Citrus Sinensis ID: 024402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIVV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHccEEEEEEccccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccHHHHHEccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
MEPNDTQQLQQlnsyfhhptatttsgaaattgpsptngllpsqhqhhnnnnnndgggggggmvyphsvassamtstlepakkkrgrprkygtpeqALAAKKTAAYSNSKGKREQRELHQQQQQLlgsggsgssysgapgksqlggignlgqgftphvISVAAGEDVGQKIMLFMQQSKREICILSasgsisnaslrqpatsggnityeGRFEIVSLSGsyvrtdlggrtgglsvclsstdgqiigggvggplkaagpvQVMYKCAIVV
Flexible Loop (DISEMBL)
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTStlepakkkrgrprkygtpeqalaakktaAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASgsisnaslrqpatsggnitYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIVV
Low Complexity Region (SEG)
MEPNDTQQLQQLNSYFHHptatttsgaaattgpsptNGLLPSQHQHHnnnnnndgggggggMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHqqqqqllgsggsgssysgAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDgqiigggvggplkaagpvQVMYKCAIVV
Disordered region (IsUnstruct)
************************************************************************************************************************************************GIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSAS**************GGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIV*
Disordered Region (DISOPRED)
****************************************************************************************************************************************************LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTD*GGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIVV
Disordered Region (DISEMBL)
********LQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVAS*****************************************************************GAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIVV
Disordered Region (DISPRO)
*********************TTTSGAAATTGPSPTNGLLPSQHQHHNNNN*****GGGGG*********************************QALAAK*********************************************IGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.395	0.340	0.365	4e-08

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 9/115 (7%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---------SGGNIT 206
           HV+ V+ G D+ + +  + ++  R + +L  +G++SN +LRQP T          GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175

Query: 207 YEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
             GRFEI+SL+G+ +        GGLS+ L+   GQ++GG V  PL A+ PV +M
Sbjct: 176 LHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILM 230

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
6175163	418	unknown protein [Arabidopsis thaliana] g	0.895	0.574	0.564	1e-62
356506003	346	PREDICTED: uncharacterized protein LOC10	0.861	0.667	0.586	4e-62
225463960	357	PREDICTED: uncharacterized protein LOC10	0.861	0.647	0.556	1e-61
79596510	309	AT hook motif DNA-binding family protein	0.869	0.754	0.567	1e-60
297833142	408	hypothetical protein ARALYDRAFT_477717 [	0.869	0.571	0.563	2e-60
30679188	411	AT hook motif DNA-binding family protein	0.869	0.566	0.567	5e-60
449443249	362	PREDICTED: uncharacterized protein LOC10	0.947	0.701	0.617	1e-58
118484865	369	unknown [Populus trichocarpa]	0.914	0.663	0.570	4e-58
147835652	285	hypothetical protein VITISV_034305 [Viti	0.694	0.652	0.661	2e-57
326367379	351	DNA-binding family protein [Coffea arabi	0.929	0.709	0.544	2e-57

>gi|6175163|gb|AAF04889.1|AC011437_4 unknown protein [Arabidopsis thaliana] gi|119657372|tpd|FAA00285.1| TPA: AT-hook motif nuclear localized protein 14 [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/250 (56%), Positives = 181/250 (72%), Gaps = 10/250 (4%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           A SGGN+ YEG++EI+SLSGSY+RT+ GG++GGLSV LS++DGQIIGG +G  L AAGPV
Sbjct: 217 APSGGNLPYEGQYEILSLSGSYIRTEQGGKSGGLSVSLSASDGQIIGGAIGSHLTAAGPV 276

Query: 259 QVMYKCAIVV 268
           QV + C IV+
Sbjct: 277 QVQFCCIIVI 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506003|ref|XP_003521778.1| PREDICTED: uncharacterized protein LOC100809675 [Glycine max]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/273 (58%), Positives = 180/273 (65%), Gaps = 42/273 (15%)

Query: 1   MEPNDTQQLQQLNSYF---HHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGG 57
           MEPND     QL S+F   H             T  SPTNGLLP          N D   
Sbjct: 1   MEPNDN----QLTSFFHHHHQQHQHHQPPPPPQTTASPTNGLLP----------NAD--- 43

Query: 58  GGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQ---ALAAKKTAAYSNSKGKREQ 114
            G  ++YPHSVA SA++S LEPAK+KRGRPRKYGTPEQ   A  A  T ++S S  K+  
Sbjct: 44  -GSHILYPHSVA-SAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTLSHSFSVDKKPH 101

Query: 115 RELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFM 174
                  +                 KS    +GN GQGFTPHVISVAAGEDVGQKIMLFM
Sbjct: 102 SPTFPSSK-----------------KSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFM 144

Query: 175 QQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSV 234
           QQS+RE+CILSASGSISNASLRQPATSGG+I YEGRFEI+SL+GSYVR +LG RTGGLSV
Sbjct: 145 QQSRREMCILSASGSISNASLRQPATSGGSIAYEGRFEIISLTGSYVRNELGTRTGGLSV 204

Query: 235 CLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIV 267
           CLS+TDGQIIGGGVGGPLKAAGPVQV+     +
Sbjct: 205 CLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFI 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463960|ref|XP_002270792.1| PREDICTED: uncharacterized protein LOC100261576 [Vitis vinifera] gi|296087886|emb|CBI35169.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/282 (55%), Positives = 184/282 (65%), Gaps = 51/282 (18%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATT---------------TSGAAATTGPSPTNGLLPSQHQ 45
           MEPNDT+    L SYFHH                    T    A T  SP+NGLLP   +
Sbjct: 1   MEPNDTR----LTSYFHHHQQQPQPPPPPPPQPQPHHQTQNPVAATAASPSNGLLPPSER 56

Query: 46  HHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAY 105
                           + Y HSV S A+TS  E  ++KRGRPRKYGT EQ L+AKK+ + 
Sbjct: 57  PP--------------LGYHHSVPS-AVTSPPETVRRKRGRPRKYGTSEQGLSAKKSPSS 101

Query: 106 SNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGED 165
           S    K++++          G GGS         KSQL  +GN GQ FTPHVI+VA+GED
Sbjct: 102 SVPVPKKKEQ----------GLGGSSK-------KSQLVSLGNAGQSFTPHVITVASGED 144

Query: 166 VGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDL 225
           V QKIM FMQQSKREICI+SASGSISNASLRQPATSGGN+ YEGRFEI+SL+GSYVRT++
Sbjct: 145 VAQKIMFFMQQSKREICIMSASGSISNASLRQPATSGGNVAYEGRFEILSLTGSYVRTEI 204

Query: 226 GGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIV 267
           GGRTGGLSVCLS+TDG+IIGGGVGGPLKAAGPVQV+    +V
Sbjct: 205 GGRTGGLSVCLSNTDGEIIGGGVGGPLKAAGPVQVIVGTFLV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79596510|ref|NP_850512.2| AT hook motif DNA-binding family protein [Arabidopsis thaliana] gi|332640580|gb|AEE74101.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/243 (56%), Positives = 177/243 (72%), Gaps = 10/243 (4%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           A SGGN+ YEG++EI+SLSGSY+RT+ GG++GGLSV LS++DGQIIGG +G  L AAGPV
Sbjct: 217 APSGGNLPYEGQYEILSLSGSYIRTEQGGKSGGLSVSLSASDGQIIGGAIGSHLTAAGPV 276

Query: 259 QVM 261
           QV+
Sbjct: 277 QVI 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833142|ref|XP_002884453.1| hypothetical protein ARALYDRAFT_477717 [Arabidopsis lyrata subsp. lyrata] gi|297330293|gb|EFH60712.1| hypothetical protein ARALYDRAFT_477717 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/243 (56%), Positives = 176/243 (72%), Gaps = 10/243 (4%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 45  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 100

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +E+REL         +GG+ S+ SG+ 
Sbjct: 101 PLKRKRGRPRKYVTPEQALAAKKMASSASSSSAKERRELAAV------TGGTVSTNSGSS 154

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 155 KKSQLGSVGKTGQCFTPHIVNIAPGEDVAQKIMIFANQSKHELCVLSASGTISNASLRQP 214

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           AT+G N+ +EG++EI+SLSGSY+RT+ GG+TGGLS  LS++DGQIIGG +G  L AAGPV
Sbjct: 215 ATAGVNLPHEGQYEILSLSGSYIRTEQGGKTGGLSASLSASDGQIIGGAIGTHLTAAGPV 274

Query: 259 QVM 261
           QV+
Sbjct: 275 QVI 277

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679188|ref|NP_187109.2| AT hook motif DNA-binding family protein [Arabidopsis thaliana] gi|119935918|gb|ABM06034.1| At3g04590 [Arabidopsis thaliana] gi|225898615|dbj|BAH30438.1| hypothetical protein [Arabidopsis thaliana] gi|332640581|gb|AEE74102.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 138/243 (56%), Positives = 177/243 (72%), Gaps = 10/243 (4%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           A SGGN+ YEG++EI+SLSGSY+RT+ GG++GGLSV LS++DGQIIGG +G  L AAGPV
Sbjct: 217 APSGGNLPYEGQYEILSLSGSYIRTEQGGKSGGLSVSLSASDGQIIGGAIGSHLTAAGPV 276

Query: 259 QVM 261
           QV+
Sbjct: 277 QVI 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443249|ref|XP_004139392.1| PREDICTED: uncharacterized protein LOC101221844 [Cucumis sativus] gi|449520142|ref|XP_004167093.1| PREDICTED: uncharacterized protein LOC101229030 [Cucumis sativus]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/269 (61%), Positives = 191/269 (71%), Gaps = 15/269 (5%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGG 60
           MEPN+ Q    L+SYF              T  SPTNGLLP  H       ++D G    
Sbjct: 1   MEPNENQ----LSSYF----HHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPH-- 50

Query: 61  GMVYPHSVASSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQR-ELH 118
            +VYPHSV S+A++S+ LEPA++KRGRPRKYGTPE+ALAAKK A  S+     + + EL 
Sbjct: 51  -VVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELA 109

Query: 119 QQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSK 178
                 L +  + SS+S    KSQL  +GN GQGF PHVI+VAAGEDVGQKIM FMQQ K
Sbjct: 110 SSSS--LNAVSASSSFSTPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCK 167

Query: 179 REICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSS 238
           REICILSASGSISNASLRQPA SGGNI YEGRFEIVSL GSYVRTDLGG+TGGLSVCLSS
Sbjct: 168 REICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSS 227

Query: 239 TDGQIIGGGVGGPLKAAGPVQVMYKCAIV 267
            +G IIGGGVGGPLKAAGPVQV+    ++
Sbjct: 228 AEGHIIGGGVGGPLKAAGPVQVIVGTFVI 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484865|gb|ABK94299.1| unknown [Populus trichocarpa]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 157/275 (57%), Positives = 186/275 (67%), Gaps = 30/275 (10%)

Query: 1   MEPNDT-QQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGG 59
           MEPND+ QQ Q   SYF   T TTT+   +      TNGLLP  HQ  ++         G
Sbjct: 1   MEPNDSHQQQQHFTSYFSTTTTTTTTTTPSP-----TNGLLPP-HQPTDSTTPT-----G 49

Query: 60  GGMVYPHSVASSA-------------MTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYS 106
             M+YPHS+  S                +    AK+KRGRPRKYGTPEQALAAKKTA+ +
Sbjct: 50  PHMLYPHSMGPSTTATVTGGGGAPVEAAAAAAAAKRKRGRPRKYGTPEQALAAKKTASSN 109

Query: 107 NSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDV 166
           ++   RE++E    Q     +  S S+YS    KSQ   +GN G GFTPHVI+VA GEDV
Sbjct: 110 SAAAYREKKE---HQAGSSSTISSFSAYSSK--KSQHASLGNAGHGFTPHVITVAEGEDV 164

Query: 167 GQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLG 226
            QKIM F+QQS RE+CILSASGSI +ASL QPATSGGNI+YEGR+EI+SL GSYVRT++G
Sbjct: 165 TQKIMHFLQQSMREMCILSASGSILSASLSQPATSGGNISYEGRYEIISLCGSYVRTEMG 224

Query: 227 GRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
           GR GGLSVCLS T+GQIIGGGVGGPLKAAGPVQV+
Sbjct: 225 GRAGGLSVCLSDTNGQIIGGGVGGPLKAAGPVQVI 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835652|emb|CAN72947.1| hypothetical protein VITISV_034305 [Vitis vinifera]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 158/204 (77%), Gaps = 18/204 (8%)

Query: 64  YPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQ 123
           Y HSV S A+TS  E  ++KRGRPRKYGT EQ L+AKK+ + S    K++++ L      
Sbjct: 16  YHHSVPS-AVTSPPETVRRKRGRPRKYGTSEQGLSAKKSPSSSVPVPKKKEQGL------ 68

Query: 124 LLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
               GGS         KSQL  +GN GQ FTPHVI+VA+GEDV QKIM FMQQSKREICI
Sbjct: 69  ----GGSSK-------KSQLVSLGNAGQSFTPHVITVASGEDVAQKIMFFMQQSKREICI 117

Query: 184 LSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQI 243
           +SASGSISNASLRQPATSGGN+ YEGRFEI+SL+GSYVRT++GGRTGGLSVCLS+TDG+I
Sbjct: 118 MSASGSISNASLRQPATSGGNVAYEGRFEILSLTGSYVRTEIGGRTGGLSVCLSNTDGEI 177

Query: 244 IGGGVGGPLKAAGPVQVMYKCAIV 267
           IGGGVGGPLKAAGPVQV+    +V
Sbjct: 178 IGGGVGGPLKAAGPVQVIVGTFLV 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326367379|gb|ADZ55297.1| DNA-binding family protein [Coffea arabica]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/283 (54%), Positives = 185/283 (65%), Gaps = 34/283 (12%)

Query: 1   MEPNDTQQLQQLNSYFHH-----------PTATTTSGAAATTGPSPTNGLLPSQHQHHNN 49
           M+PN++ +L   +SYFHH           PTA TT+  + T   SPTNG+LP        
Sbjct: 1   MDPNESSEL---SSYFHHPQQPPPPSPLNPTAPTTAVGSNT---SPTNGILP-------- 46

Query: 50  NNNNDGGGGGGGMVYP--HSVASSAMTST---LEPAKKKRGRPRKYGTPEQALAAKKTAA 104
           N +N           P  +    S +TS    L+  K+KRGRPRKYGTP +A AAK+ ++
Sbjct: 47  NTSNPAASTTTTTSSPLVYGTVPSVVTSGGAGLDSGKRKRGRPRKYGTPGEAAAAKRLSS 106

Query: 105 YSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGE 164
            S +      ++         G   S +S      K QL   G+ GQ F PHVI+VAAGE
Sbjct: 107 ASTAASISPPKKKDLGFGGGGGGSTSSASSK----KYQLAASGSTGQSFIPHVITVAAGE 162

Query: 165 DVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTD 224
           DVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRF+I+SL GSYVRT+
Sbjct: 163 DVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFDILSLCGSYVRTE 222

Query: 225 LGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAIV 267
           LGGRTGGLSVCLSSTDGQIIGGGVGGPL AAGP+Q++    ++
Sbjct: 223 LGGRTGGLSVCLSSTDGQIIGGGVGGPLTAAGPIQIIVGTFVI 265

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2084983	411	AT3G04590 [Arabidopsis thalian	0.835	0.545	0.493	1.9e-53
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.656	0.435	0.433	3e-30
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.347	0.261	0.593	3.3e-30
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.600	0.458	0.458	1.6e-29
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.361	0.231	0.564	4.5e-29
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.328	0.263	0.560	1.4e-27
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.604	0.509	0.433	1.2e-26
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.593	0.411	0.429	2.5e-26
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.369	0.225	0.514	4.5e-26
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.574	0.442	0.418	7.6e-25

TAIR|locus:2084983 AT3G04590 [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 120/243 (49%), Positives = 151/243 (62%)

Query:     7 QQLQQLNS-YFHHX--------XXXXXXXXXXXXXXXXXNGLLPSQHQHHXXXXXXXXXX 57
             QQ Q+L S YFHH                          NGL P Q Q            
Sbjct:    26 QQQQRLTSPYFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQPQPQHQPNDGSSSL 85

Query:    58 XXXXMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQREL 117
                  VYPHSV SSA+T+ +EP K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL
Sbjct:    86 A----VYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRREL 141

Query:   118 HXXXXXXXXXXXXXXXXXXAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQS 177
                                +  KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QS
Sbjct:   142 ------AAVTGGTVSTNSGSSKKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQS 195

Query:   178 KREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLS 237
             K E+C+LSASG+ISNASLRQPA SGGN+ YEG++EI+SLSGSY+RT+ GG++GGLSV LS
Sbjct:   196 KHELCVLSASGTISNASLRQPAPSGGNLPYEGQYEILSLSGSYIRTEQGGKSGGLSVSLS 255

Query:   238 STD 240
             ++D
Sbjct:   256 ASD 258

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 81/187 (43%), Positives = 104/187 (55%)

Query:    65 PHSVASSAMTSTLEPAKKKRGRPRKY---GTPEQALAAK--KTAAYSNSKGKREQRELHX 119
             P S+      ++ E  KKKRGRPRKY   GT    L+     ++    S+    +R    
Sbjct:    70 PFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSVPLTSEFPPRKRGRGR 129

Query:   120 XXXXXXXXXXXXXXXXXAPGKSQLGGIGN---LGQGFTPHVISVAAGEDVGQKIMLFMQQ 176
                              +P  + L G+G    +G  FTPHV+ V AGEDV  KIM F QQ
Sbjct:   130 GKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQ 189

Query:   177 SKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLS 233
               R ICILSA+G ISN +LRQ  TSGG +TYEGRFEI+SL+GS+++ D GG   R GG+S
Sbjct:   190 GSRAICILSANGPISNVTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMS 249

Query:   234 VCLSSTD 240
             VCL+  D
Sbjct:   250 VCLAGPD 256

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query:   148 NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITY 207
             ++G  FTPH+I+V  GEDV  KI+ F QQ  R IC+LSA+G IS+ +LRQP +SGG +TY
Sbjct:   165 SVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTY 224

Query:   208 EGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTD 240
             EGRFEI+SLSGS++  D GG   RTGG+SV L+S D
Sbjct:   225 EGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPD 260

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 82/179 (45%), Positives = 98/179 (54%)

Query:    70 SSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXX 128
             S  MT T  EP KK+RGRPRKYG P+             S G                  
Sbjct:    85 SGGMTGTGSEPVKKRRGRPRKYG-PDSG---------EMSLGLNPGAPSFTVSQPSSGGD 134

Query:   129 XXXXXXXXAPGKS----QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICIL 184
                      PG S    +L  +G+ G GFTPHV++V AGEDV  KIM       R +C+L
Sbjct:   135 GGEKKRGRPPGSSSKRLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVL 194

Query:   185 SASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTD 240
             SA+G+ISN +LRQ ATSGG +TYEGRFEI+SLSGS+   +  G   RTGGLSV LSS D
Sbjct:   195 SANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPD 253

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
 Identities = 57/101 (56%), Positives = 71/101 (70%)

Query:   144 GGIGNL-GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG 202
             GG   +    FTPHV++V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ  TSG
Sbjct:   168 GGPAEIVSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSG 227

Query:   203 GNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTD 240
             G +TYEG FEI+SL+GS++ ++ GG   R GG+SV L+  D
Sbjct:   228 GTLTYEGHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQD 268

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 51/91 (56%), Positives = 70/91 (76%)

Query:   153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFE 212
             FTPH+I+V AGEDV ++I+ F QQ    IC+L A+G +S+ +LRQP +SGG +TYEGRFE
Sbjct:   150 FTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYEGRFE 209

Query:   213 IVSLSGSYVRTDLGG---RTGGLSVCLSSTD 240
             I+SLSG+++ +D  G   RTGG+SV L+S D
Sbjct:   210 ILSLSGTFMPSDSDGTRSRTGGMSVSLASPD 240

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 75/173 (43%), Positives = 99/173 (57%)

Query:    73 MTSTLEPA-KKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXXXXX 131
             M S+ E + KK+RGRPRKY      L +           KR + +L+             
Sbjct:    47 MPSSGEASGKKRRGRPRKYEANGAPLPSSSVPLVK----KRVRGKLNGFDMKKMHKTIGF 102

Query:   132 XXXXXAPGKSQLGGIGN-LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSI 190
                    G    GG+G  +G  FTPHVI+V  GED+  +I+ F QQ  R ICILSA+G I
Sbjct:   103 HSSGERFGVG--GGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVI 160

Query:   191 SNASLRQPATSGGNITYEGRFEIVSLSGSYVRTD-LG--GRTGGLSVCLSSTD 240
             SN +LRQP + GG +TYEGRFEI+SLSGS++ T+  G  GR+GG+SV L+  D
Sbjct:   161 SNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPD 213

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 73/170 (42%), Positives = 94/170 (55%)

Query:    81 KKKRGRPRKYGTPEQALA------AKKTAAYSNSKGKREQRELHXXXXXXXXXXXXXXXX 134
             KKKRGRPRKY TP+ ++A      +   +A SNS G+    +                  
Sbjct:   102 KKKRGRPRKY-TPDGSIALGLAPTSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNRGR 160

Query:   135 XXAPGKSQLGGIGNL-GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNA 193
                  K QL  +G   G GFTPHVI V  GED+  K+M F  Q  R ICILSASG++S  
Sbjct:   161 PPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRV 220

Query:   194 SLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTD 240
              LRQ + S G +TYEGRFEI++LSGS +  ++ G   R+G LSV L+  D
Sbjct:   221 MLRQASHSSGIVTYEGRFEIITLSGSVLNYEVNGSTNRSGNLSVALAGPD 270

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
 Identities = 54/105 (51%), Positives = 69/105 (65%)

Query:   139 GKSQLGGIGNLGQ-GFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQ 197
             GK QL  +G  G  GFTPHVI V  GED+  KI+ F  Q  R ICILSA+G+++N  LRQ
Sbjct:   206 GKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQ 265

Query:   198 PATSG--GNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLS 237
                S   G + YEGRFEI+SLSGS++ ++  G   +TG LSV L+
Sbjct:   266 ANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTGNLSVSLA 310

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 69/165 (41%), Positives = 87/165 (52%)

Query:    79 PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXXXXXXXXXXAP 138
             P K+KRGRPRKYG       A  +++ S        +                      P
Sbjct:    96 PMKRKRGRPRKYGQDGSVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMP 155

Query:   139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
               S        G  FTPHVI+V+ GED+  K++ F QQ  R IC+LSASG++S A+L QP
Sbjct:   156 SSS--------GMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQP 207

Query:   199 ATSGGNITYEGRFEIVSLSGSY-VRTD--LGGRTGGLSVCLSSTD 240
             + S G I YEGRFEI++LS SY V TD     RTG LSV L+S D
Sbjct:   208 SASPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPD 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__418__AT3G04590.2 annotation not avaliable (408 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	2e-35
cd11378	113	cd11378, DUF296, Domain of unknown function found	3e-29
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	4e-04

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  122 bits (309), Expect = 2e-35
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 6/113 (5%)

Query: 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP---ATSGGNITYEG 209
             PHV+ +  GED+ + +  F +Q      +LS  G++SN +LRQP   A S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 210 RFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGV-GGPLKAAGPVQVM 261
           RFEI+SLSG+   +  G  +G L V L+  DGQ++GG +  G + A G V V 
Sbjct: 61  RFEILSLSGTI--SPGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVT 111

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  106 bits (267), Expect = 3e-29
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 5/111 (4%)

Query: 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---SGGNITYEGR 210
            P V+ +  GED+ + +  F ++   +  +LS  G++SNA+LR P         +T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 211 FEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
            EI+SLSG+    D G  +G L V L+ +DG++IGG + G L  AG V+V+
Sbjct: 61  LEILSLSGNISPDD-GKPSGHLHVSLADSDGRVIGGHLLGAL-VAGTVEVV 109

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 163 GEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNITYEGRFEIVSLSGS 219
           GED+  ++  F +Q      +++A G++ +A LR           I      E++SL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 220 YVRTDLGGRTGGLSVCLSSTDGQIIGG 246
               D       L   L   +G  +GG
Sbjct: 79  IALDDPFVH---LHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.97
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.94
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.5
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.43
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	87.26
PF13546	273	DDE_5: DDE superfamily endonuclease	80.99

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.97  E-value=1.2e-30  Score=212.62  Aligned_cols=113  Identities=29%  Similarity=0.394  Sum_probs=100.4

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCC--CCCCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402          153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPA--TSGGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (268)
Q Consensus       153 frphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~--~s~~~~t~eG~fEILSLsGnis~~d~g~~~~  230 (268)
                      ||+|++||++||||+++|++||+++++++|+|++||+|++|+|++++  ..+...+++|+|||+||+|||+. .+++++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~-~~g~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP-EDGKPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE-ETTEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC-CCCCCcc
Confidence            79999999999999999999999999999999999999999999994  45688999999999999999998 4468999


Q ss_pred             ceEEEEeCCCCcEEeeecC-CcceEeccEEEEEEEee
Q 024402          231 GLSVCLSSTDGQIIGGGVG-GPLKAAGPVQVMYKCAI  266 (268)
Q Consensus       231 HLHISLad~dG~V~GGHL~-g~lIaAt~VqVVvgsF~  266 (268)
                      |+|++|+|.||+++||||. +.++++.+|+|+..+++
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~~~~  116 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTVFATAEVVITELSGI  116 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEETTE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEecCc
Confidence            9999999999999999999 66667777777776654

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.94  E-value=1e-26  Score=196.99  Aligned_cols=111  Identities=20%  Similarity=0.242  Sum_probs=103.4

Q ss_pred             CCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCC---CCCceeeeeeeeEEEeeeeeeecCCCC
Q 024402          151 QGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---SGGNITYEGRFEIVSLSGSYVRTDLGG  227 (268)
Q Consensus       151 ~~frphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~---s~~~~t~eG~fEILSLsGnis~~d~g~  227 (268)
                      ..-|.|++||++|||+++.|.+||+++++.+++++|||+|++++|+|++.   +|.+++++|+|||+||.|||+.++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            34589999999999999999999999999999999999999999999975   368999999999999999999887   


Q ss_pred             CCcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402          228 RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA  265 (268)
Q Consensus       228 ~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF  265 (268)
                      |+.|||++|++++|+++||||.++++.. ++||+|...
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el  120 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIREL  120 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEc
Confidence            8999999999999999999999999998 899988654

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.50  E-value=0.00092  Score=36.11  Aligned_cols=11  Identities=73%  Similarity=1.202  Sum_probs=4.6

Q ss_pred             cccCCCCCCCC
Q 024402           81 KKKRGRPRKYG   91 (268)
Q Consensus        81 kkkrGRPrKy~   91 (268)
                      +|+||||||+.
T Consensus         1 ~r~RGRP~k~~   11 (13)
T PF02178_consen    1 KRKRGRPRKNA   11 (13)
T ss_dssp             S--SS--TT--
T ss_pred             CCcCCCCcccc
Confidence            68999999985

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.43  E-value=0.0015  Score=41.35  Aligned_cols=14  Identities=57%  Similarity=0.873  Sum_probs=11.7

Q ss_pred             cccCCCCCCCCCCC
Q 024402           81 KKKRGRPRKYGTPE   94 (268)
Q Consensus        81 kkkrGRPrKy~~~~   94 (268)
                      |||||||||+..+.
T Consensus         1 kRkRGRPrK~~~~~   14 (26)
T smart00384        1 KRKRGRPRKAPKDX   14 (26)
T ss_pred             CCCCCCCCCCCCcc
Confidence            69999999997553

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=87.26  E-value=0.21  Score=45.06  Aligned_cols=12  Identities=75%  Similarity=1.115  Sum_probs=10.6

Q ss_pred             cccccCCCCCCC
Q 024402           79 PAKKKRGRPRKY   90 (268)
Q Consensus        79 ~~kkkrGRPrKy   90 (268)
                      ..|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            479999999976

>PF13546 DDE_5: DDE superfamily endonuclease

Probab=80.99  E-value=0.85  Score=41.24  Aligned_cols=16  Identities=63%  Similarity=1.128  Sum_probs=11.7

Q ss_pred             ccccccCCCCCCCCCC
Q 024402           78 EPAKKKRGRPRKYGTP   93 (268)
Q Consensus        78 ~~~kkkrGRPrKy~~~   93 (268)
                      .+..+|||||||||.-
T Consensus       228 ~~~~~~rGRPr~~g~~  243 (273)
T PF13546_consen  228 PPPPPKRGRPRKYGRR  243 (273)
T ss_pred             cccCCCCCCCCCCCCc
Confidence            3445569999999943

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	8e-21
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	5e-20
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	2e-16
3htn_A	149	Putative DNA binding protein; DUF269 family protei	5e-10
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	2e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 85.1 bits (210), Expect = 8e-21
 Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYE 208
                 + + +  G++V  ++  F+QQ++ R   I   +GS+++ +LR         +  
Sbjct: 15  ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLT 73

Query: 209 GRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
           G FE++SL+G+   T        L + +S   G ++GG +         ++++
Sbjct: 74  GTFEVISLNGTLELTG-----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELV 121

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 82.7 bits (204), Expect = 5e-20
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 155 PHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYEGRFEI 213
              + +  G D+ Q+I+  +QQ +     I S  G +S   +R    S   +     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPFEI 62

Query: 214 VSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
           +SLSG+            L + ++   G++ GG +          ++M
Sbjct: 63  LSLSGTLTYQH-----CHLHIAVADAQGRVWGGHLLEGNLINTTAELM 105

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 73.1 bits (179), Expect = 2e-16
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 149 LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNI 205
           +      ++  V  GE++   I  F ++   E  I++  G++ N  +    +       I
Sbjct: 5   MFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVI 64

Query: 206 TYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
             +G +E++SL G+    D G       V L + +G + GG +         + + 
Sbjct: 65  PLKGSYELISLIGNVSLKD-GEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 136 GAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASL 195
           GA  +  +     +G  +   ++S+    ++ + +  F ++       ++  G+I   +L
Sbjct: 1   GAQNEKNMYSYKKIGNKY---IVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTL 57

Query: 196 R---QPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGG 246
           R       +  + T+  + EI +L+G+    +       L + +  +D   + G
Sbjct: 58  RFFNPKTKAYDDKTFREQMEISNLTGNISSMN-EQVYLHLHITVGRSDYSALAG 110

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNIT 206
            +     ++ +  G+D+ ++I  F+++       +SA G++ +A +    Q         
Sbjct: 6   FEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKE 65

Query: 207 YEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGG 246
                EI+SLSG+    D       + V L   DG++ GG
Sbjct: 66  LMEPLEILSLSGNVSMKD-SKPFCHIHVLL-GKDGEVYGG 103

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR--QPATSGGNITYEGRF 211
           T +++ +  G++V Q +    +            G +S A+           +       
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 212 EIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGG 246
           E+ +++GS    + G  +      ++    Q  GG
Sbjct: 73  EMANMTGSIAWKE-GKPSIHAHGTVTDGTFQGAGG 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.96
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.95
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.95
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.94

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.96  E-value=6.5e-29  Score=208.59  Aligned_cols=122  Identities=13%  Similarity=0.183  Sum_probs=105.3

Q ss_pred             CCcccccCCCCCCCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEE
Q 024402          139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVS  215 (268)
Q Consensus       139 ~k~~~~~~g~~g~~frphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILS  215 (268)
                      +++++...+..|   |.|++||++||||+++|++||+++++.+|+|+++|+|++|+|+|++.+   |..++++|+|||+|
T Consensus         4 ~~~~~~~y~~~g---r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~s   80 (149)
T 3htn_A            4 NEKNMYSYKKIG---NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISN   80 (149)
T ss_dssp             ---CCEEEEEET---TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEE
T ss_pred             CcccEEEEeecC---CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEE
Confidence            344554444444   899999999999999999999999999888899999999999998764   45789999999999


Q ss_pred             eeeeeeecCCCCCCcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402          216 LSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA  265 (268)
Q Consensus       216 LsGnis~~d~g~~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF  265 (268)
                      |+|||+++| ++|+.|||++|+|.||+++||||..+ ++..++||+|..+
T Consensus        81 l~Gti~~~d-G~p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~  128 (149)
T 3htn_A           81 LTGNISSMN-EQVYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDY  128 (149)
T ss_dssp             EEEEEEEET-TEEEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEEC
T ss_pred             eEEEEEccC-CCceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEc
Confidence            999999985 58999999999999999999999987 6667889888654

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.96  E-value=1.3e-28  Score=204.59  Aligned_cols=110  Identities=20%  Similarity=0.271  Sum_probs=100.4

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (268)
Q Consensus       154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILSLsGnis~~d~g~~~~  230 (268)
                      ++|++||++||||+++|++||+++++.+|+++++|+|++|+|+|++.+   |..++++|+|||+||+|||++.+ ++++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~-g~p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKD-GEPFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCC-CCcee
Confidence            799999999999999999999999999888899999999999999765   35788999999999999999975 58999


Q ss_pred             ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEee
Q 024402          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAI  266 (268)
Q Consensus       231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF~  266 (268)
                      |+|++|+|+||+++||||..++ .+ ++||++..|.
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~  122 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELK  122 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEE
T ss_pred             eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcC
Confidence            9999999999999999999777 55 8888887764

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.95  E-value=5.2e-28  Score=201.59  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=100.3

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCCC---CceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG---GNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (268)
Q Consensus       154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s~---~~~t~eG~fEILSLsGnis~~d~g~~~~  230 (268)
                      ++|++||++||||+++|++||+++++.+|+|+++|+|++++|++++.+.   ..++++|+|||+||+|||++.+ ++++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~d-g~p~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD-SKPFC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCC-CCcee
Confidence            6999999999999999999999999987778999999999999997754   5789999999999999999975 58999


Q ss_pred             ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEee
Q 024402          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAI  266 (268)
Q Consensus       231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF~  266 (268)
                      |||++|+ +||+++||||.+++|  .++||++.+|.
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~  121 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLS  121 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECB
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcC
Confidence            9999999 999999999998886  69999998874

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.95  E-value=5.5e-27  Score=195.25  Aligned_cols=108  Identities=21%  Similarity=0.303  Sum_probs=97.2

Q ss_pred             CceeEEEEecCCCcHHHHHHHHHHHcCcc-EEEEEeeceeeeEEEecCCCCCCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402          152 GFTPHVISVAAGEDVGQKIMLFMQQSKRE-ICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (268)
Q Consensus       152 ~frphVIrL~~GEDIve~I~~faq~~~ia-~~IlSaiGAVs~VtLr~~~~s~~~~t~eG~fEILSLsGnis~~d~g~~~~  230 (268)
                      .|++|++||++||||+++|++||+++++. +||++++|+|++++|++|+.+. .++++|+|||+||+|||+++     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence            38999999999999999999999999975 7777999999999999998754 68899999999999999985     37


Q ss_pred             ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA  265 (268)
Q Consensus       231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF  265 (268)
                      |+|++++|+||+++||||.+.++.+.++||++..|
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~  109 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY  109 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC
T ss_pred             EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc
Confidence            99999999999999999997666688999999775

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.95  E-value=7.3e-27  Score=197.05  Aligned_cols=112  Identities=20%  Similarity=0.314  Sum_probs=100.7

Q ss_pred             CCCCCceeEEEEecCCCcHHHHHHHHHHHcCcc-EEEEEeeceeeeEEEecCCCCCCceeeeeeeeEEEeeeeeeecCCC
Q 024402          148 NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKRE-ICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLG  226 (268)
Q Consensus       148 ~~g~~frphVIrL~~GEDIve~I~~faq~~~ia-~~IlSaiGAVs~VtLr~~~~s~~~~t~eG~fEILSLsGnis~~d~g  226 (268)
                      +....+++|++||++||||+++|++||+++++. +||++++|+|++|+|+|++.+. .++++|+|||+||+|||+.+   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            345688999999999999999999999999975 6777999999999999998755 78899999999999999985   


Q ss_pred             CCCcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402          227 GRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA  265 (268)
Q Consensus       227 ~~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF  265 (268)
                        ..|||++|+|.||+++||||...+++..++||++..|
T Consensus        89 --~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~  125 (154)
T 2hx0_A           89 --GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL  125 (154)
T ss_dssp             --EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC
T ss_pred             --CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc
Confidence              3799999999999999999997666668899999765

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.94  E-value=7.5e-27  Score=195.44  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=99.8

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (268)
Q Consensus       154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILSLsGnis~~d~g~~~~  230 (268)
                      +.+++||++||||+++|++||+++++.++++++||++++++|++++.+   |...+++ ++||+||+|||+.+| ++|+.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GKPSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CCceE
Confidence            569999999999999999999999999999999999999999999865   3467788 899999999999876 58999


Q ss_pred             ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA  265 (268)
Q Consensus       231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF  265 (268)
                      |+|++++|.||+++||||..+.|.+.++||++..+
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~  125 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY  125 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc
Confidence            99999999999999999998877666899988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	2e-18
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	1e-15

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 76.8 bits (189), Expect = 2e-18
 Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYEGRFEIV 214
           + + +  G++V  ++  F+QQ++ R   I   +GS+++ +LR         +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVI 67

Query: 215 SLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
           SL+G+   T        L + +S   G ++GG +         ++++
Sbjct: 68  SLNGTLELTG-----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELV 109

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNITYEGRFE 212
            ++ +  G+D+ ++I  F+++       +SA G++ +A +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 213 IVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQV 260
           I+SLSG+            + V L        G      + A     +
Sbjct: 72  ILSLSGNV-SMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.94

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=6.9e-28  Score=197.65  Aligned_cols=111  Identities=20%  Similarity=0.307  Sum_probs=102.1

Q ss_pred             CCCceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeEEEecCCCCCCceeeeeeeeEEEeeeeeeecCCCCC
Q 024402          150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGR  228 (268)
Q Consensus       150 g~~frphVIrL~~GEDIve~I~~faq~~~i-a~~IlSaiGAVs~VtLr~~~~s~~~~t~eG~fEILSLsGnis~~d~g~~  228 (268)
                      ++..|.|++||++||||+++|++||+++++ +++|++++|++++|+|++|+. .....++|++||+||+|||+..+.   
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~~---   78 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTGE---   78 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTEE---
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCCC---
Confidence            467799999999999999999999999997 577889999999999999964 456789999999999999998764   


Q ss_pred             CcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEee
Q 024402          229 TGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAI  266 (268)
Q Consensus       229 ~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF~  266 (268)
                        |+|++|+|.||+++||||.+++++++++||+|..|.
T Consensus        79 --HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~  114 (136)
T d2hx0a1          79 --HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  114 (136)
T ss_dssp             --EEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             --eEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEcc
Confidence              999999999999999999999999999999999873

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=4.6e-27  Score=191.79  Aligned_cols=108  Identities=21%  Similarity=0.228  Sum_probs=97.0

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (268)
Q Consensus       154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILSLsGnis~~d~g~~~~  230 (268)
                      |.|++||++||||+++|++||+++++++|+++++|++++++|++++.+   |..+.++|++||+||+|||...+ ++|+.
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~-g~p~~   88 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD-SKPFC   88 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCC-CCcEE
Confidence            899999999999999999999999999999999999999999998765   46789999999999999999887 48999


Q ss_pred             ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA  265 (268)
Q Consensus       231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF  265 (268)
                      |+|+++++ ||+++||||..++++++  ++++-+|
T Consensus        89 HlH~~~~~-~g~~~gGHl~~~~v~~~--e~~i~~~  120 (138)
T d2h6la1          89 HIHVLLGK-DGEVYGGHLFSAEVFAC--EVFVLPL  120 (138)
T ss_dssp             EEEEEEEE-BTEEEEEEEEEEEEEEE--EEEEEEC
T ss_pred             EEEEEECC-CCCEEEEEeCccEEEEE--EEEEEEe
Confidence            99999997 79999999998887754  5555444