-value=1.4e-05  Score=66.30  Aligned_cols=62  Identities=19%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             cccCCcCCCcccccccccCCcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           34 AAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ++..++|-|+.. -  ..|.+.+++.+-+.+...-.  +   ..+..++|.||||+|||++++.|++.+.
T Consensus         7 ~~l~~~y~p~~l-~--~Re~ei~~l~~~l~~~l~~~--~---~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2           7 SVFSPSYVPKRL-P--HREQQLQQLDILLGNWLRNP--G---HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             GGGSTTCCCSCC-T--TCHHHHHHHHHHHHHHHHST--T---SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             ccCCCCCCCCCC-C--CHHHHHHHHHHHHHHHHhCC--C---CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            466777776532 0  11233444444332211111  1   2345699999999999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.8e-05  Score=67.09  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR  114 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir  114 (268)
                      .-+++.||||+|||++++.||+.+|.+.+  +.++++.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~   83 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE   83 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            45899999999999999999999998774  4455553

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=2e-05  Score=66.36  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQ  115 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~  115 (268)
                      .-|++.||||+|||++++.||+.+|++++  +..+++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~   81 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   81 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            35899999999999999999999998874  45566654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.7e-05  Score=61.62  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.|+|.|+||+||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            359999999999999999999887

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=2.3e-05  Score=65.00  Aligned_cols=30  Identities=17%  Similarity=0.118  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ...++|.||||+||||.++.||+.++..++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            356999999999999999999999987543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=2.2e-05  Score=68.09  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIV  113 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dli  113 (268)
                      ..|+|.||||+|||.+|+.||+.++.+  .++++++.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            347899999999999999999999866  45555654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=2.4e-05  Score=67.39  Aligned_cols=38  Identities=13%  Similarity=0.130  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh--------CCCccchhHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--------EVPRISMSSIV  113 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l--------~~~~is~~dli  113 (268)
                      .++.+|.|.|++||||||+|..|.+.+        .+..||+||+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            356788999999999999998886553        34567999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.38  E-value=4.8e-05  Score=67.59  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      ++..++|.||||+|||++|+.||+.+|..++++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            445799999999999999999999999888765

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=4e-05  Score=62.89  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +.++|.||||+||||+++.|++.++.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            45899999999999999999998754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=6.3e-05  Score=63.72  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR  114 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir  114 (268)
                      +.-|++.||||+|||++++.||..+|.+.+.+  .++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~   79 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT   79 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhh
Confidence            34599999999999999999999999875444  45543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=8.1e-05  Score=62.70  Aligned_cols=30  Identities=13%  Similarity=0.107  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      -|++.||||+|||++++.+|...+.+.+.+
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             eeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            489999999999999999999999876554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.18  E-value=0.00011  Score=57.09  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.|.|+|.+||||||+...|..++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356799999999999999998876

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00019  Score=58.96  Aligned_cols=28  Identities=14%  Similarity=0.138  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |.++..|+++||+|+||||.+.+||.++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566789999999999999999999876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.0001  Score=60.20  Aligned_cols=26  Identities=23%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|.||||+||||+|+.|++.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            48999999999999999999987654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.04  E-value=0.00016  Score=59.21  Aligned_cols=30  Identities=10%  Similarity=0.000  Sum_probs=26.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+.| ++-.++|.|+||||||++|..++...
T Consensus        21 GGi~-~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          21 GGFF-KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSEE-SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCc-CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5556 67889999999999999999998874

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.02  E-value=0.0002  Score=58.38  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +.|+|.|++||||||+.++|.+.++
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Confidence            5799999999999999999987653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00018  Score=58.58  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++|.||||+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            48999999999999999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00018  Score=62.35  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI  112 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dl  112 (268)
                      .++|+||||+|||.+|+.||+.++.++  ++++++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            588999999999999999999998754  455544

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.95  E-value=0.00024  Score=58.73  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++|.||||+|||++++.+++.++
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456779999999999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00018  Score=59.14  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.++|.||||+||||+++.+++.+
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            358999999999999999999986

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00025  Score=57.68  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .++|.||||+||||+++.|++.++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhc
Confidence            4889999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.84  E-value=0.00033  Score=52.93  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|+||+||||+..+|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00034  Score=54.91  Aligned_cols=30  Identities=20%  Similarity=0.162  Sum_probs=25.7

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+.| ++..+.|.|+||||||++|..++-..
T Consensus        18 GGi~-~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          18 GGIE-TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEE-TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCc-CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4555 78899999999999999999998754

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.78  E-value=0.00046  Score=56.31  Aligned_cols=26  Identities=15%  Similarity=0.172  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++..|+++||+||||||.+.+||.++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.73  E-value=0.00063  Score=55.64  Aligned_cols=27  Identities=15%  Similarity=0.098  Sum_probs=19.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.+.+|+|+||+|+||||.+.+||.++
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356678899999999999999999876

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.73  E-value=0.00051  Score=53.29  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=23.9

Q ss_pred             CccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           73 RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        73 ~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +.|.+..+|+|+|.||+||||+..+|..
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3456788999999999999999998854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.59  E-value=0.00085  Score=54.66  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..|+|+||+|+||||.+.+||.++
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568889999999999999999876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0008  Score=55.02  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..|+++||+|+||||.+.+||.++
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999776

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0011  Score=51.78  Aligned_cols=50  Identities=10%  Similarity=0.012  Sum_probs=35.6

Q ss_pred             cCCcchHhhhcccccc-CCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           51 AESDSDQHRDSLRSVT-LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        51 ~~~~~~~l~~~~~~~~-~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      +|++-.++++.+.+.. ....     ..+..|++.|.-||||||+++.+++.+|..
T Consensus        10 ~e~~t~~lg~~la~~l~~~~~-----~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          10 DEFSMLRFGKKFAEILLKLHT-----EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCC-----SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHhccC-----CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            3445556666554322 2222     356789999999999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.49  E-value=0.0006  Score=59.28  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=26.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC--CCc--cchhHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE--VPR--ISMSSIVRQ  115 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~--~~~--is~~dlir~  115 (268)
                      +++.||||+|||.+|+.||...|  +++  ++.++++..
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~  164 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG  164 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTT
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhc
Confidence            55689999999999999999975  443  445555543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00056  Score=55.20  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=24.6

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |+.| ++..+.|.|+|||||||+|-.++..
T Consensus        29 GGi~-~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          29 GGVE-TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEE-SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCc-CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4556 7888999999999999999988653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.46  E-value=0.00072  Score=52.11  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++..+|+|+|.||+||||+..+|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4667899999999999999998854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.45  E-value=0.00084  Score=51.45  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |.++|+|+|+||+||||+..+|...
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCC
Confidence            3578999999999999999998653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.45  E-value=0.0009  Score=54.50  Aligned_cols=30  Identities=17%  Similarity=0.127  Sum_probs=25.8

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+-| ++..++|.|+|||||||+|-.++...
T Consensus        31 GGlp-~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          31 GGIE-TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEE-SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcc-CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5566 78899999999999999999988654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.00098  Score=54.53  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=24.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~  106 (268)
                      ..++|.|++|+|||++++.+++..+..+
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            4688999999999999999999887654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=53.65  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=25.3

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |+.| ++..++|.|+||||||++|..++..
T Consensus        32 GGip-~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          32 GGIE-SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSBC-SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCc-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4566 8889999999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0011  Score=51.48  Aligned_cols=28  Identities=7%  Similarity=0.025  Sum_probs=23.9

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .|.+..+|+|+|.+|+||||+..++...
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhC
Confidence            3566789999999999999999998753

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.012  Score=47.07  Aligned_cols=156  Identities=8%  Similarity=0.027  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC----ccchhHHHHhhcCCCCh-----hHHHHHHHHhccCcccHH--------HH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP----RISMSSIVRQDLSPRSS-----LHKQIANAVNRGEVVSED--------II  142 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~----~is~~dlir~~~~~~~~-----~g~~i~~~l~~G~~ip~~--------~~  142 (268)
                      -|+|.||   ||+|+.++|.+.+.-.    ..-+..-.|.....+..     -.+.....+.+|+.+...        +.
T Consensus        11 pivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~YGt~   87 (199)
T d1kjwa2          11 PIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS   87 (199)
T ss_dssp             CEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCcccee
Confidence            3777786   6999999999976421    11111111111111110     123345555555432110        00


Q ss_pred             HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHHchHH
Q 024390          143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAELSKPL  217 (268)
Q Consensus       143 ~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~~~~l  217 (268)
                      ..-+...+.     .+..+|+|.-|....+   +......-.+||+..|.-..++|+     ++.+++|++...+.....
T Consensus        88 ~~~i~~~~~-----~gk~~lldid~~g~~~---lk~~~~~~i~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~~~e~~~  159 (199)
T d1kjwa2          88 VQSVREVAE-----QGKHCILDVSANAVRR---LQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEF  159 (199)
T ss_dssp             HHHHHHHHH-----TTCEEEECCCTTHHHH---HHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEehhc-----CCCcccccccchHHhh---hhhhccceeEEeeccccHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence            122333333     3567888876544333   333222235788877644433443     345666665543322222


Q ss_pred             HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhcc
Q 024390          218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHI  252 (268)
Q Consensus       218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~  252 (268)
                      ..+|   + . .|. +.+.++.+++|.++|.....
T Consensus       160 ~~~f---d-~-vI~-Nddle~a~~~l~~iI~~~~~  188 (199)
T d1kjwa2         160 TECF---S-A-IVE-GDSFEEIYHKVKRVIEDLSG  188 (199)
T ss_dssp             GGGC---S-E-EEC-CSSHHHHHHHHHHHHHHHSC
T ss_pred             hccC---C-E-EEE-CcCHHHHHHHHHHHHHHhcC
Confidence            2222   2 2 332 46799999999999986543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.34  E-value=0.0011  Score=50.98  Aligned_cols=24  Identities=17%  Similarity=0.079  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +.++|+|+|.|||||||+..+|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            557899999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.30  E-value=0.0014  Score=49.48  Aligned_cols=25  Identities=20%  Similarity=0.078  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +-.+|+|+|.||+||||+.+++...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC
Confidence            4478999999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0012  Score=51.62  Aligned_cols=27  Identities=7%  Similarity=0.094  Sum_probs=23.2

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .| +..+|+|+|.+|+|||++.+++.+.
T Consensus         2 ~p-~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           2 SP-QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CC-EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             Cc-eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            45 5678999999999999999998763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.23  E-value=0.0012  Score=58.26  Aligned_cols=29  Identities=28%  Similarity=0.437  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i  107 (268)
                      ..|+|+||.|+|||-+|+.||+.++.+.+
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             cceeeeCCCCccHHHHHHHHHhhccccee
Confidence            45999999999999999999998876643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0014  Score=49.72  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |.+|+|+|.|++||||+..+|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999999974

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.14  E-value=0.0078  Score=48.14  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..++|.|+||+||+++|..|++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0017  Score=56.50  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+|-|.|+|||||||+...|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            367889999999999999999998765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.12  E-value=0.00091  Score=57.73  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++|+|+||+||||+++.+++-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            49999999999999999999865

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0017  Score=48.65  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +|+|+|+||+||||+..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0022  Score=51.70  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +...++++|+||+|||++++.||.+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHH
Confidence            34468999999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0019  Score=49.44  Aligned_cols=22  Identities=14%  Similarity=0.223  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+++|.||+||||+..++..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0016  Score=53.49  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|.||||+||||+|+.+++.++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            48999999999999999999987543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.0015  Score=56.39  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=23.1

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGV-HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~-~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++. .+++.||+|+|||.+|+.||+.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            4444 57899999999999999999986

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.94  E-value=0.0021  Score=50.60  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++|+|+|.||+||||+...|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            4799999999999999999974

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.002  Score=51.96  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      -++|.||||+||||+|+.+|+.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHhccc
Confidence            4999999999999999999998753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.94  E-value=0.0019  Score=51.57  Aligned_cols=28  Identities=14%  Similarity=0.115  Sum_probs=23.1

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |+.| ++..++|.|+||+|||++|..++-
T Consensus        21 GGi~-~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          21 GGLP-IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SSEE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCc-CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4555 788899999999999999977643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0017  Score=54.03  Aligned_cols=28  Identities=11%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+-++.|+|+.||||||+.+.|...+.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4678899999999999999999987664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.90  E-value=0.0026  Score=55.08  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..+|-|.|+||+||||+...|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            366889999999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0023  Score=52.89  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+||.||||||+.+.|+-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcC
Confidence            46778999999999999999999754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.84  E-value=0.0019  Score=54.08  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+-++.|+|+.||||||+++.|+..+.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            4677899999999999999999987653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.83  E-value=0.0028  Score=48.85  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+..+|...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            57999999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.82  E-value=0.0022  Score=53.28  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            467889999999999999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0028  Score=48.38  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+++|.+|+||||+..++..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            45799999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.81  E-value=0.0028  Score=48.45  Aligned_cols=23  Identities=9%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|++|+||||+..+|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999998653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.80  E-value=0.0026  Score=50.98  Aligned_cols=30  Identities=17%  Similarity=-0.006  Sum_probs=25.4

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+-| ++-.++|.|+||+|||++|..++-..
T Consensus        29 GGl~-~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          29 GGLE-SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SSEE-TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcc-CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3344 78899999999999999999998754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0025  Score=53.23  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .++-++.|+|+.||||||+.+.|...+.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            4678899999999999999999987653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.76  E-value=0.003  Score=51.23  Aligned_cols=35  Identities=14%  Similarity=0.011  Sum_probs=27.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ  115 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~  115 (268)
                      ++|.|++|||||.+++.+++.+     .+.+++..++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            7899999999999999999876     3346666665543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0023  Score=53.19  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+|+.||||||+.+.|+-..
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            467789999999999999999997543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.74  E-value=0.0024  Score=52.70  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|-.+.|+|+.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            467789999999999999999887543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0032  Score=48.67  Aligned_cols=22  Identities=14%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.||+||||+..++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5799999999999999999865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0031  Score=48.61  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.+|+||||+.+++...
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            357999999999999999998863

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.71  E-value=0.0033  Score=49.77  Aligned_cols=33  Identities=18%  Similarity=0.034  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .++-|+|.|++|+||||+|-.|.++ |...|+-|
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            4566999999999999999999875 88776654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0034  Score=48.36  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5799999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.003  Score=48.43  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|.+|+||||+..++..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            456899999999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0023  Score=49.26  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...++|+|+|.|++||||+.++|..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999998854

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.0046  Score=47.94  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..++|+|+|.+|+||||+..+|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4688999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.67  E-value=0.0023  Score=49.44  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++.++|+|+|.||+||||+..++..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4568899999999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=49.12  Aligned_cols=23  Identities=9%  Similarity=0.115  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+.++|..
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc
Confidence            36799999999999999999874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0034  Score=48.05  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+++|.+|+||||+..++...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999998763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0037  Score=47.87  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +..+|+|+|.+|+||||+..++...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            3468999999999999999998763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0033  Score=49.58  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +.|+|+|.||+||||+..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0037  Score=48.38  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+..++..
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999998865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0036  Score=48.30  Aligned_cols=23  Identities=13%  Similarity=0.171  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+..++..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.004  Score=52.51  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +...++++|+||+|||++++.||.+.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            33468999999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.59  E-value=0.0034  Score=52.11  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356789999999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.56  E-value=0.0037  Score=51.86  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-.+.|+||.||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            467789999999999999999998654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0035  Score=53.17  Aligned_cols=27  Identities=22%  Similarity=0.234  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-++.|+|+.||||||+.+.|+-.+
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            477889999999999999999998655

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.51  E-value=0.0029  Score=49.23  Aligned_cols=25  Identities=16%  Similarity=0.111  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+|+|+|.+|+||||+.++|..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4678899999999999999998743

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0044  Score=47.42  Aligned_cols=22  Identities=14%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.+|+||||+.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999998875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.0039  Score=47.89  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      .|+|+|.||+||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999974

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.0039  Score=47.77  Aligned_cols=24  Identities=13%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|.+|+||||+.++|..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            456899999999999999999875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.47  E-value=0.0037  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+.|+||.||||||+.+.|+-.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57799999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.0041  Score=49.35  Aligned_cols=22  Identities=18%  Similarity=0.048  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .|+|+|+|||||||+..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0048  Score=47.42  Aligned_cols=24  Identities=8%  Similarity=0.093  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|.+|+||||+.+++..
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.44  E-value=0.003  Score=50.87  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|-++.|+||.||||||+.+.|+..+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            467789999999999999999997644

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.43  E-value=0.004  Score=49.29  Aligned_cols=33  Identities=18%  Similarity=-0.004  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~  110 (268)
                      .+.-|+|.|++|+||||+|-.|.++ |...|+-|
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            4566999999999999999999865 77766554

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.41  E-value=0.0048  Score=48.05  Aligned_cols=22  Identities=9%  Similarity=0.141  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+++|.+|+||||+..++..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0048  Score=47.23  Aligned_cols=23  Identities=9%  Similarity=0.063  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+..++..
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.005  Score=47.11  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |..+|+|+|.+|+|||++.+++...
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4467999999999999999998753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.34  E-value=0.0031  Score=52.03  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            466789999999999999999998654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.33  E-value=0.0052  Score=48.22  Aligned_cols=34  Identities=21%  Similarity=0.048  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d  111 (268)
                      .++-|+|.|++|+||||++-.|.++ |...|+-|-
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~   47 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDN   47 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCe
Confidence            5667999999999999999888877 776665543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0053  Score=47.14  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+++|.+|+|||++.+++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999998863

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.32  E-value=0.0023  Score=53.60  Aligned_cols=28  Identities=18%  Similarity=0.452  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      ..+-++.|+|+.||||||+.+.|...+.
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            4677899999999999999999986554

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0051  Score=47.40  Aligned_cols=22  Identities=9%  Similarity=0.081  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.+|+||||+..++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.29  E-value=0.0042  Score=52.06  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+-++.|+|+.||||||+++.|+-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            46778999999999999999999753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0053  Score=47.94  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEML   98 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~L   98 (268)
                      |..+|+|+|.+||||||+..++
T Consensus         1 r~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHH
Confidence            4568999999999999999998

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0053  Score=47.11  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+..+|...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.22  E-value=0.0027  Score=52.77  Aligned_cols=27  Identities=19%  Similarity=0.428  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-++.|+||.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            467789999999999999999998643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.002  Score=48.80  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|.|++||||+..+|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0056  Score=46.58  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      +|+|+|.+|+||||+.+++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0059  Score=47.16  Aligned_cols=23  Identities=17%  Similarity=0.085  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0058  Score=48.13  Aligned_cols=24  Identities=17%  Similarity=0.093  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...+|+|+|.+|+||||+..++..
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhh
Confidence            346799999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0052  Score=47.10  Aligned_cols=22  Identities=18%  Similarity=0.098  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0065  Score=46.54  Aligned_cols=24  Identities=8%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            368999999999999999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0059  Score=46.66  Aligned_cols=23  Identities=13%  Similarity=0.102  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+..+|...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999998763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0067  Score=46.50  Aligned_cols=24  Identities=8%  Similarity=0.102  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...+|+|+|.+|+|||++.+++..
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHh
Confidence            346799999999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.007  Score=46.80  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+|+|+|.+|+||||+.++|..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.06  E-value=0.0053  Score=47.35  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      .|+|+|.||+||||+...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999974

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0062  Score=46.75  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|.+|+||||+.+++...
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC
Confidence            36999999999999999988653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.95  E-value=0.0088  Score=50.14  Aligned_cols=24  Identities=17%  Similarity=0.070  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...|.|.|+.|.||||+|+.+.++
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999998765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.95  E-value=0.0075  Score=46.29  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+|+|.+|+||||+.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999999865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.89  E-value=0.0075  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..|+|+|.+|+||||+.++|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.88  E-value=0.0053  Score=53.04  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      +..|+|.|++||||||+.+.|.....
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            45699999999999999999988763

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.88  E-value=0.007  Score=48.83  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~  109 (268)
                      .|++ ..++|.|||++|||++|..|.+-++-..++.
T Consensus        50 ~PKk-n~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          50 TPKK-NCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             CTTC-SEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             CCCc-eEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            4533 6799999999999999999999886544443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0077  Score=46.43  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      -.+|+|+|.+|+||||+.+++..
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0085  Score=46.59  Aligned_cols=23  Identities=13%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++|+|+|.+|+|||++.+++.+.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999988763

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.80  E-value=0.0068  Score=50.13  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-++.|+||.||||||+.+.|+-.+
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467789999999999999999997654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.78  E-value=0.014  Score=43.01  Aligned_cols=32  Identities=3%  Similarity=-0.245  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .|......+|.+|.|||||+++-.+....|..
T Consensus         4 ~~~~~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           4 VPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CCSSCEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CccCCCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            34555678999999999999987766666543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.0047  Score=47.64  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=11.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHh
Confidence            346799999999999999988764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0082  Score=46.82  Aligned_cols=25  Identities=8%  Similarity=-0.009  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ...+|+|+|.+|+||||+..++...
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhC
Confidence            3457999999999999999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0093  Score=46.68  Aligned_cols=24  Identities=8%  Similarity=0.072  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+++|.+|+|||++..++.+.
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999888753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.013  Score=43.28  Aligned_cols=27  Identities=11%  Similarity=0.111  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.+..|++.|-.||||+|+|+.|...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999997766

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.58  E-value=0.0078  Score=50.17  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .++-++.|+||.||||||+.+.|+-.+
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            467789999999999999999997654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.01  Score=45.48  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      .|+|+|.|++||||+..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.45  E-value=0.013  Score=48.36  Aligned_cols=26  Identities=12%  Similarity=0.069  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .++-.++|.|+||+|||+++..++-.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            46778999999999999999888754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.0079  Score=49.39  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..|-.+.|+|+.||||||+.+.|+-
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            5788899999999999999999976

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.35  E-value=0.011  Score=49.05  Aligned_cols=25  Identities=8%  Similarity=0.025  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..++|+|+|.||+||||++..|..+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            5678999999999999999998653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.27  E-value=0.01  Score=49.24  Aligned_cols=15  Identities=7%  Similarity=0.000  Sum_probs=12.8

Q ss_pred             EEEEcCCCCChhHHH
Q 024390           81 WAFIGSPRAKKHVYA   95 (268)
Q Consensus        81 IvI~G~pGSGKST~a   95 (268)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.0077  Score=46.32  Aligned_cols=22  Identities=9%  Similarity=0.197  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+++|.+|+||||+..++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999988754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.012  Score=47.73  Aligned_cols=24  Identities=13%  Similarity=-0.074  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.++|.|..||||||+.+.|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            578999999999999999987753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.15  E-value=0.0092  Score=46.22  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      .|.|+|+|++||||+..+|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.016  Score=48.50  Aligned_cols=30  Identities=13%  Similarity=0.041  Sum_probs=25.3

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+.| .+....|.|+|||||||+|-.++...
T Consensus        49 GGi~-~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          49 GGLP-MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SSEE-TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcc-CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            4555 77889999999999999999887654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.06  E-value=0.013  Score=48.31  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+-++.|+||.||||||+.+.|+-.+
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            466789999999999999999998654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.06  E-value=0.011  Score=52.20  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +..+++++|+||+|||+++..||.+.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            33457899999999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.01  E-value=0.017  Score=44.29  Aligned_cols=22  Identities=9%  Similarity=0.098  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|+++|.+|+||||+..++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999876

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.017  Score=50.39  Aligned_cols=22  Identities=18%  Similarity=0.086  Sum_probs=18.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLS   99 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La   99 (268)
                      ....+|.|+||+||||+...+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            5679999999999998875543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.019  Score=44.48  Aligned_cols=23  Identities=13%  Similarity=0.186  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+++|.+|+||||+..++...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            68999999999999999987653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.85  E-value=0.016  Score=48.68  Aligned_cols=15  Identities=7%  Similarity=0.011  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChhHHH
Q 024390           81 WAFIGSPRAKKHVYA   95 (268)
Q Consensus        81 IvI~G~pGSGKST~a   95 (268)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            778899999999765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.82  E-value=0.011  Score=45.70  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      .|.|+|.|++||||+..+|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.019  Score=44.27  Aligned_cols=25  Identities=8%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      -.+|+|+|..|+|||++..++....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3689999999999999999997653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.66  E-value=0.017  Score=44.77  Aligned_cols=24  Identities=13%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +..+|.|+|.|.+||||+..+|.+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            456799999999999999999974

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.59  E-value=0.024  Score=45.84  Aligned_cols=25  Identities=12%  Similarity=0.101  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      |.++|.|+|.|.+||||+...|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            5567999999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.47  E-value=0.021  Score=45.89  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ..+|+|+|..|+||||+.+++...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999998643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.42  E-value=0.022  Score=46.55  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++...+|+|++|+||||+...|....
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            45678999999999999999886443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.25  E-value=0.035  Score=46.39  Aligned_cols=28  Identities=14%  Similarity=0.160  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +...++|.|||++|||+++..|.+.+|.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4456899999999999999999998864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.024  Score=46.45  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      +...+|.|+||+||||++-.||..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            457889999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.033  Score=45.95  Aligned_cols=27  Identities=15%  Similarity=-0.036  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+..|++.|.-|+||||++..||..+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            356688999999999999988888776

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.06  E-value=0.031  Score=42.86  Aligned_cols=24  Identities=13%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      -.+|+|+|..|+|||++.+++...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            368999999999999999998653

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.032  Score=43.65  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=21.5

Q ss_pred             eEEEEEcC-CCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGS-PRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~-pGSGKST~a~~La~~l  102 (268)
                      ++++|.|. +|+||||++-.||..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            67999999 5999999999998876

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.64  E-value=0.027  Score=40.64  Aligned_cols=21  Identities=19%  Similarity=0.075  Sum_probs=17.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAE   96 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~   96 (268)
                      +++...+|.+++|||||.++-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            356788999999999997763

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.60  E-value=0.037  Score=48.85  Aligned_cols=25  Identities=12%  Similarity=-0.121  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      -.|+|.||.||||||....+-+..+
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4599999999999998888877664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.44  E-value=0.035  Score=45.67  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+|.|++|+||+++|+.|.+.-
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            8999999999999999998643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.26  E-value=0.042  Score=45.90  Aligned_cols=30  Identities=20%  Similarity=0.136  Sum_probs=25.0

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |+.| ++.+.-|.|++|||||++|-.++...
T Consensus        52 GGip-~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          52 GGIP-RGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             SSEE-TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcc-CceEEEEecCCccchHHHHHHHHHHH
Confidence            4556 77789999999999999998887643

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.19  E-value=0.051  Score=45.42  Aligned_cols=29  Identities=21%  Similarity=0.100  Sum_probs=24.5

Q ss_pred             CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      ++.| .+....|.|+|||||||+|-.++..
T Consensus        55 gG~~-~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          55 GGLP-RGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SSBC-SSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCcc-cceeEEEecCCCcHHHHHHHHHHHH
Confidence            4566 7788999999999999999887764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.05  E-value=0.06  Score=44.10  Aligned_cols=27  Identities=15%  Similarity=0.096  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ....+|++.|.-|+||||++-.||..+
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356778999999999999988887765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.34  E-value=0.052  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLS   99 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La   99 (268)
                      .+.+|.|+|.||+||||+...|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999999985

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.14  E-value=0.063  Score=45.32  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|-++.|.|++|+|||+++..+++..
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999998743

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.12  E-value=0.064  Score=42.63  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .+|+|+|-+++||||++.+|-...|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            5799999999999999999965443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.05  E-value=0.022  Score=46.70  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ++...+|+|++|+||||+...|....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            45668899999999999999886443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.96  E-value=0.074  Score=44.10  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .++.+|.|+|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            46788999999999999999999754

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.1  Score=38.64  Aligned_cols=26  Identities=15%  Similarity=0.065  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ||..-+|+||+.|||||..-+.+.++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            56677899999999999777666655

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.21  E-value=0.094  Score=43.93  Aligned_cols=26  Identities=15%  Similarity=0.353  Sum_probs=23.1

Q ss_pred             cCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390           75 RRRGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        75 p~~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      +...|+|-|+|.|.+||||+-..|..
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            35678999999999999999999975

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=0.023  Score=43.26  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      ..+|+|+-||||||+...|.--+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999998655

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.85  E-value=0.19  Score=37.62  Aligned_cols=27  Identities=11%  Similarity=-0.082  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|..=+|+||+.|||||-.-+.++++
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            467778999999999999887777765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=88.83  E-value=0.11  Score=45.15  Aligned_cols=23  Identities=22%  Similarity=0.157  Sum_probs=18.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...++|+|++|||||+..+.+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            34699999999999998766543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.81  E-value=0.14  Score=42.42  Aligned_cols=24  Identities=25%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ++++|-|+|.|.+||||+-..|..
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHC
Confidence            357899999999999999999975

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.39  E-value=0.1  Score=43.13  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .-+|+|+-|||||++-.+|+=-+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            468999999999999988854443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.99  E-value=0.18  Score=42.01  Aligned_cols=28  Identities=14%  Similarity=-0.056  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      +-.+|.|+|..||||||++..|...-|.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            4457999999999999999999766554

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.88  E-value=0.2  Score=39.39  Aligned_cols=22  Identities=18%  Similarity=0.036  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+..|..|+||||++..||..+
T Consensus         5 av~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           5 TVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEECCCCCChHHHHHHHHHHHH
Confidence            3555999999999999888765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.81  E-value=0.22  Score=41.39  Aligned_cols=24  Identities=17%  Similarity=0.091  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ..+.|+++|...|||||+...|..
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhC
Confidence            345799999999999999999863

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.70  E-value=0.19  Score=40.83  Aligned_cols=24  Identities=21%  Similarity=0.112  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      +.|.|.|.=|+||||++-.||..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            468889999999999999888765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.63  E-value=0.23  Score=39.86  Aligned_cols=27  Identities=11%  Similarity=0.014  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      -.+|+++|-..+||||++.+|....|.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            456999999999999999999766664

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.35  E-value=0.23  Score=38.95  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             CeEEEEE-cCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFI-GSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~-G~pGSGKST~a~~La~~l  102 (268)
                      +++|.|. +..|+||||++..||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            4566666 778999999999998765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.10  E-value=0.19  Score=39.52  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|+|+|-+.+||||++.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            57999999999999999988653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.95  E-value=0.18  Score=38.84  Aligned_cols=20  Identities=15%  Similarity=0.144  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhHHHHHHHH
Q 024390           81 WAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~  100 (268)
                      .++++|.|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            67889999999998777664

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.85  E-value=0.21  Score=41.64  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~  101 (268)
                      .+|.++.|+|++|+|||+++..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            57889999999999999999998765

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.77  E-value=0.13  Score=40.22  Aligned_cols=23  Identities=26%  Similarity=0.118  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024390           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        81 IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      |+|+|+.+||||..|..|+...+
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCS
T ss_pred             EEEECCCCccHHHHHHHHHhcCC
Confidence            79999999999999999986543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.54  E-value=0.3  Score=36.29  Aligned_cols=25  Identities=20%  Similarity=-0.116  Sum_probs=18.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      |..=+|+||+.|||||-.-+.++++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            4556889999999999655555554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=86.21  E-value=0.21  Score=38.67  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|.|+|-+.+||||+..+|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            4689999999999999999964

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=86.10  E-value=0.28  Score=40.60  Aligned_cols=26  Identities=19%  Similarity=0.135  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .+|.|+|..|+||||++..|.-.-|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            36999999999999999999654443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.86  E-value=0.18  Score=43.03  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~  103 (268)
                      .-+|+|+-|||||++..+|+=-+|
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            457889999999999999863333

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.63  E-value=0.31  Score=38.20  Aligned_cols=26  Identities=15%  Similarity=0.036  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           80 HWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      +.+|.+++|+|||.++-.++.+++..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCc
Confidence            46778899999999998888877643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.56  E-value=0.29  Score=38.19  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+|.|+|...+||||+..+|..
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEEccCCcHHHHHHHHHh
Confidence            5799999999999999999964

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.29  E-value=0.29  Score=39.56  Aligned_cols=23  Identities=13%  Similarity=0.083  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      ...++|.||.+|||||+.|.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            35689999999999999998865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.97  E-value=0.23  Score=41.55  Aligned_cols=22  Identities=14%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~  100 (268)
                      |.|-|+|.|.+||||+-..|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            5799999999999999999954

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.49  E-value=0.34  Score=39.74  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024390           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~La~~l  102 (268)
                      .+|+|.|.=|+||||++-.||..+
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            457889999999999888776654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.42  E-value=0.42  Score=39.31  Aligned_cols=23  Identities=22%  Similarity=0.114  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+.|+|+|.-.|||||+...|..
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhC
Confidence            34699999999999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.16  E-value=0.41  Score=38.73  Aligned_cols=28  Identities=14%  Similarity=-0.019  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (268)
Q Consensus        78 ~~~IvI~G~pGSGKST~a~~La~~l~~~  105 (268)
                      .++|+|+|-.++||||++.+|.-..|..
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            3689999999999999999998777753

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.03  E-value=0.14  Score=39.97  Aligned_cols=19  Identities=26%  Similarity=0.204  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCCChhHHHHH
Q 024390           79 VHWAFIGSPRAKKHVYAEM   97 (268)
Q Consensus        79 ~~IvI~G~pGSGKST~a~~   97 (268)
                      ..+++.+|+|||||+.+..
T Consensus        41 ~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHHH
Confidence            4589999999999987643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.84  E-value=0.56  Score=32.40  Aligned_cols=28  Identities=32%  Similarity=0.223  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (268)
Q Consensus        76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~  104 (268)
                      .+.++|.|+|.-|+|-|.+|+.|.++ |+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~-G~   33 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE-GY   33 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH-TC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC-CC
Confidence            56778999999999999999988764 55

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.12  E-value=0.41  Score=38.43  Aligned_cols=21  Identities=14%  Similarity=0.072  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024390           80 HWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        80 ~IvI~G~pGSGKST~a~~La~  100 (268)
                      .++|.||..+||||+.+.++-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            589999999999999998764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.42  E-value=0.32  Score=38.73  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=18.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024390           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (268)
Q Consensus        77 ~~~~IvI~G~pGSGKST~a~~La~  100 (268)
                      .+..+++++|.|||||+.+-..+.
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHHH
Confidence            455689999999999987765553