Citrus Sinensis ID: 024426

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL
cccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHc
ccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
msfqdlqngsrsspsssskspsQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKlksvsesdrdtdvnqnkkvedAKLARDFQTVLQEFQKIQQLASerestyspsvppssappsttdtsgsgdfmgsenqpflMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVviddissniessaatTTHARVQLAKAsknvksrssWCWWVLAIIVVALVILLLVFIL
msfqdlqngsrsspssssksPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRilqlvkdtsaklksvsesdrdtdvnqnkkvedaKLARDFQTVLQEFQKIQQLAserestyspsvppssappsttdtsgSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKasknvksrssWCWWVLAIIVVALVILLLVFIL
MSFQDLQNGsrsspsssskspsQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASEREstyspsvppssappsttdtsgsGDFMGSENQPFLMEQKRQELFLLDneiafneaiieerehglreieeQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWvlaiivvalvilllvfil
************************VAAGIFQINTAVAAFRRLVDAIGTSKD***************************************************************************************************************ELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNI**********************SRSSWCWWVLAIIVVALVILLLVFI*
MSFQD*******************VAAGIFQINTAVAA*********************HNTRQRILQLVK***********************************************************************************************************EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL
************************VAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSA****************NKKVEDAKLARDFQTVLQEFQKIQQ***************************SGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES**********************SSWCWWVLAIIVVALVILLLVFIL
*******************SPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSP******************************EQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL
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MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
P93654268 Syntaxin-22 OS=Arabidopsi yes no 0.940 0.940 0.573 5e-74
Q39233279 Syntaxin-21 OS=Arabidopsi no no 0.929 0.892 0.539 4e-67
O04378255 Syntaxin-23 OS=Arabidopsi no no 0.888 0.933 0.557 5e-60
Q9C615416 Putative syntaxin-24 OS=A no no 0.686 0.442 0.463 1e-37
Q54JY7356 Syntaxin-7A OS=Dictyostel yes no 0.917 0.691 0.322 4e-31
O70439261 Syntaxin-7 OS=Mus musculu yes no 0.891 0.915 0.308 1e-20
O70257261 Syntaxin-7 OS=Rattus norv yes no 0.817 0.839 0.330 5e-20
Q5R602261 Syntaxin-7 OS=Pongo abeli yes no 0.817 0.839 0.317 2e-19
Q3ZBT5261 Syntaxin-7 OS=Bos taurus no no 0.824 0.846 0.311 2e-18
O15400261 Syntaxin-7 OS=Homo sapien yes no 0.779 0.800 0.310 6e-18
>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 Back     alignment and function desciption
 Score =  277 bits (709), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 148/258 (57%), Positives = 189/258 (73%), Gaps = 6/258 (2%)

Query: 1   MSFQDLQNGSRSSP---SSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQ 57
           MSFQDL++G   S    +   +  +QAVA+GIFQINT V+ F+RLV+ +GT KDT + R+
Sbjct: 1   MSFQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELRE 60

Query: 58  KLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQL 117
           KLH TR  I QLVKDTSAKLK  SE+D  + VN +KK+ DAKLARDFQ VL+EFQK QQ 
Sbjct: 61  KLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQT 120

Query: 118 ASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           A+ERE+TY+P VP S+ P S   T+G  D +  E +  L E KRQEL LLDNEIAFNEA+
Sbjct: 121 AAERETTYTPFVPQSALPSSY--TAGEVDKV-PEQRAQLQESKRQELVLLDNEIAFNEAV 177

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237
           IEERE G++EI +QIG+ NEIFKDLAVLV++QGV+IDDI ++I++S A T+  + QL +A
Sbjct: 178 IEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQA 237

Query: 238 SKNVKSRSSWCWWVLAII 255
           +K  KS SS    +L I 
Sbjct: 238 AKTQKSNSSLTCLLLVIF 255
May provide the t-SNARE function in the vacuolar assembly.
Arabidopsis thaliana (taxid: 3702)
>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 Back     alignment and function description
>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1 Back     alignment and function description
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1 Back     alignment and function description
>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 Back     alignment and function description
>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 Back     alignment and function description
>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 Back     alignment and function description
>sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 Back     alignment and function description
>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 Back     alignment and function description
>sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
357508487266 Syntaxin-22 [Medicago truncatula] gi|872 0.981 0.988 0.693 1e-103
388506962266 unknown [Medicago truncatula] 0.981 0.988 0.690 1e-102
356561098265 PREDICTED: syntaxin-22-like [Glycine max 0.921 0.932 0.730 1e-101
388495804266 unknown [Lotus japonicus] 0.936 0.943 0.691 1e-97
225451663268 PREDICTED: syntaxin-22 [Vitis vinifera] 0.929 0.929 0.764 4e-94
224131428270 predicted protein [Populus trichocarpa] 0.921 0.914 0.733 8e-92
118488433270 unknown [Populus trichocarpa] 0.921 0.914 0.733 1e-91
255543479264 syntaxin, plant, putative [Ricinus commu 0.917 0.931 0.710 8e-88
116788059273 unknown [Picea sitchensis] gi|148909620| 0.951 0.934 0.580 6e-77
388505230273 unknown [Lotus japonicus] 0.940 0.923 0.577 7e-76
>gi|357508487|ref|XP_003624532.1| Syntaxin-22 [Medicago truncatula] gi|87241300|gb|ABD33158.1| Syntaxin, N-terminal [Medicago truncatula] gi|355499547|gb|AES80750.1| Syntaxin-22 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/271 (69%), Positives = 224/271 (82%), Gaps = 8/271 (2%)

Query: 1   MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH 60
           MSFQD+Q+GS + PS  ++SPSQAVAAGIFQINTAVA FRRLVD++GT KDT +HRQKLH
Sbjct: 1   MSFQDIQHGS-NPPSRRTQSPSQAVAAGIFQINTAVATFRRLVDSVGTVKDTPEHRQKLH 59

Query: 61  NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120
           NTRQRI QLVKDTSAKLKS+SES+RD++ N NKK+EDAKLARDFQT LQEFQK+QQLASE
Sbjct: 60  NTRQRISQLVKDTSAKLKSLSESNRDSNANANKKIEDAKLARDFQTTLQEFQKVQQLASE 119

Query: 121 RESTYSPSVPPSSAPPSTTDTSGSGD---FMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           RES Y+P+ P SS P S    SG G+    +  E+QP +  Q RQEL LLDNEI+FNEA+
Sbjct: 120 RESAYTPAAPASSLPTS----SGPGEQSIEIDPESQPLVRGQMRQELHLLDNEISFNEAM 175

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237
           IEER+ GLREIEEQIG+ANEIFKDLAVLVH+QG+VIDDI SNI++SA  T   + QLAKA
Sbjct: 176 IEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATVQTKAQLAKA 235

Query: 238 SKNVKSRSSWCWWVLAIIVVALVILLLVFIL 268
           +K+VKS++ WCWWVL I V  LVI L+V ++
Sbjct: 236 NKSVKSKNKWCWWVLLIFVAVLVIFLIVLLI 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388506962|gb|AFK41547.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356561098|ref|XP_003548822.1| PREDICTED: syntaxin-22-like [Glycine max] Back     alignment and taxonomy information
>gi|388495804|gb|AFK35968.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225451663|ref|XP_002277874.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|296082242|emb|CBI21247.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131428|ref|XP_002321082.1| predicted protein [Populus trichocarpa] gi|222861855|gb|EEE99397.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488433|gb|ABK96031.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255543479|ref|XP_002512802.1| syntaxin, plant, putative [Ricinus communis] gi|223547813|gb|EEF49305.1| syntaxin, plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|116788059|gb|ABK24740.1| unknown [Picea sitchensis] gi|148909620|gb|ABR17901.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|388505230|gb|AFK40681.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:3356150268 VAM3 "VACUOLAR MORPHOLOGY 3" [ 0.906 0.906 0.477 1.8e-48
TAIR|locus:2129406262 SYP23 "syntaxin of plants 23" 0.891 0.912 0.444 1.3e-43
TAIR|locus:2148960279 SYP21 "syntaxin of plants 21" 0.835 0.802 0.455 1.9e-42
TAIR|locus:2028336416 ATSYP24 [Arabidopsis thaliana 0.716 0.461 0.371 1.3e-24
DICTYBASE|DDB_G0287733356 syn7A "t-SNARE family protein" 0.421 0.317 0.310 2.3e-21
RGD|619747261 Stx7 "syntaxin 7" [Rattus norv 0.373 0.383 0.31 5.2e-21
UNIPROTKB|Q5ZMP2258 STX7 "Uncharacterized protein" 0.369 0.383 0.31 1.1e-19
UNIPROTKB|F1S3P8261 STX7 "Uncharacterized protein" 0.373 0.383 0.29 7.7e-19
UNIPROTKB|O15400261 STX7 "Syntaxin-7" [Homo sapien 0.373 0.383 0.29 1.1e-17
UNIPROTKB|E2R4Q2261 STX7 "Uncharacterized protein" 0.373 0.383 0.28 2.5e-17
TAIR|locus:3356150 VAM3 "VACUOLAR MORPHOLOGY 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 119/249 (47%), Positives = 148/249 (59%)

Query:     1 MSFQDLQNGXXXXXXXXXXX---XXQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQ 57
             MSFQDL++G                QAVA+GIFQINT V+ F+RLV+ +GT KDT + R+
Sbjct:     1 MSFQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELRE 60

Query:    58 KLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQL 117
             KLH TR  I QLVKDTSAKLK  SE+D  + VN +KK+ DAKLARDFQ VL+EFQK QQ 
Sbjct:    61 KLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQT 120

Query:   118 ASEREXXXXXXXXXXXXXXXXXXXXXXGDFMGSENQPFLMEQKRQELFLLDXXXXXXXXX 177
             A+ERE                       D +  E +  L E KRQEL LLD         
Sbjct:   121 AAERETTYTPFVPQSALPSSYTAGEV--DKV-PEQRAQLQESKRQELVLLDNEIAFNEAV 177

Query:   178 XXXXXXXXXXXXXQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237
                          QIG+ NEIFKDLAVLV++QGV+IDDI ++I++S A T+  + QL +A
Sbjct:   178 IEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQA 237

Query:   238 SKNVKSRSS 246
             +K  KS SS
Sbjct:   238 AKTQKSNSS 246
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005770 "late endosome" evidence=TAS
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009660 "amyloplast organization" evidence=IMP
GO:0005773 "vacuole" evidence=IDA
GO:0010118 "stomatal movement" evidence=IMP
GO:0000325 "plant-type vacuole" evidence=IDA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=IGI;RCA
GO:0009556 "microsporogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016197 "endosomal transport" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0052543 "callose deposition in cell wall" evidence=RCA
GO:0009959 "negative gravitropism" evidence=IMP
TAIR|locus:2129406 SYP23 "syntaxin of plants 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148960 SYP21 "syntaxin of plants 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287733 syn7A "t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|619747 Stx7 "syntaxin 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP2 STX7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S3P8 STX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O15400 STX7 "Syntaxin-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4Q2 STX7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O70257STX7_RATNo assigned EC number0.33040.81710.8390yesno
Q5R602STX7_PONABNo assigned EC number0.31750.81710.8390yesno
P93654SYP22_ARATHNo assigned EC number0.57360.94020.9402yesno
O70439STX7_MOUSENo assigned EC number0.30830.89170.9157yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00140921
SubName- Full=Putative uncharacterized protein; (270 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 5e-19
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 5e-15
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 1e-13
pfam0573962 pfam05739, SNARE, SNARE domain 4e-11
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 9e-09
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 6e-08
pfam00804103 pfam00804, Syntaxin, Syntaxin 4e-04
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 4e-04
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score = 80.8 bits (200), Expect = 5e-19
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 23  QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH-RQKLHNTRQRILQLVKDTSAKLKSVS 81
           + +   I +I+  V   ++L   + T+ D     +Q+L +  Q I +L K+   KLK + 
Sbjct: 9   EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68

Query: 82  ESD------RDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAP 135
           ES+        + V++ +K + + L++ F  V+ EF K Q+   ER              
Sbjct: 69  ESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ-LEITG 127

Query: 136 PSTTD 140
              TD
Sbjct: 128 GEATD 132

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.97
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.97
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.85
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.62
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.59
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 99.57
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.53
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.48
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.38
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.35
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.02
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.55
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 98.46
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.94
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.67
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.38
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 97.08
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 97.01
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.39
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 96.12
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 95.81
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 95.76
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 95.16
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 94.14
PF15605103 Toxin_52: Putative toxin 52 93.14
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 91.63
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 90.43
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 89.59
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 88.85
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 88.84
KOG2678244 consensus Predicted membrane protein [Function unk 88.76
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 87.93
PHA0284475 putative transmembrane protein; Provisional 87.55
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 87.26
PHA0265081 hypothetical protein; Provisional 87.26
PHA0297569 hypothetical protein; Provisional 86.14
PHA0305472 IMV membrane protein; Provisional 85.73
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 85.45
PHA0281971 hypothetical protein; Provisional 85.26
PF0607260 Herpes_US9: Alphaherpesvirus tegument protein US9; 82.39
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 82.24
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 82.15
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 81.49
PF00523490 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR0 80.9
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-42  Score=297.05  Aligned_cols=260  Identities=30%  Similarity=0.373  Sum_probs=208.6

Q ss_pred             CCccccccCCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024426            1 MSFQDLQNGSRSSPSSS-SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKS   79 (268)
Q Consensus         1 msf~~~~~~~~~~~~~~-f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~   79 (268)
                      ||+.+.+.|++...+++ |..++.+|+..|+.++..+..|.+.+..+|++.|+++++++++.....+..+++.+...|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke   80 (269)
T KOG0811|consen    1 DSEAEAEGGGSTQEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKE   80 (269)
T ss_pred             CcccccCCCCCCcCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666655433333 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-CCCCCCCCCCCCCCCchhhhhH
Q 024426           80 VSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP-STTDTSGSGDFMGSENQPFLME  158 (268)
Q Consensus        80 l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  158 (268)
                      +..... .+..+..|.+.++|.++|...+++|+.+|+...++++  .+..+.++..+ ...    .++....+.......
T Consensus        81 ~~~~~~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~s~~~~----~~~~~~~~~~~~~~~  153 (269)
T KOG0811|consen   81 IDTLRL-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQNSQQLD----EESPRVDELSNNGSQ  153 (269)
T ss_pred             HHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccccccccchhhh----hhhhhhhhhhccchh
Confidence            998765 4456899999999999999999999999999999988  23222221111 110    000000000000001


Q ss_pred             HHHH-HHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426          159 QKRQ-ELFLL-DNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK  236 (268)
Q Consensus       159 ~~~~-ql~~~-~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~  236 (268)
                      .+++ +.... .++..|+..++++|...|.+||+.|.|||+||+|||.||++||++||+||+||++|..||++|+.+|.+
T Consensus       154 ~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k  233 (269)
T KOG0811|consen  154 SQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK  233 (269)
T ss_pred             hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 22222 223677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHHHh
Q 024426          237 ASKNVKSRSSWCWWVLAIIVVALVILLLVFI  267 (268)
Q Consensus       237 a~~~qk~~rk~~~~~~i~~~i~~~ii~~~l~  267 (268)
                      |.+||+++|||+||++++++++++|+++++.
T Consensus       234 A~~yq~~~~k~~~~ll~v~~~v~lii~l~i~  264 (269)
T KOG0811|consen  234 AAKYQRKARKKKCILLLVGGPVGLIIGLIIA  264 (269)
T ss_pred             HHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888887765

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF15605 Toxin_52: Putative toxin 52 Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>PHA02844 putative transmembrane protein; Provisional Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PHA02650 hypothetical protein; Provisional Back     alignment and domain information
>PHA02975 hypothetical protein; Provisional Back     alignment and domain information
>PHA03054 IMV membrane protein; Provisional Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02819 hypothetical protein; Provisional Back     alignment and domain information
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 3e-06
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 1e-05
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 196 NEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKAS 238
           NEIFKDL +++HEQG VID I +N+ES+      A  QL++A+
Sbjct: 22  NEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 9e-30
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 3e-27
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 3e-25
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 3e-23
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 5e-19
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 6e-19
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 3e-18
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 3e-17
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 3e-17
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 1e-16
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-16
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  112 bits (280), Expect = 9e-30
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 14/236 (5%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAI-GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSV 80
            + +   I +I   V   +R   AI  +       +++L      I +      +KLKS+
Sbjct: 37  VEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSI 96

Query: 81  SESDRDTDVNQNKKVED-------AKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSS 133
            +S    +       +        + L+R F  V+ E+   Q    ER           +
Sbjct: 97  EQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEIT 156

Query: 134 APPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIG 193
              +T++        G+                         + IE R   + ++E  I 
Sbjct: 157 GRTTTSEELEDMLESGNPAIFASGIIMDSS------ISKQALSEIETRHSEIIKLENSIR 210

Query: 194 QANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCW 249
           + +++F D+A+LV  QG +ID I  N+E +      A     KA K          
Sbjct: 211 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.97
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.94
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.92
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.92
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.9
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.89
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.86
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.85
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.83
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.78
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.48
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.45
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 99.11
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 98.07
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.85
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.8
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.71
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.69
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.42
3b5n_D64 Protein transport protein SEC9; snare complex, syn 97.41
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.39
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.65
3b5n_C70 Protein transport protein SEC9; snare complex, syn 96.15
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.76
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 95.12
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 94.45
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 89.87
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 86.99
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 84.4
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 80.62
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=4e-39  Score=280.68  Aligned_cols=222  Identities=22%  Similarity=0.230  Sum_probs=162.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------cCCcch
Q 024426           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAI-GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSES-------DRDTDV   89 (268)
Q Consensus        18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l-~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~-------~~~~~~   89 (268)
                      |+..+++|+..|..|+.++.+|+++++.+ ++|.+.+.++.+|+.++.+++.+++.|+.+|+.|...       +++++.
T Consensus        33 F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e  112 (267)
T 1dn1_B           33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD  112 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence            99999999999999999999999999875 4566667899999999999999999999999999764       222345


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCC-CCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 024426           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASEREST----YSPS-VPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQEL  164 (268)
Q Consensus        90 ~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql  164 (268)
                      .|++++++.+|+++|++++..|+.+|..|+++++.    +..+ .|.+ .+++.++++++|++..|.+ .++..+  ++.
T Consensus       113 ~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~-tdeeie~~ie~g~~~~f~q-~~l~~~--~~~  188 (267)
T 1dn1_B          113 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT-TSEELEDMLESGNPAIFAS-GIIMDS--SIS  188 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHTCSSCTTTT-TCCCCS--HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCC-CHHHHHHHHhCCcHHHHHH-HHHHhh--HHH
Confidence            69999999999999999999999999999988764    2223 3332 1222223344555554443 322211  111


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024426          165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSR  244 (268)
Q Consensus       165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~  244 (268)
                             ......+++||++|.+||++|.|||+||.|||.||++||++||+||+||+.|..||+.|+.+|.+|.+|||++
T Consensus       189 -------~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~  261 (267)
T 1dn1_B          189 -------KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA  261 (267)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   1122459999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHH
Q 024426          245 SSWCWW  250 (268)
Q Consensus       245 rk~~~~  250 (268)
                      |||+||
T Consensus       262 rkk~~~  267 (267)
T 1dn1_B          262 RRKKIM  267 (267)
T ss_dssp             ------
T ss_pred             cCcccC
Confidence            999996
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 5e-20
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.9 bits (204), Expect = 5e-20
 Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 5/188 (2%)

Query: 23  QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             +   + + +  +     L   + T  +  +    L ++    +    D   KLK+  +
Sbjct: 12  SQINRDLDKYDHTINQVDSLHKRLLTEVNE-EQASHLRHSLDNFVAQATDLQFKLKNEIK 70

Query: 83  S-DRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDT 141
           S  RD   + NK+ +     + F  ++Q+++ +     E     +         P  T+ 
Sbjct: 71  SAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMII-QPEATED 129

Query: 142 SGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKD 201
                      Q    +         + + A  E  ++ R   L ++E+ + +  ++F D
Sbjct: 130 EVEAAISDVGGQQIFSQALLNANRRGEAKTALAE--VQARHQELLKLEKSMAELTQLFND 187

Query: 202 LAVLVHEQ 209
           +  LV EQ
Sbjct: 188 MEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.81
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.39
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 97.94
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4.8e-21  Score=156.46  Aligned_cols=182  Identities=15%  Similarity=0.171  Sum_probs=131.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHH
Q 024426           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTS---KDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK   94 (268)
Q Consensus        18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~---~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k   94 (268)
                      |+..+++|+..|..|+..+..|.+++..++++   .+...++.+++.++.+++.+++.|+..++.+...+   +..+.++
T Consensus         7 f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~~   83 (196)
T d1fioa_           7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTNKQ   83 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHH
Confidence            88999999999999999999999999876544   34467889999999999999999999999987643   3578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHhh
Q 024426           95 VEDAKLARDFQTVLQEFQKIQQLASERESTYSP-----SVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDN  169 (268)
Q Consensus        95 ~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql~~~~~  169 (268)
                      +++.+|.++|+.++..|+..|..|.++++....     ..|.. .+.+.+.....++.    ...+.... ....  ...
T Consensus        84 ~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~-~~~~--~~~  155 (196)
T d1fioa_          84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEA-TEDEVEAAISDVGG----QQIFSQAL-LNAN--RRG  155 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-CHHHHHHHTSHHHH----HHHHHHHT-C--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc-cchhhhHhhccccc----hHHHHHHH-HHHH--HHH
Confidence            999999999999999999999999987764322     22221 11111111110000    00000000 0000  011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024426          170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQG  210 (268)
Q Consensus       170 e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQg  210 (268)
                      +.......+++|+++|.+||++|.|||+||+|||+||++|.
T Consensus       156 ~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         156 EAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            22344567999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure